Query psy9121
Match_columns 203
No_of_seqs 142 out of 1249
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 19:27:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9121.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9121hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1138|consensus 100.0 2.1E-49 4.6E-54 361.3 11.6 203 1-203 1-206 (653)
2 KOG1136|consensus 100.0 6.3E-29 1.4E-33 219.4 12.6 136 1-202 4-143 (501)
3 COG1782 Predicted metal-depend 100.0 7.4E-29 1.6E-33 227.5 13.0 129 2-201 182-314 (637)
4 KOG1137|consensus 99.9 1.4E-26 3E-31 213.8 4.5 129 2-202 15-147 (668)
5 TIGR03675 arCOG00543 arCOG0054 99.9 1.5E-24 3.4E-29 207.4 13.9 131 1-202 175-309 (630)
6 COG1236 YSH1 Predicted exonucl 99.9 6.6E-23 1.4E-27 188.5 13.3 126 1-203 1-130 (427)
7 KOG1135|consensus 99.9 4.3E-22 9.4E-27 187.6 11.3 126 3-202 5-133 (764)
8 TIGR00649 MG423 conserved hypo 99.4 1.1E-12 2.4E-17 120.2 10.3 95 1-138 1-101 (422)
9 PRK00055 ribonuclease Z; Revie 99.4 9.6E-13 2.1E-17 111.9 6.3 84 1-135 2-99 (270)
10 PRK11244 phnP carbon-phosphoru 99.3 1E-11 2.2E-16 105.9 8.4 80 1-135 1-107 (250)
11 TIGR02651 RNase_Z ribonuclease 99.2 1.2E-11 2.5E-16 107.6 6.0 82 2-134 1-96 (299)
12 COG0595 mRNA degradation ribon 99.2 5.3E-11 1.1E-15 112.9 9.2 97 1-140 9-111 (555)
13 PRK02113 putative hydrolase; P 99.1 9.6E-11 2.1E-15 99.7 7.5 41 93-133 63-106 (252)
14 TIGR02649 true_RNase_BN ribonu 99.1 7.5E-11 1.6E-15 103.5 5.9 82 3-135 1-100 (303)
15 PRK05184 pyrroloquinoline quin 99.1 1.1E-10 2.4E-15 103.1 6.6 42 91-134 75-118 (302)
16 COG1234 ElaC Metal-dependent h 99.0 6.9E-10 1.5E-14 97.8 4.9 82 1-133 2-97 (292)
17 COG1237 Metal-dependent hydrol 98.9 3.2E-09 6.9E-14 91.7 7.9 84 1-132 1-96 (259)
18 TIGR03307 PhnP phosphonate met 98.9 4.3E-09 9.4E-14 89.0 7.5 69 10-133 25-95 (238)
19 PRK00685 metal-dependent hydro 98.9 9.7E-09 2.1E-13 85.7 9.2 75 1-133 1-77 (228)
20 PRK04286 hypothetical protein; 98.8 4.5E-09 9.8E-14 92.7 5.3 97 1-131 1-105 (298)
21 smart00849 Lactamase_B Metallo 98.8 1.4E-08 3E-13 80.2 7.1 75 10-135 4-80 (183)
22 TIGR02108 PQQ_syn_pqqB coenzym 98.8 7.1E-09 1.5E-13 91.8 5.2 42 91-134 74-117 (302)
23 PF00753 Lactamase_B: Metallo- 98.6 1.4E-08 3E-13 79.5 1.8 83 10-141 4-89 (194)
24 COG1235 PhnP Metal-dependent h 98.5 8.9E-08 1.9E-12 82.9 3.5 91 1-135 4-101 (269)
25 PRK02126 ribonuclease Z; Provi 98.4 1E-06 2.2E-11 79.2 8.3 46 93-138 44-94 (334)
26 PRK11921 metallo-beta-lactamas 98.3 1.5E-06 3.2E-11 79.3 6.9 41 92-133 65-107 (394)
27 PF12706 Lactamase_B_2: Beta-l 98.2 5.9E-07 1.3E-11 72.3 2.4 41 95-135 28-71 (194)
28 PRK05452 anaerobic nitric oxid 98.1 5.8E-06 1.3E-10 77.6 7.2 41 92-133 67-109 (479)
29 TIGR00361 ComEC_Rec2 DNA inter 97.9 7.3E-05 1.6E-09 72.7 9.6 71 12-127 450-522 (662)
30 PF13483 Lactamase_B_3: Beta-l 97.8 7.4E-05 1.6E-09 59.5 6.4 25 2-30 1-25 (163)
31 PRK11709 putative L-ascorbate 97.7 0.00012 2.7E-09 66.3 8.3 41 93-133 106-150 (355)
32 PRK11539 ComEC family competen 97.7 0.00019 4.2E-09 70.8 9.4 81 2-128 502-584 (755)
33 TIGR03413 GSH_gloB hydroxyacyl 97.7 0.00015 3.2E-09 62.2 7.2 33 96-130 43-77 (248)
34 PRK10241 hydroxyacylglutathion 97.6 0.00022 4.7E-09 61.4 7.9 34 96-130 45-80 (251)
35 COG0426 FpaA Uncharacterized f 97.5 0.00025 5.5E-09 64.9 7.0 85 9-142 33-119 (388)
36 KOG2121|consensus 97.4 3.6E-05 7.7E-10 74.7 0.1 100 1-146 443-553 (746)
37 PLN02469 hydroxyacylglutathion 97.4 0.00032 6.9E-09 60.9 5.5 34 95-129 45-80 (258)
38 COG0491 GloB Zn-dependent hydr 97.4 0.0014 3.1E-08 53.7 9.0 37 96-133 62-100 (252)
39 COG2220 Predicted Zn-dependent 97.3 0.00055 1.2E-08 58.6 6.7 81 1-131 7-88 (258)
40 COG2248 Predicted hydrolase (m 97.1 0.00098 2.1E-08 58.1 5.9 35 1-35 1-38 (304)
41 COG2333 ComEC Predicted hydrol 96.9 0.002 4.3E-08 57.2 6.1 40 86-126 80-121 (293)
42 PLN02398 hydroxyacylglutathion 96.6 0.011 2.4E-07 53.3 8.4 35 95-131 120-156 (329)
43 TIGR02650 RNase_Z_T_toga ribon 96.2 0.0051 1.1E-07 54.2 3.8 40 94-133 38-85 (277)
44 PLN02962 hydroxyacylglutathion 95.9 0.034 7.3E-07 48.2 7.6 32 96-128 61-94 (251)
45 PF13691 Lactamase_B_4: tRNase 95.3 0.053 1.1E-06 37.5 5.1 22 12-33 12-34 (63)
46 PF02112 PDEase_II: cAMP phosp 94.2 0.14 3.1E-06 46.3 6.6 41 95-135 78-124 (335)
47 KOG0813|consensus 92.9 0.11 2.4E-06 45.6 3.6 34 95-128 50-85 (265)
48 KOG1137|consensus 85.3 4.8 0.0001 39.0 8.3 49 95-143 206-261 (668)
49 KOG3592|consensus 80.6 1.3 2.8E-05 44.0 2.6 28 3-31 40-67 (934)
50 KOG3798|consensus 66.9 8.6 0.00019 34.1 4.1 21 86-106 122-142 (343)
51 KOG4736|consensus 62.1 11 0.00023 33.8 3.9 21 91-111 120-142 (302)
52 PF14597 Lactamase_B_5: Metall 52.1 8.6 0.00019 32.3 1.5 40 94-135 53-92 (199)
53 cd06908 M14_AGBL4_like Peptida 43.7 38 0.00082 29.6 4.3 33 2-34 13-56 (261)
54 PF13911 AhpC-TSA_2: AhpC/TSA 39.7 29 0.00064 25.5 2.7 46 92-139 9-55 (115)
55 cd06907 M14_AGBL2-3_like Pepti 37.9 53 0.0011 28.8 4.3 33 2-34 15-59 (261)
56 KOG1361|consensus 35.6 21 0.00046 34.0 1.6 39 96-139 112-153 (481)
57 cd06234 M14_Nna1_like_1 A bact 33.5 73 0.0016 27.8 4.5 34 1-34 29-68 (263)
58 COG5212 PDE1 Low-affinity cAMP 31.3 30 0.00065 31.1 1.7 40 94-135 110-155 (356)
59 PTZ00065 60S ribosomal protein 23.2 1.2E+02 0.0026 23.9 3.6 26 4-29 16-42 (130)
60 cd06235 M14_Nna1_like_2 Subgro 22.3 1.4E+02 0.0029 25.9 4.2 34 1-34 13-58 (258)
61 cd06905 Peptidase_M14-like_8 A 22.3 1.4E+02 0.003 27.3 4.4 34 1-34 25-68 (360)
62 PF00797 Acetyltransf_2: N-ace 21.0 1.2E+02 0.0027 25.1 3.6 26 175-200 213-238 (240)
No 1
>KOG1138|consensus
Probab=100.00 E-value=2.1e-49 Score=361.31 Aligned_cols=203 Identities=46% Similarity=0.796 Sum_probs=195.6
Q ss_pred CEEEEecCCCCCCeEEEEeCCeEEEEeCCCCCccccccCCCCccCCcccCCCCCCCcccchhhhhhhhhhhhcCcccccC
Q psy9121 1 MKVYSLSSHPNKACYILRFKEMTIMLDCGLCALPLMHFLPLPIIPTAKFNNLPSWIPRECTEAQLEGELKECCGKVFVDS 80 (203)
Q Consensus 1 Mkl~~LG~~~~~sc~ll~~~~~~ILlDCGl~~~~~~~f~p~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vds 80 (203)
|++|++....+-+|.++++...+||+|||+++++.+.|||+|.+||+|.+++|+|.+..+++.+++.++|+++|||||||
T Consensus 1 M~~t~~sv~~t~pc~llk~~~~rIllDcpld~t~~~nFlPlp~~qSpr~~n~p~~~~~~d~~kfq~~elke~~~rvfves 80 (653)
T KOG1138|consen 1 MEGTIGSVSSTYPCKLLKLQRRRILLDCPLDLTAILNFLPLPGVQSPRYSNLPSLDAQNDIQKFQDLELKECCGRVFVES 80 (653)
T ss_pred CceEEEeeccCCCchheeccceeEEecCCcchhhhhccccCccccCcccccCccccccCccchhhhHHHHHhCCceEEcC
Confidence 89999999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCccEEEEcCCCCccchHHHHhhcCCCCcEEecchhHHHHHhhHHHHHHHHhhccccccccchhhh
Q psy9121 81 APEFQPPLSQLVDFSEVNMILISNYLSMLALPFITEGTGFEGVVYATEPTLQIGKFYLEELVQYIEKTPKLTSASHWKDI 160 (203)
Q Consensus 81 ~~~~~~p~~~~~d~~~IDaVlISH~Hh~g~LP~l~~~~~f~g~IYaT~pT~~l~~lll~d~~~~~~~~~~~~~~~~~~~~ 160 (203)
+|+|++|..+.+|.++||+|||||+|.+.||||+|++.||.|+||||+||+|+||++|||++.+++|.+++.++..||+.
T Consensus 81 ppe~~l~~t~lld~stiDvILISNy~~mlgLPfiTentGF~gkiY~TE~t~qiGrllMEelv~fier~p~~~S~~~Wk~k 160 (653)
T KOG1138|consen 81 PPEFTLPATHLLDASTIDVILISNYMGMLGLPFITENTGFFGKIYATEPTAQIGRLLMEELVSFIERFPKASSAPLWKKK 160 (653)
T ss_pred CchhccchhhhhcccceeEEEEcchhhhcccceeecCCCceeEEEEechHHHHHHHHHHHHHHHHHhccccccchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999955
Q ss_pred --cccc-CCCccCCCCCcCCCCCCHHHHHHHHhcceeecCCcEEeC
Q psy9121 161 --SHLI-SPFSEDIKPRSWRQLYNLQSVYASLARVQMVGYDEKLYY 203 (203)
Q Consensus 161 --~~~l-~~~~~~~~~~~~~~lYt~~Dv~~~l~~i~~v~Y~e~i~~ 203 (203)
.+.+ +|+++..+...|+++||.+||+.|++||++|.|+|+|++
T Consensus 161 ~~~~~lpsplk~~~~~~~Wr~~ysl~Dv~sclsKVq~v~f~ekidl 206 (653)
T KOG1138|consen 161 LDSELLPSPLKKAVFLGSWRRLYSLDDVESCLSKVQGVGFAEKIDL 206 (653)
T ss_pred hhhhhcCCCchhhccccceeeeeehhHHHHHHHhheecccceeeec
Confidence 5555 688988899999999999999999999999999999985
No 2
>KOG1136|consensus
Probab=99.96 E-value=6.3e-29 Score=219.39 Aligned_cols=136 Identities=21% Similarity=0.400 Sum_probs=111.2
Q ss_pred CEEEEecCC--CCCCeEEEEeCCeEEEEeCCCCCccccccCCCCccCCcccCCCCCCCcccchhhhhhhhhhhhcCcccc
Q psy9121 1 MKVYSLSSH--PNKACYILRFKEMTIMLDCGLCALPLMHFLPLPIIPTAKFNNLPSWIPRECTEAQLEGELKECCGKVFV 78 (203)
Q Consensus 1 Mkl~~LG~~--~~~sc~ll~~~~~~ILlDCGl~~~~~~~f~p~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v 78 (203)
|++++||++ +|+||+|+.++|.+||+|||++++-- + -.+.|+++- |
T Consensus 4 i~v~pLGAGQdvGrSCilvsi~Gk~iM~DCGMHMG~n----------D--~rRfPdFSy--------------------I 51 (501)
T KOG1136|consen 4 IKVTPLGAGQDVGRSCILVSIGGKNIMFDCGMHMGFN----------D--DRRFPDFSY--------------------I 51 (501)
T ss_pred ceEEeccCCcccCceEEEEEECCcEEEEecccccccC----------c--cccCCCcee--------------------e
Confidence 689999998 99999999999999999999998721 1 123444320 0
Q ss_pred cCCCCCCCCCCCCCCCCCccEEEEcCCC--CccchHHHHhhcCCCCcEEecchhHHHHHhhHHHHHHHHhhccccccccc
Q psy9121 79 DSAPEFQPPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQIGKFYLEELVQYIEKTPKLTSASH 156 (203)
Q Consensus 79 ds~~~~~~p~~~~~d~~~IDaVlISH~H--h~g~LP~l~~~~~f~g~IYaT~pT~~l~~lll~d~~~~~~~~~~~~~~~~ 156 (203)
.. -..++ +.||+|+|||+| |+|+|||++|..||.||||+|.||++++++||||+-+++-..
