BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9122
(169 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A7SBF0|INT9_NEMVE Integrator complex subunit 9 homolog OS=Nematostella vectensis
GN=ints9 PE=3 SV=1
Length = 660
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 44/74 (59%), Positives = 57/74 (77%)
Query: 92 NRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTLVVPDCYTH 151
N + EPDFPY+EALAP+QPLAMK+ +CPID LNF QANKL++EL+P LV+P+ Y+
Sbjct: 422 NTVIFTEPDFPYLEALAPYQPLAMKTCYCPIDPRLNFAQANKLLKELQPRHLVMPESYSR 481
Query: 152 PPPSFPQRTELVID 165
PP P RT+L I+
Sbjct: 482 PPVIHPHRTDLTIE 495
>sp|Q5ZKK2|INT9_CHICK Integrator complex subunit 9 OS=Gallus gallus GN=INTS9 PE=2 SV=1
Length = 658
Score = 92.8 bits (229), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 57/74 (77%)
Query: 92 NRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTLVVPDCYTH 151
N + EPDF Y++ALAP+QPLAMK ++CPIDT LNF Q +KL++E++P +V P+ YT
Sbjct: 418 NTVIFTEPDFSYLDALAPYQPLAMKCVYCPIDTRLNFIQVSKLLKEVQPLHVVCPEQYTQ 477
Query: 152 PPPSFPQRTELVID 165
PPPS RT+L+ID
Sbjct: 478 PPPSQSHRTDLMID 491
>sp|Q8K114|INT9_MOUSE Integrator complex subunit 9 OS=Mus musculus GN=Ints9 PE=2 SV=1
Length = 658
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 56/74 (75%)
Query: 92 NRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTLVVPDCYTH 151
N + EPDF Y+EALAP+QPLAMK I+CPIDT LNF Q +KL++E++P +V P+ YT
Sbjct: 418 NTIIFTEPDFSYLEALAPYQPLAMKCIYCPIDTRLNFIQVSKLLKEVQPLHVVCPEQYTQ 477
Query: 152 PPPSFPQRTELVID 165
PPP+ R +L+ID
Sbjct: 478 PPPAQAHRMDLMID 491
>sp|Q4R5Z4|INT9_MACFA Integrator complex subunit 9 OS=Macaca fascicularis GN=INTS9 PE=2
SV=1
Length = 637
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 56/74 (75%)
Query: 92 NRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTLVVPDCYTH 151
N + EPDF Y+EALAP+QPLAMK I+CPIDT LNF Q +KL++E++P +V P+ YT
Sbjct: 397 NTVIFTEPDFSYLEALAPYQPLAMKCIYCPIDTRLNFIQVSKLLKEVQPLHVVCPEQYTQ 456
Query: 152 PPPSFPQRTELVID 165
PPP+ R +L+ID
Sbjct: 457 PPPAQSHRMDLMID 470
>sp|Q9NV88|INT9_HUMAN Integrator complex subunit 9 OS=Homo sapiens GN=INTS9 PE=1 SV=2
Length = 658
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 56/74 (75%)
Query: 92 NRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTLVVPDCYTH 151
N + EPDF Y+EALAP+QPLAMK I+CPIDT LNF Q +KL++E++P +V P+ YT
Sbjct: 418 NTVIFTEPDFSYLEALAPYQPLAMKCIYCPIDTRLNFIQVSKLLKEVQPLHVVCPEQYTQ 477
Query: 152 PPPSFPQRTELVID 165
PPP+ R +L+ID
Sbjct: 478 PPPAQSHRMDLMID 491
