RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9121
         (203 letters)



>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein
           2, CFT2 {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 514

 Score = 53.3 bits (127), Expect = 3e-09
 Identities = 22/204 (10%), Positives = 50/204 (24%), Gaps = 76/204 (37%)

Query: 4   YSLSSHPNKACYILRFKEMTIMLDCGLCALPLMHFLPLPIIPTAKFNNLPSWIPRECTEA 63
                       ++RF  +T+++D G                         W P + +  
Sbjct: 7   CCDDGSGTTVGSVVRFDNVTLLIDPG-------------------------WNPSKVSYE 41

Query: 64  QLEGELKECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLS--MLALPFI----TEG 117
           Q     ++                        E+++I++S      + A   +    T  
Sbjct: 42  QCIKYWEK---------------------VIPEIDVIILSQPTIECLGAHSLLYYNFTSH 80

Query: 118 TGFEGVVYATEPTLQIGKFYLEELVQYIEKTPKLTSASHWKDISHLISPFSEDIKPRSWR 177
                 VYAT P + +G+    +                                     
Sbjct: 81  FISRIQVYATLPVINLGRVSTIDSYASAGVIGP------------------------YDT 116

Query: 178 QLYNLQSVYASLARVQMVGYDEKL 201
              +L+ +  S   +  + Y + +
Sbjct: 117 NKLDLEDIEISFDHIVPLKYSQLV 140


>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation
           specificity factor subunit 3 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 451

 Score = 38.2 bits (87), Expect = 4e-04
 Identities = 29/135 (21%), Positives = 48/135 (35%), Gaps = 48/135 (35%)

Query: 12  KACYILRFKEMTIMLDCGLCALPLMHFLPLPIIPTAKFNNLPSWIPRECTEAQLEGELKE 71
           ++C IL FK   IMLDCG+                                         
Sbjct: 17  RSCIILEFKGRKIMLDCGI----------------------------------------- 35

Query: 72  CCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLS--MLALPFITEGTGFEGVVYATEP 129
                          P   L+D +E++++LIS++      ALP+  + T F+G  + T  
Sbjct: 36  -----HPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHA 90

Query: 130 TLQIGKFYLEELVQY 144
           T  I ++ L + V+ 
Sbjct: 91  TKAIYRWLLSDYVKV 105


>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein
           TTHA0252 {Thermus thermophilus [TaxId: 274]}
          Length = 431

 Score = 31.5 bits (70), Expect = 0.063
 Identities = 21/132 (15%), Positives = 40/132 (30%), Gaps = 52/132 (39%)

Query: 12  KACYILRFKEMTIMLDCGLCALPLMHFLPLPIIPTAKFNNLPSWIPRECTEAQLEGELKE 71
            + ++L      ++LDCG+                                         
Sbjct: 14  GSAHLLLAGGRRVLLDCGM----------------------------------------- 32

Query: 72  CCGKVFVDSAPEFQPPLSQL-VDFSEVNMILISNYLS--MLALPFITEGTGFEGVVYATE 128
                      E     +    D  EV+ +L+++     +  LP +    G+ G VYAT 
Sbjct: 33  -------FQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFR-EGYRGPVYATR 84

Query: 129 PTLQIGKFYLEE 140
            T+ + +  LE+
Sbjct: 85  ATVLLMEIVLED 96


>d1vqoo1 c.12.1.1 (O:1-115) Ribosomal protein L18e {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 115

 Score = 26.6 bits (59), Expect = 1.00
 Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 6/46 (13%)

Query: 137 YLEELVQYIEKTPKLTSASHWKDISHLISPFSEDIKPRSWRQLYNL 182
            L  L+  ++   + +  + W D++  +       KPR      NL
Sbjct: 6   RLSSLIADLKSAARSSGGAVWGDVAERLE------KPRRTHAEVNL 45


>d1zkpa1 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (BAS1016)
          {Bacillus anthracis [TaxId: 1392]}
          Length = 244

 Score = 27.0 bits (58), Expect = 1.5
 Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 7/62 (11%)

Query: 1  MKVYSL---SSHPNK----ACYILRFKEMTIMLDCGLCALPLMHFLPLPIIPTAKFNNLP 53
          MK+  +      P      + Y+       +++DCG   L  +     P    A   +  
Sbjct: 1  MKMTVVGFWGGFPEAGEATSGYLFEHDGFRLLVDCGSGVLAQLQKYITPSDIDAVVLSHY 60

Query: 54 SW 55
            
Sbjct: 61 HH 62


>d1agxa_ c.88.1.1 (A:) Glutaminase-asparaginase {Acinetobacter
           glutaminasificans [TaxId: 474]}
          Length = 331

 Score = 27.0 bits (59), Expect = 1.6
 Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 4/53 (7%)

Query: 129 PTLQIGKFYLEELVQYIEKTPKLTSASHWKDISHLISPFSEDIKPRSWRQLYN 181
            T    K  ++ L++ +   P++   ++   I   +   SE I  +    L  
Sbjct: 24  ATYSAAKVPVDALIKAV---PQVNDLANITGI-QALQVASESITDKELLSLAR 72


>d1o7ja_ c.88.1.1 (A:) Asparaginase type II {Erwinia chrysanthemi
           [TaxId: 556]}
          Length = 325

 Score = 25.5 bits (55), Expect = 5.8
 Identities = 12/76 (15%), Positives = 25/76 (32%), Gaps = 9/76 (11%)

Query: 111 LPFI----TEGT-GFEGVVYATEPTLQIGKFYLEELVQYIEKTPKLTSASHWKDISHLIS 165
           LP I    T GT              + G   ++ L+  +   P++   ++        +
Sbjct: 2   LPNIVILATGGTIAGSAATGTQTTGYKAGALGVDTLINAV---PEVKKLANV-KGEQFSN 57

Query: 166 PFSEDIKPRSWRQLYN 181
             SE++      +L  
Sbjct: 58  MASENMTGDVVLKLSQ 73


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.138    0.424 

Gapped
Lambda     K      H
   0.267   0.0485    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 772,653
Number of extensions: 34088
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 11
Length of query: 203
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 122
Effective length of database: 1,295,466
Effective search space: 158046852
Effective search space used: 158046852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.0 bits)