T Consensus 52 ~~--------~g~~~-~~idCvIIsHFHlDHcGaLPyfsEv~GY~GPIYMt~PTkaicPvlLeDyRkv~vd~-------- 114 (501)
T KOG1136|consen 52 SK--------SGRFT-DAIDCVIISHFHLDHCGALPYFSEVVGYDGPIYMTYPTKAICPVLLEDYRKVAVDR-------- 114 (501)
T ss_pred cC--------CCCcc-cceeEEEEeeecccccccccchHhhhCCCCceEEecchhhhchHHHHHHHHHhccc--------
Confidence 00 01222 579999999999 999999999999999999999999999999999999876521
Q ss_pred hhhhccccCCCccCCCCCcCCCCCCHHHHHHHHhcceeecCCcEEe
Q psy9121 157 WKDISHLISPFSEDIKPRSWRQLYNLQSVYASLARVQMVGYDEKLY 202 (203)
Q Consensus 157 ~~~~~~~l~~~~~~~~~~~~~~lYt~~Dv~~~l~~i~~v~Y~e~i~ 202 (203)
.+...+||.+|+.+||+++.++..+|++.
T Consensus 115 -----------------kGe~n~FT~q~I~nCMKKVv~i~l~qt~~ 143 (501)
T KOG1136|consen 115 -----------------KGESNFFTTQDIKNCMKKVVAIDLHQTIQ 143 (501)
T ss_pred -----------------cCcccceeHHHHHHHHhheeEeeehheEE
Confidence 13556899999999999999999999874
No 3
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=99.96 E-value=7.4e-29 Score=227.48 Aligned_cols=129 Identities=23% Similarity=0.375 Sum_probs=115.2
Q ss_pred EEEEecCC--CCCCeEEEEeCCeEEEEeCCCCCccccccCCCCccCCcccCCCCCCCcccchhhhhhhhhhhhcCccccc
Q psy9121 2 KVYSLSSH--PNKACYILRFKEMTIMLDCGLCALPLMHFLPLPIIPTAKFNNLPSWIPRECTEAQLEGELKECCGKVFVD 79 (203)
Q Consensus 2 kl~~LG~~--~~~sc~ll~~~~~~ILlDCGl~~~~~~~f~p~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vd 79 (203)
++|+|||. ||+||+||++.+.+||||||+..++ + + -|
T Consensus 182 Rvt~LGg~~EVGRSa~lv~T~eSrVLlDcG~n~a~----------------~-~------------------------~~ 220 (637)
T COG1782 182 RVTALGGFREVGRSALLVSTPESRVLLDCGVNVAG----------------N-G------------------------ED 220 (637)
T ss_pred EEEeeccchhccceeEEEecCCceEEEeccccCCC----------------C-c------------------------cc
Confidence 68999997 9999999999999999999998652 0 0 05
Q ss_pred CCCCCCCCCCCCCCCCCccEEEEcCCC--CccchHHHHhhcCCCCcEEecchhHHHHHhhHHHHHHHHhhccccccccch
Q psy9121 80 SAPEFQPPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQIGKFYLEELVQYIEKTPKLTSASHW 157 (203)
Q Consensus 80 s~~~~~~p~~~~~d~~~IDaVlISH~H--h~g~LP~l~~~~~f~g~IYaT~pT~~l~~lll~d~~~~~~~~~~~~~~~~~ 157 (203)
+.|.++.|++.. ..+|||+|||+| |+|.||+|++ +||+||||||+||++++-+|..|++++.+++
T Consensus 221 ~~Pyl~vpE~~~---~~lDAViiTHAHLDH~G~lP~Lfk-Ygy~GPVY~T~PTRDlm~LLq~Dyi~va~ke--------- 287 (637)
T COG1782 221 AFPYLDVPEFQP---DELDAVIITHAHLDHCGFLPLLFK-YGYDGPVYCTPPTRDLMVLLQLDYIEVAEKE--------- 287 (637)
T ss_pred cCcccccccccc---cccceEEEeecccccccchhhhhh-cCCCCCeeeCCCcHHHHHHHHHHHHHHHHhc---------
Confidence 778888898774 399999999999 9999999997 8999999999999999999999999998865
Q ss_pred hhhccccCCCccCCCCCcCCCCCCHHHHHHHHhcceeecCCcEE
Q psy9121 158 KDISHLISPFSEDIKPRSWRQLYNLQSVYASLARVQMVGYDEKL 201 (203)
Q Consensus 158 ~~~~~~l~~~~~~~~~~~~~~lYt~~Dv~~~l~~i~~v~Y~e~i 201 (203)
+..|.|+.+||++++.+..+++|+|.-
T Consensus 288 -----------------g~~ppY~~k~v~~~lkhtItldYgevT 314 (637)
T COG1782 288 -----------------GGEPPYESKDVRKVLKHTITLDYGEVT 314 (637)
T ss_pred -----------------CCCCCCCHHHHHHHHheeeeeccCccc
Confidence 466899999999999999999999863
No 4
>KOG1137|consensus
Probab=99.93 E-value=1.4e-26 Score=213.82 Aligned_cols=129 Identities=29% Similarity=0.525 Sum_probs=113.4
Q ss_pred EEEEecCC--CCCCeEEEEeCCeEEEEeCCCCCccccccCCCCccCCcccCCCCCCCcccchhhhhhhhhhhhcCccccc
Q psy9121 2 KVYSLSSH--PNKACYILRFKEMTIMLDCGLCALPLMHFLPLPIIPTAKFNNLPSWIPRECTEAQLEGELKECCGKVFVD 79 (203)
Q Consensus 2 kl~~LG~~--~~~sc~ll~~~~~~ILlDCGl~~~~~~~f~p~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vd 79 (203)
++++||++ |||||++|+++|.+||||||++++- + +. +
T Consensus 15 ~~~pLGag~EVGRSC~ile~kGk~iMld~gvhpay-----------s-g~-----------------------------a 53 (668)
T KOG1137|consen 15 KFTPLGAGNEVGRSCHILEYKGKTIMLDCGVHPAY-----------S-GM-----------------------------A 53 (668)
T ss_pred EEEECCCCcccCceEEEEEecCeEEEeccccCccc-----------c-cc-----------------------------c
Confidence 58999998 9999999999999999999999761 1 11 1
Q ss_pred CCCCCCCCCCCCCCCCCccEEEEcCCC--CccchHHHHhhcCCCCcEEecchhHHHHHhhHHHHHHHHhhccccccccch
Q psy9121 80 SAPEFQPPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQIGKFYLEELVQYIEKTPKLTSASHW 157 (203)
Q Consensus 80 s~~~~~~p~~~~~d~~~IDaVlISH~H--h~g~LP~l~~~~~f~g~IYaT~pT~~l~~lll~d~~~~~~~~~~~~~~~~~ 157 (203)
| +|.++.+|++.||+++|||+| |+++|||+++++.|+|++|+|.||+++.++++.|++++..++
T Consensus 54 s-----lpf~d~vd~s~id~llIthFhldh~aslp~~~qkTsf~grvfmth~TkAi~kwllsdyvrvs~~s--------- 119 (668)
T KOG1137|consen 54 S-----LPFYDEVDLSAIDPLLITHFHLDHAASLPFTLQKTSFIGRVFMTHPTKAIYKWLLSDYVRVSNRS--------- 119 (668)
T ss_pred c-----ccchhhcccccccHHHHhhhhhhhcccccceeeeccccceeEEecchHHHHHhhhhcceEeeecc---------
Confidence 2 466678999999999999999 999999999999999999999999999999999999864432
Q ss_pred hhhccccCCCccCCCCCcCCCCCCHHHHHHHHhcceeecCCcEEe
Q psy9121 158 KDISHLISPFSEDIKPRSWRQLYNLQSVYASLARVQMVGYDEKLY 202 (203)
Q Consensus 158 ~~~~~~l~~~~~~~~~~~~~~lYt~~Dv~~~l~~i~~v~Y~e~i~ 202 (203)
....+|+++|+.++++|++++.|+|+++
T Consensus 120 -----------------~~~~Ly~e~dl~~s~dKie~idfhe~~e 147 (668)
T KOG1137|consen 120 -----------------GDDRLYTEGDLMESMDKIETIDFHETVE 147 (668)
T ss_pred -----------------CccccccchhHHHhhhhheeeeeccccc
Confidence 2336999999999999999999999875
No 5
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=99.92 E-value=1.5e-24 Score=207.43 Aligned_cols=131 Identities=21% Similarity=0.363 Sum_probs=107.1
Q ss_pred CEEEEecCC--CCCCeEEEEeCCeEEEEeCCCCCccccccCCCCccCCcccCCCCCCCcccchhhhhhhhhhhhcCcccc
Q psy9121 1 MKVYSLSSH--PNKACYILRFKEMTIMLDCGLCALPLMHFLPLPIIPTAKFNNLPSWIPRECTEAQLEGELKECCGKVFV 78 (203)
Q Consensus 1 Mkl~~LG~~--~~~sc~ll~~~~~~ILlDCGl~~~~~~~f~p~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v 78 (203)
|+|++|||+ +|+|||+|+.++.+||||||++.... ...
T Consensus 175 m~i~~LGg~~eVG~Sc~Ll~~~~~~ILIDcG~~~~~~------------~~~---------------------------- 214 (630)
T TIGR03675 175 VRVTALGGFREVGRSALLLSTPESRILLDCGVNVGAN------------GDN---------------------------- 214 (630)
T ss_pred EEEEEEecCCccCCCEEEEEECCCEEEEECCCCcccc------------chh----------------------------
Confidence 789999997 99999999999999999999875410 000
Q ss_pred cCCCCCCCCCCCCCCCCCccEEEEcCCC--CccchHHHHhhcCCCCcEEecchhHHHHHhhHHHHHHHHhhccccccccc
Q psy9121 79 DSAPEFQPPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQIGKFYLEELVQYIEKTPKLTSASH 156 (203)
Q Consensus 79 ds~~~~~~p~~~~~d~~~IDaVlISH~H--h~g~LP~l~~~~~f~g~IYaT~pT~~l~~lll~d~~~~~~~~~~~~~~~~ 156 (203)
..|.+..+ .+++.+||+|||||+| |+|+||+|++ .||+|+||||+||++++++++.|++++..+.
T Consensus 215 -~~p~l~~~---~~~~~~IDaVlITHaH~DHiG~LP~L~k-~g~~gpIY~T~pT~~l~~~ll~D~~~i~~~~-------- 281 (630)
T TIGR03675 215 -AYPYLDVP---EFQLDELDAVVITHAHLDHSGLVPLLFK-YGYDGPVYCTPPTRDLMTLLQLDYIDVAQRE-------- 281 (630)
T ss_pred -hccccccc---CCCHHHCcEEEECCCCHHHHhhHHHHHH-hCCCCceeecHHHHHHHHHHHHHHHHHHHhc--------
Confidence 01111112 2346899999999999 9999999996 6899999999999999999999998875532
Q ss_pred hhhhccccCCCccCCCCCcCCCCCCHHHHHHHHhcceeecCCcEEe
Q psy9121 157 WKDISHLISPFSEDIKPRSWRQLYNLQSVYASLARVQMVGYDEKLY 202 (203)
Q Consensus 157 ~~~~~~~l~~~~~~~~~~~~~~lYt~~Dv~~~l~~i~~v~Y~e~i~ 202 (203)
+..++|+.+|+++++.++++++|+++++
T Consensus 282 ------------------g~~~~y~~~dv~~~~~~~~~l~yg~~~~ 309 (630)
T TIGR03675 282 ------------------GKKPPYSSKDVREALKHTITLDYGEVTD 309 (630)
T ss_pred ------------------CCCCCCCHHHHHHHHhccEEeCCCCeEE
Confidence 2457899999999999999999999865
No 6
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=6.6e-23 Score=188.54 Aligned_cols=126 Identities=27% Similarity=0.422 Sum_probs=105.6
Q ss_pred CEEEEecCC--CCCCeEEEEeCCeEEEEeCCCCCccccccCCCCccCCcccCCCCCCCcccchhhhhhhhhhhhcCcccc
Q psy9121 1 MKVYSLSSH--PNKACYILRFKEMTIMLDCGLCALPLMHFLPLPIIPTAKFNNLPSWIPRECTEAQLEGELKECCGKVFV 78 (203)
Q Consensus 1 Mkl~~LG~~--~~~sc~ll~~~~~~ILlDCGl~~~~~~~f~p~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v 78 (203)
|++.++|++ ++++|++|++++.+||+|||++++. .. ...
T Consensus 1 ~~~~~~g~~~evg~s~~~l~~~~~~il~D~G~~~~~------------~~-~~~-------------------------- 41 (427)
T COG1236 1 MTLRFLGAAREVGRSCVLLETGGTRILLDCGLFPGD------------PS-PER-------------------------- 41 (427)
T ss_pred CceecccccCCcCcEEEEEEECCceEEEECCCCcCc------------CC-ccC--------------------------
Confidence 788999987 9999999999999999999998752 10 111
Q ss_pred cCCCCCCCCCCCCCCCCCccEEEEcCCC--CccchHHHHhhcCCCCcEEecchhHHHHHhhHHHHHHHHhhccccccccc
Q psy9121 79 DSAPEFQPPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQIGKFYLEELVQYIEKTPKLTSASH 156 (203)
Q Consensus 79 ds~~~~~~p~~~~~d~~~IDaVlISH~H--h~g~LP~l~~~~~f~g~IYaT~pT~~l~~lll~d~~~~~~~~~~~~~~~~ 156 (203)
|.....+ +||||+|||+| |+||||+++.. +|+++||||+||+.++++++.|+++.+..
