Query psy9122
Match_columns 169
No_of_seqs 178 out of 633
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 19:29:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9122.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9122hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1138|consensus 99.9 9.5E-28 2.1E-32 217.2 6.5 99 68-166 395-493 (653)
2 PF13358 DDE_3: DDE superfamil 99.4 2.4E-14 5.2E-19 106.2 -0.5 61 9-70 82-146 (146)
3 COG3335 Transposase and inacti 97.1 0.00049 1.1E-08 49.5 3.0 66 11-77 46-115 (132)
4 PF13333 rve_2: Integrase core 85.9 0.41 8.9E-06 30.8 1.1 30 50-79 3-33 (52)
5 PF07521 RMMBL: RNA-metabolisi 61.1 13 0.00027 23.0 3.1 32 114-145 6-37 (43)
6 PHA02517 putative transposase 55.4 24 0.00052 29.3 4.8 63 14-77 176-242 (277)
7 KOG1137|consensus 54.5 19 0.00041 34.6 4.3 63 82-146 342-419 (668)
8 PF00501 AMP-binding: AMP-bind 47.4 18 0.00038 30.9 2.8 80 62-145 20-99 (417)
9 PLN02246 4-coumarate--CoA liga 46.1 40 0.00088 30.1 5.0 82 63-149 50-132 (537)
10 cd05508 Bromo_RACK7 Bromodomai 45.8 18 0.00039 26.4 2.3 33 44-79 41-73 (99)
11 PRK08314 long-chain-fatty-acid 44.7 29 0.00063 30.9 3.8 83 63-149 35-118 (546)
12 PRK07786 long-chain-fatty-acid 43.9 31 0.00067 31.0 3.9 82 63-149 42-124 (542)
13 cd05506 Bromo_plant1 Bromodoma 43.5 21 0.00045 25.4 2.3 34 43-79 40-73 (99)
14 PF04413 Glycos_transf_N: 3-De 43.4 28 0.00062 27.9 3.3 75 64-148 29-104 (186)
15 cd04369 Bromodomain Bromodomai 42.9 22 0.00047 24.0 2.2 33 44-79 41-73 (99)
16 PRK08308 acyl-CoA synthetase; 42.8 51 0.0011 28.5 5.0 84 59-147 4-87 (414)
17 PF06049 LSPR: Coagulation Fac 42.6 12 0.00025 16.4 0.5 6 39-44 2-7 (9)
18 COG1167 ARO8 Transcriptional r 41.1 31 0.00068 31.4 3.5 89 63-154 131-241 (459)
19 cd05503 Bromo_BAZ2A_B_like Bro 40.5 25 0.00055 25.2 2.3 33 44-79 39-71 (97)
20 PRK07638 acyl-CoA synthetase; 38.8 51 0.0011 29.0 4.4 81 63-148 26-106 (487)
21 cd05505 Bromo_WSTF_like Bromod 38.7 28 0.00061 25.2 2.3 33 44-79 39-71 (97)
22 PF00439 Bromodomain: Bromodom 38.2 25 0.00055 23.7 1.9 42 36-80 22-68 (84)
23 PRK07787 acyl-CoA synthetase; 37.5 49 0.0011 29.0 4.1 79 59-147 21-100 (471)
24 cd05507 Bromo_brd8_like Bromod 37.2 29 0.00064 25.2 2.3 34 43-79 41-74 (104)
25 PF13683 rve_3: Integrase core 36.5 6.1 0.00013 26.2 -1.4 41 36-77 8-50 (67)
26 cd05510 Bromo_SPT7_like Bromod 36.5 30 0.00065 25.8 2.2 33 44-79 47-79 (112)
27 TIGR03098 ligase_PEP_1 acyl-Co 36.0 67 0.0014 28.2 4.7 83 63-149 25-107 (515)
28 COG4553 DepA Poly-beta-hydroxy 35.9 36 0.00079 30.7 3.0 83 63-153 150-240 (415)
29 PRK06087 short chain acyl-CoA 35.7 56 0.0012 29.2 4.3 83 63-149 49-131 (547)
30 cd05498 Bromo_Brdt_II_like Bro 35.7 32 0.0007 24.6 2.3 34 43-79 43-76 (102)
31 PLN03102 acyl-activating enzym 35.4 59 0.0013 29.8 4.4 81 63-147 39-119 (579)
32 COG0112 GlyA Glycine/serine hy 35.3 41 0.00088 31.0 3.3 33 115-147 139-174 (413)
33 PRK05857 acyl-CoA synthetase; 35.3 48 0.001 29.9 3.7 82 63-149 41-123 (540)
34 PF00464 SHMT: Serine hydroxym 34.5 40 0.00087 30.7 3.1 60 89-148 108-178 (399)
35 PF03184 DDE_1: DDE superfamil 34.2 46 0.00099 25.9 3.1 77 10-86 119-214 (217)
36 cd05515 Bromo_polybromo_V Brom 34.1 36 0.00079 24.8 2.3 34 43-79 44-77 (105)
37 cd05517 Bromo_polybromo_II Bro 33.3 38 0.00083 24.7 2.3 34 43-79 44-77 (103)
38 PRK07514 malonyl-CoA synthase; 33.3 50 0.0011 28.9 3.5 82 62-147 27-108 (504)
39 PRK08316 acyl-CoA synthetase; 32.9 73 0.0016 27.9 4.5 84 62-149 35-118 (523)
40 smart00297 BROMO bromo domain. 32.8 39 0.00084 23.8 2.2 34 43-79 45-78 (107)
41 cd05497 Bromo_Brdt_I_like Brom 32.7 38 0.00083 24.9 2.3 33 44-79 46-78 (107)
42 cd05500 Bromo_BDF1_2_I Bromodo 32.7 38 0.00083 24.5 2.2 33 44-79 45-77 (103)
43 PRK07445 O-succinylbenzoic aci 32.5 78 0.0017 28.1 4.6 81 65-149 21-102 (452)
44 cd05492 Bromo_ZMYND11 Bromodom 32.4 38 0.00082 25.3 2.2 34 44-80 45-78 (109)
45 cd05512 Bromo_brd1_like Bromod 32.2 40 0.00086 24.4 2.2 33 44-79 40-72 (98)
46 cd05499 Bromo_BDF1_2_II Bromod 32.2 42 0.0009 24.1 2.3 34 43-79 43-76 (102)
47 PLN02330 4-coumarate--CoA liga 31.6 56 0.0012 29.3 3.6 81 63-148 55-136 (546)
48 cd05513 Bromo_brd7_like Bromod 31.5 41 0.00089 24.4 2.2 33 44-79 40-72 (98)
49 cd05501 Bromo_SP100C_like Brom 31.5 44 0.00095 24.7 2.4 40 37-79 27-71 (102)
50 cd05511 Bromo_TFIID Bromodomai 31.4 42 0.0009 24.8 2.3 34 43-79 38-71 (112)
51 cd05509 Bromo_gcn5_like Bromod 30.9 43 0.00094 23.9 2.2 33 44-79 40-72 (101)
52 cd05516 Bromo_SNF2L2 Bromodoma 29.4 49 0.0011 24.2 2.3 34 43-79 45-78 (107)
53 PRK06187 long-chain-fatty-acid 28.9 90 0.0019 27.2 4.3 82 64-149 32-113 (521)
54 PLN02860 o-succinylbenzoate-Co 28.9 1.1E+02 0.0024 27.7 5.0 83 62-148 31-113 (563)
55 cd05495 Bromo_cbp_like Bromodo 28.8 49 0.0011 24.3 2.3 33 44-79 45-77 (108)
56 PRK06839 acyl-CoA synthetase; 28.7 96 0.0021 27.0 4.5 87 60-149 24-110 (496)
57 PRK07656 long-chain-fatty-acid 28.5 92 0.002 27.2 4.3 84 62-149 29-112 (513)
58 cd05496 Bromo_WDR9_II Bromodom 28.5 48 0.001 25.0 2.2 33 44-79 44-76 (119)
59 cd05522 Bromo_Rsc1_2_II Bromod 28.3 52 0.0011 24.0 2.3 34 43-79 45-78 (104)
60 cd05504 Bromo_Acf1_like Bromod 28.3 50 0.0011 24.6 2.2 33 44-79 51-83 (115)
61 cd05519 Bromo_SNF2 Bromodomain 27.7 55 0.0012 23.6 2.3 34 43-79 44-77 (103)
62 PF07592 DDE_Tnp_ISAZ013: Rhod 27.3 54 0.0012 29.1 2.6 42 35-76 221-262 (311)
63 PRK13382 acyl-CoA synthetase; 27.3 93 0.002 28.0 4.2 83 62-149 67-150 (537)
64 PLN02654 acetate-CoA ligase 27.1 98 0.0021 29.1 4.5 83 64-150 121-203 (666)
65 cd05524 Bromo_polybromo_I Brom 27.1 55 0.0012 24.3 2.3 34 43-79 46-79 (113)
66 TIGR01217 ac_ac_CoA_syn acetoa 26.9 1.1E+02 0.0023 28.7 4.7 82 64-149 115-196 (652)
67 PF13483 Lactamase_B_3: Beta-l 26.8 71 0.0015 24.2 3.0 31 114-144 128-160 (163)
68 PRK07798 acyl-CoA synthetase; 26.6 77 0.0017 27.8 3.5 83 61-148 26-109 (533)
69 TIGR03205 pimA dicarboxylate-- 26.6 80 0.0017 28.3 3.7 80 63-147 46-126 (541)
70 cd05518 Bromo_polybromo_IV Bro 26.6 58 0.0013 23.8 2.3 34 43-79 44-77 (103)
71 KOG4710|consensus 26.5 22 0.00047 28.7 -0.0 15 33-47 88-102 (170)
72 PRK07788 acyl-CoA synthetase; 26.4 1.2E+02 0.0026 27.2 4.8 84 62-149 73-156 (549)
73 PRK00174 acetyl-CoA synthetase 26.1 1.2E+02 0.0026 28.0 4.8 82 64-149 99-180 (637)
74 cd05520 Bromo_polybromo_III Br 26.1 61 0.0013 23.6 2.3 34 43-79 44-77 (103)
75 PRK03584 acetoacetyl-CoA synth 25.8 1.2E+02 0.0025 28.2 4.7 83 64-150 115-197 (655)
76 cd05528 Bromo_AAA Bromodomain; 25.4 60 0.0013 24.1 2.2 33 44-79 42-74 (112)
77 PRK04813 D-alanine--poly(phosp 25.0 1.4E+02 0.003 26.1 4.7 83 63-149 27-109 (503)
78 cd05525 Bromo_ASH1 Bromodomain 24.5 67 0.0014 23.6 2.3 34 43-79 46-79 (106)
79 PF10996 Beta-Casp: Beta-Casp 23.7 55 0.0012 23.6 1.7 21 82-102 99-119 (126)
80 PRK13295 cyclohexanecarboxylat 23.4 90 0.002 28.0 3.4 83 62-149 54-137 (547)
81 PTZ00237 acetyl-CoA synthetase 23.1 1.3E+02 0.0027 28.3 4.4 81 64-148 93-173 (647)
82 PRK06710 long-chain-fatty-acid 23.1 1.6E+02 0.0035 26.5 5.0 82 64-149 50-131 (563)
83 PRK09274 peptide synthase; Pro 22.7 1.5E+02 0.0032 26.5 4.6 80 63-146 41-120 (552)
84 TIGR02188 Ac_CoA_lig_AcsA acet 22.7 1.4E+02 0.0031 27.4 4.6 83 64-150 89-171 (625)
85 PRK10524 prpE propionyl-CoA sy 22.6 1.5E+02 0.0032 27.3 4.7 82 64-149 85-166 (629)
86 PRK13388 acyl-CoA synthetase; 22.5 1.4E+02 0.003 26.9 4.4 82 63-148 26-108 (540)
