BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9121
(203 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8K114|INT9_MOUSE Integrator complex subunit 9 OS=Mus musculus GN=Ints9 PE=2 SV=1
Length = 658
Score = 215 bits (547), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 105/204 (51%), Positives = 145/204 (71%), Gaps = 4/204 (1%)
Query: 1 MKVYSLSSHPNKACYILRFKEMTIMLDCGLCALPLMHFLPLPIIPTAKFNNLPSWIPREC 60
MK+Y LS HP C +L+FK TIMLDCGL ++FLPLP++ + + +NLP W ++
Sbjct: 1 MKLYCLSGHPTLPCNVLKFKSTTIMLDCGLDMTSTLNFLPLPLVQSPRLSNLPGWSLKD- 59
Query: 61 TEAQLEGELKECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSMLALPFITEGTGF 120
A L+ ELKEC G VFVDS PEF P ++L+D S V++ILISNY M+ALP+ITE TGF
Sbjct: 60 GNAFLDKELKECSGHVFVDSVPEFCLPETELIDLSTVDVILISNYHCMMALPYITEHTGF 119
Query: 121 EGVVYATEPTLQIGKFYLEELVQYIEKTPKLTSASHW--KDISHLI-SPFSEDIKPRSWR 177
G VYATEPT+QIG+ +EELV +IE+ PK SAS W KDI L+ SP + ++ +WR
Sbjct: 120 TGTVYATEPTMQIGRLLMEELVNFIERVPKAQSASLWKNKDIQRLLPSPLKDAVEVSTWR 179
Query: 178 QLYNLQSVYASLARVQMVGYDEKL 201
+ Y +Q V ++L+++Q+VGY +K+
Sbjct: 180 RCYTMQEVNSALSKIQLVGYSQKI 203
>sp|Q2KJA6|INT9_BOVIN Integrator complex subunit 9 OS=Bos taurus GN=INTS9 PE=2 SV=1
Length = 658
Score = 214 bits (546), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 105/204 (51%), Positives = 145/204 (71%), Gaps = 4/204 (1%)
Query: 1 MKVYSLSSHPNKACYILRFKEMTIMLDCGLCALPLMHFLPLPIIPTAKFNNLPSWIPREC 60
MK+Y LS HP C +L+FK TIMLDCGL ++FLPLP++ + + +NLP W ++
Sbjct: 1 MKLYCLSGHPTLPCNVLKFKSTTIMLDCGLDMTSTLNFLPLPLVQSPRLSNLPGWSLKD- 59
Query: 61 TEAQLEGELKECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSMLALPFITEGTGF 120
A L+ ELKEC G VFVDS PEF P ++L+D S V++ILISNY M+ALP+ITE TGF
Sbjct: 60 GNAFLDKELKECSGHVFVDSVPEFCLPETELIDLSTVDVILISNYHCMMALPYITEHTGF 119
Query: 121 EGVVYATEPTLQIGKFYLEELVQYIEKTPKLTSASHW--KDISHLI-SPFSEDIKPRSWR 177
G VYATEPT+QIG+ +EELV +IE+ PK SAS W KDI L+ SP + ++ +WR
Sbjct: 120 TGTVYATEPTVQIGRLLMEELVNFIERVPKAQSASLWKNKDIQRLLPSPLKDAVEVSTWR 179
Query: 178 QLYNLQSVYASLARVQMVGYDEKL 201
+ Y +Q V ++L+++Q+VGY +K+
Sbjct: 180 RCYTMQEVNSALSKIQLVGYSQKI 203
>sp|Q9NV88|INT9_HUMAN Integrator complex subunit 9 OS=Homo sapiens GN=INTS9 PE=1 SV=2
Length = 658
Score = 214 bits (545), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 105/204 (51%), Positives = 145/204 (71%), Gaps = 4/204 (1%)
Query: 1 MKVYSLSSHPNKACYILRFKEMTIMLDCGLCALPLMHFLPLPIIPTAKFNNLPSWIPREC 60
MK+Y LS HP C +L+FK TIMLDCGL ++FLPLP++ + + +NLP W ++
Sbjct: 1 MKLYCLSGHPTLPCNVLKFKSTTIMLDCGLDMTSTLNFLPLPLVQSPRLSNLPGWSLKD- 59
Query: 61 TEAQLEGELKECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSMLALPFITEGTGF 120
A L+ ELKEC G VFVDS PEF P ++L+D S V++ILISNY M+ALP+ITE TGF
Sbjct: 60 GNAFLDKELKECSGHVFVDSVPEFCLPETELIDLSTVDVILISNYHCMMALPYITEHTGF 119
Query: 121 EGVVYATEPTLQIGKFYLEELVQYIEKTPKLTSASHW--KDISHLI-SPFSEDIKPRSWR 177
G VYATEPT+QIG+ +EELV +IE+ PK SAS W KDI L+ SP + ++ +WR
Sbjct: 120 TGTVYATEPTVQIGRLLMEELVNFIERVPKAQSASLWKNKDIQRLLPSPLKDAVEVSTWR 179
Query: 178 QLYNLQSVYASLARVQMVGYDEKL 201
+ Y +Q V ++L+++Q+VGY +K+
Sbjct: 180 RCYTMQEVNSALSKIQLVGYSQKI 203
>sp|Q6DFF4|INT9_XENLA Integrator complex subunit 9 OS=Xenopus laevis GN=ints9 PE=2 SV=1
Length = 658
Score = 213 bits (542), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 102/204 (50%), Positives = 145/204 (71%), Gaps = 4/204 (1%)
Query: 1 MKVYSLSSHPNKACYILRFKEMTIMLDCGLCALPLMHFLPLPIIPTAKFNNLPSWIPREC 60
MK+Y LS HP C IL+FK TIMLDCGL + FLPLP++ + + + LP W+ ++
Sbjct: 1 MKLYCLSGHPTLPCNILKFKSSTIMLDCGLDMTSTLSFLPLPLVHSTRLSKLPGWVTKDG 60
Query: 61 TEAQLEGELKECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSMLALPFITEGTGF 120
Q E ELKEC G+VFVDS PEF P ++L+D S V++ILISNY M+ALP+ITE TGF
Sbjct: 61 NN-QFEKELKECSGRVFVDSVPEFCLPETELIDLSTVDVILISNYHCMMALPYITERTGF 119