T Consensus 42 --------p~~~~~~--~vDavllTHaHlDH~g~lp~l~~~-~~~~~v~aT~~T~~l~~~~l~d~~~~~~~--------- 101 (427)
T COG1236 42 --------PLLPPFP--KVDAVLLTHAHLDHIGALPYLVRN-GFEGPVYATPPTAALLKVLLGDSLKLAEG--------- 101 (427)
T ss_pred --------CCCCCCC--CcCEEEeccCchhhhcccHHHHHh-ccCCceeeccCHHHHHHHHHHHHHhhhcC---------
Confidence 1112122 89999999999 99999999974 58899999999999999999999997542
Q ss_pred hhhhccccCCCccCCCCCcCCCCCCHHHHHHHHhcceeecCCcEEeC
Q psy9121 157 WKDISHLISPFSEDIKPRSWRQLYNLQSVYASLARVQMVGYDEKLYY 203 (203)
Q Consensus 157 ~~~~~~~l~~~~~~~~~~~~~~lYt~~Dv~~~l~~i~~v~Y~e~i~~ 203 (203)
...++|+++|++.+++++++++|+|++++
T Consensus 102 ------------------~~~~~~~~~d~~~~~~~~~~~~yg~~~~v 130 (427)
T COG1236 102 ------------------PDKPPYSEEDVERVPDLIRPLPYGEPVEV 130 (427)
T ss_pred ------------------CCCCCCchhHHHhhHhhEEEecCCCceEe
Confidence 25578999999999999999999999863
No 7
>KOG1135|consensus
Probab=99.87 E-value=4.3e-22 Score=187.63 Aligned_cols=126 Identities=21% Similarity=0.383 Sum_probs=102.5
Q ss_pred EEEecCC-CCCCeEEEEeCCeEEEEeCCCCCccccccCCCCccCCcccCCCCCCCcccchhhhhhhhhhhhcCcccccCC
Q psy9121 3 VYSLSSH-PNKACYILRFKEMTIMLDCGLCALPLMHFLPLPIIPTAKFNNLPSWIPRECTEAQLEGELKECCGKVFVDSA 81 (203)
Q Consensus 3 l~~LG~~-~~~sc~ll~~~~~~ILlDCGl~~~~~~~f~p~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vds~ 81 (203)
.++.|.. .+..||+|+++|.+||+|||++...-+. -.
T Consensus 5 ~~~~g~~de~~~cyllqiD~~~iLiDcGwd~~f~~~-------------~i----------------------------- 42 (764)
T KOG1135|consen 5 TTLCGATDEGPLCYLLQIDGVRILIDCGWDESFDMS-------------MI----------------------------- 42 (764)
T ss_pred EeeccccCCCcceEEEEEcCeEEEEeCCCcchhccc-------------hh-----------------------------
Confidence 3455655 8888999999999999999998651110 01
Q ss_pred CCCCCCCCCCCCCCCccEEEEcCCC--CccchHHHHhhcCCCCcEEecchhHHHHHhhHHHHHHHHhhccccccccchhh
Q psy9121 82 PEFQPPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQIGKFYLEELVQYIEKTPKLTSASHWKD 159 (203)
Q Consensus 82 ~~~~~p~~~~~d~~~IDaVlISH~H--h~g~LP~l~~~~~f~g~IYaT~pT~~l~~lll~d~~~~~~~~~~~~~~~~~~~ 159 (203)
++... -+++|||||+||+. |+|||||++...|++.+||||.|+..||++.|.|+..-+...
T Consensus 43 -----~~l~~-~i~~iDaILLShpd~~hlGaLpY~~~k~gl~~~VYAT~PV~~mG~m~myD~~~S~~~~----------- 105 (764)
T KOG1135|consen 43 -----KELKP-VIPTIDAILLSHPDILHLGALPYAVGKLGLNAPVYATLPVIKMGQMFMYDLYRSHGNV----------- 105 (764)
T ss_pred -----hhhhc-ccccccEEEecCCChHHhccchhhHhhCCccceEEEecchhhhhhhhHHHHHhccccc-----------
Confidence 11112 25799999999999 999999999999999999999999999999999998843321
Q ss_pred hccccCCCccCCCCCcCCCCCCHHHHHHHHhcceeecCCcEEe
Q psy9121 160 ISHLISPFSEDIKPRSWRQLYNLQSVYASLARVQMVGYDEKLY 202 (203)
Q Consensus 160 ~~~~l~~~~~~~~~~~~~~lYt~~Dv~~~l~~i~~v~Y~e~i~ 202 (203)
+...+||.+||+.||++|+.+.|+|++.
T Consensus 106 ---------------~df~l~sldDvd~aFd~I~~LKYsQ~v~ 133 (764)
T KOG1135|consen 106 ---------------GDFDLFSLDDVDAAFDKIIQLKYSQPVA 133 (764)
T ss_pred ---------------ccccccchhhhHHHHhheeeeeccceEE
Confidence 2456899999999999999999999974
No 8
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=99.41 E-value=1.1e-12 Score=120.23 Aligned_cols=95 Identities=20% Similarity=0.286 Sum_probs=68.5
Q ss_pred CEEEEecCC--CCCCeEEEEeCCeEEEEeCCCCCccccccCCCCccCCcccCCCCCCCcccchhhhhhhhhhhhcCcccc
Q psy9121 1 MKVYSLSSH--PNKACYILRFKEMTIMLDCGLCALPLMHFLPLPIIPTAKFNNLPSWIPRECTEAQLEGELKECCGKVFV 78 (203)
Q Consensus 1 Mkl~~LG~~--~~~sc~ll~~~~~~ILlDCGl~~~~~~~f~p~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v 78 (203)
+++++|||. +|++||+|+.++..||+|||...... .+.. +
T Consensus 1 ~~i~~lGG~~eiG~n~~ll~~~~~~iliD~G~~~~~~---------------~~~g-----------------------~ 42 (422)
T TIGR00649 1 VKIFALGGLGEIGKNMYVVEIDDDVFIFDAGILFPED---------------AMLG-----------------------V 42 (422)
T ss_pred CEEEEccCCCccCCeEEEEEECCeEEEEeCCCCCCcc---------------cccC-----------------------C
Confidence 589999987 99999999999999999999764210 0000 0
Q ss_pred cCCCCCCCCCCCCC--CCCCccEEEEcCCC--CccchHHHHhhcCCCCcEEecchhHHHHHhhH
Q psy9121 79 DSAPEFQPPLSQLV--DFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQIGKFYL 138 (203)
Q Consensus 79 ds~~~~~~p~~~~~--d~~~IDaVlISH~H--h~g~LP~l~~~~~f~g~IYaT~pT~~l~~lll 138 (203)
+ .-+|++..+ ...+||+|+|||+| |+||||++.+..+ ..+||+|+.|.++.+..+
T Consensus 43 ~----~~iPd~~~l~~~~~~i~~I~iTH~H~DHiggl~~l~~~~~-~~~Vy~~~~t~~~l~~~~ 101 (422)
T TIGR00649 43 D----GVIPDFSYLQENQDKVKGIFITHGHEDHIGAVPYLFHTVG-FPPIYGTPLTIALIKSKI 101 (422)
T ss_pred c----cccCCHHHHHhccccCCEEEECCCChHHhCcHHHHHHhCC-CCeEEeCHHHHHHHHHHH
Confidence 0 002333222 24689999999999 9999999987433 368999999988765443
No 9
>PRK00055 ribonuclease Z; Reviewed
Probab=99.36 E-value=9.6e-13 Score=111.89 Aligned_cols=84 Identities=17% Similarity=0.296 Sum_probs=62.8
Q ss_pred CEEEEecCCC-------CCCeEEEEeCCeEEEEeCCCCCccccccCCCCccCCcccCCCCCCCcccchhhhhhhhhhhhc
Q psy9121 1 MKVYSLSSHP-------NKACYILRFKEMTIMLDCGLCALPLMHFLPLPIIPTAKFNNLPSWIPRECTEAQLEGELKECC 73 (203)
Q Consensus 1 Mkl~~LG~~~-------~~sc~ll~~~~~~ILlDCGl~~~~~~~f~p~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~~ 73 (203)
|||++||++. +++|++|+.++.+||+|||..... .+.+
T Consensus 2 m~i~~LGsg~~~~~~~r~~~~~li~~~~~~iLiD~G~g~~~---------------------------------~l~~-- 46 (270)
T PRK00055 2 MELTFLGTGSGVPTPTRNVSSILLRLGGELFLFDCGEGTQR---------------------------------QLLK-- 46 (270)
T ss_pred eEEEEEecCCCCCcCCCCCCEEEEEECCcEEEEECCHHHHH---------------------------------HHHH--
Confidence 8999999872 499999999999999999954210 0111
Q ss_pred CcccccCCCCCCCCCCCCCCCCCccEEEEcCCC--CccchHHHHhhcCC-----CCcEEecchhHHHHH
Q psy9121 74 GKVFVDSAPEFQPPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGF-----EGVVYATEPTLQIGK 135 (203)
Q Consensus 74 ~~~~vds~~~~~~p~~~~~d~~~IDaVlISH~H--h~g~LP~l~~~~~f-----~g~IYaT~pT~~l~~ 135 (203)
..+++.+||+|+|||.| |++|||.+.....+ .-+||+.+.+.++.+
T Consensus 47 ----------------~~~~~~~i~~i~lTH~H~DHi~Gl~~l~~~~~~~~~~~~l~iy~p~~~~~~~~ 99 (270)
T PRK00055 47 ----------------TGIKPRKIDKIFITHLHGDHIFGLPGLLSTRSLSGRTEPLTIYGPKGIKEFVE 99 (270)
T ss_pred ----------------cCCCHHHCCEEEEeCCCchhhCcHHHHHHHhhhcCCCceEEEECCccHHHHHH
Confidence 13467899999999999 99999988753322 235999888776543
No 10
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=99.29 E-value=1e-11 Score=105.93 Aligned_cols=80 Identities=19% Similarity=0.248 Sum_probs=60.0
Q ss_pred CEEEEecCCCC-------------------------CCeEEEEeCCeEEEEeCCCCCccccccCCCCccCCcccCCCCCC
Q psy9121 1 MKVYSLSSHPN-------------------------KACYILRFKEMTIMLDCGLCALPLMHFLPLPIIPTAKFNNLPSW 55 (203)
Q Consensus 1 Mkl~~LG~~~~-------------------------~sc~ll~~~~~~ILlDCGl~~~~~~~f~p~~~~~s~~~~~~~~~ 55 (203)
||+|+||.+.+ ++|++|+.++.+||+|||+... .
T Consensus 1 m~~~~lGs~~~~~~p~~~c~c~~c~~~~~~p~~~r~~~s~li~~~~~~iLiD~G~~~~------------~--------- 59 (250)
T PRK11244 1 MRLTLLGTGGAQGVPVFGCECAACARARRDPAYRRRPCSALIEFNGARTLIDAGLPDL------------A--------- 59 (250)
T ss_pred CEEEEEeccCCCCccCCCccchhhhhhhcCCCCCcceeEEEEEECCCEEEEECCChHH------------h---------
Confidence 99999997633 5799999999999999994210 0
Q ss_pred CcccchhhhhhhhhhhhcCcccccCCCCCCCCCCCCCCCCCccEEEEcCCC--CccchHHHHhhcCCCCcEEecchhHHH
Q psy9121 56 IPRECTEAQLEGELKECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQI 133 (203)
Q Consensus 56 ~~~~~~~~~~~~~l~~~~~~~~vds~~~~~~p~~~~~d~~~IDaVlISH~H--h~g~LP~l~~~~~f~g~IYaT~pT~~l 133 (203)
..+++.+||+|||||.| |++||+.+....+..-+||++..+..+
T Consensus 60 ----------------------------------~~~~~~~i~~i~iTH~H~DHi~gl~~l~~~~~~~i~i~~~~~~~~~ 105 (250)
T PRK11244 60 ----------------------------------ERFPPGSLQQILLTHYHMDHVQGLFPLRWGVGDPIPVYGPPDPEGC 105 (250)
T ss_pred ----------------------------------hcCCcccCCEEEEccCchhhhccHHHHHhhcCCceeEEeCCchhhH
Confidence 11345799999999999 999998875422334579998887654
Q ss_pred HH
Q psy9121 134 GK 135 (203)
Q Consensus 134 ~~ 135 (203)
..
T Consensus 106 ~~ 107 (250)
T PRK11244 106 DD 107 (250)
T ss_pred HH
Confidence 43
No 11
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=99.23 E-value=1.2e-11 Score=107.60 Aligned_cols=82 Identities=16% Similarity=0.261 Sum_probs=61.7
Q ss_pred EEEEecCC-------CCCCeEEEEeCCeEEEEeCCCCCccccccCCCCccCCcccCCCCCCCcccchhhhhhhhhhhhcC
Q psy9121 2 KVYSLSSH-------PNKACYILRFKEMTIMLDCGLCALPLMHFLPLPIIPTAKFNNLPSWIPRECTEAQLEGELKECCG 74 (203)
Q Consensus 2 kl~~LG~~-------~~~sc~ll~~~~~~ILlDCGl~~~~~~~f~p~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 74 (203)
||++||++ .+.+|++|+.++.+||+|||..... ++.+
T Consensus 1 ~~~~lGtg~~~p~~~r~~~~~~v~~~~~~iLiD~G~g~~~---------------------------------~l~~--- 44 (299)
T TIGR02651 1 EITFLGTGGGVPTKERNLPSIALKLNGELWLFDCGEGTQR---------------------------------QMLR--- 44 (299)
T ss_pred CEEEEeCCCCCCCCCCCCceEEEEECCeEEEEECCHHHHH---------------------------------HHHH---
Confidence 68999976 5678999999999999999954220 1111
Q ss_pred cccccCCCCCCCCCCCCCCCCCccEEEEcCCC--CccchHHHHhhcCCC-----CcEEecchhHHHH
Q psy9121 75 KVFVDSAPEFQPPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFE-----GVVYATEPTLQIG 134 (203)
Q Consensus 75 ~~~vds~~~~~~p~~~~~d~~~IDaVlISH~H--h~g~LP~l~~~~~f~-----g~IYaT~pT~~l~ 134 (203)
..+++.+||+|||||+| |++|||.+.....+. -+||+...+.+..
