RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9120
         (263 letters)



>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein
           2, CFT2 {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 514

 Score = 46.0 bits (108), Expect = 2e-06
 Identities = 10/74 (13%), Positives = 23/74 (31%), Gaps = 3/74 (4%)

Query: 13  FPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFGDSVHFVQLWGSNPLHTI 72
           + + +      +     I      +++    I F              +   G++   T+
Sbjct: 308 WENRNNTSPFEIGSRIKIIAPNELSKYPGSKICFVSEVG---ALINEVIIKVGNSEKTTL 364

Query: 73  IFTEPDFPYVEALA 86
           I T+P F    +L 
Sbjct: 365 ILTKPSFECASSLD 378


>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot
           fungus (Peniophora sp. SG) [TaxId: 204723]}
          Length = 379

 Score = 28.0 bits (61), Expect = 1.2
 Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 5/73 (6%)

Query: 1   CKQSKVYLPEEPFPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFGDSVHF 60
             Q     P  P      + + R+   +   +   N + R    VF G  +L  G   + 
Sbjct: 292 FGQLGRPNPTNPPELLPSLGSHRMGFDEKEDNCCVNTDSR----VF-GFKNLFLGGCGNI 346

Query: 61  VQLWGSNPLHTII 73
              +G+NP  T +
Sbjct: 347 PTAYGANPTLTAM 359


>d1y5oa1 b.55.1.9 (A:2-115) RNA polymerase II transcription factor B
           73 kDa, TFB1 {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 114

 Score = 25.3 bits (55), Expect = 4.6
 Identities = 9/34 (26%), Positives = 13/34 (38%)

Query: 147 LPPRPMDQQALKNANVLLLSGLTQTPTSNPDAML 180
           L  R  D   +    +  +  L  TP S+   ML
Sbjct: 26  LTWRSTDGDKVHTVVLSTIDKLQATPASSEKMML 59


>g1jmu.1 e.35.1.1 (A:,B:) Membrane penetration protein mu1 {Reovirus
           [TaxId: 10891]}
          Length = 666

 Score = 26.4 bits (58), Expect = 4.8
 Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 2/41 (4%)

Query: 163 LLLSGLTQTPTSNPDAMLGELCMT--VVGTLRANGKVDRKV 201
           +  + +T T  + PD     L M+    G +   G V  +V
Sbjct: 464 IDSAAITPTNMTQPDVWDALLTMSPLSAGEVTVKGAVVSEV 504


>d2gx8a1 c.135.1.1 (A:4-373) Nif3-related protein BC4286 {Bacillus
           cereus [TaxId: 1396]}
          Length = 370

 Score = 25.8 bits (56), Expect = 5.3
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 5/49 (10%)

Query: 7   YLPEEPFPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFG 55
           Y+ +  F  A +  TG + +    H  A +A      IV  GH   +  
Sbjct: 293 YINQAKFKGADVYVTGDMYY----HV-AHDAMMLGLNIVDPGHNVEKVM 336


>d1nsca_ b.68.1.1 (A:) Influenza neuraminidase {Influenza B virus,
           different strains [TaxId: 11520]}
          Length = 390

 Score = 25.6 bits (56), Expect = 7.6
 Identities = 6/29 (20%), Positives = 14/29 (48%)

Query: 184 CMTVVGTLRANGKVDRKVLTLKRGEVLKI 212
           C  ++    A+G    + L ++ G ++K 
Sbjct: 160 CYLMITDGSASGISKCRFLKIREGRIIKE 188


>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum)
           [TaxId: 4682]}
          Length = 425

 Score = 25.4 bits (55), Expect = 7.8
 Identities = 6/20 (30%), Positives = 10/20 (50%)

Query: 130 WCSGQGATYLGGVVVKALPP 149
            CS  G  +L G++ +  P 
Sbjct: 19  NCSEHGRAFLDGIISEGSPK 38


>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean
           (Phaseolus vulgaris), phaseolin [TaxId: 3885]}
          Length = 200

 Score = 25.3 bits (55), Expect = 7.8
 Identities = 5/33 (15%), Positives = 8/33 (24%)

Query: 181 GELCMTVVGTLRANGKVDRKVLTLKRGEVLKIP 213
           G   + +V                   +  KIP
Sbjct: 71  GSAILVLVKPDDRREYFFLTSDNPIFSDHQKIP 103


>d2aepa1 b.68.1.1 (A:83-469) Influenza neuraminidase {Influenza A
           virus, different strains [TaxId: 11320]}
          Length = 387

 Score = 25.2 bits (55), Expect = 9.4
 Identities = 9/29 (31%), Positives = 18/29 (62%)

Query: 184 CMTVVGTLRANGKVDRKVLTLKRGEVLKI 212
           C  V+    A+G+ D K+L ++ G+++ I
Sbjct: 155 CTVVMTDGSASGRADTKILFIEEGKIVHI 183


>d1f8ea_ b.68.1.1 (A:) Influenza neuraminidase {Influenza A virus,
           different strains [TaxId: 11320]}
          Length = 388

 Score = 25.2 bits (55), Expect = 9.5
 Identities = 8/29 (27%), Positives = 13/29 (44%)

Query: 184 CMTVVGTLRANGKVDRKVLTLKRGEVLKI 212
           C  V     A G  + ++   K G++LK 
Sbjct: 157 CPVVFTDGSATGPAETRIYYFKEGKILKW 185


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.427 

Gapped
Lambda     K      H
   0.267   0.0588    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 988,265
Number of extensions: 45231
Number of successful extensions: 108
Number of sequences better than 10.0: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 11
Length of query: 263
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 179
Effective length of database: 1,254,276
Effective search space: 224515404
Effective search space used: 224515404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.1 bits)