Query: 121 EGVVYATEPTLQIGKFYLEELVQYIEKTPKLTSASHW--KDISHLI-SPFSEDIKPRSWR 177
G VYATEPT+QIG+ +EELV +IE+ PK SA+ W KD+ L+ +P + ++ +W+
Sbjct: 120 TGTVYATEPTVQIGRLLMEELVNFIERVPKAQSATVWKHKDVQRLLPAPLKDAVEVFTWK 179
Query: 178 QLYNLQSVYASLARVQMVGYDEKL 201
+ Y++Q V A+L+++Q+VGY +K+
Sbjct: 180 KCYSMQEVNAALSKIQLVGYSQKI 203
>sp|Q5ZKK2|INT9_CHICK Integrator complex subunit 9 OS=Gallus gallus GN=INTS9 PE=2 SV=1
Length = 658
Score = 199 bits (505), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 99/204 (48%), Positives = 141/204 (69%), Gaps = 4/204 (1%)
Query: 1 MKVYSLSSHPNKACYILRFKEMTIMLDCGLCALPLMHFLPLPIIPTAKFNNLPSWIPREC 60
MK+Y LS HP C +L+FK TIMLDCGL ++FLPLP++ + + + LP + ++
Sbjct: 1 MKLYCLSGHPTLPCNVLKFKSTTIMLDCGLDMTSTLNFLPLPLVQSPRLSKLPGLVLKDG 60
Query: 61 TEAQLEGELKECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSMLALPFITEGTGF 120
+ L+ ELKEC G VFVDS PEF P ++L+D S V++ILISNY M+ALP+ITE TGF
Sbjct: 61 STF-LDKELKECSGHVFVDSVPEFCLPETELLDLSTVDVILISNYHCMMALPYITEYTGF 119
Query: 121 EGVVYATEPTLQIGKFYLEELVQYIEKTPKLTSASHWKD--ISHLI-SPFSEDIKPRSWR 177
G VYATEPT+QIG+ +EELV IE+ PK SAS WK+ + L+ +P + ++ WR
Sbjct: 120 TGTVYATEPTVQIGRLLMEELVNSIERVPKAQSASTWKNKEVQRLLPAPLKDAVEVSMWR 179
Query: 178 QLYNLQSVYASLARVQMVGYDEKL 201
+ Y + V A+L+++Q+VGY +K+
Sbjct: 180 KCYTMPEVNAALSKIQLVGYSQKI 203
>sp|Q4R5Z4|INT9_MACFA Integrator complex subunit 9 OS=Macaca fascicularis GN=INTS9 PE=2
SV=1
Length = 637
Score = 177 bits (450), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 91/204 (44%), Positives = 132/204 (64%), Gaps = 25/204 (12%)
Query: 1 MKVYSLSSHPNKACYILRFKEMTIMLDCGLCALPLMHFLPLPIIPTAKFNNLPSWIPREC 60
MK+Y LS HP C +L+FK TIMLDCGL ++FLPLP++ + + ++LP W
Sbjct: 1 MKLYCLSGHPTLPCNVLKFKSTTIMLDCGLDMTSTLNFLPLPLVQSPRLSSLPGW----- 55
Query: 61 TEAQLEGELKECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSMLALPFITEGTGF 120
LK+ G F+D ++L+D S V++ILISNY M+ALP+ITE TGF
Sbjct: 56 -------SLKD--GNAFLDK--------TELIDLSTVDVILISNYHCMMALPYITEHTGF 98
Query: 121 EGVVYATEPTLQIGKFYLEELVQYIEKTPKLTSASHW--KDISHLI-SPFSEDIKPRSWR 177
G VYATEPT+QIG+ +EELV +IE+ PK SAS W KDI L+ SP + ++ +WR
Sbjct: 99 TGTVYATEPTVQIGRLLMEELVNFIERVPKAQSASLWKNKDIQRLLPSPLKDAVEVSTWR 158
Query: 178 QLYNLQSVYASLARVQMVGYDEKL 201
+ Y +Q V ++L+++Q+VG+ +K+
Sbjct: 159 RCYTMQEVNSALSKIQLVGFSQKI 182
>sp|A7SBF0|INT9_NEMVE Integrator complex subunit 9 homolog OS=Nematostella vectensis
GN=ints9 PE=3 SV=1
Length = 660
Score = 177 bits (449), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 92/207 (44%), Positives = 130/207 (62%), Gaps = 6/207 (2%)
Query: 1 MKVYSLSSHPNKACYILRFKEMTIMLDCGLCALPLMHFLPLPIIPTAKFNNLPSWIPREC 60
MK+Y + + C +L+FK+ IMLDCGL + F PL ++ KF+ L SW RE
Sbjct: 1 MKLYCVGHSVSSPCLVLQFKQTNIMLDCGLDMSTVNQFTPLSLVNNEKFSQLKSWSSREL 60
Query: 61 TEAQ---LEGELKECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSMLALPFITEG 117
E + + LKE G++F+D+ PE PP + L+DFS V++ILISNY MLALPFITE
Sbjct: 61 QEIEGFTAQNNLKEAGGRLFIDAEPEVCPPETGLIDFSMVDVILISNYHHMLALPFITEY 120
Query: 118 TGFEGVVYATEPTLQIGKFYLEELVQYIEKTPKLTSASHWKD---ISHLISPFSEDIKPR 174
+GF G +YATEPT+QIG+ + ELV + E+ PK + + WK+ I L +P +E +
Sbjct: 121 SGFNGKIYATEPTIQIGRDLMLELVTFAERVPKRRNGNMWKNDNVIRCLPAPLNELANVK 180
Query: 175 SWRQLYNLQSVYASLARVQMVGYDEKL 201
SWR LY+ V A ++++Q V Y EKL
Sbjct: 181 SWRVLYSKHDVKACISKIQAVSYSEKL 207
>sp|Q54SH0|INT9_DICDI Integrator complex subunit 9 homolog OS=Dictyostelium discoideum
GN=ints9 PE=3 SV=1
Length = 712
Score = 100 bits (250), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 119/240 (49%), Gaps = 40/240 (16%)
Query: 1 MKVYSLSSHPNKACYILRFKEMTIMLDCGLCALPLMHFLP-----------------LPI 43
MKV+ LS C++L +K + I+LDC L ++HFLP
Sbjct: 1 MKVHCLSQSAQSPCFLLEYKNVKILLDCALEISSILHFLPKNLNYNNNNNNNNNNNNNNN 60
Query: 44 IPTAKFNNLPSWIPRECTEAQLEGELKECCGKVFVD---SAPEFQPPLSQLVD-FSEVNM 99