87 TIGR02262 benz_CoA_lig benzoat 22.3 71 0.0015 28.2 2.5 82 63-149 30-112 (508)
88 PLN03052 acetate--CoA ligase; 22.0 1.4E+02 0.003 28.8 4.5 83 64-150 209-291 (728)
89 TIGR01733 AA-adenyl-dom amino 21.9 1.9E+02 0.004 24.4 4.8 81 67-150 3-83 (408)
90 TIGR01734 D-ala-DACP-lig D-ala 21.9 1.4E+02 0.0031 26.0 4.3 83 62-149 24-107 (502)
91 PRK07470 acyl-CoA synthetase; 21.7 1.7E+02 0.0037 25.9 4.8 84 62-149 31-114 (528)
92 PRK09029 O-succinylbenzoic aci 21.5 2.1E+02 0.0044 24.9 5.2 84 62-149 27-110 (458)
93 PRK05605 long-chain-fatty-acid 21.5 1.2E+02 0.0026 27.4 3.8 82 62-147 56-137 (573)
94 PRK08315 AMP-binding domain pr 21.4 1.6E+02 0.0036 26.2 4.6 80 64-147 44-123 (559)
95 PRK08276 long-chain-fatty-acid 21.3 1.6E+02 0.0035 25.8 4.5 84 61-148 9-92 (502)
96 cd05529 Bromo_WDR9_I_like Brom 21.3 81 0.0017 23.9 2.3 33 44-79 67-99 (128)
97 PRK07059 Long-chain-fatty-acid 21.2 1.1E+02 0.0023 27.5 3.4 82 63-149 48-130 (557)
98 PRK06164 acyl-CoA synthetase; 21.2 1.1E+02 0.0023 27.3 3.4 82 63-148 35-116 (540)
99 PRK06334 long chain fatty acid 20.6 89 0.0019 28.3 2.8 78 63-148 45-123 (539)
100 PRK08008 caiC putative crotono 20.5 1.8E+02 0.0039 25.7 4.6 82 63-149 37-119 (517)
101 PRK05677 long-chain-fatty-acid 20.5 1.7E+02 0.0036 26.5 4.5 81 63-146 49-129 (562)
102 PRK12406 long-chain-fatty-acid 20.1 1.2E+02 0.0026 26.8 3.4 85 60-149 8-93 (509)
No 1
>KOG1138|consensus
Probab=99.94 E-value=9.5e-28 Score=217.21 Aligned_cols=99 Identities=40% Similarity=0.616 Sum_probs=94.1
Q ss_pred HHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcCeEEccC
Q psy9122 68 ELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTLVVPD 147 (169)
Q Consensus 68 eLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~~i~p~ 147 (169)
....+..++++..+..++||++|+|++|++||||+++++++|||||+||+++||||+||||.|+++|++++||++++||+
T Consensus 395 f~~H~SlRfgdv~h~~e~~g~sp~NsvI~tdpD~~~~~vl~PfrpLamK~i~cpidtrlnfqql~kLlkelqPk~vlcpe 474 (653)
T KOG1138|consen 395 FMGHPSLRFGDVVHFLECWGLSPKNSVIFTDPDFSYLLVLAPFRPLAMKIIYCPIDTRLNFQQLPKLLKELQPKIVLCPE 474 (653)
T ss_pred ecCCcchhhhHHHHHHHHhcCCCCCceEEeCCCCchhhhhcCCccccceeEeccccccccHHHHHHHHHHhCCCEEEChh
Confidence 34456788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCCCCCCccceeecc
Q psy9122 148 CYTHPPPSFPQRTELVIDQ 166 (169)
Q Consensus 148 ~y~~p~~~~~~~~d~~i~~ 166 (169)
.||+|++++|++++..+++
T Consensus 475 aytqp~~~ap~~~i~~~d~ 493 (653)
T KOG1138|consen 475 AYTQPIPLAPIKTISILDY 493 (653)
T ss_pred hhcCCCCccchheehhccc
Confidence 9999999999999988875
No 2
>PF13358 DDE_3: DDE superfamily endonuclease
Probab=99.41 E-value=2.4e-14 Score=106.21 Aligned_cols=61 Identities=30% Similarity=0.459 Sum_probs=55.1
Q ss_pred hhhhhhcccccchhhhHHHHhc--CC--cccCCCCCCCCCccccccccccccccccCCCCCHHHHH
Q psy9122 9 DSLIASTASSNGQSKIEEVLQF--CT--HFDFPPSSPDLSSYDSFSWKYVKNKVYIYKTRTLDELT 70 (169)
Q Consensus 9 ~~~~~~~a~~~~~~~~~~wi~r--~~--~~~WPp~SPDLnPidf~lW~~LK~~vy~~~~~~ieeLk 70 (169)
-.++.++|++|+.+.+.+|+.. .+ .+.|||||||||||| .+|+.||+.+.++.+.|+++||
T Consensus 82 ~~li~DNa~~H~~~~~~~~l~~~~~~~~~~~~P~~sPdLNpiE-~~w~~lk~~~~~~~~~~~~~Lk 146 (146)
T PF13358_consen 82 IVLIMDNASIHKSKKVQEWLEEHERGIELLFLPPYSPDLNPIE-NVWGYLKRRIRRRRFSSIEELK 146 (146)
T ss_pred EEEecccccccccccccceeeccccccccccccCcCCccCHHH-HHHHHHHHHHHhcCCCChHHhC
Confidence 3478899999999999999987 54 578999999999999 5999999999988999999985
No 3
>COG3335 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=97.07 E-value=0.00049 Score=49.49 Aligned_cols=66 Identities=21% Similarity=0.181 Sum_probs=45.2
Q ss_pred hhhhc-ccccchhhhHHHHhcCCc--ccCCCCCCCCCcccccccccccc-ccccCCCCCHHHHHHHHHHHH
Q psy9122 11 LIAST-ASSNGQSKIEEVLQFCTH--FDFPPSSPDLSSYDSFSWKYVKN-KVYIYKTRTLDELTGASYREI 77 (169)
Q Consensus 11 ~~~~~-a~~~~~~~~~~wi~r~~~--~~WPp~SPDLnPidf~lW~~LK~-~vy~~~~~~ieeLk~aI~raw 77 (169)
.+-++ |+.|....+.+.+++.+. +.=|++|||+||+|+ +|..+|. .++.......+.+++.+....
T Consensus 46 ~~~~~~~~~~~~~~i~~~~~~~~~~~~flp~y~p~~n~ie~-~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 115 (132)
T COG3335 46 LILDNVASFHRKKALKEDAEENGIHLLFLPPYSPDLNPIEY-AWKKLKIRRLKKILYLYEELIKDLLSLLG 115 (132)
T ss_pred EEecCCcccchHHHHHHHHHhCCccEEEcCCCCCCccHHHH-HHHHHHHHhhcccccchHHHHHHHHHHHH
Confidence 34444 788887777777777653 467999999999995 9999994 555555555444555444443
No 4
>PF13333 rve_2: Integrase core domain
Probab=85.86 E-value=0.41 Score=30.83 Aligned_cols=30 Identities=27% Similarity=0.226 Sum_probs=25.4
Q ss_pred ccccccccc-ccCCCCCHHHHHHHHHHHHhh
Q psy9122 50 SWKYVKNKV-YIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 50 lW~~LK~~v-y~~~~~~ieeLk~aI~raw~s 79 (169)
+||.||... ++....|.+++++.|.+.+.-
T Consensus 3 ff~~lK~E~~~~~~~~t~eel~~~I~~YI~~ 33 (52)
T PF13333_consen 3 FFGTLKTEMLYRQKFKTREELKQAIDEYIDY 33 (52)
T ss_pred chHhhcchhcCCcccchHHHHHHHHHHHHHH
Confidence 699999875 777899999999999887653
No 5
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=61.10 E-value=13 Score=23.02 Aligned_cols=32 Identities=9% Similarity=0.229 Sum_probs=22.6
Q ss_pred ceeeeeeccccCcChhHHHHhhhhcCcCeEEc
Q psy9122 114 AMKSIHCPIDTSLNFNQANKLIRELKPSTLVV 145 (169)
Q Consensus 114 ~~~~~~~pid~r~~~~~~~~li~~l~P~~~i~ 145 (169)
.|++..+..----|..++.++|+.++|+.+|+
T Consensus 6 ~a~v~~~~fSgHad~~~L~~~i~~~~p~~vil 37 (43)
T PF07521_consen 6 RARVEQIDFSGHADREELLEFIEQLNPRKVIL 37 (43)
T ss_dssp -SEEEESGCSSS-BHHHHHHHHHHHCSSEEEE
T ss_pred EEEEEEEeecCCCCHHHHHHHHHhcCCCEEEE
Confidence 34444444333389999999999999998886
No 6
>PHA02517 putative transposase OrfB; Reviewed
Probab=55.44 E-value=24 Score=29.28 Aligned_cols=63 Identities=10% Similarity=-0.117 Sum_probs=43.7
Q ss_pred hcccccchhhhHHHHhcCCcc--cCCCCCCCCC-cccccccccccccc-ccCCCCCHHHHHHHHHHHH
Q psy9122 14 STASSNGQSKIEEVLQFCTHF--DFPPSSPDLS-SYDSFSWKYVKNKV-YIYKTRTLDELTGASYREI 77 (169)
Q Consensus 14 ~~a~~~~~~~~~~wi~r~~~~--~WPp~SPDLn-Pidf~lW~~LK~~v-y~~~~~~ieeLk~aI~raw 77 (169)
+..+.-++...++++...|.. .=++++|-.| ++| .+|+.||+.+ +...+.+.+++.+.+.++.
T Consensus 176 D~G~~y~s~~~~~~~~~~gi~~~~~~~~~P~~N~~iE-r~~~tlK~e~~~~~~~~s~~~l~~~~~~~i 242 (277)
T PHA02517 176 DKGSQYVSLAYTQRLKEAGIRASTGSRGDSYDNAPAE-SINGLYKAEVIHRVSWKNREEVELATLEWV 242 (277)
T ss_pred ccccccchHHHHHHHHHcCcccccCCCCCCCCccccc-hhHhhhhhhhhcCccCCCHHHHHHHHHHHH
Confidence 333333455677888887742 2345555555 999 5899999886 4556889999998888664
No 7
>KOG1137|consensus
Probab=54.47 E-value=19 Score=34.61 Aligned_cols=63 Identities=19% Similarity=0.250 Sum_probs=48.3
Q ss_pred HHHHhhccCCceeEEeCCCCCcccccC---------------CCcccceeeeeeccccCcChhHHHHhhhhcCcCeEEcc
Q psy9122 82 QERLKTHHFKNRQVTLEPDFPYVEALA---------------PFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTLVVP 146 (169)
Q Consensus 82 ~e~l~g~~~~N~ii~~ep~~~~~~~~~---------------Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~~i~p 146 (169)
..+.|-..++|++|+ |.|..++.++ +=-|+.|.+.++--.--.||.|-.+.|++++|.+||+-
T Consensus 342 lfe~wcsD~kN~vli--pGy~Vegtlak~il~eP~eI~a~~G~klp~~m~V~~isFaAhvdy~q~s~fi~~i~~~~lilV 419 (668)
T KOG1137|consen 342 LFERWCSDSKNAVLI--PGYCVEGTLAKDILSEPKEIMAMNGRKLPLRMQVEYISFAAHVDYLQNSEFIADITPPHLILV 419 (668)
T ss_pred HHHHhCCCCCCcEEe--ccceechhHHHHHhcCchhhhcccCCcccccceEEEEEeeechhhhhhHHHHHHhCCCeEEEE
Confidence 347888999999987 5556655543 22345666777776667999999999999999999987
No 8
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]. This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....