T Consensus 45 ---------------~~~~~~~i~~IfiTH~H~DH~~Gl~~l~~~~~~~~~~~~i~Iy~p~~~~~~l 96 (299)
T TIGR02651 45 ---------------SGISPMKIDRIFITHLHGDHILGLPGLLSTMSFQGRKEPLTIYGPPGIKEFI 96 (299)
T ss_pred ---------------cCCCHHHCcEEEEECCchhhhcChHHHHHhhccCCCCceEEEECCccHHHHH
Confidence 12456789999999999 999999987643332 3599998887653
No 12
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.20 E-value=5.3e-11 Score=112.86 Aligned_cols=97 Identities=26% Similarity=0.333 Sum_probs=73.3
Q ss_pred CEEEEecCC--CCCCeEEEEeCCeEEEEeCCCCCccccccCCCCccCCcccCCCCCCCcccchhhhhhhhhhhhcCcccc
Q psy9121 1 MKVYSLSSH--PNKACYILRFKEMTIMLDCGLCALPLMHFLPLPIIPTAKFNNLPSWIPRECTEAQLEGELKECCGKVFV 78 (203)
Q Consensus 1 Mkl~~LG~~--~~~sc~ll~~~~~~ILlDCGl~~~~~~~f~p~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v 78 (203)
|+++.|||- .|.+|+++++++.-+++|||+.+..- .++ -|
T Consensus 9 i~i~~lGG~~EiGkN~~vve~~~~i~i~D~G~~fp~~---------------~~~-----------------------gv 50 (555)
T COG0595 9 IKIFALGGVGEIGKNMYVVEYGDDIIILDAGLKFPED---------------DLL-----------------------GV 50 (555)
T ss_pred eEEEEecChhhhccceEEEEECCcEEEEECccccCcc---------------ccc-----------------------cc
Confidence 578999996 99999999999999999999865310 111 01
Q ss_pred cCCCCCCCCCCCCC--CCCCccEEEEcCCC--CccchHHHHhhcCCCCcEEecchhHHHHHhhHHH
Q psy9121 79 DSAPEFQPPLSQLV--DFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQIGKFYLEE 140 (203)
Q Consensus 79 ds~~~~~~p~~~~~--d~~~IDaVlISH~H--h~g~LP~l~~~~~f~g~IYaT~pT~~l~~lll~d 140 (203)
|-. +|.+..+ +...|++|+|||+| |+||||||.....+ .|||+|+.|..+.+.=+++
T Consensus 51 Dli----IPd~~yl~~n~~kvkgI~lTHgHeDHIGaip~ll~~~~~-~piy~s~lt~~Li~~k~~~ 111 (555)
T COG0595 51 DLI----IPDFSYLEENKDKVKGIFLTHGHEDHIGALPYLLKQVLF-APIYASPLTAALIKEKLKE 111 (555)
T ss_pred cEE----ecChHHhhhccccceEEEecCCchhhccchHHHHhcCCc-CceecCHhhHHHHHHHHHH
Confidence 111 3444221 34589999999999 99999999975443 8999999999997777663
No 13
>PRK02113 putative hydrolase; Provisional
Probab=99.15 E-value=9.6e-11 Score=99.73 Aligned_cols=41 Identities=17% Similarity=0.103 Sum_probs=31.6
Q ss_pred CCCCccEEEEcCCC--CccchHHHHhhc-CCCCcEEecchhHHH
Q psy9121 93 DFSEVNMILISNYL--SMLALPFITEGT-GFEGVVYATEPTLQI 133 (203)
Q Consensus 93 d~~~IDaVlISH~H--h~g~LP~l~~~~-~f~g~IYaT~pT~~l 133 (203)
++.+||+|||||.| |++|||.+.... ...-+||+++.+.+.
T Consensus 63 ~~~~id~I~lTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~ 106 (252)
T PRK02113 63 PFGKIDAVLITHEHYDHVGGLDDLRPFCRFGEVPIYAEQYVAER 106 (252)
T ss_pred CccccCEEEECCCChhhhCCHHHHHHhccCCCceEEECHHHHHH
Confidence 45789999999999 999999885321 234579999877655
No 14
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=99.12 E-value=7.5e-11 Score=103.45 Aligned_cols=82 Identities=16% Similarity=0.263 Sum_probs=59.5
Q ss_pred EEEecCC-------CCCCeEEEEeC----CeEEEEeCCCCCccccccCCCCccCCcccCCCCCCCcccchhhhhhhhhhh
Q psy9121 3 VYSLSSH-------PNKACYILRFK----EMTIMLDCGLCALPLMHFLPLPIIPTAKFNNLPSWIPRECTEAQLEGELKE 71 (203)
Q Consensus 3 l~~LG~~-------~~~sc~ll~~~----~~~ILlDCGl~~~~~~~f~p~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~ 71 (203)
|++||++ .+.||++|++. +.+||+|||..... ++.+
T Consensus 1 ~~~LGt~~~~p~~~r~~s~~lv~~~~~~~~~~iLiD~G~g~~~---------------------------------~l~~ 47 (303)
T TIGR02649 1 LIFLGTSAGVPTRTRNVTAILLNLQHPTQSGLWLFDCGEGTQH---------------------------------QLLH 47 (303)
T ss_pred CEEEecCCCCCCCCCCccEEEEEccCCCCCCEEEEECCccHHH---------------------------------HHHH
Confidence 5789876 66889999985 47899999965321 1121
Q ss_pred hcCcccccCCCCCCCCCCCCCCCCCccEEEEcCCC--CccchHHHHhhcCC-----CCcEEecchhHHHHH
Q psy9121 72 CCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGF-----EGVVYATEPTLQIGK 135 (203)
Q Consensus 72 ~~~~~~vds~~~~~~p~~~~~d~~~IDaVlISH~H--h~g~LP~l~~~~~f-----~g~IYaT~pT~~l~~ 135 (203)
..+++.+||+|+|||.| |++|||.+.....+ .-+||+.+.+.+.-+
T Consensus 48 ------------------~~i~~~~id~IfiTH~H~DHi~Gl~~ll~~~~~~~~~~~l~Iygp~~~~~~l~ 100 (303)
T TIGR02649 48 ------------------TAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVE 100 (303)
T ss_pred ------------------hCCCHHHCcEEEEeCCChhhcCCHHHHHHHHHhcCCCCCeEEEechhHHHHHH
Confidence 23567899999999999 99999987643222 236999998877543
No 15
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=99.11 E-value=1.1e-10 Score=103.05 Aligned_cols=42 Identities=19% Similarity=0.125 Sum_probs=34.5
Q ss_pred CCCCCCccEEEEcCCC--CccchHHHHhhcCCCCcEEecchhHHHH
Q psy9121 91 LVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQIG 134 (203)
Q Consensus 91 ~~d~~~IDaVlISH~H--h~g~LP~l~~~~~f~g~IYaT~pT~~l~ 134 (203)
.+++.+||+|||||+| |++|||++.+ +..-+||+++.|.+.-
T Consensus 75 g~~~~~ldav~lTH~H~DHi~Gl~~l~~--~~~l~Vyg~~~~~~~l 118 (302)
T PRK05184 75 GLRDTPIAAVVLTDGQIDHTTGLLTLRE--GQPFPVYATPAVLEDL 118 (302)
T ss_pred cCCcccccEEEEeCCchhhhhChHhhcc--CCCeEEEeCHHHHHHH
Confidence 3466799999999999 9999999954 4456899999987653
No 16
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=98.95 E-value=6.9e-10 Score=97.76 Aligned_cols=82 Identities=20% Similarity=0.354 Sum_probs=60.7
Q ss_pred CEEEEecCC-------CCCCeEEEEeCCeEEEEeCCCCCccccccCCCCccCCcccCCCCCCCcccchhhhhhhhhhhhc
Q psy9121 1 MKVYSLSSH-------PNKACYILRFKEMTIMLDCGLCALPLMHFLPLPIIPTAKFNNLPSWIPRECTEAQLEGELKECC 73 (203)
Q Consensus 1 Mkl~~LG~~-------~~~sc~ll~~~~~~ILlDCGl~~~~~~~f~p~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~~ 73 (203)
|++++||.+ ...|.++|+..+.++|+|||...+. ++..
T Consensus 2 m~i~fLGtg~~~Pt~~r~~~s~ll~~~~~~~L~DcGeGt~~---------------------------------~l~~-- 46 (292)
T COG1234 2 MEITFLGTGGAVPTKDRNVSSILLRLEGEKFLFDCGEGTQH---------------------------------QLLR-- 46 (292)
T ss_pred cEEEEEecCCCCCcCccccceeEEEeCCeeEEEECCHhHHH---------------------------------HHHH--
Confidence 899999976 5678999999999999999954321 1111
Q ss_pred CcccccCCCCCCCCCCCCCCCCCccEEEEcCCC--CccchHHHHhhcCCCC-----cEEecchhHHH
Q psy9121 74 GKVFVDSAPEFQPPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEG-----VVYATEPTLQI 133 (203)
Q Consensus 74 ~~~~vds~~~~~~p~~~~~d~~~IDaVlISH~H--h~g~LP~l~~~~~f~g-----~IYaT~pT~~l 133 (203)
..+.+.+||+|+|||.| |+.|||-+.....|.| .||.-...+.+
T Consensus 47 ----------------~~~~~~~i~~IfITH~H~DHi~gL~~ll~~~~~~~~~~~l~iygP~g~~~~ 97 (292)
T COG1234 47 ----------------AGLPPRKIDAIFITHLHGDHIAGLPGLLVSRSFRGRREPLKIYGPPGIKEF 97 (292)
T ss_pred ----------------hcCChhhccEEEeeccccchhcCcHHHHHHhhccCCCCceeEECCcchhhh
Confidence 23456799999999999 9999998776555543 46665555533
No 17
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=98.93 E-value=3.2e-09 Score=91.74 Aligned_cols=84 Identities=20% Similarity=0.277 Sum_probs=62.6
Q ss_pred CEEEEecCC----------CCCCeEEEEeCCeEEEEeCCCCCccccccCCCCccCCcccCCCCCCCcccchhhhhhhhhh
Q psy9121 1 MKVYSLSSH----------PNKACYILRFKEMTIMLDCGLCALPLMHFLPLPIIPTAKFNNLPSWIPRECTEAQLEGELK 70 (203)
Q Consensus 1 Mkl~~LG~~----------~~~sc~ll~~~~~~ILlDCGl~~~~~~~f~p~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~ 70 (203)
|++|+|=-. ..+-+.|||.++.+||+|.|.+...++. +++
T Consensus 1 mkitvl~dn~~~~~~~f~a~hGfS~LVE~~~~riLFDtG~~~~~ll~------------------------------Na~ 50 (259)
T COG1237 1 MKITVLVDNRAGARPGFRAEHGFSALVEDEGTRILFDTGTDSDVLLH------------------------------NAR 50 (259)
T ss_pred CeEEEEEcCCCccCCcccccCceEEEEEcCCeEEEEeCCCCcHHHHH------------------------------HHH
Confidence 677776321 4567889999999999999966442221 112
Q ss_pred hhcCcccccCCCCCCCCCCCCCCCCCccEEEEcCCC--CccchHHHHhhcCCCCcEEecchhHH
Q psy9121 71 ECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQ 132 (203)
Q Consensus 71 ~~~~~~~vds~~~~~~p~~~~~d~~~IDaVlISH~H--h~g~LP~l~~~~~f~g~IYaT~pT~~ 132 (203)
. ..+|+.+||+|+|||.| |.||||++.+...-..+|||.+-...
T Consensus 51 ~------------------lgvd~~did~vvlSHgH~DH~GGL~~~~~~~~~~i~v~ahp~af~ 96 (259)
T COG1237 51 L------------------LGVDLRDIDAVVLSHGHYDHTGGLPYLLEENNPGIPVYAHPDAFK 96 (259)
T ss_pred H------------------cCCCcccCcEEEEeCCCccccCchHhHHhccCCCceEEeChHHHh
Confidence 2 35789999999999999 99999999885545568999776644
No 18
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=98.89 E-value=4.3e-09 Score=89.04 Aligned_cols=69 Identities=19% Similarity=0.264 Sum_probs=52.3
Q ss_pred CCCCeEEEEeCCeEEEEeCCCCCccccccCCCCccCCcccCCCCCCCcccchhhhhhhhhhhhcCcccccCCCCCCCCCC
Q psy9121 10 PNKACYILRFKEMTIMLDCGLCALPLMHFLPLPIIPTAKFNNLPSWIPRECTEAQLEGELKECCGKVFVDSAPEFQPPLS 89 (203)
Q Consensus 10 ~~~sc~ll~~~~~~ILlDCGl~~~~~~~f~p~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vds~~~~~~p~~ 89 (203)
..++|++|+.++..||||||+... .
T Consensus 25 r~~~s~~i~~~~~~iliD~G~~~~-------------------~------------------------------------ 49 (238)
T TIGR03307 25 RQPCSAVIEFNGARTLIDAGLTDL-------------------A------------------------------------ 49 (238)
T ss_pred CcceEEEEEECCcEEEEECCChhH-------------------h------------------------------------
Confidence 678899999999999999995310 0
Q ss_pred CCCCCCCccEEEEcCCC--CccchHHHHhhcCCCCcEEecchhHHH
Q psy9121 90 QLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQI 133 (203)
Q Consensus 90 ~~~d~~~IDaVlISH~H--h~g~LP~l~~~~~f~g~IYaT~pT~~l 133 (203)
..+++..||+|||||.| |++||+.+....+..-+||+++.|..+
T Consensus 50 ~~~~~~~id~i~iTH~H~DHi~gl~~l~~~~~~~~~v~~~~~~~~~ 95 (238)
T TIGR03307 50 ERFPPGSLQAILLTHYHMDHVQGLFPLRWGVGEPIPVYGPPDEEGC 95 (238)
T ss_pred hccCccCCCEEEEecCchhhhcchHHHHHhcCCceeEEeCchHhhH
Confidence 11345689999999999 999998775433334679999887654
No 19
>PRK00685 metal-dependent hydrolase; Provisional
Probab=98.88 E-value=9.7e-09 Score=85.70 Aligned_cols=75 Identities=16% Similarity=0.116 Sum_probs=55.3
Q ss_pred CEEEEecCCCCCCeEEEEeCCeEEEEeCCCCCccccccCCCCccCCcccCCCCCCCcccchhhhhhhhhhhhcCcccccC
Q psy9121 1 MKVYSLSSHPNKACYILRFKEMTIMLDCGLCALPLMHFLPLPIIPTAKFNNLPSWIPRECTEAQLEGELKECCGKVFVDS 80 (203)
Q Consensus 1 Mkl~~LG~~~~~sc~ll~~~~~~ILlDCGl~~~~~~~f~p~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vds 80 (203)
|+++.||. +|++|+.++.+||+||++.-. |.+
T Consensus 1 m~i~~lG~----s~~li~~~~~~iLiDP~~~~~-------------------~~~------------------------- 32 (228)
T PRK00685 1 MKITWLGH----SAFLIETGGKKILIDPFITGN-------------------PLA------------------------- 32 (228)
T ss_pred CEEEEEcc----eEEEEEECCEEEEECCCCCCC-------------------CCC-------------------------
Confidence 89999997 899999999999999985311 000
Q ss_pred CCCCCCCCCCCCCCCCccEEEEcCCC--CccchHHHHhhcCCCCcEEecchhHHH
Q psy9121 81 APEFQPPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQI 133 (203)
Q Consensus 81 ~~~~~~p~~~~~d~~~IDaVlISH~H--h~g~LP~l~~~~~f~g~IYaT~pT~~l 133 (203)
+ ...+..+||+|||||.| |+++++.+.. ....+||++..+.+.