NN S+ +E + +L K G +++D S ++ P +++D FS ++M
Sbjct: 61 NNNNNNNNNNSYSFKE-KDKELNQFFKNINGTLYIDNGCSNIKYNCPQFEMIDDFSTIDM 119
Query: 100 ILISNYLSMLALPFITEGTGFEGVVYATEPTLQIGKFYLEELVQYIEKTPKLTS------ 153
ILISNY ++ ALPFITE T F+G +YATEPT+QIGK LEELVQ ++ +
Sbjct: 120 ILISNYTNIYALPFITEYTNFQGKIYATEPTVQIGKLLLEELVQMDKQYSNSSINNNNNN 179
Query: 154 ---ASHWKDIS-------HLISPFSEDIKPRS--WRQLYNLQSVYASLARVQMVGYDEKL 201
+ W++I H + +E++ S W+ LY + S ++Q + ++E +
Sbjct: 180 NNLSDCWQNIEILEKLNVHNVGMENENLYRDSYRWKDLYKKIDIEKSFEKIQSIRFNESI 239
>sp|Q06224|YSH1_YEAST Endoribonuclease YSH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YSH1 PE=1 SV=1
Length = 779
Score = 37.7 bits (86), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 50/146 (34%)
Query: 2 KVYSL--SSHPNKACYILRFKEMTIMLDCGLCALPLMHFLPLPIIPTAKFNNLPSWIPRE 59
K +SL S+ ++C+IL++K T+MLD G I P + L S
Sbjct: 10 KFFSLGGSNEVGRSCHILQYKGKTVMLDAG-------------IHPA--YQGLASL---- 50
Query: 60 CTEAQLEGELKECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYL--SMLALPFITEG 117
P D S+V+++LIS++ +LP++ +
Sbjct: 51 ---------------------------PFYDEFDLSKVDILLISHFHLDHAASLPYVMQR 83
Query: 118 TGFEGVVYATEPTLQIGKFYLEELVQ 143
T F+G V+ T PT I ++ L + V+
Sbjct: 84 TNFQGRVFMTHPTKAIYRWLLRDFVR 109
>sp|Q59P50|YSH1_CANAL Endoribonuclease YSH1 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=YSH1 PE=3 SV=1
Length = 870
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 18/107 (16%)
Query: 93 DFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQIGKFYLEELVQYIEKTPK 150
D S+V+++LIS++ +LP++ + + F G V+ T T I ++ +++ V +
Sbjct: 148 DISKVDILLISHFHVDHSASLPYVMQQSNFRGKVFMTHATKAIYRWLMQDFV-------R 200
Query: 151 LTSASHWKDISHLISPFSEDIKPRSWRQLYNLQSVYASLARVQMVGY 197
+TS + + SED LY + S R++ + Y
Sbjct: 201 VTSIGNSR---------SEDGGGGEGSNLYTDDDIMKSFDRIETIDY 238
>sp|Q74ZC0|YSH1_ASHGO Endoribonuclease YSH1 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=YSH1 PE=3 SV=2
Length = 771
Score = 36.2 bits (82), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 48/139 (34%)
Query: 7 SSHPNKACYILRFKEMTIMLDCGLCALPLMHFLPLPIIPTAKFNNLPSWIPRECTEAQLE 66
S+ ++C+IL++K T+MLD G+ P A L
Sbjct: 19 SNEVGRSCHILQYKGKTVMLDAGVH-------------------------PAHQGIASL- 52
Query: 67 GELKECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVV 124
P D S+V ++LIS++ +LP++ + T F+G V
Sbjct: 53 --------------------PFYDEFDLSQVEVLLISHFHLDHAASLPYVMQRTNFQGRV 92
Query: 125 YATEPTLQIGKFYLEELVQ 143
+ T PT I ++ L + V+
Sbjct: 93 FMTHPTKAIYRWLLSDFVK 111
>sp|O13794|YSH1_SCHPO Endoribonuclease ysh1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ysh1 PE=3 SV=2
Length = 757
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 93 DFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQIGKFYLEELVQ 143
D S V+++LIS++ + +LP++ + T F G V+ T PT + K+ L + V+
Sbjct: 67 DLSTVDVLLISHFHLDHVASLPYVMQKTNFRGRVFMTHPTKAVCKWLLSDYVK 119
>sp|Q6FUA5|YSH1_CANGA Endoribonuclease YSH1 OS=Candida glabrata (strain ATCC 2001 / CBS
138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=YSH1 PE=3
SV=1
Length = 771
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 50/135 (37%)
Query: 12 KACYILRFKEMTIMLDCGLC-ALPLMHFLPLPIIPTAKFNNLPSWIPRECTEAQLEGELK 70
++C+I++FK TIMLD G+ A M LP
Sbjct: 23 RSCHIIQFKGKTIMLDAGIHPAYQGMASLP------------------------------ 52
Query: 71 ECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATE 128
F D D S V+++LIS++ +LP++ + T F+G V+ T
Sbjct: 53 ------FYDD-----------FDLSIVDVLLISHFHLDHAASLPYVMQKTNFKGRVFMTH 95
Query: 129 PTLQIGKFYLEELVQ 143
PT I ++ L + V+
Sbjct: 96 PTKAIYRWLLRDFVR 110
>sp|Q4PEJ3|YSH1_USTMA Endoribonuclease YSH1 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=YSH1 PE=3 SV=1
Length = 880
Score = 35.8 bits (81), Expect = 0.22, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 18/98 (18%)