>sp|Q2KJA6|INT9_BOVIN Integrator complex subunit 9 OS=Bos taurus GN=INTS9 PE=2 SV=1
Length = 658
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 55/74 (74%)
Query: 92 NRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTLVVPDCYTH 151
N + EPDF Y+EALAP+QPLAMK I+CPIDT LNF Q +KL++E++P +V P+ YT
Sbjct: 418 NTVIFTEPDFSYLEALAPYQPLAMKCIYCPIDTRLNFIQVSKLLKEVQPLHVVCPEQYTQ 477
Query: 152 PPPSFPQRTELVID 165
P P+ R +L++D
Sbjct: 478 PTPAQSHRMDLMVD 491
>sp|Q6DFF4|INT9_XENLA Integrator complex subunit 9 OS=Xenopus laevis GN=ints9 PE=2 SV=1
Length = 658
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 55/74 (74%)
Query: 92 NRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTLVVPDCYTH 151
N + EPDF Y++ALAP+QPLAMK ++CPIDT LNF Q KL++E++P +V P+ YT
Sbjct: 418 NTVIFTEPDFSYLDALAPYQPLAMKCVYCPIDTRLNFIQVTKLLKEVQPLHVVCPEQYTQ 477
Query: 152 PPPSFPQRTELVID 165
PP + R++L+ID
Sbjct: 478 PPATQSHRSDLMID 491
>sp|Q54SH0|INT9_DICDI Integrator complex subunit 9 homolog OS=Dictyostelium discoideum
GN=ints9 PE=3 SV=1
Length = 712
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 91 KNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTLVVPDCY 149
KN + +EPDF + + PF + PID +NFN+AN LI +L P L++P Y
Sbjct: 451 KNSILLIEPDFDFKSTVLPFSKQISRIQFLPIDPRINFNEANLLISKLSPKHLIIPRIY 509
>sp|Q0IDZ9|SECA_SYNS3 Protein translocase subunit SecA OS=Synechococcus sp. (strain
CC9311) GN=secA PE=3 SV=1
Length = 950
Score = 34.3 bits (77), Expect = 0.39, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 20 GQSKIEEVLQFCTHFDFPPSSPDLSSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79
G+ + E+++ + D PP D+S S VK VY+ + D+L G S +++A
Sbjct: 787 GERTMNEIVEAYVNPDLPPEEWDVSQLVS----KVKEFVYLLEDLQPDQLQGLSMDDLKA 842
Query: 80 IAQERLKTHH 89
QE+L+ +
Sbjct: 843 FLQEQLRNAY 852
>sp|Q6G0H0|ATPF2_BARQU ATP synthase subunit b 2 OS=Bartonella quintana (strain Toulouse)
GN=atpF2 PE=3 SV=1
Length = 164
Score = 33.1 bits (74), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 68 ELTGASYREIRAIAQE-RLKTHHF-KNRQVTLEPDFPYVEALA------PFQPLAMKSIH 119
E+ A+ RE+ A+ E R K + KNR E EA A LA+ +
Sbjct: 72 EIIAAAKREVEAVVSEARTKAEEYVKNRNKLAEQKIAQAEADAIRVVSSSAVDLAVSAAR 131
Query: 120 CPIDTSLNFNQANKLIRE 137
I+ L+ N+AN+LI+E
Sbjct: 132 VLIEQELDSNKANELIKE 149
>sp|Q3ANH2|SECA_SYNSC Protein translocase subunit SecA OS=Synechococcus sp. (strain
CC9605) GN=secA PE=3 SV=1
Length = 934
Score = 33.1 bits (74), Expect = 0.89, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 20 GQSKIEEVLQFCTHFDFPPSSPDLSSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79