T Consensus 33 ------~--~~~~~~~id~vliTH~H~DH~~~~~~~~~--~~~~~v~~~~~~~~~ 77 (228)
T PRK00685 33 ------D--LKPEDVKVDYILLTHGHGDHLGDTVEIAK--RTGATVIANAELANY 77 (228)
T ss_pred ------C--CChhcCcccEEEeCCCCccccccHHHHHH--hCCCEEEEeHHHHHH
Confidence 0 00112289999999999 9999887764 335789998765544
No 20
>PRK04286 hypothetical protein; Provisional
Probab=98.82 E-value=4.5e-09 Score=92.65 Aligned_cols=97 Identities=21% Similarity=0.210 Sum_probs=59.2
Q ss_pred CEEEEecCCCCC---CeEEEEeCCeEEEEeCCCCCccccccCCCCccCCcccCCCCCCCcccchhhhhhhhhhhhcCccc
Q psy9121 1 MKVYSLSSHPNK---ACYILRFKEMTIMLDCGLCALPLMHFLPLPIIPTAKFNNLPSWIPRECTEAQLEGELKECCGKVF 77 (203)
Q Consensus 1 Mkl~~LG~~~~~---sc~ll~~~~~~ILlDCGl~~~~~~~f~p~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 77 (203)
|++.+||++..+ +|++|+.++.+||+|+|.....+.. .+|... +....+.+.+.+.
T Consensus 1 m~~~~l~s~s~g~~~~~~~I~~~~~~iLID~G~~~~~~~~-------------~~~~~~---~~~~~~~~~~~~i----- 59 (298)
T PRK04286 1 MKIIPLASESLGVRSMATFVETKDVRILIDPGVSLAPRRY-------------GLPPHP---IELERLEEVREKI----- 59 (298)
T ss_pred CEEEEEEeCCCCceeeEEEEEECCeEEEEcCCCCcCcccc-------------CCCCcc---hhHHHHHHHHHHh-----
Confidence 899999998666 9999999999999999965432211 111100 0001111122222
Q ss_pred ccCCCCCCCCCCCCCCCCCccEEEEcCCC--CccchHHHHhhc---CCCCcEEecchhH
Q psy9121 78 VDSAPEFQPPLSQLVDFSEVNMILISNYL--SMLALPFITEGT---GFEGVVYATEPTL 131 (203)
Q Consensus 78 vds~~~~~~p~~~~~d~~~IDaVlISH~H--h~g~LP~l~~~~---~f~g~IYaT~pT~ 131 (203)
...+..||+|||||+| |++++..+.-.. .+.-+||++.+|.
T Consensus 60 -------------~~~~~~id~IliTH~H~DHi~g~~~~~y~~~~~~~~i~iy~~~~~~ 105 (298)
T PRK04286 60 -------------LEYAKKADVITISHYHYDHHTPFYEDPYELSDEEIPKEIYKGKIVL 105 (298)
T ss_pred -------------hcccccCCEEEecCCccccCCCccccccccccccchHHHhcCceec
Confidence 2245689999999999 997765431001 1224678776665
No 21
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=98.80 E-value=1.4e-08 Score=80.18 Aligned_cols=75 Identities=24% Similarity=0.304 Sum_probs=55.8
Q ss_pred CCCCeEEEEeCCeEEEEeCCCCCccccccCCCCccCCcccCCCCCCCcccchhhhhhhhhhhhcCcccccCCCCCCCCCC
Q psy9121 10 PNKACYILRFKEMTIMLDCGLCALPLMHFLPLPIIPTAKFNNLPSWIPRECTEAQLEGELKECCGKVFVDSAPEFQPPLS 89 (203)
Q Consensus 10 ~~~sc~ll~~~~~~ILlDCGl~~~~~~~f~p~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vds~~~~~~p~~ 89 (203)
.+++|++|+.++..||+|||..... .+...+++
T Consensus 4 ~~~~~~li~~~~~~iliD~g~~~~~-----------------------------~~~~~l~~------------------ 36 (183)
T smart00849 4 VGVNSYLVEGDGGAILIDTGPGEAE-----------------------------DLLAELKK------------------ 36 (183)
T ss_pred cceeEEEEEeCCceEEEeCCCChhH-----------------------------HHHHHHHH------------------
Confidence 5689999999999999999943210 00001111
Q ss_pred CCCCCCCccEEEEcCCC--CccchHHHHhhcCCCCcEEecchhHHHHH
Q psy9121 90 QLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQIGK 135 (203)
Q Consensus 90 ~~~d~~~IDaVlISH~H--h~g~LP~l~~~~~f~g~IYaT~pT~~l~~ 135 (203)
+.+..||+|+|||.| |++|+|.+.+. .+.+||+++.+.+..+
T Consensus 37 --~~~~~i~~i~iTH~H~DH~~g~~~~~~~--~~~~i~~~~~~~~~~~ 80 (183)
T smart00849 37 --LGPKDIDAIILTHGHPDHIGGLPELLEA--PGAPVYAPEGTAELLK 80 (183)
T ss_pred --cCchhhcEEEecccCcchhccHHHHHhC--CCCcEEEchhhhHHHh
Confidence 125799999999999 99999999874 5678999888876544
No 22
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=98.78 E-value=7.1e-09 Score=91.81 Aligned_cols=42 Identities=21% Similarity=0.149 Sum_probs=36.2
Q ss_pred CCCCCCccEEEEcCCC--CccchHHHHhhcCCCCcEEecchhHHHH
Q psy9121 91 LVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQIG 134 (203)
Q Consensus 91 ~~d~~~IDaVlISH~H--h~g~LP~l~~~~~f~g~IYaT~pT~~l~ 134 (203)
.+++.+||+|||||.| |+.||+.|.+ +..-+||+++.|.+.-
T Consensus 74 gl~~~~IdaI~lTH~H~DHi~GL~~L~~--~~~lpVya~~~t~~~L 117 (302)
T TIGR02108 74 GLRHTPIAGVVLTDGEIDHTTGLLTLRE--GQPFTLYATEMVLQDL 117 (302)
T ss_pred CCCcccCCEEEEeCCCcchhhCHHHHcC--CCCceEEECHHHHHHH
Confidence 5778899999999999 9999999964 4566899999988764
No 23
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=98.62 E-value=1.4e-08 Score=79.52 Aligned_cols=83 Identities=13% Similarity=0.163 Sum_probs=55.8
Q ss_pred CCCCeEEEEeCCeEEEEeCCCCCccccccCCCCccCCcccCCCCCCCcccchhhhhhhhhh-hhcCcccccCCCCCCCCC
Q psy9121 10 PNKACYILRFKEMTIMLDCGLCALPLMHFLPLPIIPTAKFNNLPSWIPRECTEAQLEGELK-ECCGKVFVDSAPEFQPPL 88 (203)
Q Consensus 10 ~~~sc~ll~~~~~~ILlDCGl~~~~~~~f~p~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~vds~~~~~~p~ 88 (203)
.+.+||+|+.++..||+|||...... .... ..
T Consensus 4 ~~~n~~li~~~~~~iliD~G~~~~~~-------------------------------~~~~~~~---------------- 36 (194)
T PF00753_consen 4 GGSNSYLIEGGDGAILIDTGLDPDFA-------------------------------KELELAL---------------- 36 (194)
T ss_dssp EEEEEEEEEETTEEEEESEBSSHHHH-------------------------------HHHHHHH----------------
T ss_pred eeEEEEEEEECCEEEEEeCCCCchhh-------------------------------HHhhhhH----------------
Confidence 45689999999999999999763210 0000 00
Q ss_pred CCCCCCCCccEEEEcCCC--CccchHHHHhhcCCCCcEEecchhHHHHHhhHHHH
Q psy9121 89 SQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQIGKFYLEEL 141 (203)
Q Consensus 89 ~~~~d~~~IDaVlISH~H--h~g~LP~l~~~~~f~g~IYaT~pT~~l~~lll~d~ 141 (203)
..++..+|++||+||+| |+||++.+.+..+ ...+++...............
T Consensus 37 -~~~~~~~i~~vi~TH~H~DH~ggl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 89 (194)
T PF00753_consen 37 -LGISGEDIDAVILTHAHPDHIGGLPELLEAGP-VVIIYSSADAAKAIRPPDRDS 89 (194)
T ss_dssp -HHHTGGGEEEEEESSSSHHHHTTHHHHHHHTT-EEEEEEHHHHHHHHHHHHHHH
T ss_pred -hhccCCCeEEEEECcccccccccccccccccc-eeeeecccccccccccccccc
Confidence 23567899999999999 9999999998544 344444444444444444433
No 24
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=98.48 E-value=8.9e-08 Score=82.93 Aligned_cols=91 Identities=16% Similarity=0.314 Sum_probs=60.7
Q ss_pred CEEEEecCCCCCCeEEEEeCC-----eEEEEeCCCCCccccccCCCCccCCcccCCCCCCCcccchhhhhhhhhhhhcCc
Q psy9121 1 MKVYSLSSHPNKACYILRFKE-----MTIMLDCGLCALPLMHFLPLPIIPTAKFNNLPSWIPRECTEAQLEGELKECCGK 75 (203)
Q Consensus 1 Mkl~~LG~~~~~sc~ll~~~~-----~~ILlDCGl~~~~~~~f~p~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 75 (203)
|++++||++..+++-.+..+- .++.+|||+... .+.
T Consensus 4 ~~f~~lgsG~~gg~p~~~~~~~~c~~~~~~v~~~~~~~-~~l-------------------------------------- 44 (269)
T COG1235 4 MRFTVLGSGSSGGVPVIGCDCRACGGNRLRVDCGVGVK-TLL-------------------------------------- 44 (269)
T ss_pred eEEEEEEEcCCCCceecCCCccccCCceEEEEEEecce-eEE--------------------------------------
Confidence 789999998777777776655 778888887532 000
Q ss_pred ccccCCCCCCCCCCCCCCCCCccEEEEcCCC--CccchHHHHhhcCCCCcEEecchhHHHHH
Q psy9121 76 VFVDSAPEFQPPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQIGK 135 (203)
Q Consensus 76 ~~vds~~~~~~p~~~~~d~~~IDaVlISH~H--h~g~LP~l~~~~~f~g~IYaT~pT~~l~~ 135 (203)
+|+-|.+. .......+..|||||+||.| |+.|+|.|.+ ++..++|+++.|.....
T Consensus 45 --id~g~~~~-~~~~~~~~~~idai~~TH~H~DHi~Gl~~l~~--~~~~~~~~~~~~~~~~~ 101 (269)
T COG1235 45 --IDAGPDLR-DQGLRLGVSDLDAILLTHEHSDHIQGLDDLRR--AYTLPIYVNPGTLRAST 101 (269)
T ss_pred --EecChhHH-hhhhcccccccCeEEEecccHHhhcChHHHHH--HhcCCcccccceecccc
Confidence 11100000 00011224699999999999 9999999987 45678888887777644
No 25
>PRK02126 ribonuclease Z; Provisional
Probab=98.40 E-value=1e-06 Score=79.18 Aligned_cols=46 Identities=9% Similarity=0.113 Sum_probs=36.0
Q ss_pred CCCCccEEEEcCCC--CccchHHHHhhc-CC--CCcEEecchhHHHHHhhH
Q psy9121 93 DFSEVNMILISNYL--SMLALPFITEGT-GF--EGVVYATEPTLQIGKFYL 138 (203)
Q Consensus 93 d~~~IDaVlISH~H--h~g~LP~l~~~~-~f--~g~IYaT~pT~~l~~lll 138 (203)
++..||+|||||.| |++|+|.|.+.. +- .-+||+.+.|.++-+-.+
T Consensus 44 ~~~~i~~I~iTH~H~DHi~Gl~~l~~~~~~r~~~l~iygp~~~~~~l~~~~ 94 (334)
T PRK02126 44 ELLRISHIFVSHTHMDHFIGFDRLLRHCLGRPRRLRLFGPPGFADQVEHKL 94 (334)
T ss_pred CCCccCEEEEcCCChhHhCcHHHHHHHhccCCCCeEEEECHHHHHHHHHHh
Confidence 45789999999999 999999998643 10 127999999998765544
No 26
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=98.30 E-value=1.5e-06 Score=79.26 Aligned_cols=41 Identities=17% Similarity=0.268 Sum_probs=34.6
Q ss_pred CCCCCccEEEEcCCC--CccchHHHHhhcCCCCcEEecchhHHH
Q psy9121 92 VDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQI 133 (203)
Q Consensus 92 ~d~~~IDaVlISH~H--h~g~LP~l~~~~~f~g~IYaT~pT~~l 133 (203)
+++.+||+|++||.| |+|+++.+.+..+ ..+||+++.+.+.