Query: 87 PLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFE---GVVYATEPTLQIGKFYLEEL 141
P +D+S V+ ILI+++ AL +I E T F G VY T PT + +F + +
Sbjct: 66 PFIDELDWSTVDAILITHFHLDHAAALTYIMEKTNFRDGHGKVYMTHPTKAVYRFLMSDF 125
Query: 142 VQYIEKTPKLTSASHWKDISHLISPFSEDIKPRSWRQL 179
V ++++A + ++ F E+ SWRQ+
Sbjct: 126 V-------RISNAGNDDNL------FDENEMLASWRQI 150
>sp|Q4IPN9|YSH1_GIBZE Endoribonuclease YSH1 OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=YSH1 PE=3 SV=2
Length = 833
Score = 35.8 bits (81), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 87 PLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQIGKFYLEELVQY 144
P D S V+++LIS++ +LP++ T F G V+ T PT I K+ +++ V+
Sbjct: 67 PFYDDFDLSTVDVLLISHFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRV 126
Query: 145 IEKTPKLTSASHWKDISHL 163
+ T+ + + HL
Sbjct: 127 GNTSSNPTTQPVYTEQDHL 145
>sp|Q6C2Z7|YSH1_YARLI Endoribonuclease YSH1 OS=Yarrowia lipolytica (strain CLIB 122 / E
150) GN=YSH1 PE=3 SV=2
Length = 827
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 56/148 (37%), Gaps = 51/148 (34%)
Query: 11 NKACYILRFKEMTIMLDCGLCALPLMHFLPLPIIPTAKFNNLPSWIPRECTEAQLEGELK 70
++C+++ FK TIMLD G+ P A L
Sbjct: 49 GRSCHVISFKGKTIMLDAGVH-------------------------PAHSGLASL----- 78
Query: 71 ECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATE 128
P D S ++++LIS++ +LP++ + T F+G V+ T
Sbjct: 79 ----------------PFYDEFDLSTIDILLISHFHLDHAASLPYVMQKTNFKGRVFMTH 122
Query: 129 PTLQIGKFYLEELVQYI---EKTPKLTS 153
PT I ++ L + V+ E P L S
Sbjct: 123 PTKGIYRWLLSDFVRVTSGAESDPDLYS 150
>sp|Q6CUI5|YSH1_KLULA Endoribonuclease YSH1 OS=Kluyveromyces lactis (strain ATCC 8585 /
CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=YSH1 PE=3 SV=1
Length = 764
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 81/201 (40%), Gaps = 69/201 (34%)
Query: 1 MKVYSL--SSHPNKACYILRFKEMTIMLDCGLCALPLMHFLPLPIIPTAKFNNLPSWIPR 58
++ +SL S+ ++C+IL++K T+MLD G+ P L +LP +
Sbjct: 14 LRFFSLGGSNEVGRSCHILQYKGKTLMLDAGIH--PAHQGLA----------SLPYY--- 58
Query: 59 ECTEAQLEGELKECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYL--SMLALPFITE 116
EF D S ++++LIS++ +LP++ +
Sbjct: 59 -----------------------DEF--------DLSTIDLLLISHFHLDHAASLPYVMQ 87
Query: 117 GTGFEGVVYATEPTLQIGKFYLEELVQYIEKTPKLTSASHWKDISHLISPFSEDIKPRSW 176
T F G V+ T PT I ++ L + V K+TS SP + S
Sbjct: 88 RTNFRGRVFMTHPTKAIYRWLLNDFV-------KVTSIGD--------SPGQD----SSN 128
Query: 177 RQLYNLQSVYASLARVQMVGY 197
LY+ + + S R++ + Y
Sbjct: 129 DNLYSDEDLAESFDRIETIDY 149
>sp|Q10955|RGS5_CAEEL Regulator of G-protein signaling rgs-5 OS=Caenorhabditis elegans
GN=rgs-5 PE=2 SV=4
Length = 492
Score = 35.0 bits (79), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 114 ITEGTGFEGVVYATEPTLQ-------IGKFYLEELVQYIEKTPKLTSASHWKDISHLISP 166
I G+ EG++ +P L I L +QY++ T KL W + S
Sbjct: 61 IGSGSDHEGIIVKQKPQLAFSLDRLLIDSSALSYFIQYLDSTDKLNLIKFWMHVEGFKSS 120
Query: 167 FSEDIKPRSWRQLYNLQSVY 186
FSE I+ L + +S+Y
Sbjct: 121 FSEQIQAAQELSLRDAKSIY 140
>sp|Q5BEP0|YSH1_EMENI Endoribonuclease ysh1 OS=Emericella nidulans (strain FGSC A4 / ATCC
38163 / CBS 112.46 / NRRL 194 / M139) GN=ysh1 PE=3 SV=1
Length = 884
Score = 35.0 bits (79), Expect = 0.38, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 50/135 (37%)
Query: 12 KACYILRFKEMTIMLDCGLCALPLMHFLPLPIIPTAK-FNNLPSWIPRECTEAQLEGELK 70
++C+I+++K T+MLD G MH P + F+ LP
Sbjct: 37 RSCHIIQYKGKTVMLDAG------MH-------PAKEGFSALP----------------- 66
Query: 71 ECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATE 128
F D EF D S V+++LIS++ ALP++ T F+G V+ T
Sbjct: 67 ------FFD---EF--------DLSTVDILLISHFHVDHSSALPYVLSKTNFKGRVFMTH 109
Query: 129 PTLQIGKFYLEELVQ 143
T I K+ +++ V+
Sbjct: 110 ATKAIYKWLIQDNVR 124
>sp|Q4WRC2|YSH1_ASPFU Endoribonuclease ysh1 OS=Neosartorya fumigata (strain ATCC MYA-4609