G+ + E+++ + D PP DL D K VK +Y+ + T D++ G E++A
Sbjct: 777 GERTMGEIVEAYVNPDLPPEEWDL---DQLVGK-VKEFIYLLEDLTPDQVQGLGMEELKA 832
Query: 80 IAQERLK 86
QE+L+
Sbjct: 833 FLQEQLR 839
>sp|A5GI02|SECA_SYNPW Protein translocase subunit SecA OS=Synechococcus sp. (strain
WH7803) GN=secA PE=3 SV=1
Length = 955
Score = 33.1 bits (74), Expect = 0.91, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 20 GQSKIEEVLQFCTHFDFPPSSPDLSSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79
G+ + E+++ + D PP D++ S V+ VY+ D+L G S E++A
Sbjct: 789 GERTMNEIVEAYVNPDLPPEEWDVTQLVS----KVQEFVYLLDDLQADQLQGLSMDELKA 844
Query: 80 IAQERLK 86
QE+L+
Sbjct: 845 FLQEQLR 851
>sp|C5DGX3|AIM37_LACTC Altered inheritance of mitochondria protein 37, mitochondrial
OS=Lachancea thermotolerans (strain ATCC 56472 / CBS
6340 / NRRL Y-8284) GN=AIM37 PE=3 SV=1
Length = 240
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 49/114 (42%), Gaps = 21/114 (18%)
Query: 40 SPDLSSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEP 99
S L S+ S KYV +K YIYKT LD A+ E +++ Q+ + H L
Sbjct: 44 SKALDSWFSGIRKYVTHKYYIYKTE-LDTQKSAAANEWKSV-QDYVSQH-------VLTD 94
Query: 100 DFPYVEALAPFQPLAMKSI----------HCPIDTSLNFNQANKLIRELKPSTL 143
D+ E L P LA+ + + D+ LN +A L R PS L
Sbjct: 95 DYEKQELLVPSSALALGAFFTGRVLSNRRNWGFDSPLNTTKAGILTRN--PSAL 146
>sp|B6JM18|SECA_HELP2 Protein translocase subunit SecA OS=Helicobacter pylori (strain
P12) GN=secA PE=3 SV=1
Length = 865
Score = 31.2 bits (69), Expect = 3.1, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 13/83 (15%)
Query: 2 FQNGDNLDSLIASTASSNGQSKIEEVLQFCTHFDFPPSSPDLSSYDSFSWKYVKNKVYIY 61
++G++++S + + A N Q K+E + HF+ S L YD + + K+ +Y
Sbjct: 572 LKDGEHIESKLVTRAVENAQKKVENL-----HFE---SRKHLLEYDDVANEQRKS---VY 620
Query: 62 KTRTLDELTGASYREIRAIAQER 84
K R DEL ASY IA+ R
Sbjct: 621 KFR--DELLDASYDIGAKIAENR 641
>sp|A2C5Z6|SECA_PROM3 Protein translocase subunit SecA OS=Prochlorococcus marinus (strain
MIT 9303) GN=secA PE=3 SV=1
Length = 951
Score = 31.2 bits (69), Expect = 3.2, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 20 GQSKIEEVLQFCTHFDFPPSSPDLSSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79
G+ +++V++ + D PP DL S V+ VY+ + ++L G S E+++
Sbjct: 788 GERTMDDVVEAYVNPDLPPEEWDLDQLVS----KVQEFVYLLEDLKPEQLQGLSMEELKS 843
Query: 80 IAQERLK 86
QE+L+
Sbjct: 844 FLQEQLR 850
>sp|B9KFM5|SECA_CAMLR Protein translocase subunit SecA OS=Campylobacter lari (strain
RM2100 / D67 / ATCC BAA-1060) GN=secA PE=3 SV=1
Length = 863
Score = 31.2 bits (69), Expect = 3.5, Method: Composition-based stats.