Probab=47.40 E-value=18 Score=30.88 Aligned_cols=80 Identities=19% Similarity=0.248 Sum_probs=58.2
Q ss_pred CCCCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcC
Q psy9122 62 KTRTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPS 141 (169)
Q Consensus 62 ~~~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~ 141 (169)
..-|-.+|.+++.+.-..+.. .|-.+.+.|.+.-++ ..+-+.+=|.-+.+.+.++||++++.-.++..++...+|+
T Consensus 20 ~~~Ty~~l~~~v~~la~~L~~---~g~~~~~~V~i~~~n-~~~~~~~~~A~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~ 95 (417)
T PF00501_consen 20 RSLTYKQLYERVRKLAAALRK---LGVKKGDRVAILLPN-SIEFVVAFLACLRAGAIPVPLDPSLSEDELRHILRQSGPK 95 (417)
T ss_dssp EEEEHHHHHHHHHHHHHHHHH---TTSSTTSEEEEEESS-SHHHHHHHHHHHHTT-EEEEEETTSSHHHHHHHHHHHTES
T ss_pred EEEEHHHHHHHHHHHhhHHHH---hCCCccccccccCCc-cceeeeeeccccccccccccccccccccccccccccccee
Confidence 344678888888877766652 355555666666553 2233334456668899999999999999999999999999
Q ss_pred eEEc
Q psy9122 142 TLVV 145 (169)
Q Consensus 142 ~~i~ 145 (169)
.+|+
T Consensus 96 ~ii~ 99 (417)
T PF00501_consen 96 VIIT 99 (417)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9997
No 9
>PLN02246 4-coumarate--CoA ligase
Probab=46.07 E-value=40 Score=30.14 Aligned_cols=82 Identities=11% Similarity=0.040 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHHHhhhhHHHHhhccCCceeEE-eCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcC
Q psy9122 63 TRTLDELTGASYREIRAIAQERLKTHHFKNRQVT-LEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPS 141 (169)
Q Consensus 63 ~~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~-~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~ 141 (169)
.-|-.+|.+++.+....+.. .|-.+..+|.+ .+..+. -..+=|.-+..-+.++|+|++..-.++..++.+.+|+
T Consensus 50 ~~ty~el~~~~~~la~~L~~---~g~~~gd~V~i~~~~~~~--~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~ 124 (537)
T PLN02246 50 VYTYADVELLSRRVAAGLHK---LGIRQGDVVMLLLPNCPE--FVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAK 124 (537)
T ss_pred eeeHHHHHHHHHHHHHHHHH---hCCCCCCEEEEECCCChH--HHHHHHHHHHcCEEEecCCCCCCHHHHHHHHHhcCCc
Confidence 34667787777666555542 33334444433 344333 3333466678899999999999999999999999999
Q ss_pred eEEccCCC
Q psy9122 142 TLVVPDCY 149 (169)
Q Consensus 142 ~~i~p~~y 149 (169)
.+|+...+
T Consensus 125 ~li~~~~~ 132 (537)
T PLN02246 125 LIITQSCY 132 (537)
T ss_pred EEEEccch
Confidence 99987654
No 10
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=45.79 E-value=18 Score=26.37 Aligned_cols=33 Identities=9% Similarity=0.051 Sum_probs=28.6
Q ss_pred CccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 44 SSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 44 nPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
+|+| ++.+++++..+...+++++.+.+.-.|.+
T Consensus 41 ~PmD---L~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N 73 (99)
T cd05508 41 KPMD---LSTLEKNVRKKAYGSTDAFLADAKWILHN 73 (99)
T ss_pred CCCC---HHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 5888 58999999999999999999988887754
No 11
>PRK08314 long-chain-fatty-acid--CoA ligase; Validated
Probab=44.72 E-value=29 Score=30.95 Aligned_cols=83 Identities=12% Similarity=0.090 Sum_probs=56.3
Q ss_pred CCCHHHHHHHHHHHHhhhhHHHHhhccCCceeEE-eCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcC
Q psy9122 63 TRTLDELTGASYREIRAIAQERLKTHHFKNRQVT-LEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPS 141 (169)
Q Consensus 63 ~~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~-~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~ 141 (169)
.-|-.+|.+++.+.-..+... .|-.+..+|.+ .+.+. +-..+=+.-+.+.+.++|+|+++...++..++.+.+++
T Consensus 35 ~~Ty~~l~~~v~~~a~~L~~~--~g~~~g~~V~i~~~~~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~ 110 (546)
T PRK08314 35 AISYRELLEEAERLAGYLQQE--CGVRKGDRVLLYMQNSP--QFVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGAR 110 (546)
T ss_pred eecHHHHHHHHHHHHHHHHHh--hCCCCCCEEEEECCCCh--HHHHHHHHHHHcCcEEeecCcCcCHHHHHHHHHhCCCe
Confidence 346778887777666555422 13333344443 34333 22223455568899999999999999999999999999
Q ss_pred eEEccCCC
Q psy9122 142 TLVVPDCY 149 (169)
Q Consensus 142 ~~i~p~~y 149 (169)
.+|+...+
T Consensus 111 ~ii~~~~~ 118 (546)
T PRK08314 111 VAIVGSEL 118 (546)
T ss_pred EEEEccch
Confidence 99986654
No 12
>PRK07786 long-chain-fatty-acid--CoA ligase; Validated
Probab=43.88 E-value=31 Score=30.98 Aligned_cols=82 Identities=16% Similarity=0.180 Sum_probs=57.8
Q ss_pred CCCHHHHHHHHHHHHhhhhHHHHhhccC-CceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcC
Q psy9122 63 TRTLDELTGASYREIRAIAQERLKTHHF-KNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPS 141 (169)
Q Consensus 63 ~~~ieeLk~aI~raw~sIs~e~l~g~~~-~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~ 141 (169)
.-|-.+|.+.+.+....+... |-.+ .+..|+.+.....-. +=|.-+.+-+..+|+++++.-.++..++++.+|+
T Consensus 42 ~~ty~~l~~~~~~~a~~L~~~---g~~~g~~V~i~~~~~~~~~~--~~~a~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~ 116 (542)
T PRK07786 42 TTTWRELDDRVAALAGALSRR---GVGFGDRVLILMLNRTEFVE--SVLAANMLGAIAVPVNFRLTPPEIAFLVSDCGAH 116 (542)
T ss_pred cccHHHHHHHHHHHHHHHHHc---CCCCCCEEEEECCCCHHHHH--HHHHHHHcCeEEEEcCccCCHHHHHHHHHhCCCc
Confidence 456778887777666655532 2222 345566666444333 3455568889999999999999999999999999
Q ss_pred eEEccCCC
Q psy9122 142 TLVVPDCY 149 (169)
Q Consensus 142 ~~i~p~~y 149 (169)
.+++-..+
T Consensus 117 ~ii~~~~~ 124 (542)
T PRK07786 117 VVVTEAAL 124 (542)
T ss_pred EEEEccch
Confidence 99886543
No 13
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=43.55 E-value=21 Score=25.44 Aligned_cols=34 Identities=15% Similarity=0.053 Sum_probs=29.0
Q ss_pred CCccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 43 LSSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 43 LnPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
-+|+| |+.+++++..+...+.+++.+-+...|.+
T Consensus 40 ~~P~d---l~tI~~kL~~~~Y~s~~ef~~D~~li~~N 73 (99)
T cd05506 40 KKPMD---LGTVKKKLEKGEYSSPEEFAADVRLTFAN 73 (99)
T ss_pred cCCCC---HHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 46888 58999999999999999999988877754
No 14
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=43.41 E-value=28 Score=27.91 Aligned_cols=75 Identities=15% Similarity=0.130 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCccc-ccCCCcccceeeeeeccccCcChhHHHHhhhhcCcCe
Q psy9122 64 RTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVE-ALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPST 142 (169)
Q Consensus 64 ~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~-~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~ 142 (169)
.|+.|+....-= .+.+..+.|.-.|++|.-.-.-.+ +..-|.+ ...++|.|+|. ...+.+.++.++|+.
T Consensus 29 ~SvGE~~a~~~L------i~~l~~~~p~~~illT~~T~tg~~~~~~~~~~-~v~~~~~P~D~---~~~~~rfl~~~~P~~ 98 (186)
T PF04413_consen 29 ASVGEVNAARPL------IKRLRKQRPDLRILLTTTTPTGREMARKLLPD-RVDVQYLPLDF---PWAVRRFLDHWRPDL 98 (186)
T ss_dssp SSHHHHHHHHHH------HHHHTT---TS-EEEEES-CCHHHHHHGG-GG-G-SEEE---SS---HHHHHHHHHHH--SE
T ss_pred CCHHHHHHHHHH------HHHHHHhCCCCeEEEEecCCchHHHHHHhCCC-CeEEEEeCccC---HHHHHHHHHHhCCCE
Confidence 466666653221 124555666677777765444333 3233333 67799999997 566788999999999
Q ss_pred EEccCC
Q psy9122 143 LVVPDC 148 (169)
Q Consensus 143 ~i~p~~ 148 (169)
+|+=|.
T Consensus 99 ~i~~Et 104 (186)
T PF04413_consen 99 LIWVET 104 (186)
T ss_dssp EEEES-
T ss_pred EEEEcc
Confidence 998764
No 15
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=42.94 E-value=22 Score=24.01 Aligned_cols=33 Identities=15% Similarity=0.156 Sum_probs=28.0
Q ss_pred CccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 44 SSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 44 nPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
+|++ ++.+++++..+...+.+++.+.+...|.+
T Consensus 41 ~P~~---l~~I~~kl~~~~Y~s~~~f~~D~~li~~N 73 (99)
T cd04369 41 NPMD---LSTIKKKLKNGEYKSLEEFEADVRLIFSN 73 (99)
T ss_pred Cccc---HHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 5777 48899999999999999999988888754
No 16
>PRK08308 acyl-CoA synthetase; Validated
Probab=42.82 E-value=51 Score=28.48 Aligned_cols=84 Identities=12% Similarity=-0.026 Sum_probs=57.5
Q ss_pred ccCCCCCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhc
Q psy9122 59 YIYKTRTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIREL 138 (169)
Q Consensus 59 y~~~~~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l 138 (169)
+....-|-.||.+++.+.-..+. .|..+...|.+.-++ +.+-..+=|.-+.....++|||++..-..+..++.+.
T Consensus 4 ~~~~~~ty~el~~~~~~~a~~l~----~~~~~g~~V~i~~~~-~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~ 78 (414)
T PRK08308 4 VNDEEYSKSDFDLRLQRYEEMEQ----FQEAAGNRFAVCLKD-PFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRA 78 (414)
T ss_pred ecCceecHHHHHHHHHHHHHHHH----cCCCCCCEEEEECCC-ChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhC
Confidence 34445677888888777655442 333344555444332 2222233455668899999999999999999999999
Q ss_pred CcCeEEccC
Q psy9122 139 KPSTLVVPD 147 (169)
Q Consensus 139 ~P~~~i~p~ 147 (169)
+++.+++-.
T Consensus 79 ~~~~~i~~~ 87 (414)
T PRK08308 79 GCHGLLYGE 87 (414)
T ss_pred CCCEEEecC
Confidence 999999743
No 17
>PF06049 LSPR: Coagulation Factor V LSPD Repeat; InterPro: IPR009271 The name LSPD derives from the conserved residues in the middle of the repeat. These repeats are found in coagulation factor V and occur in the B domain, which is cleaved prior to activation of the protein. It has been suggested that domain B bring domains A and C together for activation []. Coagulation factor V is a central regulator of hemostasis and serves as a critical cofactor for the prothrombinase activity of factor Xa that results in the activation of prothrombin to thrombin.; GO: 0007596 blood coagulation
Probab=42.58 E-value=12 Score=16.38 Aligned_cols=6 Identities=83% Similarity=1.032 Sum_probs=4.5
Q ss_pred CCCCCC
Q psy9122 39 SSPDLS 44 (169)
Q Consensus 39 ~SPDLn 44 (169)
-||||+
T Consensus 2 lsPDl~ 7 (9)
T PF06049_consen 2 LSPDLS 7 (9)
T ss_pred cCcccC
Confidence 488886
No 18
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=41.14 E-value=31 Score=31.39 Aligned_cols=89 Identities=24% Similarity=0.381 Sum_probs=68.1
Q ss_pred CCCHHHHHHHHHHHHh---hhhHH------------------HHhhccCCceeEEeCCCCCcccccCCCcccceeeeeec
Q psy9122 63 TRTLDELTGASYREIR---AIAQE------------------RLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCP 121 (169)
Q Consensus 63 ~~~ieeLk~aI~raw~---sIs~e------------------~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~p 121 (169)
..-..+|++.+.+.+. .+... .+- -+|..+|++-+|.|. .++.=|+-+-++++-+|
T Consensus 131 ~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al~l~~~~l-~~pGd~v~vE~PtY~--~~~~~~~~~g~~~~~vp 207 (459)
T COG1167 131 TAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQALDLLLRLL-LDPGDTVLVEDPTYP--GALQALEALGARVIPVP 207 (459)
T ss_pred CCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHHHHHHHHHHh-CCCCCEEEEcCCCcH--HHHHHHHHcCCcEEecC
Confidence 3667889988887776 12111 111 236688999899554 55556889999999999
Q ss_pred cccC-cChhHHHHhhhhcCcCeEEccCCCcCCCC
Q psy9122 122 IDTS-LNFNQANKLIRELKPSTLVVPDCYTHPPP 154 (169)
Q Consensus 122 id~r-~~~~~~~~li~~l~P~~~i~p~~y~~p~~ 154 (169)
+|-. ++...+...++..+|+.+++-..+.+|.-
T Consensus 208 ~d~~G~~~e~le~~~~~~~~k~~y~~P~~qNPtG 241 (459)
T COG1167 208 VDEDGIDPEALEEALAQWKPKAVYVTPTFQNPTG 241 (459)
T ss_pred CCCCCCCHHHHHHHHhhcCCcEEEECCCCCCCCC
Confidence 9977 99999999999999999999888887653
No 19
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=40.53 E-value=25 Score=25.17 Aligned_cols=33 Identities=15% Similarity=0.205 Sum_probs=28.1
Q ss_pred CccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 44 SSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 44 nPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
+|+| ++.+++++..+...|.+++.+.+...|.+
T Consensus 39 ~Pmd---L~tI~~kl~~~~Y~s~~ef~~D~~li~~N 71 (97)
T cd05503 39 KPMD---FSTIREKLESGQYKTLEEFAEDVRLVFDN 71 (97)
T ss_pred CCCC---HHHHHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 4788 48899999999999999999988887754
No 20
>PRK07638 acyl-CoA synthetase; Validated
Probab=38.83 E-value=51 Score=28.97 Aligned_cols=81 Identities=9% Similarity=0.077 Sum_probs=55.5
Q ss_pred CCCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcCe
Q psy9122 63 TRTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPST 142 (169)
Q Consensus 63 ~~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~ 142 (169)
.-|-.+|.+++.+.-..+... |.....-.|+.....++-. +=|.-+..-+.++||++.++-.++..++++.+|+.
T Consensus 26 ~~Ty~~l~~~~~~~a~~L~~~---~~~~~~v~i~~~~~~~~~~--~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~ 100 (487)
T PRK07638 26 VLTYKDWFESVCKVANWLNEK---ESKNKTIAILLENRIEFLQ--LFAGAAMAGWTCVPLDIKWKQDELKERLAISNADM 100 (487)
T ss_pred EeeHHHHHHHHHHHHHHHHHh---CCCCCEEEEEcCCCHHHHH--HHHHHHHcCeEEEecCccCCHHHHHHHHHhCCCCE
Confidence 346677877777665555432 2222233344444333222 34566788999999999999999999999999999
Q ss_pred EEccCC
Q psy9122 143 LVVPDC 148 (169)
Q Consensus 143 ~i~p~~ 148 (169)
+|+...