/ Af293 / CBS 101355 / FGSC A1100) GN=ysh1 PE=3 SV=1
Length = 872
Score = 34.3 bits (77), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 50/136 (36%)
Query: 11 NKACYILRFKEMTIMLDCGLCALPLMHFLPLPIIPTAK-FNNLPSWIPRECTEAQLEGEL 69
++C+I+++K T+MLD G MH P + F+ LP
Sbjct: 37 GRSCHIIQYKGKTVMLDAG------MH-------PAKEGFSALP---------------- 67
Query: 70 KECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYAT 127
F D EF D S V+++LIS++ ALP++ T F+G V+ T
Sbjct: 68 -------FFD---EF--------DLSTVDILLISHFHVDHSSALPYVLSKTNFKGRVFMT 109
Query: 128 EPTLQIGKFYLEELVQ 143
T I K+ +++ V+
Sbjct: 110 HATKAIYKWLIQDNVR 125
>sp|Q9QXK7|CPSF3_MOUSE Cleavage and polyadenylation specificity factor subunit 3 OS=Mus
musculus GN=Cpsf3 PE=1 SV=2
Length = 684
Score = 33.9 bits (76), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 54/136 (39%), Gaps = 50/136 (36%)
Query: 11 NKACYILRFKEMTIMLDCGLC-ALPLMHFLPLPIIPTAKFNNLPSWIPRECTEAQLEGEL 69
++C IL FK IMLDCG+ L M LP
Sbjct: 24 GRSCIILEFKGRKIMLDCGIHPGLEGMDALP----------------------------- 54
Query: 70 KECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYAT 127
++D L+D +E++++LIS++ ALP+ + T F+G + T
Sbjct: 55 -------YID-----------LIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMT 96
Query: 128 EPTLQIGKFYLEELVQ 143
T I ++ L + V+
Sbjct: 97 HATKAIYRWLLSDYVK 112
>sp|P79101|CPSF3_BOVIN Cleavage and polyadenylation specificity factor subunit 3 OS=Bos
taurus GN=CPSF3 PE=2 SV=1
Length = 684
Score = 33.5 bits (75), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 54/136 (39%), Gaps = 50/136 (36%)
Query: 11 NKACYILRFKEMTIMLDCGLC-ALPLMHFLPLPIIPTAKFNNLPSWIPRECTEAQLEGEL 69
++C IL FK IMLDCG+ L M LP
Sbjct: 24 GRSCIILEFKGRKIMLDCGIHPGLEGMDALP----------------------------- 54
Query: 70 KECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYAT 127
++D L+D +E++++LIS++ ALP+ + T F+G + T
Sbjct: 55 -------YID-----------LIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMT 96
Query: 128 EPTLQIGKFYLEELVQ 143
T I ++ L + V+
Sbjct: 97 HATKAIYRWLLSDYVK 112
>sp|Q9UKF6|CPSF3_HUMAN Cleavage and polyadenylation specificity factor subunit 3 OS=Homo
sapiens GN=CPSF3 PE=1 SV=1
Length = 684
Score = 33.5 bits (75), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 54/136 (39%), Gaps = 50/136 (36%)
Query: 11 NKACYILRFKEMTIMLDCGLC-ALPLMHFLPLPIIPTAKFNNLPSWIPRECTEAQLEGEL 69
++C IL FK IMLDCG+ L M LP
Sbjct: 24 GRSCIILEFKGRKIMLDCGIHPGLEGMDALP----------------------------- 54
Query: 70 KECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYAT 127
++D L+D +E++++LIS++ ALP+ + T F+G + T
Sbjct: 55 -------YID-----------LIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMT 96
Query: 128 EPTLQIGKFYLEELVQ 143
T I ++ L + V+
Sbjct: 97 HATKAIYRWLLSDYVK 112
>sp|Q6LTK4|FADI_PHOPR 3-ketoacyl-CoA thiolase OS=Photobacterium profundum GN=fadI PE=3
SV=1
Length = 436
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 106 LSMLALPFITEGTGFEGVVYATEPTLQIGKFYLEELVQYIEKTPKL 151
+S L PF + T F GV P L +GK + E++Q ++ PKL
Sbjct: 18 VSGLRTPFARQATAFNGV-----PALDMGKMVVNEMLQELDFDPKL 58
>sp|Q55BS1|CPSF2_DICDI Cleavage and polyadenylation specificity factor subunit 2
OS=Dictyostelium discoideum GN=cpsf2 PE=3 SV=1
Length = 784
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Query: 87 PLSQLVDFSEVNMILISNYLSMLALPFITEGTGFEGVVYATEPTLQIGKFYLEELVQYIE 146
PL ++ + ++ S+ + LP++ G G +Y T P L++G +L +L +
Sbjct: 47 PLEKVAKKIDAVLLSHSDTTHIGGLPYVVGKYGLTGTIYGTTPVLKMGTMFLYDLYENKM 106
Query: 147 KTPKLTSASHWKDISHLISPFSED-IKPRSWRQLYNL 182
+ S + ++ S F ED K S+ Q Y+L
Sbjct: 107 SQEEFQQYS----LDNIDSCFGEDRFKELSFSQHYSL 139
>sp|Q6BMW3|YSH1_DEBHA Endoribonuclease YSH1 OS=Debaryomyces hansenii (strain ATCC 36239 /
CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=YSH1 PE=3
SV=2
Length = 815