T Consensus 65 ~~~~~Id~IilTH~H~DHiggl~~l~~~~p-~a~V~~~~~~~~~ 107 (394)
T PRK11921 65 IDLDKIDYIVANHGEIDHSGALPELMKEIP-DTPIYCTKNGAKS 107 (394)
T ss_pred cCcccCCEEEeCCCCCchhhHHHHHHHHCC-CCEEEECHHHHHH
Confidence 456789999999999 9999999987543 5789999988765
No 27
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=98.23 E-value=5.9e-07 Score=72.29 Aligned_cols=41 Identities=12% Similarity=0.250 Sum_probs=31.8
Q ss_pred CCccEEEEcCCC--CccchHHHHhhcCC-CCcEEecchhHHHHH
Q psy9121 95 SEVNMILISNYL--SMLALPFITEGTGF-EGVVYATEPTLQIGK 135 (203)
Q Consensus 95 ~~IDaVlISH~H--h~g~LP~l~~~~~f-~g~IYaT~pT~~l~~ 135 (203)
..||+|+|||.| |++|||.+...... .++||+++.+.+..+
T Consensus 28 ~~id~v~iTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~l~ 71 (194)
T PF12706_consen 28 PDIDAVFITHSHPDHIAGLPSLIPAWAKHPKPIYGPPETKEFLR 71 (194)
T ss_dssp GCEEEEE-SBSSHHHHTTHHHHHHHHHHCTTEEEECHHHHHHHH
T ss_pred CCCCEEEECCCCccccCChHHHHHHhhcccceEEecHHHHHHHH
Confidence 499999999999 99998888764322 237999998888755
No 28
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=98.13 E-value=5.8e-06 Score=77.58 Aligned_cols=41 Identities=17% Similarity=0.304 Sum_probs=34.7
Q ss_pred CCCCCccEEEEcCCC--CccchHHHHhhcCCCCcEEecchhHHH
Q psy9121 92 VDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQI 133 (203)
Q Consensus 92 ~d~~~IDaVlISH~H--h~g~LP~l~~~~~f~g~IYaT~pT~~l 133 (203)
+++.+||+|++||.| |+|++|.|.+... ..+||+|+.+.++
T Consensus 67 ~~~~~Id~IilTH~H~DH~Ggl~~Ll~~~p-~a~V~~s~~~~~~ 109 (479)
T PRK05452 67 IDLADIDYIVINHAEEDHAGALTELMAQIP-DTPIYCTANAIDS 109 (479)
T ss_pred CCHhhCCEEEeCCCCcchhchHHHHHHHCC-CCEEEECHHHHHH
Confidence 456799999999999 9999999997532 5789999998765
No 29
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=97.86 E-value=7.3e-05 Score=72.67 Aligned_cols=71 Identities=10% Similarity=-0.003 Sum_probs=48.1
Q ss_pred CCeEEEEeCCeEEEEeCCCCCccccccCCCCccCCcccCCCCCCCcccchhhhhhhhhhhhcCcccccCCCCCCCCCCCC
Q psy9121 12 KACYILRFKEMTIMLDCGLCALPLMHFLPLPIIPTAKFNNLPSWIPRECTEAQLEGELKECCGKVFVDSAPEFQPPLSQL 91 (203)
Q Consensus 12 ~sc~ll~~~~~~ILlDCGl~~~~~~~f~p~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vds~~~~~~p~~~~ 91 (203)
+.|++|+.++..+|+|||-..+. ++.++..+...|+.
T Consensus 450 Gdaili~~~~~~iLIDtG~~~~~-----------------------~~~~~~~l~p~L~~-------------------- 486 (662)
T TIGR00361 450 GLAMFIGANGKGILYDTGEPWRE-----------------------GSLGEKVIIPFLTA-------------------- 486 (662)
T ss_pred ceEEEEEECCeEEEEeCCCCCCC-----------------------CCccHHHHHHHHHH--------------------
Confidence 57999999999999999943210 00122222223333
Q ss_pred CCCCCccEEEEcCCC--CccchHHHHhhcCCCCcEEec
Q psy9121 92 VDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYAT 127 (203)
Q Consensus 92 ~d~~~IDaVlISH~H--h~g~LP~l~~~~~f~g~IYaT 127 (203)
.... ||+|+|||.| |+||++.+.+... -.+||..
T Consensus 487 ~Gi~-ID~lilTH~d~DHiGGl~~ll~~~~-v~~i~~~ 522 (662)
T TIGR00361 487 KGIK-LEALILSHADQDHIGGAEIILKHHP-VKRLVIP 522 (662)
T ss_pred cCCC-cCEEEECCCchhhhCcHHHHHHhCC-ccEEEec
Confidence 2345 9999999999 9999999998543 2567764
No 30
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=97.75 E-value=7.4e-05 Score=59.51 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=21.0
Q ss_pred EEEEecCCCCCCeEEEEeCCeEEEEeCCC
Q psy9121 2 KVYSLSSHPNKACYILRFKEMTIMLDCGL 30 (203)
Q Consensus 2 kl~~LG~~~~~sc~ll~~~~~~ILlDCGl 30 (203)
||+.||. +|++++.+|.+||+|...
T Consensus 1 ~It~lgh----a~~~ie~~g~~iliDP~~ 25 (163)
T PF13483_consen 1 KITWLGH----ASFLIETGGKRILIDPWF 25 (163)
T ss_dssp EEEEEET----TEEEEEETTEEEEES--T
T ss_pred CEEEEEe----eEEEEEECCEEEEECCCC
Confidence 6888888 999999999999999993
No 31
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=97.74 E-value=0.00012 Score=66.33 Aligned_cols=41 Identities=5% Similarity=0.092 Sum_probs=27.0
Q ss_pred CCCCccEEEEcCCC--Cc--cchHHHHhhcCCCCcEEecchhHHH
Q psy9121 93 DFSEVNMILISNYL--SM--LALPFITEGTGFEGVVYATEPTLQI 133 (203)
Q Consensus 93 d~~~IDaVlISH~H--h~--g~LP~l~~~~~f~g~IYaT~pT~~l 133 (203)
++..||+|||||.| |+ ..+..+.+..+-..++++...+.++
T Consensus 106 ~i~~IDaVLiTH~H~DHlD~~tl~~l~~~~~~~~~~v~p~~~~~~ 150 (355)
T PRK11709 106 AIREIDAVLATHDHSDHIDVNVAAAVLQNCADHVKFIGPQACVDL 150 (355)
T ss_pred HCCCCCEEEECCCcccccChHHHHHHHhhcCCCcEEEEcHHHHHH
Confidence 45789999999999 87 3445554433334567776665543
No 32
>PRK11539 ComEC family competence protein; Provisional
Probab=97.69 E-value=0.00019 Score=70.83 Aligned_cols=81 Identities=11% Similarity=0.025 Sum_probs=52.1
Q ss_pred EEEEecCCCCCCeEEEEeCCeEEEEeCCCCCccccccCCCCccCCcccCCCCCCCcccchhhhhhhhhhhhcCcccccCC
Q psy9121 2 KVYSLSSHPNKACYILRFKEMTIMLDCGLCALPLMHFLPLPIIPTAKFNNLPSWIPRECTEAQLEGELKECCGKVFVDSA 81 (203)
Q Consensus 2 kl~~LG~~~~~sc~ll~~~~~~ILlDCGl~~~~~~~f~p~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vds~ 81 (203)
++++|--+ .|.|.+++.++.++|+|+|-..+. .+.++..+...|+.
T Consensus 502 ~v~~lDVG-qG~a~li~~~~~~lLiDtG~~~~~-----------------------~~~~~~~i~P~L~~---------- 547 (755)
T PRK11539 502 RVDMLDVG-HGLAVVIERNGKAILYDTGNAWPT-----------------------GDSAQQVIIPWLRW---------- 547 (755)
T ss_pred EEEEEEcc-CceEEEEEECCEEEEEeCCCCCCC-----------------------CcchHHHHHHHHHH----------
Confidence 34444332 357889999999999999943210 00011111122332
Q ss_pred CCCCCCCCCCCCCCCccEEEEcCCC--CccchHHHHhhcCCCCcEEecc
Q psy9121 82 PEFQPPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATE 128 (203)
Q Consensus 82 ~~~~~p~~~~~d~~~IDaVlISH~H--h~g~LP~l~~~~~f~g~IYaT~ 128 (203)
-.. +||.|+|||.| |+||++.+.+... ..+||+..
T Consensus 548 ----------~Gi-~lD~lilSH~d~DH~GGl~~Ll~~~~-~~~i~~~~ 584 (755)
T PRK11539 548 ----------HGL-TPEGIILSHEHLDHRGGLASLLHAWP-MAWIRSPL 584 (755)
T ss_pred ----------cCC-CcCEEEeCCCCcccCCCHHHHHHhCC-cceeeccC
Confidence 234 49999999999 9999999998543 46788753
No 33
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=97.66 E-value=0.00015 Score=62.24 Aligned_cols=33 Identities=15% Similarity=0.187 Sum_probs=28.2
Q ss_pred CccEEEEcCCC--CccchHHHHhhcCCCCcEEecchh
Q psy9121 96 EVNMILISNYL--SMLALPFITEGTGFEGVVYATEPT 130 (203)
Q Consensus 96 ~IDaVlISH~H--h~g~LP~l~~~~~f~g~IYaT~pT 130 (203)
.|++||+||.| |+||++.+.+.++ .+||+++.+
T Consensus 43 ~l~~Il~TH~H~DHigG~~~l~~~~~--~~V~~~~~~ 77 (248)
T TIGR03413 43 TLTAILLTHHHHDHVGGVAELLEAFP--APVYGPAEE 77 (248)
T ss_pred eeeEEEeCCCCccccCCHHHHHHHCC--CeEEecccc
Confidence 58999999999 9999999987554 789998654
No 34
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=97.64 E-value=0.00022 Score=61.42 Aligned_cols=34 Identities=18% Similarity=0.197 Sum_probs=28.0
Q ss_pred CccEEEEcCCC--CccchHHHHhhcCCCCcEEecchh
Q psy9121 96 EVNMILISNYL--SMLALPFITEGTGFEGVVYATEPT 130 (203)
Q Consensus 96 ~IDaVlISH~H--h~g~LP~l~~~~~f~g~IYaT~pT 130 (203)
++|+||+||.| |+||++.+.+.++ ..+||+...+
T Consensus 45 ~l~~IllTH~H~DHigG~~~l~~~~~-~~~V~~~~~~ 80 (251)
T PRK10241 45 QPEAIFLTHHHHDHVGGVKELVEKFP-QIVVYGPQET 80 (251)
T ss_pred ccCEEEeCCCCchhhccHHHHHHHCC-CCEEEecccc
Confidence 46899999999 9999999988543 4689996554
No 35
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=97.52 E-value=0.00025 Score=64.95 Aligned_cols=85 Identities=13% Similarity=0.154 Sum_probs=66.7
Q ss_pred CCCCCeEEEEeCCeEEEEeCCCCCccccccCCCCccCCcccCCCCCCCcccchhhhhhhhhhhhcCcccccCCCCCCCCC
Q psy9121 9 HPNKACYILRFKEMTIMLDCGLCALPLMHFLPLPIIPTAKFNNLPSWIPRECTEAQLEGELKECCGKVFVDSAPEFQPPL 88 (203)
Q Consensus 9 ~~~~sc~ll~~~~~~ILlDCGl~~~~~~~f~p~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vds~~~~~~p~ 88 (203)
+++-+.||+. ++..+|+|-+-.- +.++.+....
T Consensus 33 GttyNSYLI~-~~k~aLID~~~~~-------------------------------~~~~~l~~l~--------------- 65 (388)
T COG0426 33 GTTYNSYLIV-GDKTALIDTVGEK-------------------------------FFDEYLENLS--------------- 65 (388)
T ss_pred CceeeeEEEe-CCcEEEECCCCcc-------------------------------hHHHHHHHHH---------------
Confidence 4778899999 9999999988331 1111222221
Q ss_pred CCCCCCCCccEEEEcCCC--CccchHHHHhhcCCCCcEEecchhHHHHHhhHHHHH
Q psy9121 89 SQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQIGKFYLEELV 142 (203)
Q Consensus 89 ~~~~d~~~IDaVlISH~H--h~g~LP~l~~~~~f~g~IYaT~pT~~l~~lll~d~~ 142 (203)
..+|+.+||-|+++|.. |+|+||-+.+... +.+|+||.+.+++.+.+..+..
T Consensus 66 -~~id~k~iDYIi~~H~ePDhsg~l~~ll~~~p-~a~ii~s~~~~~~L~~~~~~~~ 119 (388)
T COG0426 66 -KYIDPKEIDYIIVNHTEPDHSGSLPELLELAP-NAKIICSKLAARFLKGFYHDPE 119 (388)
T ss_pred -hhcChhcCeEEEECCCCcchhhhHHHHHHhCC-CCEEEeeHHHHHHHHHhcCCcc
Confidence 46799999999999999 9999999998766 7999999999999888766654
No 36
>KOG2121|consensus
Probab=97.41 E-value=3.6e-05 Score=74.69 Aligned_cols=100 Identities=21% Similarity=0.307 Sum_probs=59.4
Q ss_pred CEEEEecCC-------CCCCeEEEEeCCeE-EEEeCCCCCccccccCCCCccCCcccCCCCCCCcccchhhhhhhhhhhh
Q psy9121 1 MKVYSLSSH-------PNKACYILRFKEMT-IMLDCGLCALPLMHFLPLPIIPTAKFNNLPSWIPRECTEAQLEGELKEC 72 (203)
Q Consensus 1 Mkl~~LG~~-------~~~sc~ll~~~~~~-ILlDCGl~~~~~~~f~p~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~ 72 (203)
|+|.+||.+ ..-|.++++++.+. ||||||...- ++|.+.
T Consensus 443 ~eIi~LGTGSaiPskyRNVSS~lv~i~~~~~IlLDCGEgTl---------------------------------gql~R~ 489 (746)
T KOG2121|consen 443 PEIIFLGTGSAIPSKYRNVSSILVRIDSDDSILLDCGEGTL---------------------------------GQLVRH 489 (746)
T ss_pred cEEEEecCCccCCCcccceEEEEEeccCCccEEeecCCchH---------------------------------HHHHHH
Confidence 678999987 55789999997777 9999996521 112222
Q ss_pred cCcccccCCCCCCCCCCCCCCCCCccEEEEcCCC--CccchHHHHhhc-CCCCcEEecchhHHHHHhhHHHHHHHHh
Q psy9121 73 CGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYL--SMLALPFITEGT-GFEGVVYATEPTLQIGKFYLEELVQYIE 146 (203)
Q Consensus 73 ~~~~~vds~~~~~~p~~~~~d~~~IDaVlISH~H--h~g~LP~l~~~~-~f~g~IYaT~pT~~l~~lll~d~~~~~~ 146 (203)
-+. +.. .. -..++-||+|||.| |..||+-+.+.+ .+.. --++.|-.-.++.-++.+++-..
T Consensus 490 YG~---~~~--------~~-~lr~LraI~ISHlHADHh~Gl~~vL~~r~k~~k-~~~~~pl~vv~P~ql~~wl~~y~ 553 (746)
T KOG2121|consen 490 YGV---ENV--------DT-ALRKLRAIFISHLHADHHLGLISVLQARTKLLK-GVENSPLLVVAPRQLKKWLQEYH 553 (746)
T ss_pred hhh---cch--------HH-HHHhHHHHHHHhhcccccccHHHHHHHHHHhcc-ccccCceEEeChHHHHHHHHHHh
Confidence 110 000 11 14688999999999 888888776533 2211 01234444444445555554433
No 37
>PLN02469 hydroxyacylglutathione hydrolase
Probab=97.36 E-value=0.00032 Score=60.85 Aligned_cols=34 Identities=12% Similarity=0.035 Sum_probs=28.0
Q ss_pred CCccEEEEcCCC--CccchHHHHhhcCCCCcEEecch
Q psy9121 95 SEVNMILISNYL--SMLALPFITEGTGFEGVVYATEP 129 (203)
Q Consensus 95 ~~IDaVlISH~H--h~g~LP~l~~~~~f~g~IYaT~p 129 (203)
.+|++||+||.| |+||++.|.+.++ ..+||+...