T Consensus 101 vi~~~~ 106 (487)
T PRK07638 101 IVTERY 106 (487)
T ss_pred EEEecc
Confidence 988763
No 21
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=38.71 E-value=28 Score=25.19 Aligned_cols=33 Identities=9% Similarity=0.026 Sum_probs=28.2
Q ss_pred CccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 44 SSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 44 nPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
+|+|+ +.+++++.++...|.+++.+-+.-.|.+
T Consensus 39 ~PmDL---~tI~~kl~~~~Y~s~~ef~~D~~li~~N 71 (97)
T cd05505 39 NPMDL---QTMQTKCSCGSYSSVQEFLDDMKLVFSN 71 (97)
T ss_pred CcCCH---HHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 58885 7889999999999999999988887764
No 22
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=38.16 E-value=25 Score=23.66 Aligned_cols=42 Identities=17% Similarity=0.214 Sum_probs=32.3
Q ss_pred CCCCCCC-----CCccccccccccccccccCCCCCHHHHHHHHHHHHhhh
Q psy9122 36 FPPSSPD-----LSSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRAI 80 (169)
Q Consensus 36 WPp~SPD-----LnPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~sI 80 (169)
.+...|| -+|++ ++.+++++..+...+++++.+-+...|.+-
T Consensus 22 ~~~~~p~y~~~i~~P~d---L~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na 68 (84)
T PF00439_consen 22 DPKEYPDYYEIIKNPMD---LSTIRKKLENGKYKSIEEFEADVRLIFQNA 68 (84)
T ss_dssp HTTTSTTHHHHSSSS-----HHHHHHHHHTTSSSSHHHHHHHHHHHHHHH
T ss_pred ChhhCCCHHHHHhhccc---hhhhhHHhhccchhhHHHHHHHHHHHHHHH
Confidence 4555666 46888 589999999999999999999998888653
No 23
>PRK07787 acyl-CoA synthetase; Validated
Probab=37.49 E-value=49 Score=29.04 Aligned_cols=79 Identities=15% Similarity=0.159 Sum_probs=55.2
Q ss_pred ccCCCCCHHHHHHHHHHHHhhhhHHHHhhccCCcee-EEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhh
Q psy9122 59 YIYKTRTLDELTGASYREIRAIAQERLKTHHFKNRQ-VTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRE 137 (169)
Q Consensus 59 y~~~~~~ieeLk~aI~raw~sIs~e~l~g~~~~N~i-i~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~ 137 (169)
+..+.-|-.+|.+++.+.-..+. + ..+| ++.+..+..-- +=|.-+...+.++|+|+++.-.++..++++
T Consensus 21 ~~~~~~Ty~el~~~~~~~a~~L~-----~---~~~V~l~~~~~~~~~~--~~la~~~~G~~~v~l~~~~~~~~l~~~l~~ 90 (471)
T PRK07787 21 IGGRVLSRSDLAGAATAVAERVA-----G---ARRVAVLATPTLATVL--AVVGALIAGVPVVPVPPDSGVAERRHILAD 90 (471)
T ss_pred eCCcEEEHHHHHHHHHHHHHHhc-----c---CCEEEEECCCCHHHHH--HHHHHHhcCcEEeecCCCCChHHHHHHHHh
Confidence 34455677888887776655543 1 1344 34344332222 335667888999999999999999999999
Q ss_pred cCcCeEEccC
Q psy9122 138 LKPSTLVVPD 147 (169)
Q Consensus 138 l~P~~~i~p~ 147 (169)
.+|+.+++-.
T Consensus 91 ~~~~~il~~~ 100 (471)
T PRK07787 91 SGAQAWLGPA 100 (471)
T ss_pred cCCCEEEecC
Confidence 9999999854
No 24
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=37.20 E-value=29 Score=25.23 Aligned_cols=34 Identities=12% Similarity=0.092 Sum_probs=28.9
Q ss_pred CCccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 43 LSSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 43 LnPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
-+|+| ++.+++++..+...+.+++.+-+.-.|.+
T Consensus 41 k~PmD---L~tI~~kl~~~~Y~s~~ef~~D~~li~~N 74 (104)
T cd05507 41 YRPMD---LSTIKKNIENGTIRSTAEFQRDVLLMFQN 74 (104)
T ss_pred CCCcC---HHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 35788 48899999999999999999988888765
No 25
>PF13683 rve_3: Integrase core domain
Probab=36.55 E-value=6.1 Score=26.17 Aligned_cols=41 Identities=22% Similarity=0.185 Sum_probs=31.1
Q ss_pred CCCCCCCCCc-ccccccccccccc-ccCCCCCHHHHHHHHHHHH
Q psy9122 36 FPPSSPDLSS-YDSFSWKYVKNKV-YIYKTRTLDELTGASYREI 77 (169)
Q Consensus 36 WPp~SPDLnP-idf~lW~~LK~~v-y~~~~~~ieeLk~aI~raw 77 (169)
=++++|-.|. +| .+|+.+|..+ +...+.+.++++..+.+..
T Consensus 8 ~~~~~p~~N~~~E-r~~~tlK~e~~~~~~~~s~~~~~~~v~~~~ 50 (67)
T PF13683_consen 8 SRPGSPQDNGKVE-RFNRTLKREFLYRHPFTSLEELRKQVDEWI 50 (67)
T ss_pred CCCCCccccccee-eehhhhccchhcccceecccccccccceEE
Confidence 3678888885 77 5899999876 4556789999988776554
No 26
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=36.49 E-value=30 Score=25.76 Aligned_cols=33 Identities=9% Similarity=0.010 Sum_probs=28.1
Q ss_pred CccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 44 SSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 44 nPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
+|+| ++.+++++..+...+.+++.+.+.-.|.+
T Consensus 47 ~Pmd---L~tI~~kl~~~~Y~s~~ef~~D~~Li~~N 79 (112)
T cd05510 47 KPMD---LGTMLKKLKNLQYKSKAEFVDDLNLIWKN 79 (112)
T ss_pred CccC---HHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 5777 48899999989999999999988877764
No 27
>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated. This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.
Probab=35.98 E-value=67 Score=28.20 Aligned_cols=83 Identities=14% Similarity=0.083 Sum_probs=59.2
Q ss_pred CCCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcCe
Q psy9122 63 TRTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPST 142 (169)
Q Consensus 63 ~~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~ 142 (169)
.-+-.+|.+++.+.-..+.. .|-.+...|.+.=++ ...-.++=|.-+.+.+..+|+++.+.-.++..+++..+++.
T Consensus 25 ~~ty~~l~~~v~~~a~~l~~---~g~~~~~~V~i~~~n-~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ 100 (515)
T TIGR03098 25 TLTYAALSERVLALASGLRG---LGLARGERVAIYLDK-RLETVTAMFGAALAGGVFVPINPLLKAEQVAHILADCNVRL 100 (515)
T ss_pred eeeHHHHHHHHHHHHHHHHH---cCCCCCCEEEEEcCC-CHHHHHHHHHHHhcCEEEEeCCCCCCHHHHHHHHHcCCCeE
Confidence 45777888877777666542 244444455444332 34444445666789999999999999999999999999999
Q ss_pred EEccCCC
Q psy9122 143 LVVPDCY 149 (169)
Q Consensus 143 ~i~p~~y 149 (169)
+|+...+
T Consensus 101 ~i~~~~~ 107 (515)
T TIGR03098 101 LVTSSER 107 (515)
T ss_pred EEEccch
Confidence 9986543
No 28
>COG4553 DepA Poly-beta-hydroxyalkanoate depolymerase [Lipid metabolism]
Probab=35.93 E-value=36 Score=30.67 Aligned_cols=83 Identities=22% Similarity=0.255 Sum_probs=58.1
Q ss_pred CCCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCccccc-------CCCcccceeeeeeccccCcChhHHHHhh
Q psy9122 63 TRTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEAL-------APFQPLAMKSIHCPIDTSLNFNQANKLI 135 (169)
Q Consensus 63 ~~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~-------~Pf~~l~~~~~~~pid~r~~~~~~~~li 135 (169)
.-+.++-.+-+.+.++ ..|.+ -+.+-.-.|..+.+.+. .|+.|.+|...--|||+|.|-..+|.|-
T Consensus 150 ~FdldDYIdyvie~~~------~~Gp~-~hv~aVCQP~vPvLAAisLM~~~~~p~~PssMtlmGgPIDaR~nPTavN~lA 222 (415)
T COG4553 150 HFDLDDYIDYVIEMIN------FLGPD-AHVMAVCQPTVPVLAAISLMEEDGDPNVPSSMTLMGGPIDARKNPTAVNELA 222 (415)
T ss_pred CccHHHHHHHHHHHHH------HhCCC-CcEEEEecCCchHHHHHHHHHhcCCCCCCceeeeecCccccccCcHHHhHhh
Confidence 3455555555555433 44555 68888999999987655 5999999999999999999999998764
Q ss_pred hhcCcCeEEcc-CCCcCCC
Q psy9122 136 RELKPSTLVVP-DCYTHPP 153 (169)
Q Consensus 136 ~~l~P~~~i~p-~~y~~p~ 153 (169)
+-||-.-++- ..|+.||
T Consensus 223 -~~k~~~WF~~n~vm~vP~ 240 (415)
T COG4553 223 -TEKSIEWFRDNVVMQVPP 240 (415)
T ss_pred -hccchHHHHhCeeeecCC
Confidence 4566544444 2344444
No 29
>PRK06087 short chain acyl-CoA synthetase; Reviewed
Probab=35.75 E-value=56 Score=29.24 Aligned_cols=83 Identities=13% Similarity=0.122 Sum_probs=59.2
Q ss_pred CCCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcCe
Q psy9122 63 TRTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPST 142 (169)
Q Consensus 63 ~~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~ 142 (169)
.-|-.+|.+++.+.-..+.. .|-.+..+|.+.-|+- .+-+++=+.-+.+-+..+|++++++-.++..+|++.+|+.
T Consensus 49 ~~Ty~~l~~~v~~la~~l~~---~G~~~gd~V~i~~~n~-~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 124 (547)
T PRK06087 49 SYTYSALDHAASRLANWLLA---KGIEPGDRVAFQLPGW-CEFTIIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKM 124 (547)
T ss_pred EEEHHHHHHHHHHHHHHHHH---cCCCCCCEEEEECCCC-HHHHHHHHHHHHcCcEEeccchhcCHHHHHHHHHhcCCeE
Confidence 34777887777666555542 3445556666655432 2223334556788999999999999999999999999999
Q ss_pred EEccCCC
Q psy9122 143 LVVPDCY 149 (169)
Q Consensus 143 ~i~p~~y 149 (169)
++++..+
T Consensus 125 l~~~~~~ 131 (547)
T PRK06087 125 FFAPTLF 131 (547)
T ss_pred EEEeccc
Confidence 9998755
No 30
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=35.69 E-value=32 Score=24.59 Aligned_cols=34 Identities=12% Similarity=0.033 Sum_probs=29.1
Q ss_pred CCccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 43 LSSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 43 LnPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
-+|+| ++.+++++..+...+.+++.+.+...|.+
T Consensus 43 ~~Pmd---l~~I~~kl~~~~Y~s~~ef~~D~~li~~N 76 (102)
T cd05498 43 KHPMD---LSTIKKKLDNREYADAQEFAADVRLMFSN 76 (102)
T ss_pred cCCCc---HHHHHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 46888 48999999999999999999988888764
No 31
>PLN03102 acyl-activating enzyme; Provisional
Probab=35.43 E-value=59 Score=29.75 Aligned_cols=81 Identities=17% Similarity=0.160 Sum_probs=57.4
Q ss_pred CCCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcCe
Q psy9122 63 TRTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPST 142 (169)
Q Consensus 63 ~~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~ 142 (169)
.-|-.||.+++.+.-..+.. .|-.+..+|.+.=|+ ..+-..+=|.-+.+-+.++||+++++-.++..+++..+|+.
T Consensus 39 ~~Ty~eL~~~~~~~a~~L~~---~Gl~~gd~Vai~~~n-~~e~~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ 114 (579)
T PLN03102 39 RFTWPQTYDRCCRLAASLIS---LNITKNDVVSVLAPN-TPAMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKI 114 (579)
T ss_pred EEEHHHHHHHHHHHHHHHHH---cCCCCCCEEEEEcCC-cHHHHHHHHHHHhcCcEEeeccccCCHHHHHHHHhccCCeE
Confidence 45778888887777665542 344444566555442 12222234556788899999999999999999999999999
Q ss_pred EEccC
Q psy9122 143 LVVPD 147 (169)
Q Consensus 143 ~i~p~ 147 (169)
+|+-.
T Consensus 115 ii~~~ 119 (579)
T PLN03102 115 LFVDR 119 (579)
T ss_pred EEECh
Confidence 99754
No 32
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=35.32 E-value=41 Score=30.99 Aligned_cols=33 Identities=18% Similarity=0.545 Sum_probs=29.5
Q ss_pred eeeeeeccccC---cChhHHHHhhhhcCcCeEEccC
Q psy9122 115 MKSIHCPIDTS---LNFNQANKLIRELKPSTLVVPD 147 (169)
Q Consensus 115 ~~~~~~pid~r---~~~~~~~~li~~l~P~~~i~p~ 147 (169)
.+++..|+|+. +|+.++.|++.+.|||.+|+=.