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 13/107 (12%)
Query: 3 QNGDNLDSLIASTASSNGQSKIEEVLQFCTHFDFPPSSPDLSSYDSFSWKYVKNKVYIYK 62
+ G++++S I + A N Q K+E + HF+ S L YD + + K +Y Y+
Sbjct: 579 EEGEHIESRIVTRAVENAQKKVESL-----HFE---SRKHLLEYDDVANEQRKT-IYNYR 629
Query: 63 TRTLDELTGASYREIRAIAQ--ERLKTHHFKNRQVTLEPDFPYVEAL 107
LDE + ++ IA+ L + + N + LE D + E+L
Sbjct: 630 NELLDEEFDLQDKILKNIAEYSNHLVSQIYLNAE--LEDDVKHFESL 674
>sp|Q8DYE6|GLMU_STRA5 Bifunctional protein GlmU OS=Streptococcus agalactiae serotype V
(strain ATCC BAA-611 / 2603 V/R) GN=glmU PE=3 SV=1
Length = 459
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 51 WKYVKNKVYIYKTRTLDELTGASYREIRAIAQE----RLKTHHFKNRQVTLEPDFPYVE 105
+K KV YK R DE G + R A A++ R+ H N + PD Y++
Sbjct: 205 FKEAGKKVGAYKLRDFDESLGVNDRVALATAEKVMRHRIARQHMVNGVTVVNPDSAYID 263
>sp|Q8E409|GLMU_STRA3 Bifunctional protein GlmU OS=Streptococcus agalactiae serotype III
(strain NEM316) GN=glmU PE=3 SV=1
Length = 459
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 51 WKYVKNKVYIYKTRTLDELTGASYREIRAIAQE----RLKTHHFKNRQVTLEPDFPYVE 105
+K KV YK R DE G + R A A++ R+ H N + PD Y++
Sbjct: 205 FKEAGKKVGAYKLRDFDESLGVNDRVALATAEKVMRHRIARQHMVNGVTVVNPDSAYID 263
>sp|Q3JZY6|GLMU_STRA1 Bifunctional protein GlmU OS=Streptococcus agalactiae serotype Ia
(strain ATCC 27591 / A909 / CDC SS700) GN=glmU PE=3 SV=1
Length = 459
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 51 WKYVKNKVYIYKTRTLDELTGASYREIRAIAQE----RLKTHHFKNRQVTLEPDFPYVE 105
+K KV YK R DE G + R A A++ R+ H N + PD Y++
Sbjct: 205 FKEAGKKVGAYKLRDFDESLGVNDRVALATAEKVMRHRIARQHMVNGVTVVNPDSAYID 263
>sp|A9BD85|SECA_PROM4 Protein translocase subunit SecA OS=Prochlorococcus marinus (strain
MIT 9211) GN=secA PE=3 SV=1
Length = 945
Score = 30.8 bits (68), Expect = 3.9, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 20 GQSKIEEVLQFCTHFDFPPSSPDLSSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79
G+ +EE++ + D P DL+ S VK VY+ D+L G E++A
Sbjct: 786 GEKTMEEIVYAYVNPDLPSEEWDLAQLVS----KVKEFVYLLNDLKPDQLEGLDIDELKA 841
Query: 80 IAQERLK-THHFKNRQV 95
QE+L+ + K Q+
Sbjct: 842 FLQEQLRNAYDLKEAQI 858
>sp|Q7V975|SECA_PROMM Protein translocase subunit SecA OS=Prochlorococcus marinus (strain
MIT 9313) GN=secA PE=3 SV=1
Length = 948
Score = 30.8 bits (68), Expect = 4.1, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 20 GQSKIEEVLQFCTHFDFPPSSPDLSSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79
G+ ++++++ + D PP DL S V+ VY+ + ++L G S E+++
Sbjct: 788 GERTMDDIVEAYVNPDLPPEEWDLGQLVS----KVQQFVYLLEDLKPEQLQGLSMEELKS 843
Query: 80 IAQERLK 86
QE+L+
Sbjct: 844 FLQEQLR 850
>sp|A7ZD16|SECA_CAMC1 Protein translocase subunit SecA OS=Campylobacter concisus (strain
13826) GN=secA PE=3 SV=1
Length = 868
Score = 30.4 bits (67), Expect = 5.0, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 13/82 (15%)