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 93 DFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQIGKFYLEELVQ 143
D S+V+++L+S++ +LP++ + T F G V+ T T I ++ L + V+
Sbjct: 62 DLSKVDILLVSHFHLDHAASLPYVMQHTNFNGRVFMTHATKAIYRWLLSDFVK 114
>sp|Q775Q3|RP132_CAMPS DNA-directed RNA polymerase 132 kDa polypeptide OS=Camelpox virus
(strain CMS) GN=RPO132 PE=3 SV=1
Length = 1164
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 11/100 (11%)
Query: 88 LSQLVDFSEVNMILISNYLSMLALPFITEGTGFE---GVVYATEPTLQIGKFYLEELVQY 144
+S F VN++L+S YLS ++L FI ++ VVY + K E + +
Sbjct: 222 ISSTKTFITVNIVLLSQYLSRVSLEFIRRSLSYDMPPEVVYLVNAIIDSAKRLTESITDF 281
Query: 145 IEKT--PKLTSASHWKDISHLISPFSEDIKPRSWRQLYNL 182
T L A H K S L I + LYN
Sbjct: 282 NIDTYINDLVEAEHIKQKSQLT------INEFKYEMLYNF 315
>sp|Q8V2N1|RP132_CAMPM DNA-directed RNA polymerase 132 kDa polypeptide OS=Camelpox virus
(strain M-96) GN=RPO132 PE=3 SV=1
Length = 1164
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 11/100 (11%)
Query: 88 LSQLVDFSEVNMILISNYLSMLALPFITEGTGFE---GVVYATEPTLQIGKFYLEELVQY 144
+S F VN++L+S YLS ++L FI ++ VVY + K E + +
Sbjct: 222 ISSTKTFITVNIVLLSQYLSRVSLEFIRRSLSYDMPPEVVYLVNAIIDSAKRLTESITDF 281
Query: 145 IEKT--PKLTSASHWKDISHLISPFSEDIKPRSWRQLYNL 182
T L A H K S L I + LYN
Sbjct: 282 NIDTYINDLVEAEHIKQKSQLT------INEFKYEMLYNF 315
>sp|Q8V4V3|RP132_MONPV DNA-directed RNA polymerase 132 kDa polypeptide OS=Monkeypox virus
GN=RPO132 PE=3 SV=1
Length = 1164
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 88 LSQLVDFSEVNMILISNYLSMLALPFITEGTGFE---GVVYATEPTLQIGKFYLEELVQY 144
+S F VN++L+S YLS ++L FI ++ VVY + K E + +
Sbjct: 222 ISSTKTFITVNIVLLSQYLSRVSLEFIRRSLSYDMPPEVVYLVNAIIDSAKRLTESITDF 281
Query: 145 IEKT--PKLTSASHWKDISHL 163
T L A H K S L
Sbjct: 282 DIDTYINDLVEAEHIKQKSQL 302
>sp|O57230|RP132_VACCA DNA-directed RNA polymerase 133 kDa polypeptide OS=Vaccinia virus
(strain Ankara) GN=RPO132 PE=3 SV=1
Length = 1156
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 88 LSQLVDFSEVNMILISNYLSMLALPFITEGTGFE---GVVYATEPTLQIGKFYLEELVQY 144
+S F VN++L+S YLS ++L FI ++ VVY + K E + +
Sbjct: 214 ISSTKTFITVNIVLLSQYLSRVSLEFIRRSLSYDMPPEVVYLVNAIIDSAKRITESITDF 273
Query: 145 IEKT--PKLTSASHWKDISHL 163
T L A H K S L
Sbjct: 274 NIDTYINDLVEAEHIKQKSQL 294
>sp|Q8JL90|RP132_ECTVM DNA-directed RNA polymerase 132 kDa polypeptide OS=Ectromelia virus
(strain Moscow) GN=RPO132 PE=3 SV=1
Length = 1164
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 88 LSQLVDFSEVNMILISNYLSMLALPFITEGTGFE---GVVYATEPTLQIGKFYLEELVQY 144
+S F VN++L+S YLS ++L FI ++ VVY + K E + +
Sbjct: 222 ISSTKTFITVNIVLLSQYLSRVSLEFIRRSLSYDMPPEVVYLVNAIIDSAKRITESITDF 281
Query: 145 IEKT--PKLTSASHWKDISHL 163
T L A H K S L
Sbjct: 282 NIDTYINDLVEAEHIKQKSQL 302
>sp|P17474|RP132_CWPXB DNA-directed RNA polymerase 132 kDa polypeptide OS=Cowpox virus
(strain Brighton Red) GN=RPO132 PE=3 SV=1
Length = 1164
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 88 LSQLVDFSEVNMILISNYLSMLALPFITEGTGFE---GVVYATEPTLQIGKFYLEELVQY 144
+S F VN++L+S YLS ++L FI ++ VVY + K E + +
Sbjct: 222 ISSTKTFITVNIVLLSQYLSRVSLEFIRRSLSYDMPPEVVYLVNAIIDSAKRLTESITDF 281
Query: 145 IEKT--PKLTSASHWKDISHL 163
T L A H K S L
Sbjct: 282 NIDTYINDLVEAEHIKQKSQL 302
>sp|Q76ZP7|RP132_VACCW DNA-directed RNA polymerase 133 kDa polypeptide OS=Vaccinia virus
(strain Western Reserve) GN=RPO132 PE=1 SV=1
Length = 1164
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 88 LSQLVDFSEVNMILISNYLSMLALPFITEGTGFE---GVVYATEPTLQIGKFYLEELVQY 144
+S F VN++L+S YLS ++L FI ++ VVY + K E + +
Sbjct: 222 ISSTKTFITVNIVLLSQYLSRVSLEFIRRSLSYDMPPEVVYLVNAIIDSAKRITESITDF 281
Query: 145 IEKT--PKLTSASHWKDISHL 163
T L A H K S L
Sbjct: 282 NIDTYINDLVEAEHIKQKSQL 302
>sp|P68694|RP132_VACCC DNA-directed RNA polymerase 133 kDa polypeptide OS=Vaccinia virus