T Consensus 139 ~~~v~Y~vd~et~~IDyD~~~k~a~e~kPK~ii~G~ 174 (413)
T COG0112 139 FNVVSYGVDPETGLIDYDEVEKLAKEVKPKLIIAGG 174 (413)
T ss_pred EEeEecccccccCccCHHHHHHHHHHhCCCEEEECc
Confidence 68888999954 9999999999999999999864
No 33
>PRK05857 acyl-CoA synthetase; Validated
Probab=35.26 E-value=48 Score=29.89 Aligned_cols=82 Identities=12% Similarity=0.062 Sum_probs=57.6
Q ss_pred CCCHHHHHHHHHHHHhhhhHHHHhhccCCcee-EEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcC
Q psy9122 63 TRTLDELTGASYREIRAIAQERLKTHHFKNRQ-VTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPS 141 (169)
Q Consensus 63 ~~~ieeLk~aI~raw~sIs~e~l~g~~~~N~i-i~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~ 141 (169)
.-|-.+|.+++.+.-..+.. .|-.+...| ++.+..+ +-..+=|.-+.+-+.++|+|+++.-.++.+++...+|+
T Consensus 41 ~~Ty~el~~~~~~~a~~L~~---~g~~~g~~V~i~~~~~~--e~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~ 115 (540)
T PRK05857 41 ALRYRELVAEVGGLAADLRA---QSVSRGSRVLVISDNGP--ETYLSVLACAKLGAIAVMADGNLPIAAIERFCQITDPA 115 (540)
T ss_pred eeeHHHHHHHHHHHHHHHHH---hCcCCCCEEEEEcCCCH--HHHHHHHHHHHcCeEEEecCccCCHHHHHHHHHhcCCc
Confidence 35778888877777666553 233333333 3344433 33334466678999999999999999999999999999
Q ss_pred eEEccCCC
Q psy9122 142 TLVVPDCY 149 (169)
Q Consensus 142 ~~i~p~~y 149 (169)
.+++-...
T Consensus 116 ~ii~~~~~ 123 (540)
T PRK05857 116 AALVAPGS 123 (540)
T ss_pred eEEEeccc
Confidence 99887643
No 34
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=34.51 E-value=40 Score=30.70 Aligned_cols=60 Identities=18% Similarity=0.299 Sum_probs=37.5
Q ss_pred cCCceeEEeCCCCC---cccccCCC-----cccceeeeeeccc---cCcChhHHHHhhhhcCcCeEEccCC
Q psy9122 89 HFKNRQVTLEPDFP---YVEALAPF-----QPLAMKSIHCPID---TSLNFNQANKLIRELKPSTLVVPDC 148 (169)
Q Consensus 89 ~~~N~ii~~ep~~~---~~~~~~Pf-----~~l~~~~~~~pid---~r~~~~~~~~li~~l~P~~~i~p~~ 148 (169)
.|..+|+..+++.- .-.....+ ..+-.++.++++| -.+|+.++.+++.+.+|+.+|+-.+
T Consensus 108 ~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~~~~ID~d~l~~~a~~~kPklIi~G~S 178 (399)
T PF00464_consen 108 KPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPDTGLIDYDELEKLAKEHKPKLIICGAS 178 (399)
T ss_dssp -TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TTTSSB-HHHHHHHHHHH--SEEEEE-S
T ss_pred hhcCcEEecChhhcccccccccccccccccccceEEEEeeeeecCCCeECHHHHHHHHhhcCCCEEEECch
Confidence 56678888877542 11223344 3345678899999 4499999999999999999998764
No 35
>PF03184 DDE_1: DDE superfamily endonuclease; InterPro: IPR004875 These proteins are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. Interestingly this family also includes the CENP-B protein. This domain in that protein appears to have lost the metal binding residues and is unlikely to have endonuclease activity. Centromere Protein B (CENP-B) is a DNA-binding protein localised to the centromere []. ; GO: 0003676 nucleic acid binding
Probab=34.21 E-value=46 Score=25.94 Aligned_cols=77 Identities=14% Similarity=0.120 Sum_probs=55.4
Q ss_pred hhhhhcccccchhhhHHHHhcCCc--ccCCCCCC-CCCcccccccccccccccc----------CC------CCCHHHHH
Q psy9122 10 SLIASTASSNGQSKIEEVLQFCTH--FDFPPSSP-DLSSYDSFSWKYVKNKVYI----------YK------TRTLDELT 70 (169)
Q Consensus 10 ~~~~~~a~~~~~~~~~~wi~r~~~--~~WPp~SP-DLnPidf~lW~~LK~~vy~----------~~------~~~ieeLk 70 (169)
=++-+.+++|....+.+.+..++. +--|+.+- -|.|+|..+.+.+|..... .. ..+..+..
T Consensus 119 lLllD~~~~h~~~~~~~~~~~~~i~l~~lP~~~t~~lQPld~~v~~~~K~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (217)
T PF03184_consen 119 LLLLDSHSSHISPEFKQLCKSNNIILVFLPPNTTHLLQPLDVGVFGPFKAHYRKKLLQWIIENGNNPKDFLYKPTLLDAI 198 (217)
T ss_pred ccccccccccccccchhhhhccccccceecccccccccccchhhhhhhhHHHHHHHHHHHHhcccccccccCCcCHHHHH
Confidence 355677788887777777777663 45787666 5679999888999975421 11 13467788
Q ss_pred HHHHHHHhhhhHHHHh
Q psy9122 71 GASYREIRAIAQERLK 86 (169)
Q Consensus 71 ~aI~raw~sIs~e~l~ 86 (169)
+.+.++|.+++.+.+.
T Consensus 199 ~~~~~AW~~v~~~~I~ 214 (217)
T PF03184_consen 199 RWISKAWNSVTSETIR 214 (217)
T ss_pred HHHHHHHHHCCHHHHH
Confidence 8899999999988765
No 36
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=34.09 E-value=36 Score=24.80 Aligned_cols=34 Identities=12% Similarity=0.140 Sum_probs=28.5
Q ss_pred CCccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 43 LSSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 43 LnPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
-+|+| ++.+++++..+...+.+++.+-+...|.+
T Consensus 44 k~Pmd---L~tI~~kl~~~~Y~s~~ef~~D~~l~~~N 77 (105)
T cd05515 44 KKPID---MEKIRSKIEGNQYQSLDDMVSDFVLMFDN 77 (105)
T ss_pred CCCcC---HHHHHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 35788 48899999999999999999988877754
No 37
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=33.33 E-value=38 Score=24.72 Aligned_cols=34 Identities=6% Similarity=0.109 Sum_probs=28.4
Q ss_pred CCccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 43 LSSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 43 LnPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
-+|+| ++.+++++.++...+++++..-+...|.+
T Consensus 44 ~~Pmd---L~tI~~kl~~~~Y~s~~~f~~D~~lm~~N 77 (103)
T cd05517 44 KEPID---LKTIAQRIQSGYYKSIEDMEKDLDLMVKN 77 (103)
T ss_pred CCCcC---HHHHHHHHCcCCCCCHHHHHHHHHHHHHH
Confidence 46888 48999999999999999999988877654
No 38
>PRK07514 malonyl-CoA synthase; Validated
Probab=33.26 E-value=50 Score=28.93 Aligned_cols=82 Identities=15% Similarity=0.149 Sum_probs=58.0
Q ss_pred CCCCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcC
Q psy9122 62 KTRTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPS 141 (169)
Q Consensus 62 ~~~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~ 141 (169)
..-|-.+|.+++.+.-..+.. .|-.+..+|.+.=++ ..+-.++=+.-+.+-+.++|+|++..-.++..+++..+|+
T Consensus 27 ~~~Ty~eL~~~~~~la~~L~~---~g~~~gd~v~i~~~~-~~e~~v~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~ 102 (504)
T PRK07514 27 LRYTYGDLDAASARLANLLVA---LGVKPGDRVAVQVEK-SPEALALYLATLRAGAVFLPLNTAYTLAELDYFIGDAEPA 102 (504)
T ss_pred CEEcHHHHHHHHHHHHHHHHH---cCCCCCCEEEEECCC-CHHHHHHHHHHHHcCcEEEECCCCCCHHHHHHHHHhCCCc
Confidence 345778888877777665553 233334454444332 2334444567778999999999999999999999999999
Q ss_pred eEEccC
Q psy9122 142 TLVVPD 147 (169)
Q Consensus 142 ~~i~p~ 147 (169)
.+++..
T Consensus 103 ~ii~~~ 108 (504)
T PRK07514 103 LVVCDP 108 (504)
T ss_pred EEEEcc
Confidence 998864
No 39
>PRK08316 acyl-CoA synthetase; Validated
Probab=32.86 E-value=73 Score=27.93 Aligned_cols=84 Identities=17% Similarity=0.130 Sum_probs=57.9
Q ss_pred CCCCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcC
Q psy9122 62 KTRTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPS 141 (169)
Q Consensus 62 ~~~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~ 141 (169)
..-|-.+|.+.+.+....+... |-.+...|.+.=+ -...-.++=+.-+.+.+..+|+|+.+.-.++..+++..+++
T Consensus 35 ~~~Ty~~l~~~~~~~a~~L~~~---gi~~~~~V~l~~~-~~~~~~~~~~a~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~ 110 (523)
T PRK08316 35 RSWTYAELDAAVNRVAAALLDL---GLKKGDRVAALGH-NSDAYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGAR 110 (523)
T ss_pred ceeeHHHHHHHHHHHHHHHHHc---CCCCCCEEEEECC-CCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHHhCCCC
Confidence 4457788888877776666532 3333344444322 12223333455568899999999999999999999999999
Q ss_pred eEEccCCC
Q psy9122 142 TLVVPDCY 149 (169)
Q Consensus 142 ~~i~p~~y 149 (169)
.+|+....
T Consensus 111 ~ii~~~~~ 118 (523)
T PRK08316 111 AFLVDPAL 118 (523)
T ss_pred EEEEccch
Confidence 99887543
No 40
>smart00297 BROMO bromo domain.
Probab=32.79 E-value=39 Score=23.83 Aligned_cols=34 Identities=15% Similarity=0.095 Sum_probs=28.3
Q ss_pred CCccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 43 LSSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 43 LnPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
-+|+| |+.++.++..+...+.+++.+-+...|.+
T Consensus 45 ~~P~d---l~~I~~kl~~~~Y~s~~ef~~D~~li~~N 78 (107)
T smart00297 45 KKPMD---LSTIKKKLENGKYSSVEEFVADVQLMFSN 78 (107)
T ss_pred cCCCC---HHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 45888 58899999889999999999988877654
No 41
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=32.74 E-value=38 Score=24.87 Aligned_cols=33 Identities=9% Similarity=-0.029 Sum_probs=27.8
Q ss_pred CccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 44 SSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 44 nPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
+|+| ++.+++++..+...+++++.+-+...|.+
T Consensus 46 ~PmD---L~tI~~kL~~~~Y~s~~ef~~D~~li~~N 78 (107)
T cd05497 46 TPMD---LGTIKKRLENNYYWSASECIQDFNTMFTN 78 (107)
T ss_pred Cccc---HHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 5777 48889999989999999999988877754
No 42
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=32.70 E-value=38 Score=24.46 Aligned_cols=33 Identities=12% Similarity=0.091 Sum_probs=27.9
Q ss_pred CccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 44 SSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 44 nPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
+|+|+ +.++.++.++...+.+++.+.+...|.+
T Consensus 45 ~P~dL---~tI~~kl~~~~Y~s~~~f~~D~~li~~N 77 (103)
T cd05500 45 KPMDL---GTIERKLKSNVYTSVEEFTADFNLMVDN 77 (103)
T ss_pred CCCCH---HHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 57774 8888999888999999999988888764
No 43
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed
Probab=32.50 E-value=78 Score=28.11 Aligned_cols=81 Identities=9% Similarity=-0.016 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHhhhhHHHHhhc-cCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcCeE
Q psy9122 65 TLDELTGASYREIRAIAQERLKTH-HFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTL 143 (169)
Q Consensus 65 ~ieeLk~aI~raw~sIs~e~l~g~-~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~~ 143 (169)
+-+||.+++.+.-+.+.. .|- .....|.+..++- .+-..+=|.-+.+.+..+|+|+++.-.++..++.+.+|+.+
T Consensus 21 ~~~el~~~~~~~a~~L~~---~g~~~~~~~V~i~~~n~-~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~ 96 (452)
T PRK07445 21 NSQRFYQLAQQLYLQLQQ---LATPRTPPKILLAESDP-LQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQI 96 (452)
T ss_pred ChHHHHHHHHHHHHHHHH---hcCCCCCCeEEEecCCC-HHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEE
Confidence 457777777766555543 222 2234565555532 23333456677899999999999999999999999999999
Q ss_pred EccCCC
Q psy9122 144 VVPDCY 149 (169)
Q Consensus 144 i~p~~y 149 (169)
|+...+
T Consensus 97 i~~~~~ 102 (452)
T PRK07445 97 WGLDQL 102 (452)
T ss_pred EecCcc
Confidence 986644
No 44
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=32.45 E-value=38 Score=25.32 Aligned_cols=34 Identities=15% Similarity=0.213 Sum_probs=29.5
Q ss_pred CccccccccccccccccCCCCCHHHHHHHHHHHHhhh
Q psy9122 44 SSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRAI 80 (169)
Q Consensus 44 nPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~sI 80 (169)
+|+|+ +.+++++..+...+++|+.+-+.-.|.+.