Query: 5 GDNLDSLIASTASSNGQSKIEEVLQFCTHFDFPPSSPDLSSYDSFSWKYVKNKVYIYKTR 64
G++++S + + A N Q K+E + HF+ + L YD + + K IYK R
Sbjct: 583 GESIESRMVTRAVENAQKKVESL-----HFE---ARKHLLEYDDVANEQRKT---IYKYR 631
Query: 65 TLDELTGASYREIRAIAQERLK 86
DEL +Y IAQ R++
Sbjct: 632 --DELLDKNYDMSEKIAQNRVE 651
>sp|Q3B0N0|SECA_SYNS9 Protein translocase subunit SecA OS=Synechococcus sp. (strain
CC9902) GN=secA PE=3 SV=1
Length = 937
Score = 30.0 bits (66), Expect = 6.6, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 20 GQSKIEEVLQFCTHFDFPPSSPDLSSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79
G+ + E+++ + D PP DL D K VK +Y+ + T ++ G E++A
Sbjct: 778 GERTMNEIVEAYVNPDLPPEEWDL---DQLVGK-VKEFIYLLEDLTPAQVNGLGMDELKA 833
Query: 80 IAQERLK 86
QE+L+
Sbjct: 834 FLQEQLR 840
>sp|A2C591|SECA_PROM1 Protein translocase subunit SecA OS=Prochlorococcus marinus (strain
NATL1A) GN=secA PE=3 SV=1
Length = 944
Score = 30.0 bits (66), Expect = 6.7, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 20 GQSKIEEVLQFCTHFDFPPSSPDLSSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79
GQ +EE+++ + D PP +L++ S VK +Y+ + ++L G + E++
Sbjct: 785 GQRTMEEIVEAYVNEDLPPEEWNLTNLVS----KVKEFIYLLEDLKPEDLLGLNKNELKD 840
Query: 80 IAQERLKTHHFKNRQVTLEPDFP 102
+E+L+ + + ++ +E P
Sbjct: 841 FLKEQLR-NAYDMKEAKVEQSHP 862
>sp|Q3SWZ4|EXOS9_BOVIN Exosome complex component RRP45 OS=Bos taurus GN=EXOSC9 PE=2 SV=1
Length = 440
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 68 ELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLN 127
++ G EI + Q+ L+ ++ F +VE++A + A K PIDTS
Sbjct: 252 KIAGVKVVEITELIQKALENDQKVRKE---GGKFGFVESMANQRITAFKMEKAPIDTSDV 308
Query: 128 FNQANKLIRELKPSTLVV 145
+A ++I E +P + VV
Sbjct: 309 EEKAEEIISEAEPPSEVV 326
>sp|A8FLZ7|SECA_CAMJ8 Protein translocase subunit SecA OS=Campylobacter jejuni subsp.
jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=secA
PE=3 SV=1
Length = 862
Score = 29.6 bits (65), Expect = 8.8, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 3 QNGDNLDSLIASTASSNGQSKIEEVLQFCTHFDFPPSSPDLSSYDSFSWKYVKNKVYIYK 62
+ G++++S I + A N Q K+E + HF+ S L YD + + K +Y Y+
Sbjct: 578 EEGESIESRIVTRAVENAQKKVESL-----HFE---SRKHLLEYDDVANEQRKT-IYRYR 628
Query: 63 TRTLDE 68
LDE
Sbjct: 629 NELLDE 634
>sp|Q5HUL7|SECA_CAMJR Protein translocase subunit SecA OS=Campylobacter jejuni (strain
RM1221) GN=secA PE=3 SV=1
Length = 862
Score = 29.6 bits (65), Expect = 8.9, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 3 QNGDNLDSLIASTASSNGQSKIEEVLQFCTHFDFPPSSPDLSSYDSFSWKYVKNKVYIYK 62
+ G++++S I + A N Q K+E + HF+ S L YD + + K +Y Y+
Sbjct: 578 EEGESIESRIVTRAVENAQKKVESL-----HFE---SRKHLLEYDDVANEQRKT-IYRYR 628
Query: 63 TRTLDE 68
LDE
Sbjct: 629 NELLDE 634
>sp|Q0P9V7|SECA_CAMJE Protein translocase subunit SecA OS=Campylobacter jejuni subsp.