T Consensus 45 ~~l~~Il~TH~H~DH~gG~~~l~~~~~-~~~V~~~~~ 80 (258)
T PLN02469 45 AKIKLVLTTHHHWDHAGGNEKIKKLVP-GIKVYGGSL 80 (258)
T ss_pred CcccEEEecCCCCccccCHHHHHHHCC-CCEEEEech
Confidence 379999999999 9999999988543 368998653
No 38
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=97.35 E-value=0.0014 Score=53.67 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=28.4
Q ss_pred CccEEEEcCCC--CccchHHHHhhcCCCCcEEecchhHHH
Q psy9121 96 EVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQI 133 (203)
Q Consensus 96 ~IDaVlISH~H--h~g~LP~l~~~~~f~g~IYaT~pT~~l 133 (203)
+|+.|++||.| |+|++..+.+... ..++|+.+.....
T Consensus 62 ~i~~vilTH~H~DH~gg~~~~~~~~~-~~~~~~~~~~~~~ 100 (252)
T COG0491 62 DVDAILLTHGHFDHIGGAAVLKEAFG-AAPVIAPAEVPLL 100 (252)
T ss_pred ChheeeecCCchhhhccHHHHHhhcC-CceEEccchhhhh
Confidence 89999999999 9999999987544 4677555554433
No 39
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=97.34 E-value=0.00055 Score=58.62 Aligned_cols=81 Identities=20% Similarity=0.155 Sum_probs=52.3
Q ss_pred CEEEEecCCCCCCeEEEEeCCeEEEEeCCCCCccccccCCCCccCCcccCCCCCCCcccchhhhhhhhhhhhcCcccccC
Q psy9121 1 MKVYSLSSHPNKACYILRFKEMTIMLDCGLCALPLMHFLPLPIIPTAKFNNLPSWIPRECTEAQLEGELKECCGKVFVDS 80 (203)
Q Consensus 1 Mkl~~LG~~~~~sc~ll~~~~~~ILlDCGl~~~~~~~f~p~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vds 80 (203)
|++|.||. +|++|+.++.+||+|=.+.... + +.+.+
T Consensus 7 m~itwlGh----a~~lie~~~~~iliDP~~~~~~-----------~------~~~~~----------------------- 42 (258)
T COG2220 7 MKITWLGH----AAFLIETGGKRILIDPVLSGAP-----------S------PSNFP----------------------- 42 (258)
T ss_pred ceEEEecc----eEEEEEECCEEEEECcccCCCC-----------C------ccccc-----------------------
Confidence 88999999 9999999999999998865321 0 00000
Q ss_pred CCCCCCCCCCCCCCCCccEEEEcCCC-CccchHHHHhhcCCCCcEEecchhH
Q psy9121 81 APEFQPPLSQLVDFSEVNMILISNYL-SMLALPFITEGTGFEGVVYATEPTL 131 (203)
Q Consensus 81 ~~~~~~p~~~~~d~~~IDaVlISH~H-h~g~LP~l~~~~~f~g~IYaT~pT~ 131 (203)
. .........+|+|+|||-| .....+-+.....-..++++++...
T Consensus 43 --~----~~~~~~~~~~D~ilitH~H~DHl~~~~~~~~~~~~~~~~~~p~~~ 88 (258)
T COG2220 43 --G----GLFEDLLPPIDYILITHDHYDHLDDETLIALRTNKAPVVVVPLGA 88 (258)
T ss_pred --C----cCChhhcCCCCEEEEeCCCccccCHHHHHHHhcCCCcEEEeHHHH
Confidence 0 0012235689999999999 5566666555332134666665554
No 40
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=97.13 E-value=0.00098 Score=58.11 Aligned_cols=35 Identities=29% Similarity=0.430 Sum_probs=31.0
Q ss_pred CEEEEecCC---CCCCeEEEEeCCeEEEEeCCCCCccc
Q psy9121 1 MKVYSLSSH---PNKACYILRFKEMTIMLDCGLCALPL 35 (203)
Q Consensus 1 Mkl~~LG~~---~~~sc~ll~~~~~~ILlDCGl~~~~~ 35 (203)
||+++++.. |-.-|.+|++++.+||+|-|+.....
T Consensus 1 MkV~Pla~eSLGVRSmAt~vet~dv~ILiDpGVsLaPk 38 (304)
T COG2248 1 MKVIPLASESLGVRSMATFVETKDVGILIDPGVSLAPK 38 (304)
T ss_pred CceeeccccccchhhhhheeecCCeeEEECCccccCcc
Confidence 899999975 77789999999999999999987643
No 41
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=96.92 E-value=0.002 Score=57.19 Aligned_cols=40 Identities=5% Similarity=0.102 Sum_probs=31.7
Q ss_pred CCCCCCCCCCCccEEEEcCCC--CccchHHHHhhcCCCCcEEe
Q psy9121 86 PPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYA 126 (203)
Q Consensus 86 ~p~~~~~d~~~IDaVlISH~H--h~g~LP~l~~~~~f~g~IYa 126 (203)
+|.+....+.+||.+++||+| |+||++-+.+...+ ..+|+
T Consensus 80 ip~Lk~~GV~~iD~lIlTH~d~DHiGg~~~vl~~~~v-~~~~i 121 (293)
T COG2333 80 IPYLKSLGVRKLDQLILTHPDADHIGGLDEVLKTIKV-PELWI 121 (293)
T ss_pred hhhHhHcCCccccEEEeccCCccccCCHHHHHhhCCC-CcEEE
Confidence 344555678899999999999 99999999985554 45655
No 42
>PLN02398 hydroxyacylglutathione hydrolase
Probab=96.60 E-value=0.011 Score=53.30 Aligned_cols=35 Identities=11% Similarity=-0.008 Sum_probs=29.6
Q ss_pred CCccEEEEcCCC--CccchHHHHhhcCCCCcEEecchhH
Q psy9121 95 SEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTL 131 (203)
Q Consensus 95 ~~IDaVlISH~H--h~g~LP~l~~~~~f~g~IYaT~pT~ 131 (203)
.+|++||+||.| |+||+..|.+.+| .+||+...+.
T Consensus 120 ~~L~~ILlTH~H~DH~GG~~~L~~~~g--a~V~g~~~~~ 156 (329)
T PLN02398 120 RNLTYILNTHHHYDHTGGNLELKARYG--AKVIGSAVDK 156 (329)
T ss_pred CCceEEEECCCCchhhCCHHHHHHhcC--CEEEEehHHh
Confidence 479999999999 9999999988654 7999986644
No 43
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=96.20 E-value=0.0051 Score=54.22 Aligned_cols=40 Identities=5% Similarity=-0.108 Sum_probs=27.5
Q ss_pred CCCccEEEEcCCC--CccchHHHHhhcCC-----CC-cEEecchhHHH
Q psy9121 94 FSEVNMILISNYL--SMLALPFITEGTGF-----EG-VVYATEPTLQI 133 (203)
Q Consensus 94 ~~~IDaVlISH~H--h~g~LP~l~~~~~f-----~g-~IYaT~pT~~l 133 (203)
...++.|+|||.| |++|||.+.-..+. .. .||.-+.+.+.
T Consensus 38 ~~~l~~vFlTH~H~DHi~gL~~~~~~~~~~~~~~~p~~Vy~P~g~~~~ 85 (277)
T TIGR02650 38 VAAFKVFFLHGGHDDHAAGLGGVNIINNGGGDDEEKLDDFFPKEGNAA 85 (277)
T ss_pred HhhcCEEEeecCchhhhcchHHHHhhhhhcccCCCCCeEECCcchhHH
Confidence 4689999999999 99999755542211 12 38876665554
No 44
>PLN02962 hydroxyacylglutathione hydrolase
Probab=95.91 E-value=0.034 Score=48.16 Aligned_cols=32 Identities=0% Similarity=-0.083 Sum_probs=26.0
Q ss_pred CccEEEEcCCC--CccchHHHHhhcCCCCcEEecc
Q psy9121 96 EVNMILISNYL--SMLALPFITEGTGFEGVVYATE 128 (203)
Q Consensus 96 ~IDaVlISH~H--h~g~LP~l~~~~~f~g~IYaT~ 128 (203)
.|.+||+||.| |++|++.+.+.++ ..+||+..
T Consensus 61 ~i~~Il~TH~H~DHigg~~~l~~~~~-~a~v~~~~ 94 (251)
T PLN02962 61 KLIYAMNTHVHADHVTGTGLLKTKLP-GVKSIISK 94 (251)
T ss_pred eeEEEEcCCCCchhHHHHHHHHHHCC-CCeEEecc
Confidence 57899999999 9999999987532 36788854
No 45
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=95.25 E-value=0.053 Score=37.51 Aligned_cols=22 Identities=18% Similarity=0.415 Sum_probs=19.4
Q ss_pred CCeEEEEeCCeEEEE-eCCCCCc
Q psy9121 12 KACYILRFKEMTIML-DCGLCAL 33 (203)
Q Consensus 12 ~sc~ll~~~~~~ILl-DCGl~~~ 33 (203)
+||++|.+++.+.|+ +||...+
T Consensus 12 ~p~l~l~~d~~rYlFGn~gEGtQ 34 (63)
T PF13691_consen 12 GPSLLLFFDSRRYLFGNCGEGTQ 34 (63)
T ss_pred CCEEEEEeCCceEEeccCCcHHH
Confidence 399999999999999 9996644
No 46
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=94.19 E-value=0.14 Score=46.28 Aligned_cols=41 Identities=15% Similarity=0.128 Sum_probs=29.7
Q ss_pred CCccEEEEcCCC--CccchHHHHhhcC----CCCcEEecchhHHHHH
Q psy9121 95 SEVNMILISNYL--SMLALPFITEGTG----FEGVVYATEPTLQIGK 135 (203)
Q Consensus 95 ~~IDaVlISH~H--h~g~LP~l~~~~~----f~g~IYaT~pT~~l~~ 135 (203)
..|.+.+|||+| |+.||=.-+-... -.-+||+.+.|.+.-+
T Consensus 78 ~~I~~ylItH~HLDHi~gLvinsp~~~~~~~~~K~i~gl~~ti~alk 124 (335)
T PF02112_consen 78 NHIKGYLITHPHLDHIAGLVINSPEDYLPNSSPKTIYGLPSTIEALK 124 (335)
T ss_pred HhhheEEecCCchhhHHHHHhcCcccccccCCCCcEEECHHHHHHHH
Confidence 579999999999 9999943332110 1346999999988743
No 47
>KOG0813|consensus
Probab=92.92 E-value=0.11 Score=45.56 Aligned_cols=34 Identities=12% Similarity=-0.002 Sum_probs=28.3
Q ss_pred CCccEEEEcCCC--CccchHHHHhhcCCCCcEEecc
Q psy9121 95 SEVNMILISNYL--SMLALPFITEGTGFEGVVYATE 128 (203)
Q Consensus 95 ~~IDaVlISH~H--h~g~LP~l~~~~~f~g~IYaT~ 128 (203)
..|++||.||.| |+||+.=+.+......+||...
T Consensus 50 ~~l~~Il~THhH~DHsGGn~~i~~~~~~~~~v~g~~ 85 (265)
T KOG0813|consen 50 RRLTAILTTHHHYDHSGGNEDIKREIPYDIKVIGGA 85 (265)
T ss_pred CceeEEEeccccccccCcHHHHHhhccCCcEEecCC
Confidence 579999999999 9999999998655566777753
No 48
>KOG1137|consensus
Probab=85.25 E-value=4.8 Score=38.99 Aligned_cols=49 Identities=12% Similarity=-0.071 Sum_probs=37.3
Q ss_pred CCccEEEEcCCC--CccchHHHHhhcCCC-----CcEEecchhHHHHHhhHHHHHH
Q psy9121 95 SEVNMILISNYL--SMLALPFITEGTGFE-----GVVYATEPTLQIGKFYLEELVQ 143 (203)
Q Consensus 95 ~~IDaVlISH~H--h~g~LP~l~~~~~f~-----g~IYaT~pT~~l~~lll~d~~~ 143 (203)
..+-++.+.|.| |.++||.+....--+ -||||--.+.++..++.|.+-.
T Consensus 206 estygv~~h~~r~~re~rlt~vIh~~v~rGGR~L~PvFAlgrAqELllildeyw~~ 261 (668)
T KOG1137|consen 206 ESTYGVQIHEPREEREGRLTWVIHSTVPRGGRVLIPVFALGRAQELLLILDEYWGN 261 (668)
T ss_pred EeeeeEEecCchHHhhhhhhhhHHhhccCCCceEeeeeecchHHHHHHHHHHHhhc
Confidence 467788888998 999999988644334 2799999999887777666544
No 49
>KOG3592|consensus
Probab=80.58 E-value=1.3 Score=43.98 Aligned_cols=28 Identities=11% Similarity=0.268 Sum_probs=20.2
Q ss_pred EEEecCCCCCCeEEEEeCCeEEEEeCCCC
Q psy9121 3 VYSLSSHPNKACYILRFKEMTIMLDCGLC 31 (203)
Q Consensus 3 l~~LG~~~~~sc~ll~~~~~~ILlDCGl~ 31 (203)
.|.|||+.|- .-|.-++|.+||++-|-+
T Consensus 40 cYIfpGg~gd-aALFavnGf~iLv~Ggse 67 (934)
T KOG3592|consen 40 CYIFPGGRGD-AALFAVNGFNILVNGGSE 67 (934)
T ss_pred EEECCCCCCc-ceeEeecceEEeecCCcc
Confidence 4667775544 446789999999998854
No 50
>KOG3798|consensus
Probab=66.87 E-value=8.6 Score=34.09 Aligned_cols=21 Identities=24% Similarity=0.529 Sum_probs=17.2
Q ss_pred CCCCCCCCCCCccEEEEcCCC
Q psy9121 86 PPLSQLVDFSEVNMILISNYL 106 (203)
Q Consensus 86 ~p~~~~~d~~~IDaVlISH~H 106 (203)
.|-...-++.++|.+++||.|
T Consensus 122 ~pp~~~~~~p~~d~~~vsh~h 142 (343)
T KOG3798|consen 122 PPPMKLEDLPDLDFAVVSHDH 142 (343)
T ss_pred CCchhhccCCCCceecccccc
Confidence 344456689999999999999
No 51
>KOG4736|consensus
Probab=62.10 E-value=11 Score=33.76 Aligned_cols=21 Identities=10% Similarity=0.151 Sum_probs=18.4
Q ss_pred CCCCCCccEEEEcCCC--Cccch
Q psy9121 91 LVDFSEVNMILISNYL--SMLAL 111 (203)
Q Consensus 91 ~~d~~~IDaVlISH~H--h~g~L 111 (203)
.+-+.+||.|.+||.| |+|.+
T Consensus 120 ~vt~d~i~~vv~t~~~~~hlgn~ 142 (302)
T KOG4736|consen 120 GVTLDQIDSVVITHKSPGHLGNN 142 (302)
T ss_pred CcChhhcceeEEeccCccccccc
Confidence 4557899999999999 99988
No 52
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=52.10 E-value=8.6 Score=32.30 Aligned_cols=40 Identities=18% Similarity=0.110 Sum_probs=25.5
Q ss_pred CCCccEEEEcCCCCccchHHHHhhcCCCCcEEecchhHHHHH
Q psy9121 94 FSEVNMILISNYLSMLALPFITEGTGFEGVVYATEPTLQIGK 135 (203)
Q Consensus 94 ~~~IDaVlISH~Hh~g~LP~l~~~~~f~g~IYaT~pT~~l~~ 135 (203)
..-|+.|+|||..|+-+---+.+.+ ..+||+-...++...