(strain Copenhagen) GN=RPO132 PE=3 SV=1
Length = 1164
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 88 LSQLVDFSEVNMILISNYLSMLALPFITEGTGFE---GVVYATEPTLQIGKFYLEELVQY 144
+S F VN++L+S YLS ++L FI ++ VVY + K E + +
Sbjct: 222 ISSTKTFITVNIVLLSQYLSRVSLEFIRRSLSYDMPPEVVYLVNAIIDSAKRITESITDF 281
Query: 145 IEKT--PKLTSASHWKDISHL 163
T L A H K S L
Sbjct: 282 NIDTYINDLVEAEHIKQKSQL 302
>sp|Q9JF79|RP132_VACCT DNA-directed RNA polymerase 133 kDa polypeptide OS=Vaccinia virus
(strain Tian Tan) GN=RPO132 PE=3 SV=1
Length = 1164
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 88 LSQLVDFSEVNMILISNYLSMLALPFITEGTGFE---GVVYATEPTLQIGKFYLEELVQY 144
+S F VN++L+S YLS ++L FI ++ VVY + K E + +
Sbjct: 222 ISSTKTFITVNIVLLSQYLSRVSLEFIRRSLSYDMPPEVVYLVNAIIDSAKRITESITDF 281
Query: 145 IEKT--PKLTSASHWKDISHL 163
T L A H K S L
Sbjct: 282 NIDTYINDLVEAEHIKQKSQL 302
>sp|Q80DV1|RP132_CWPXG DNA-directed RNA polymerase 132 kDa polypeptide OS=Cowpox virus
(strain GRI-90 / Grishak) GN=RPO132 PE=3 SV=1
Length = 1164
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 88 LSQLVDFSEVNMILISNYLSMLALPFITEGTGFE---GVVYATEPTLQIGKFYLEELVQY 144
+S F VN++L+S YLS ++L FI ++ VVY + K E + +
Sbjct: 222 ISSTKTFITVNIVLLSQYLSRVSLEFIRRSLSYDMPPEVVYLVNAIIDSAKRITESITDF 281
Query: 145 IEKT--PKLTSASHWKDISHL 163
T L A H K S L
Sbjct: 282 NIDTYINDLVEAEHIKQKSQL 302
>sp|Q2KIG3|CBPB2_BOVIN Carboxypeptidase B2 OS=Bos taurus GN=CPB2 PE=1 SV=1
Length = 423
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 66 EGELKECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSM 108
EG C +++ + PE +P + + DF N+ I Y+SM
Sbjct: 267 EGASSSSCSEIYCGTYPESEPEVKAVADFLRRNIKHIKAYISM 309
>sp|Q6RZF8|RP132_RABPU DNA-directed RNA polymerase 132 kDa polypeptide OS=Rabbitpox virus
(strain Utrecht) GN=RPO132 PE=3 SV=1
Length = 1164
Score = 31.6 bits (70), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 88 LSQLVDFSEVNMILISNYLSMLALPFITEGTGFE---GVVYATEPTLQIGKFYLEELVQY 144
+S F VN++L+S YLS ++L FI ++ VVY + K E + +
Sbjct: 222 ISSTKTFITVNIVLLSQYLSRVSLEFIRRSLSYDMPPEVVYLVNAIIDSAKRITESITDF 281
Query: 145 IEKT--PKLTSASHWKDISHL 163
T L A H K S L
Sbjct: 282 NIDTYINDLVEAEHIKQKSQL 302
>sp|P33811|RP132_VAR67 DNA-directed RNA polymerase 133 kDa polypeptide OS=Variola virus
(isolate Human/India/Ind3/1967) GN=RPO132 PE=3 SV=3
Length = 1164
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 88 LSQLVDFSEVNMILISNYLSMLALPFITEGTGFE---GVVYATEPTLQIGKFYLEELVQY 144
+S F VN++L+S YLS ++L FI ++ VVY + K E + +
Sbjct: 222 ISSTKTFITVNIVLLSQYLSRVSLGFIRRSLSYDMPPEVVYLVNAIIDSAKRLTESITDF 281
Query: 145 IEKT--PKLTSASHWKDISHL 163
T L A H K S L
Sbjct: 282 NIDTYINDLVEAEHVKQKSQL 302
>sp|O35218|CPSF2_MOUSE Cleavage and polyadenylation specificity factor subunit 2 OS=Mus
musculus GN=Cpsf2 PE=1 SV=1
Length = 782
Score = 31.6 bits (70), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 96 EVNMILIS--NYLSMLALPFITEGTGFEGVVYATEPTLQIGKFYLEELVQYIEKTPKLT 152
+++ +L+S + L + ALPF G +YAT P ++G+ ++ +L Q T T
Sbjct: 54 QIDAVLLSHPDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFT 112
>sp|Q8WZS6|YSH1_NEUCR Endoribonuclease ysh-1 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ysh-1
PE=3 SV=1
Length = 850
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 93 DFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQIGKFYLEELVQYIEKTPK 150
D S V+++LIS++ +LP++ T F G V+ T T I K+ +++ V+ +
Sbjct: 72 DLSTVDVLLISHFHIDHAASLPYVLAKTNFRGRVFMTHATKAIYKWLIQDSVRVGNTSSN 131
Query: 151 LTSASHWKDISHL 163
S+ + + HL
Sbjct: 132 PQSSLVYTEEDHL 144
>sp|Q2YDM2|INT11_BOVIN Integrator complex subunit 11 OS=Bos taurus GN=CPSF3L PE=2 SV=2
Length = 599
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 89 SQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQIGKFYLEE 140
+L DF ++ ++IS++ ALP+ +E G++G +Y T+PT I LE+