T Consensus 45 ~PmDL---~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~ 78 (109)
T cd05492 45 THLDV---ADIQEKINSEKYTSLEEFKADALLLLHNT 78 (109)
T ss_pred CCCcH---HHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 68885 89999999999999999999888887654
No 45
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=32.20 E-value=40 Score=24.40 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=28.0
Q ss_pred CccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 44 SSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 44 nPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
+|+| ++.+++++......+.+++..-+.-.|.+
T Consensus 40 ~PmD---L~tI~~kl~~~~Y~s~~ef~~D~~li~~N 72 (98)
T cd05512 40 QPMD---FSTMRKKLESQRYRTLEDFEADFNLIINN 72 (98)
T ss_pred CCcC---HHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 5888 48899999999999999999988877754
No 46
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=32.19 E-value=42 Score=24.12 Aligned_cols=34 Identities=9% Similarity=0.017 Sum_probs=28.4
Q ss_pred CCccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 43 LSSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 43 LnPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
-+|+| ++.+++++..+...+.+++.+.++..|.+
T Consensus 43 ~~P~d---L~~I~~kl~~~~Y~s~~ef~~D~~li~~N 76 (102)
T cd05499 43 KKPMD---LGTISKKLQNGQYQSAKEFERDVRLIFKN 76 (102)
T ss_pred cCCCC---HHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 35777 48899999999999999999988887754
No 47
>PLN02330 4-coumarate--CoA ligase-like 1
Probab=31.61 E-value=56 Score=29.34 Aligned_cols=81 Identities=14% Similarity=0.052 Sum_probs=54.8
Q ss_pred CCCHHHHHHHHHHHHhhhhHHHHhhccCCcee-EEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcC
Q psy9122 63 TRTLDELTGASYREIRAIAQERLKTHHFKNRQ-VTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPS 141 (169)
Q Consensus 63 ~~~ieeLk~aI~raw~sIs~e~l~g~~~~N~i-i~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~ 141 (169)
.-|-.+|.+++.+.-..+.. .|-.+...| ++.++...+-. +=|.-+.+-+.++|||++..-.++..++++.+++
T Consensus 55 ~~Ty~~l~~~~~~la~~L~~---~g~~~g~~V~i~~~~~~~~~~--~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~ 129 (546)
T PLN02330 55 AVTYGEVVRDTRRFAKALRS---LGLRKGQVVVVVLPNVAEYGI--VALGIMAAGGVFSGANPTALESEIKKQAEAAGAK 129 (546)
T ss_pred cccHHHHHHHHHHHHHHHHH---hCCCCCCEEEEECCCchHHHH--HHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCe
Confidence 34667777766655554442 233333444 33344333333 3356678889999999999999999999999999
Q ss_pred eEEccCC
Q psy9122 142 TLVVPDC 148 (169)
Q Consensus 142 ~~i~p~~ 148 (169)
.+|+...
T Consensus 130 ~~i~~~~ 136 (546)
T PLN02330 130 LIVTNDT 136 (546)
T ss_pred EEEEccc
Confidence 9988654
No 48
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=31.54 E-value=41 Score=24.44 Aligned_cols=33 Identities=12% Similarity=0.151 Sum_probs=28.0
Q ss_pred CccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 44 SSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 44 nPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
+|+| ++.+++++......+++++.+-+...|.+
T Consensus 40 ~PmD---L~tI~~kl~~~~Y~s~~~f~~D~~li~~N 72 (98)
T cd05513 40 HPMD---FSTMKEKIKNNDYQSIEEFKDDFKLMCEN 72 (98)
T ss_pred CccC---HHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 5788 48899999999999999999988877754
No 49
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=31.47 E-value=44 Score=24.73 Aligned_cols=40 Identities=13% Similarity=-0.018 Sum_probs=31.6
Q ss_pred CCCCCC-----CCccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 37 PPSSPD-----LSSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 37 Pp~SPD-----LnPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
|..-|| -+|+|. +.+++++..+...+.++..+-+...|.+
T Consensus 27 p~~~pdY~~iIk~PMDL---~tI~~kL~~~~Y~s~~ef~~D~~Lif~N 71 (102)
T cd05501 27 PYYIRDYCQGIKEPMWL---NKVKERLNERVYHTVEGFVRDMRLIFHN 71 (102)
T ss_pred CCCCCchHHHcCCCCCH---HHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 344556 368883 8899999999999999999988877755
No 50
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=31.40 E-value=42 Score=24.85 Aligned_cols=34 Identities=12% Similarity=0.093 Sum_probs=28.6
Q ss_pred CCccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 43 LSSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 43 LnPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
-+|+| ++.+++++..+...+++++.+-+...|.+
T Consensus 38 ~~Pmd---L~tI~~kl~~~~Y~s~~ef~~Dv~li~~N 71 (112)
T cd05511 38 KRPMD---LQTIRKKISKHKYQSREEFLEDIELIVDN 71 (112)
T ss_pred cCCCC---HHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 46787 48899999999999999999988887764
No 51
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=30.85 E-value=43 Score=23.89 Aligned_cols=33 Identities=15% Similarity=0.023 Sum_probs=27.8
Q ss_pred CccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 44 SSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 44 nPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
+|+| ++.+++++..+...+.+++...+...|.+
T Consensus 40 ~Pmd---L~tI~~kl~~~~Y~s~~~f~~Dv~li~~N 72 (101)
T cd05509 40 KPMD---LSTMEEKLENGYYVTLEEFVADLKLIFDN 72 (101)
T ss_pred CCCC---HHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 5777 48889999889999999999988888764
No 52
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=29.38 E-value=49 Score=24.22 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=28.8
Q ss_pred CCccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 43 LSSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 43 LnPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
-+|+| ++.+++++..+...+.+++.+-+...|.+
T Consensus 45 ~~Pmd---l~tI~~kl~~~~Y~s~~ef~~D~~li~~N 78 (107)
T cd05516 45 RKPVD---FKKIKERIRNHKYRSLEDLEKDVMLLCQN 78 (107)
T ss_pred CCCCC---HHHHHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 56888 48999999999999999999988877754
No 53
>PRK06187 long-chain-fatty-acid--CoA ligase; Validated
Probab=28.91 E-value=90 Score=27.23 Aligned_cols=82 Identities=15% Similarity=0.139 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcCeE
Q psy9122 64 RTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTL 143 (169)
Q Consensus 64 ~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~~ 143 (169)
-|-.+|.+++.+.-..+.. .|-.+..+|.+.-|+ ...-..+=+.-+...+.++|+++++.-.++..+++..+|+.+
T Consensus 32 ~Ty~~l~~~~~~~a~~L~~---~g~~~~~~V~l~~~~-~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i 107 (521)
T PRK06187 32 TTYAELDERVNRLANALRA---LGVKKGDRVAVFDWN-SHEYLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVV 107 (521)
T ss_pred EcHHHHHHHHHHHHHHHHH---cCCCCCCEEEEECCC-CHHHHHHHHHHHHcCeEEEecccCCCHHHHHHHHHhcCCeEE
Confidence 5667887777666655553 233333444443331 222222335556888999999999999999999999999999
Q ss_pred EccCCC
Q psy9122 144 VVPDCY 149 (169)
Q Consensus 144 i~p~~y 149 (169)
++...+
T Consensus 108 ~~~~~~ 113 (521)
T PRK06187 108 LVDSEF 113 (521)
T ss_pred EEcchH
Confidence 887654
No 54
>PLN02860 o-succinylbenzoate-CoA ligase
Probab=28.90 E-value=1.1e+02 Score=27.67 Aligned_cols=83 Identities=12% Similarity=0.102 Sum_probs=58.4
Q ss_pred CCCCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcC
Q psy9122 62 KTRTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPS 141 (169)
Q Consensus 62 ~~~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~ 141 (169)
+.-|-.+|.+++.+.-+.+.. .|-.+..+|.+.=++ ..+-+.+=|.-+.+-+.++||++++.-.++..++.+.+|+
T Consensus 31 ~~~Ty~el~~~~~~la~~L~~---~Gv~~gd~V~v~~~n-~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~ 106 (563)
T PLN02860 31 RRRTGHEFVDGVLSLAAGLLR---LGLRNGDVVAIAALN-SDLYLEWLLAVACAGGIVAPLNYRWSFEEAKSAMLLVRPV 106 (563)
T ss_pred ceeeHHHHHHHHHHHHHHHHH---hCCCCCCEEEEEcCC-CHHHHHHHHHHhhccEEEEeCCcccCHHHHHHHHHhcCce
Confidence 345778888877766665543 344455566555442 1222223456678899999999999999999999999999
Q ss_pred eEEccCC
Q psy9122 142 TLVVPDC 148 (169)
Q Consensus 142 ~~i~p~~ 148 (169)
.+++-..
T Consensus 107 ~i~~~~~ 113 (563)
T PLN02860 107 MLVTDET 113 (563)
T ss_pred EEEEecc
Confidence 9998653
No 55
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=28.81 E-value=49 Score=24.31 Aligned_cols=33 Identities=6% Similarity=0.003 Sum_probs=27.6
Q ss_pred CccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 44 SSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 44 nPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
+|+|+ +.+++++.+....+.+++.+-+...|.+
T Consensus 45 ~PmDL---~tI~~kL~~~~Y~s~~ef~~D~~li~~N 77 (108)
T cd05495 45 NPMDL---STIRRKLDTGQYQDPWQYVDDVWLMFDN 77 (108)
T ss_pred CCCCH---HHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 57884 8889999888999999999988877764
No 56
>PRK06839 acyl-CoA synthetase; Validated
Probab=28.73 E-value=96 Score=27.04 Aligned_cols=87 Identities=14% Similarity=0.114 Sum_probs=59.1
Q ss_pred cCCCCCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcC
Q psy9122 60 IYKTRTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELK 139 (169)
Q Consensus 60 ~~~~~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~ 139 (169)
..+.-|-.+|.+++.+.-..+... .|-.+...|.+.-++ +.+-.++=|.-+...+.++||+++++-.++..++++.+
T Consensus 24 ~~~~~ty~~l~~~~~~la~~L~~~--~g~~~~~~V~i~~~~-~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~l~~~~ 100 (496)
T PRK06839 24 EEEEMTYKQLHEYVSKVAAYLIYE--LNVKKGERIAILSQN-SLEYIVLLFAIAKVECIAVPLNIRLTENELIFQLKDSG 100 (496)
T ss_pred CCceEEHHHHHHHHHHHHHHHHHh--cCCCCCCEEEEECCC-CHHHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhcC
Confidence 345557788888777765554321 133344444444332 23344445666788999999999999999999999999
Q ss_pred cCeEEccCCC
Q psy9122 140 PSTLVVPDCY 149 (169)
Q Consensus 140 P~~~i~p~~y 149 (169)
|+.+++-..+
T Consensus 101 ~~~i~~~~~~ 110 (496)
T PRK06839 101 TTVLFVEKTF 110 (496)
T ss_pred ceEEEEcHHH
Confidence 9999876443
No 57
>PRK07656 long-chain-fatty-acid--CoA ligase; Validated
Probab=28.52 E-value=92 Score=27.22 Aligned_cols=84 Identities=18% Similarity=0.181 Sum_probs=58.8
Q ss_pred CCCCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcC
Q psy9122 62 KTRTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPS 141 (169)
Q Consensus 62 ~~~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~ 141 (169)
..-|-.+|.+.+.+.-..+.. .|-.+...|.+.-+ -...-.++=+.-+..-+.++|++++..-.++..++.+..|+
T Consensus 29 ~~~Ty~~l~~~~~~~a~~L~~---~gv~~g~~V~l~~~-~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~ 104 (513)
T PRK07656 29 QRLTYAELNARVRRAAAALAA---LGIGKGDRVAIWAP-NSPHWVIAALGALKAGAVVVPLNTRYTADEAAYILARGDAK 104 (513)
T ss_pred CceeHHHHHHHHHHHHHHHHH---cCCCCCCEEEEECC-CChHHHHHHHHHHhcCeEEEecCcccCHHHHHHHHhhcCce
Confidence 345778888877777665542 23444444544433 12333334455678899999999999999999999999999
Q ss_pred eEEccCCC
Q psy9122 142 TLVVPDCY 149 (169)
Q Consensus 142 ~~i~p~~y 149 (169)
.+++...+
T Consensus 105 ~ii~~~~~ 112 (513)
T PRK07656 105 ALFVLGLF 112 (513)
T ss_pred EEEEchhh
Confidence 99987654
No 58
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=28.45 E-value=48 Score=25.00 Aligned_cols=33 Identities=12% Similarity=-0.016 Sum_probs=28.2
Q ss_pred CccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 44 SSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 44 nPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
+|+|+ +.+|+++..+...+.+++.+-+...|.+
T Consensus 44 ~PmDL---~tIk~kL~~~~Y~~~~ef~~D~~lif~N 76 (119)
T cd05496 44 TPMDL---GTVKETLFGGNYDDPMEFAKDVRLIFSN 76 (119)
T ss_pred CcccH---HHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 57874 8899999999999999999988887764
No 59
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=28.27 E-value=52 Score=23.97 Aligned_cols=34 Identities=15% Similarity=0.115 Sum_probs=28.6
Q ss_pred CCccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 43 LSSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 43 LnPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
-+|++ ++.+++++.++...+++++.+-+...|.+
T Consensus 45 ~~Pmd---l~tI~~kl~~~~Y~s~~~f~~D~~li~~N 78 (104)
T cd05522 45 SNPIS---LDDIKKKVKRRKYKSFDQFLNDLNLMFEN 78 (104)
T ss_pred CCCcC---HHHHHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 56888 48899999999999999999988877754
No 60
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=28.27 E-value=50 Score=24.58 Aligned_cols=33 Identities=12% Similarity=0.090 Sum_probs=27.7
Q ss_pred CccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 44 SSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 44 nPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
+|+|+ +.+++++..+...+.+++.+-+.-.|.+
T Consensus 51 ~PmDL---~tI~~kL~~~~Y~s~~~f~~Dv~LI~~N 83 (115)
T cd05504 51 KPMDL---GTIKEKLNMGEYKLAEEFLSDIQLVFSN 83 (115)
T ss_pred CcccH---HHHHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 57774 8888999889999999999988877764
No 61
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=27.68 E-value=55 Score=23.61 Aligned_cols=34 Identities=9% Similarity=0.015 Sum_probs=28.5
Q ss_pred CCccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 43 LSSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 43 LnPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
-+|+| ++.+++++.++...+.+++..-+...|.+
T Consensus 44 k~Pmd---l~~I~~kl~~~~Y~s~~~f~~D~~li~~N 77 (103)
T cd05519 44 KRPIA---LDQIKRRIEGRAYKSLEEFLEDFHLMFAN 77 (103)
T ss_pred CCCcC---HHHHHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 35888 48999999999999999999888877754
No 62
>PF07592 DDE_Tnp_ISAZ013: Rhodopirellula transposase DDE domain; InterPro: IPR011518 These transposases are found in the planctomycete Rhodopirellula baltica, the cyanobacterium Nostoc, and the Gram-positive bacterium Streptomyces. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=27.35 E-value=54 Score=29.08 Aligned_cols=42 Identities=5% Similarity=0.084 Sum_probs=37.1
Q ss_pred cCCCCCCCCCccccccccccccccccCCCCCHHHHHHHHHHH
Q psy9122 35 DFPPSSPDLSSYDSFSWKYVKNKVYIYKTRTLDELTGASYRE 76 (169)
Q Consensus 35 ~WPp~SPDLnPidf~lW~~LK~~vy~~~~~~ieeLk~aI~ra 76 (169)
--||+.---||||.-+|+++.+.-.+.+..|.|-+.+.|...