T Consensus 53 ~ggv~~IvLTn~dHvR~A~~ya~~~--~a~i~~p~~d~~~~p 92 (199)
T PF14597_consen 53 LGGVAWIVLTNRDHVRAAEDYAEQT--GAKIYGPAADAAQFP 92 (199)
T ss_dssp TT--SEEE-SSGGG-TTHHHHHHHS----EEEEEGGGCCC-S
T ss_pred cCCceEEEEeCChhHhHHHHHHHHh--CCeeeccHHHHhhCC
Confidence 4678999999999998888887754 489998666554433
No 53
>cd06908 M14_AGBL4_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-4, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human AGBL4 and the mouse cytosolic carboxypeptidase (CCP)-6. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal
Probab=43.73 E-value=38 Score=29.57 Aligned_cols=33 Identities=9% Similarity=0.120 Sum_probs=27.0
Q ss_pred EEEEecCC-CCCCeEEEEeCC----------eEEEEeCCCCCcc
Q psy9121 2 KVYSLSSH-PNKACYILRFKE----------MTIMLDCGLCALP 34 (203)
Q Consensus 2 kl~~LG~~-~~~sc~ll~~~~----------~~ILlDCGl~~~~ 34 (203)
++..+|.. .|++|.+|++.. ..|+++|++|+.+
T Consensus 13 ~~~~iG~S~eGR~i~~l~It~~~~~~~~~~k~~I~i~ariHp~E 56 (261)
T cd06908 13 RREQLGQSVQKRRLDLLTIDSPDNLREDSEKKVIFITARVHPGE 56 (261)
T ss_pred EEEEeEEcCCCCeeEEEEEcCCCccccCCCCcEEEEECCcCCCC
Confidence 56788876 899999999853 4589999999764
No 54
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=39.69 E-value=29 Score=25.49 Aligned_cols=46 Identities=24% Similarity=0.281 Sum_probs=31.1
Q ss_pred CCCCCccEEEEcCCCCccchHHHHhhcCCCCcEEecchhHHHHHhh-HH
Q psy9121 92 VDFSEVNMILISNYLSMLALPFITEGTGFEGVVYATEPTLQIGKFY-LE 139 (203)
Q Consensus 92 ~d~~~IDaVlISH~Hh~g~LP~l~~~~~f~g~IYaT~pT~~l~~ll-l~ 139 (203)
++...|+.|+|+|.-.-++-.|. +..+|.++||+ +|+.++-+.+ |.
T Consensus 9 l~~~gv~lv~I~~g~~~~~~~f~-~~~~~p~~ly~-D~~~~lY~~lg~~ 55 (115)
T PF13911_consen 9 LEAAGVKLVVIGCGSPEGIEKFC-ELTGFPFPLYV-DPERKLYKALGLK 55 (115)
T ss_pred HHHcCCeEEEEEcCCHHHHHHHH-hccCCCCcEEE-eCcHHHHHHhCCc
Confidence 44578999999988754555565 45889999996 4456553333 44
No 55
>cd06907 M14_AGBL2-3_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-2, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This subgroup includes the human AGBL-2, and -3, and the mouse cytosolic carboxypeptidase (CCPs)-2, and -3. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N
Probab=37.89 E-value=53 Score=28.79 Aligned_cols=33 Identities=15% Similarity=0.283 Sum_probs=27.5
Q ss_pred EEEEecCC-CCCCeEEEEeC-----------CeEEEEeCCCCCcc
Q psy9121 2 KVYSLSSH-PNKACYILRFK-----------EMTIMLDCGLCALP 34 (203)
Q Consensus 2 kl~~LG~~-~~~sc~ll~~~-----------~~~ILlDCGl~~~~ 34 (203)
++..||.. .|++|.+|++. ...|++|+++|+++
T Consensus 15 ~~~~lg~S~eGR~i~~LtIt~~~~~~~~~~~K~~I~I~ariHp~E 59 (261)
T cd06907 15 KLRVLCRTLAGNTVYLLTITSPSSNPSLAAAKKAVVLTARVHPGE 59 (261)
T ss_pred EEEEEEECCCCCeeeEEEEcCCCccccccCCCCEEEEECCcCCCh
Confidence 56778876 89999999984 36799999999875
No 56
>KOG1361|consensus
Probab=35.56 E-value=21 Score=33.97 Aligned_cols=39 Identities=13% Similarity=0.281 Sum_probs=28.0
Q ss_pred CccEEEEcCCC--CccchHHHHhhcCC-CCcEEecchhHHHHHhhHH
Q psy9121 96 EVNMILISNYL--SMLALPFITEGTGF-EGVVYATEPTLQIGKFYLE 139 (203)
Q Consensus 96 ~IDaVlISH~H--h~g~LP~l~~~~~f-~g~IYaT~pT~~l~~lll~ 139 (203)
..-+=++||+| |-.|| + ..| +|++||..-|+.+-.+-|.
T Consensus 112 ~~s~yFLsHFHSDHy~GL---~--~sW~~p~lYCS~ita~Lv~~~~~ 153 (481)
T KOG1361|consen 112 GCSAYFLSHFHSDHYIGL---T--KSWSHPPLYCSPITARLVPLKVS 153 (481)
T ss_pred ccceeeeecccccccccc---c--ccccCCcccccccchhhhhhhcc
Confidence 34567999999 97766 2 234 4679999999988655543
No 57
>cd06234 M14_Nna1_like_1 A bacterial subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP)-like proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins (such as alpha-tubulin in eukaryotes) to remove a C-terminal tyrosine. Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain.
Probab=33.52 E-value=73 Score=27.82 Aligned_cols=34 Identities=9% Similarity=0.106 Sum_probs=27.6
Q ss_pred CEEEEecCC-CCCCeEEEEeC-----CeEEEEeCCCCCcc
Q psy9121 1 MKVYSLSSH-PNKACYILRFK-----EMTIMLDCGLCALP 34 (203)
Q Consensus 1 Mkl~~LG~~-~~~sc~ll~~~-----~~~ILlDCGl~~~~ 34 (203)
+++..+|.. .|+++.+|++. ...|++++|+|..+
T Consensus 29 v~~~~iG~S~eGR~i~~l~I~~~~~~k~~V~i~a~iH~~E 68 (263)
T cd06234 29 VRLEVLGQTVQGRDIDLLTFGEPGPGKKKLWIIARQHPGE 68 (263)
T ss_pred eEEEEEEEcCCCCeEEEEEEccCCCCCCEEEEECCCCCCc
Confidence 357788866 89999999983 46899999999764
No 58
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=31.29 E-value=30 Score=31.07 Aligned_cols=40 Identities=15% Similarity=0.219 Sum_probs=29.8
Q ss_pred CCCccEEEEcCCC--Cccch----HHHHhhcCCCCcEEecchhHHHHH
Q psy9121 94 FSEVNMILISNYL--SMLAL----PFITEGTGFEGVVYATEPTLQIGK 135 (203)
Q Consensus 94 ~~~IDaVlISH~H--h~g~L----P~l~~~~~f~g~IYaT~pT~~l~~ 135 (203)
...|.--+|||+| |+.|| |-..+. -..+||+-.-|.+.-+
T Consensus 110 ~Q~I~~y~ITH~HLDHIsGlVinSp~~~~q--kkkTI~gl~~tIDvL~ 155 (356)
T COG5212 110 RQSINSYFITHAHLDHISGLVINSPDDSKQ--KKKTIYGLADTIDVLR 155 (356)
T ss_pred hhhhhheEeccccccchhceeecCcccccc--CCceEEechhHHHHHH
Confidence 3568899999999 99888 444442 2357999998888744
No 59
>PTZ00065 60S ribosomal protein L14; Provisional
Probab=23.18 E-value=1.2e+02 Score=23.90 Aligned_cols=26 Identities=15% Similarity=0.465 Sum_probs=22.2
Q ss_pred EEecCCCCCCeEEEEe-CCeEEEEeCC
Q psy9121 4 YSLSSHPNKACYILRF-KEMTIMLDCG 29 (203)
Q Consensus 4 ~~LG~~~~~sc~ll~~-~~~~ILlDCG 29 (203)
...|...|.-|.++++ +..++|+|-+
T Consensus 16 i~~Gp~~GKL~vIVDIID~nRvLVDGP 42 (130)
T PTZ00065 16 IQYGPDAGKLCFIVDIVTPTRVLVDGA 42 (130)
T ss_pred EecCCCCCCEEEEEEEEcCCeEEEeCC
Confidence 3456668999999997 9999999977
No 60
>cd06235 M14_Nna1_like_2 Subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human Nna1/AGTPBP-1 and AGBL -2, -3, -4, and -5, and the mouse Nna1/CCP-1 and CCP -2 through -6. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induc
Probab=22.33 E-value=1.4e+02 Score=25.86 Aligned_cols=34 Identities=12% Similarity=0.063 Sum_probs=27.0
Q ss_pred CEEEEecCC-CCCCeEEEEeCC-----------eEEEEeCCCCCcc
Q psy9121 1 MKVYSLSSH-PNKACYILRFKE-----------MTIMLDCGLCALP 34 (203)
Q Consensus 1 Mkl~~LG~~-~~~sc~ll~~~~-----------~~ILlDCGl~~~~ 34 (203)
+++..+|.. .|+++++|.+.+ ..|++.+|+|..+
T Consensus 13 ~~~~~iG~S~eGr~i~~l~i~~~~~~~~~~~~k~~V~i~a~iH~~E 58 (258)
T cd06235 13 LKRKILCTTLGGLPVPLLTITSPSSKSIPIKKKKVIVITARQHPGE 58 (258)
T ss_pred eEEEEeEEcCCCCeeeEEEEeCCcccccccCCCcEEEEECCcCCCC
Confidence 356778876 789999999853 4799999999763
No 61
>cd06905 Peptidase_M14-like_8 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=22.28 E-value=1.4e+02 Score=27.33 Aligned_cols=34 Identities=12% Similarity=0.268 Sum_probs=27.0
Q ss_pred CEEEEecCC-CCCCeEEEEeCC---------eEEEEeCCCCCcc
Q psy9121 1 MKVYSLSSH-PNKACYILRFKE---------MTIMLDCGLCALP 34 (203)
Q Consensus 1 Mkl~~LG~~-~~~sc~ll~~~~---------~~ILlDCGl~~~~ 34 (203)
+++..+|.. .|++.++|++.. ..|++|||+|..+
T Consensus 25 v~l~~IG~S~EGR~I~~l~Is~~~~~~~~~Kp~I~i~~giHarE 68 (360)
T cd06905 25 CSLESIGKSYEGRDIWLLTLTNQATGPDREKPAFWIDANIHATE 68 (360)
T ss_pred eEEEEeeecCCCCceEEEEecCCCCCCCCCCcEEEEecCCCCCc
Confidence 367788876 889999999853 3699999999754
No 62
>PF00797 Acetyltransf_2: N-acetyltransferase; InterPro: IPR001447 Arylamine N-acetyltransferase (NAT) is a cytosolic enzyme of approximately 30 kDa. It facilitates the transfer of an acetyl group from acetyl coenzyme A on to a wide range of arylamine, N-hydroxyarylamines and hydrazines. Acetylation of these compounds generally results in inactivation. NAT is found in many species from Mycobacteria (Mycobacterium tuberculosis, Mycobacterium smegmatis etc) to Homo sapiens (Human). It was the first enzyme to be observed to have polymorphic activity amongst human individuals. NAT is responsible for the inactivation of Isoniazid (a drug used to treat tuberculosis) in humans. The NAT protein has also been shown to be involved in the breakdown of folic acid. NAT catalyses the reaction: Acetyl-coA + arylamine = coA + N-acetylarylamine NAT is the target of a common genetic polymorphism of clinical relevance in humans. The N-acetylation polymorphism is determined by low or high NAT activity in liver. NAT has been implicated in the action and toxicity of amine-containing drugs, and in the susceptibility to cancer and systematic lupus erythematosus. Two highly similar human genes for NAT, termed NAT1 and NAT2, encode genetically invariant and variant NAT proteins, respectively. ; GO: 0016407 acetyltransferase activity, 0008152 metabolic process; PDB: 1W6F_A 1W5R_A 1GX3_D 2PQT_A 2IJA_A 1W4T_A 2BSZ_B 3D9W_B 3LTW_A 3LNB_A ....
Probab=21.02 E-value=1.2e+02 Score=25.09 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=17.5
Q ss_pred cCCCCCCHHHHHHHHhcceeecCCcE
Q psy9121 175 SWRQLYNLQSVYASLARVQMVGYDEK 200 (203)
Q Consensus 175 ~~~~lYt~~Dv~~~l~~i~~v~Y~e~ 200 (203)
....+-+.+|..++++..=.++..++
T Consensus 213 ~~~~l~~~ee~~~iL~~~Fgi~l~~~ 238 (240)
T PF00797_consen 213 TERTLTSEEELLEILKEYFGIDLDEE 238 (240)
T ss_dssp EEEEESSHHHHHHHHHHTS---GSS-
T ss_pred EEEEeCCHHHHHHHHHHhCCcccCCC
Confidence 34578899999999998777766554
Done!