Sbjct: 55 GRLTDF--LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLED 106
>sp|P20166|PTG3C_BACSU PTS system glucose-specific EIICBA component OS=Bacillus subtilis
(strain 168) GN=ptsG PE=1 SV=2
Length = 699
Score = 31.2 bits (69), Expect = 4.7, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 17/80 (21%)
Query: 105 YLSMLALPFITEGTGFEGVVYATEPTLQIGKFYLEELVQYI------EKTPKLTSASH-- 156
Y++ML +P + G F G++ L +FY EL QY+ P +TS S
Sbjct: 133 YVNMLGIPTLATGV-FGGIIVGVLAALLFNRFYTIELPQYLGFFAGKRFVPIVTSISALI 191
Query: 157 --------WKDISHLISPFS 168
W I H ++ FS
Sbjct: 192 LGLIMLVIWPPIQHGLNAFS 211
>sp|Q8UN02|GAG80_MLVMN Glycosylated Gag polyprotein OS=Moloney murine leukemia virus
(strain neuropathogenic variant ts1-92b) GN=gag PE=3
SV=1
Length = 626
Score = 30.8 bits (68), Expect = 6.6, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 136 FYLEELVQYIEKTPKLTSASHWKDISHLISPFSEDIKPRSW 176
YL E + TP + HWKD+ + S D+K R W
Sbjct: 83 LYLSENMGQTVTTPLSLTLDHWKDVERIAHNQSVDVKKRRW 123
>sp|Q54YL3|INT11_DICDI Integrator complex subunit 11 homolog OS=Dictyostelium discoideum
GN=ints11 PE=3 SV=1
Length = 744
Score = 30.8 bits (68), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 110 ALPFITEGTGFEGVVYATEPTLQIGKFYLEE 140
ALPF TE G++G +Y T PT I LE+
Sbjct: 75 ALPFFTEMCGYDGPIYMTLPTKAICPILLED 105
>sp|Q5TA45|INT11_HUMAN Integrator complex subunit 11 OS=Homo sapiens GN=CPSF3L PE=1 SV=2
Length = 600
Score = 30.8 bits (68), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 89 SQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQIGKFYLEE 140
+L DF ++ ++IS++ ALP+ +E G++G +Y T PT I LE+
Sbjct: 55 GRLTDF--LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLED 106
>sp|Q5NVE6|INT11_PONAB Integrator complex subunit 11 OS=Pongo abelii GN=CPSF3L PE=2 SV=2
Length = 600
Score = 30.8 bits (68), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 89 SQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQIGKFYLEE 140
+L DF ++ ++IS++ ALP+ +E G++G +Y T PT I LE+
Sbjct: 55 GRLTDF--LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLED 106
>sp|Q3MHC2|INT11_RAT Integrator complex subunit 11 OS=Rattus norvegicus GN=Cpsf3l PE=2
SV=1
Length = 600
Score = 30.4 bits (67), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 89 SQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQIGKFYLEE 140
+L DF ++ ++IS++ ALP+ +E G++G +Y T PT I LE+
Sbjct: 55 GRLTDF--LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLED 106
>sp|Q9CWS4|INT11_MOUSE Integrator complex subunit 11 OS=Mus musculus GN=Cpsf3l PE=2 SV=1
Length = 600
Score = 30.4 bits (67), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 89 SQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQIGKFYLEE 140
+L DF ++ ++IS++ ALP+ +E G++G +Y T PT I LE+
Sbjct: 55 GRLTDF--LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLED 106
>sp|Q5ZIH0|INT11_CHICK Integrator complex subunit 11 OS=Gallus gallus GN=CPSF3L PE=2 SV=1
Length = 600
Score = 30.4 bits (67), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 89 SQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQIGKFYLEE 140
+L DF ++ ++IS++ ALP+ +E G++G +Y T PT I LE+
Sbjct: 55 GRLTDF--LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLED 106
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,730,550
Number of Sequences: 539616
Number of extensions: 3186369
Number of successful extensions: 6583
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 6510
Number of HSP's gapped (non-prelim): 101
length of query: 203
length of database: 191,569,459
effective HSP length: 112
effective length of query: 91
effective length of database: 131,132,467
effective search space: 11933054497
effective search space used: 11933054497
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)