T Consensus 221 hyPP~tSKwN~IEHRlfs~is~~w~G~pl~S~e~vv~lIa~T 262 (311)
T PF07592_consen 221 HYPPGTSKWNPIEHRLFSHISRNWRGRPLTSHEVVVNLIAAT 262 (311)
T ss_pred EcCCCcccccchhhhHhHhhhhhcCCCcCCCHHHHHHHHHhh
Confidence 479999999999988999999999999999998888766544
No 63
>PRK13382 acyl-CoA synthetase; Provisional
Probab=27.33 E-value=93 Score=27.97 Aligned_cols=83 Identities=12% Similarity=-0.074 Sum_probs=56.9
Q ss_pred CCCCHHHHHHHHHHHHhhhhHHHHhhccCCceeEE-eCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCc
Q psy9122 62 KTRTLDELTGASYREIRAIAQERLKTHHFKNRQVT-LEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKP 140 (169)
Q Consensus 62 ~~~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~-~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P 140 (169)
..-|-.+|.+++.+.-..+.. .|-.+...|.+ .+... .-..+=|.-+.+-+.++|+++.+.-.++..++++.+|
T Consensus 67 ~~~Ty~el~~~~~~~A~~L~~---~g~~~g~~V~i~~~n~~--~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~ 141 (537)
T PRK13382 67 GTLTWRELDERSDALAAALQA---LPIGEPRVVGIMCRNHR--GFVEALLAANRIGADILLLNTSFAGPALAEVVTREGV 141 (537)
T ss_pred CeecHHHHHHHHHHHHHHHHH---cCCCCCCEEEEEecCcH--HHHHHHHHHHHcCcEEEecCcccCHHHHHHHHHhcCC
Confidence 345677888777766555532 23333334433 33322 2333446667889999999999999999999999999
Q ss_pred CeEEccCCC
Q psy9122 141 STLVVPDCY 149 (169)
Q Consensus 141 ~~~i~p~~y 149 (169)
+.+|+...+
T Consensus 142 ~~vi~~~~~ 150 (537)
T PRK13382 142 DTVIYDEEF 150 (537)
T ss_pred CEEEEchhh
Confidence 999986543
No 64
>PLN02654 acetate-CoA ligase
Probab=27.08 E-value=98 Score=29.11 Aligned_cols=83 Identities=12% Similarity=0.071 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcCeE
Q psy9122 64 RTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTL 143 (169)
Q Consensus 64 ~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~~ 143 (169)
-|-.||.+++.+.-..+. -.|-.+..+|.+.=|+-. +-+.+=+.-+.+-++++|+++.+.-.++...|.+.+|+.+
T Consensus 121 ~Ty~eL~~~v~~lA~~L~---~~Gv~~GdrV~i~~pn~~-e~v~a~lA~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~l 196 (666)
T PLN02654 121 LTYSELLDRVCQLANYLK---DVGVKKGDAVVIYLPMLM-ELPIAMLACARIGAVHSVVFAGFSAESLAQRIVDCKPKVV 196 (666)
T ss_pred EeHHHHHHHHHHHHHHHH---HcCCCCCCEEEEEcCCCH-HHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEE
Confidence 467888887777766554 245556677777766422 2222345556888999999999999999999999999999
Q ss_pred EccCCCc
Q psy9122 144 VVPDCYT 150 (169)
Q Consensus 144 i~p~~y~ 150 (169)
|+-..+.
T Consensus 197 i~~~~~~ 203 (666)
T PLN02654 197 ITCNAVK 203 (666)
T ss_pred EEcCccc
Confidence 9987654
No 65
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=27.07 E-value=55 Score=24.26 Aligned_cols=34 Identities=18% Similarity=0.102 Sum_probs=28.5
Q ss_pred CCccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 43 LSSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 43 LnPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
-+|+|+ +.+++++......+.+++.+-+.-.|.+
T Consensus 46 ~~Pmdl---~tI~~kl~~~~Y~s~~~f~~D~~lm~~N 79 (113)
T cd05524 46 SNPIDL---LKIQQKLKTEEYDDVDDLTADFELLINN 79 (113)
T ss_pred CCccCH---HHHHHHhCcCCCCCHHHHHHHHHHHHHH
Confidence 568884 8899999999999999999888777654
No 66
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.
Probab=26.89 E-value=1.1e+02 Score=28.69 Aligned_cols=82 Identities=15% Similarity=0.128 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcCeE
Q psy9122 64 RTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTL 143 (169)
Q Consensus 64 ~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~~ 143 (169)
-|-.||.+++.+.-..+.. .|-.+..+|.+.=|+- .+-+++=+.-+.+-++++|+++++.-.++...+.+.+|+.+
T Consensus 115 ~Ty~eL~~~v~~lA~~L~~---~Gv~~GdrV~i~~~n~-~e~~~~~lA~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~l 190 (652)
T TIGR01217 115 VTWAELRRQVASLAAALRA---LGVRPGDRVSGYLPNI-PQAVVAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLL 190 (652)
T ss_pred EeHHHHHHHHHHHHHHHHH---cCCCCCCEEEEEcCCC-HHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCcEE
Confidence 4678888887777666542 3555667777766642 22233445567888999999999999999999999999999
Q ss_pred EccCCC
Q psy9122 144 VVPDCY 149 (169)
Q Consensus 144 i~p~~y 149 (169)
|+...+
T Consensus 191 i~~~~~ 196 (652)
T TIGR01217 191 FTVDGY 196 (652)
T ss_pred EEcccc
Confidence 998765
No 67
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=26.84 E-value=71 Score=24.19 Aligned_cols=31 Identities=19% Similarity=0.429 Sum_probs=21.8
Q ss_pred ceeeeeeccccC--cChhHHHHhhhhcCcCeEE
Q psy9122 114 AMKSIHCPIDTS--LNFNQANKLIRELKPSTLV 144 (169)
Q Consensus 114 ~~~~~~~pid~r--~~~~~~~~li~~l~P~~~i 144 (169)
.+.++++|+.-+ ++..+|-++++.++|+.+|
T Consensus 128 ~vDvl~~p~~g~~~~~~~~a~~~~~~l~pk~vi 160 (163)
T PF13483_consen 128 KVDVLFLPVGGPFTMGPEEAAELAERLKPKLVI 160 (163)
T ss_dssp S-SEEEEE--TTTS--HHHHHHHHHHCT-SEEE
T ss_pred CCCEEEecCCCCcccCHHHHHHHHHHcCCCEEE
Confidence 788889998765 7889999999999999765
No 68
>PRK07798 acyl-CoA synthetase; Validated
Probab=26.63 E-value=77 Score=27.80 Aligned_cols=83 Identities=13% Similarity=0.114 Sum_probs=56.2
Q ss_pred CCCCCHHHHHHHHHHHHhhhhHHHHhhccCCc-eeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcC
Q psy9122 61 YKTRTLDELTGASYREIRAIAQERLKTHHFKN-RQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELK 139 (169)
Q Consensus 61 ~~~~~ieeLk~aI~raw~sIs~e~l~g~~~~N-~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~ 139 (169)
.+.-|-.+|.+++.+.-..+.. .|-.+.. ..++.+...+..- +=|.-+.+-+.++|+|+++.-.++..++.+.+
T Consensus 26 ~~~~ty~el~~~~~~la~~L~~---~g~~~~~~v~v~~~n~~~~~~--~~~a~~~~G~~~v~l~~~~~~~~l~~~l~~~~ 100 (533)
T PRK07798 26 DRRLTYAELEERANRLAHYLIA---QGLGPGDHVGIYARNRIEYVE--AMLGAFKARAVPVNVNYRYVEDELRYLLDDSD 100 (533)
T ss_pred CceeeHHHHHHHHHHHHHHHHH---cCCCCCCEEEEEcCCCHHHHH--HHHHHHhcCeEEEecCcCCCHHHHHHHHhhcC
Confidence 3455777888777666555532 1222223 3344444333332 33666789999999999999999999999999
Q ss_pred cCeEEccCC
Q psy9122 140 PSTLVVPDC 148 (169)
Q Consensus 140 P~~~i~p~~ 148 (169)
|+.+++...
T Consensus 101 ~~~~~~~~~ 109 (533)
T PRK07798 101 AVALVYERE 109 (533)
T ss_pred CCEEEEchh
Confidence 999988654
No 69
>TIGR03205 pimA dicarboxylate--CoA ligase PimA. PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.