jejuni serotype O:2 (strain NCTC 11168) GN=secA PE=3
SV=1
Length = 862
Score = 29.6 bits (65), Expect = 8.9, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 3 QNGDNLDSLIASTASSNGQSKIEEVLQFCTHFDFPPSSPDLSSYDSFSWKYVKNKVYIYK 62
+ G++++S I + A N Q K+E + HF+ S L YD + + K +Y Y+
Sbjct: 578 EEGESIESRIVTRAVENAQKKVESL-----HFE---SRKHLLEYDDVANEQRKT-IYRYR 628
Query: 63 TRTLDE 68
LDE
Sbjct: 629 NELLDE 634
>sp|A1VZT4|SECA_CAMJJ Protein translocase subunit SecA OS=Campylobacter jejuni subsp.
jejuni serotype O:23/36 (strain 81-176) GN=secA PE=3
SV=1
Length = 862
Score = 29.6 bits (65), Expect = 9.1, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 3 QNGDNLDSLIASTASSNGQSKIEEVLQFCTHFDFPPSSPDLSSYDSFSWKYVKNKVYIYK 62
+ G++++S I + A N Q K+E + HF+ S L YD + + K +Y Y+
Sbjct: 578 EEGESIESRIVTRAVENAQKKVESL-----HFE---SRKHLLEYDDVANEQRKT-IYRYR 628
Query: 63 TRTLDE 68
LDE
Sbjct: 629 NELLDE 634
>sp|Q7UA15|SECA_SYNPX Protein translocase subunit SecA OS=Synechococcus sp. (strain
WH8102) GN=secA PE=3 SV=1
Length = 937
Score = 29.6 bits (65), Expect = 9.2, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 20 GQSKIEEVLQFCTHFDFPPSSPDLSSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79
G+ + E+++ + D PP D + + VK VY+ + T +++ G E++A
Sbjct: 777 GERTMNEIVEAYVNPDLPPEEWDTAQLVA----KVKEFVYLLEDLTPEQVQGLGMDELKA 832
Query: 80 IAQERLK-THHFKNRQV 95
QE+L+ + K QV
Sbjct: 833 FLQEQLRNAYDIKEGQV 849
>sp|A7H409|SECA_CAMJD Protein translocase subunit SecA OS=Campylobacter jejuni subsp.
doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=secA
PE=3 SV=1
Length = 862
Score = 29.6 bits (65), Expect = 9.3, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 3 QNGDNLDSLIASTASSNGQSKIEEVLQFCTHFDFPPSSPDLSSYDSFSWKYVKNKVYIYK 62
+ G++++S I + A N Q K+E + HF+ S L YD + + K +Y Y+
Sbjct: 578 EEGESIESRIVTRAVENAQKKVESL-----HFE---SRKHLLEYDDVANEQRKT-IYRYR 628
Query: 63 TRTLDE 68
LDE
Sbjct: 629 NELLDE 634
>sp|O18635|C12A2_MUSDO Cytochrome P450 CYP12A2 OS=Musca domestica GN=CYP12A2 PE=2 SV=1
Length = 537
Score = 29.6 bits (65), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 35 DFPPSSPDLSSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRAIAQERLKTHHFKNRQ 94
DF +S DL S WKY+K + R+LDE+T + + A ER++ + KNR
Sbjct: 245 DFFEASGDLEFQPSI-WKYIKTPTFKKAIRSLDEITDITKMYVDE-AFERIEAEN-KNRN 301
Query: 95 VTL-EPDFPYVEALAPFQP-----LAMKSIHCPIDTS 125
V E + +E L +AM + +DT+
Sbjct: 302 VEKPENEKSVLEKLVKIDKQIAMVMAMDMLMAGVDTT 338
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,465,095
Number of Sequences: 539616
Number of extensions: 2377783
Number of successful extensions: 5613
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 5601
Number of HSP's gapped (non-prelim): 45
length of query: 169
length of database: 191,569,459
effective HSP length: 109
effective length of query: 60
effective length of database: 132,751,315
effective search space: 7965078900
effective search space used: 7965078900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)