Probab=26.60 E-value=80 Score=28.26 Aligned_cols=80 Identities=11% Similarity=0.003 Sum_probs=54.3
Q ss_pred CCCHHHHHHHHHHHHhhhhHHHHhhccCCceeEE-eCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcC
Q psy9122 63 TRTLDELTGASYREIRAIAQERLKTHHFKNRQVT-LEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPS 141 (169)
Q Consensus 63 ~~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~-~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~ 141 (169)
.-|-.+|.+++.+.-..+.. .|-.+..+|.+ .+....+- .+=+.-+.+-+.++|++++....++..++++.+|+
T Consensus 46 ~~ty~el~~~~~~~a~~L~~---~gi~~g~~V~i~~~~~~~~~--~~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~ 120 (541)
T TIGR03205 46 PITYTELEAMAETAAAALLR---AGYGKDASVALYLGNTPDHP--INFFGALKAGARVVHLSPLDGERALSHKLSDSGAR 120 (541)
T ss_pred EeeHHHHHHHHHHHHHHHHH---cCCCCCCEEEEECCCChHHH--HHHHHHHhcCeEEEecCCCCCHHHHHHHHhhcCce
Confidence 35777888777766555432 23333344433 33322222 23345568899999999999999999999999999
Q ss_pred eEEccC
Q psy9122 142 TLVVPD 147 (169)
Q Consensus 142 ~~i~p~ 147 (169)
.+|+-+
T Consensus 121 ~vi~~~ 126 (541)
T TIGR03205 121 LLITSD 126 (541)
T ss_pred EEEEeC
Confidence 999864
No 70
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=26.59 E-value=58 Score=23.76 Aligned_cols=34 Identities=24% Similarity=0.159 Sum_probs=28.2
Q ss_pred CCccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 43 LSSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 43 LnPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
-+|+|+ +.++.++.+....+.+++.+-+...|.+
T Consensus 44 k~Pmdl---~tI~~kl~~~~Y~s~~ef~~D~~li~~N 77 (103)
T cd05518 44 LEPIDL---KTIEHNIRNDKYATEEELMDDFKLMFRN 77 (103)
T ss_pred CCCcCH---HHHHHHHCCCCCCCHHHHHHHHHHHHHH
Confidence 468884 8899999999999999999888777653
No 71
>KOG4710|consensus
Probab=26.53 E-value=22 Score=28.71 Aligned_cols=15 Identities=27% Similarity=0.182 Sum_probs=13.1
Q ss_pred cccCCCCCCCCCccc
Q psy9122 33 HFDFPPSSPDLSSYD 47 (169)
Q Consensus 33 ~~~WPp~SPDLnPid 47 (169)
.+.||.+|||.++|=
T Consensus 88 eiF~P~~~pd~~~iv 102 (170)
T KOG4710|consen 88 EIFQPQQSPDQLVIV 102 (170)
T ss_pred eeeccCCCCCcCeee
Confidence 468999999999984
No 72
>PRK07788 acyl-CoA synthetase; Validated
Probab=26.37 E-value=1.2e+02 Score=27.16 Aligned_cols=84 Identities=17% Similarity=0.049 Sum_probs=58.2
Q ss_pred CCCCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcC
Q psy9122 62 KTRTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPS 141 (169)
Q Consensus 62 ~~~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~ 141 (169)
..-|-.+|.+++.+.-..+.. .|-.+...|.+.-++ ..+-..+=|.-+..-+.++|+|+++.-.++..++.+.+|+
T Consensus 73 ~~~Ty~el~~~~~~la~~L~~---~gi~~gd~V~i~~~n-~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~ 148 (549)
T PRK07788 73 GTLTYAELDEQSNALARGLLA---LGVRAGDGVAVLARN-HRGFVLALYAAGKVGARIILLNTGFSGPQLAEVAAREGVK 148 (549)
T ss_pred CceeHHHHHHHHHHHHHHHHH---cCCCCCCEEEEEcCC-CHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCc
Confidence 445778888777766555542 233334455544432 2333334466678899999999999999999999999999
Q ss_pred eEEccCCC
Q psy9122 142 TLVVPDCY 149 (169)
Q Consensus 142 ~~i~p~~y 149 (169)
.+|+...+
T Consensus 149 ~ii~~~~~ 156 (549)
T PRK07788 149 ALVYDDEF 156 (549)
T ss_pred EEEECchh
Confidence 99986544
No 73
>PRK00174 acetyl-CoA synthetase; Provisional
Probab=26.15 E-value=1.2e+02 Score=28.02 Aligned_cols=82 Identities=15% Similarity=0.050 Sum_probs=58.9
Q ss_pred CCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcCeE
Q psy9122 64 RTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTL 143 (169)
Q Consensus 64 ~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~~ 143 (169)
-|-.+|.+++.+.-..+.. .|-.+..+|.+.=|+ ..+-.++=+.-+.+-++++||++++.-.++..++++.+|+.+
T Consensus 99 lTy~eL~~~v~~lA~~L~~---~Gv~~gd~V~i~~~n-~~e~~~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~l 174 (637)
T PRK00174 99 ITYRELHREVCRFANALKS---LGVKKGDRVAIYMPM-IPEAAVAMLACARIGAVHSVVFGGFSAEALADRIIDAGAKLV 174 (637)
T ss_pred EEHHHHHHHHHHHHHHHHH---cCCCCCCEEEEEcCC-CHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCCcEE
Confidence 4677888877766555542 344455566655442 233333455667889999999999999999999999999999
Q ss_pred EccCCC
Q psy9122 144 VVPDCY 149 (169)
Q Consensus 144 i~p~~y 149 (169)
|+...+
T Consensus 175 i~~~~~ 180 (637)
T PRK00174 175 ITADEG 180 (637)
T ss_pred EEcCcc
Confidence 987654
No 74
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=26.09 E-value=61 Score=23.63 Aligned_cols=34 Identities=15% Similarity=0.105 Sum_probs=28.3
Q ss_pred CCccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 43 LSSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 43 LnPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
-+|+| ++.+++++.++...+.+++..-+...|.+
T Consensus 44 ~~Pmd---L~tI~~kl~~~~Y~s~~~f~~D~~lm~~N 77 (103)
T cd05520 44 KNPIS---LQQIRTKLKNGEYETLEELEADLNLMFEN 77 (103)
T ss_pred CCCcC---HHHHHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 46888 48999999999999999999888777653
No 75
>PRK03584 acetoacetyl-CoA synthetase; Provisional
Probab=25.83 E-value=1.2e+02 Score=28.25 Aligned_cols=83 Identities=13% Similarity=0.129 Sum_probs=60.5
Q ss_pred CCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcCeE
Q psy9122 64 RTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTL 143 (169)
Q Consensus 64 ~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~~ 143 (169)
-|-.||.+++.+.-..+.. .|-.+..+|.+.=|+ ..+-+.+=+.-+.+-++++|+++++.-.++..+|.+.+|+.+
T Consensus 115 ~Ty~eL~~~v~~lA~~L~~---~Gv~~gd~V~i~~~n-~~e~v~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~l 190 (655)
T PRK03584 115 LSWAELRRQVAALAAALRA---LGVGPGDRVAAYLPN-IPETVVAMLATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVL 190 (655)
T ss_pred EeHHHHHHHHHHHHHHHHH---cCCCCCCEEEEEcCC-CHHHHHHHHHHHHcCcEEEeeCCCCCHHHHHHHHHHcCCcEE
Confidence 4677888877776555542 355555677766553 223333455667888999999999999999999999999999
Q ss_pred EccCCCc
Q psy9122 144 VVPDCYT 150 (169)
Q Consensus 144 i~p~~y~ 150 (169)
|+...+.
T Consensus 191 i~~~~~~ 197 (655)
T PRK03584 191 IAVDGYR 197 (655)
T ss_pred EEccccc
Confidence 9877653
No 76
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=25.44 E-value=60 Score=24.10 Aligned_cols=33 Identities=9% Similarity=-0.004 Sum_probs=28.2
Q ss_pred CccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 44 SSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 44 nPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
+|+| ++.+++++..+...|.+++.+-+...|.+
T Consensus 42 ~Pmd---L~tI~~kl~~~~Y~s~~ef~~Dv~li~~N 74 (112)
T cd05528 42 QPMD---LQTILQKLDTHQYLTAKDFLKDIDLIVTN 74 (112)
T ss_pred CCCC---HHHHHHHHcCCCcCCHHHHHHHHHHHHHH
Confidence 5787 48888999999999999999988888765
No 77
>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional
Probab=25.03 E-value=1.4e+02 Score=26.07 Aligned_cols=83 Identities=14% Similarity=0.072 Sum_probs=57.6
Q ss_pred CCCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcCe
Q psy9122 63 TRTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPST 142 (169)
Q Consensus 63 ~~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~ 142 (169)
.-|-.+|.+++.+.-..+.. .|-.+...|.+.-+ -...-.++=|.-+...+.++|++++....++..+++..+|+.
T Consensus 27 ~~t~~~l~~~~~~~a~~l~~---~g~~~~~~v~~~~~-~~~~~~~~~~a~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (503)
T PRK04813 27 KLTYGQLKEDSDALAAFIDS---LKLPDKSPIIVFGH-MSPEMLATFLGAVKAGHAYIPVDVSSPAERIEMIIEVAKPSL 102 (503)
T ss_pred EEeHHHHHHHHHHHHHHHHH---hCCCCCCEEEEEcC-CCHHHHHHHHHHHHcCCEEecCCCCChHHHHHHHHHhcCCCE
Confidence 45777888777666555442 23333444444433 123333445667789999999999999999999999999999
Q ss_pred EEccCCC
Q psy9122 143 LVVPDCY 149 (169)
Q Consensus 143 ~i~p~~y 149 (169)
+++....
T Consensus 103 ~~~~~~~ 109 (503)
T PRK04813 103 IIATEEL 109 (503)
T ss_pred EEecccc
Confidence 9987654
No 78
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=24.47 E-value=67 Score=23.61 Aligned_cols=34 Identities=9% Similarity=0.129 Sum_probs=28.5
Q ss_pred CCccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 43 LSSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 43 LnPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
-+|+|+ +.++.++..+...+.+++.+-+...|.+
T Consensus 46 ~~P~dL---~tI~~kl~~~~Y~s~~ef~~D~~l~f~N 79 (106)
T cd05525 46 TDPVDL---STIEKQILTGYYKTPEAFDSDMLKVFRN 79 (106)
T ss_pred CCCcCH---HHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 468885 8889999999999999999888777654
No 79
>PF10996 Beta-Casp: Beta-Casp domain; InterPro: IPR022712 The beta-CASP domain is found C-terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease. The active site of this enzyme is located at the interface of these two domains []. ; PDB: 2YCB_B 2XR1_B 2I7T_A 2I7V_A 2I7X_A 3A4Y_A 3IE2_D 3IE1_B 3IE0_D 2DKF_D ....
Probab=23.67 E-value=55 Score=23.61 Aligned_cols=21 Identities=10% Similarity=-0.042 Sum_probs=14.9
Q ss_pred HHHHhhccCCceeEEeCCCCC
Q psy9122 82 QERLKTHHFKNRQVTLEPDFP 102 (169)
Q Consensus 82 ~e~l~g~~~~N~ii~~ep~~~ 102 (169)
...-+..+++|+|||+.+.-+
T Consensus 99 ~l~~~~~d~~n~Ii~~gy~~~ 119 (126)
T PF10996_consen 99 YLKRLASDPRNTIIFTGYQAP 119 (126)
T ss_dssp HHHHHTTSTTSEEEESSS--T
T ss_pred HHHHHcCCCCCeEEEecCCCC
Confidence 344566899999999988544
No 80
>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed
Probab=23.41 E-value=90 Score=28.04 Aligned_cols=83 Identities=13% Similarity=0.109 Sum_probs=58.0
Q ss_pred CCCCHHHHHHHHHHHHhhhhHHHHhhccCCceeEE-eCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCc
Q psy9122 62 KTRTLDELTGASYREIRAIAQERLKTHHFKNRQVT-LEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKP 140 (169)
Q Consensus 62 ~~~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~-~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P 140 (169)
+.-|-.||.+++.+.-..+.. .|-.+...|.+ ..+..+ -.++=+.-+..-+.++||++++.-.++..++.+.+|
T Consensus 54 ~~~Ty~el~~~~~~~a~~L~~---~g~~~g~~Val~~~n~~e--~~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~ 128 (547)
T PRK13295 54 RRFTYRELAALVDRVAVGLAR---LGVGRGDVVSCQLPNWWE--FTVLYLACSRIGAVLNPLMPIFRERELSFMLKHAES 128 (547)
T ss_pred ceeeHHHHHHHHHHHHHHHHH---hCCCCCCEEEEECCCChH--HHHHHHHHHhcCcEEeccccccCHHHHHHHHHhcCc
Confidence 345778888877766655543 23333344444 333332 233456667889999999999999999999999999
Q ss_pred CeEEccCCC
Q psy9122 141 STLVVPDCY 149 (169)
Q Consensus 141 ~~~i~p~~y 149 (169)
+.+|+...+
T Consensus 129 ~~li~~~~~ 137 (547)
T PRK13295 129 KVLVVPKTF 137 (547)
T ss_pred eEEEEeccc
Confidence 999987654
No 81
>PTZ00237 acetyl-CoA synthetase; Provisional
Probab=23.15 E-value=1.3e+02 Score=28.27 Aligned_cols=81 Identities=10% Similarity=0.104 Sum_probs=59.4
Q ss_pred CCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcCeE
Q psy9122 64 RTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTL 143 (169)
Q Consensus 64 ~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~~ 143 (169)
-|-.||.+++.+.-..+.. .|-.+..+|.+.=|+- .+-+++=+.-+.+-++++|+++.+.-.++...|++.+|+.|
T Consensus 93 ~Ty~eL~~~v~~lA~~L~~---~Gv~~GDrV~i~~~n~-~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~l 168 (647)
T PTZ00237 93 LTYYQLYEKVCEFSRVLLN---LNISKNDNVLIYMANT-LEPLIAMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLI 168 (647)
T ss_pred EEHHHHHHHHHHHHHHHHH---cCCCCCCEEEEECCCC-HHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEE
Confidence 4677888877777666642 3445556776666632 22233455667889999999999999999999999999999
Q ss_pred EccCC
Q psy9122 144 VVPDC 148 (169)
Q Consensus 144 i~p~~ 148 (169)
|+-..
T Consensus 169 i~~~~ 173 (647)
T PTZ00237 169 ITTNY 173 (647)
T ss_pred EEccc
Confidence 98653
No 82
>PRK06710 long-chain-fatty-acid--CoA ligase; Validated
Probab=23.12 E-value=1.6e+02 Score=26.45 Aligned_cols=82 Identities=9% Similarity=0.037 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcCeE
Q psy9122 64 RTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTL 143 (169)
Q Consensus 64 ~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~~ 143 (169)
-|-.+|.+++.+.-..+.. .|-....+|.+.=++ ..+-..+=|.-+..-+.++|+|++..-.++..+++...++.+
T Consensus 50 ~ty~eL~~~~~~la~~L~~---~gv~~gd~V~i~~~~-~~~~~~~~lA~~~~G~~~vpi~p~~~~~~l~~~l~~~~~~~i 125 (563)
T PRK06710 50 ITFSVFHDKVKRFANYLQK---LGVEKGDRVAIMLPN-CPQAVIGYYGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVI 125 (563)
T ss_pred ecHHHHHHHHHHHHHHHHH---cCCCCCCEEEEECCC-ChHHHHHHHHHHHcCeEEeccCcccCHHHHHHHHhccCCeEE
Confidence 4677887777665544432 233334555554442 222333445667888999999999999999999999999999
Q ss_pred EccCCC
Q psy9122 144 VVPDCY 149 (169)
Q Consensus 144 i~p~~y 149 (169)
++-+.+
T Consensus 126 i~~~~~ 131 (563)
T PRK06710 126 LCLDLV 131 (563)
T ss_pred EEeccc
Confidence 987654
No 83
>PRK09274 peptide synthase; Provisional
Probab=22.65 E-value=1.5e+02 Score=26.55 Aligned_cols=80 Identities=11% Similarity=0.107 Sum_probs=56.2
Q ss_pred CCCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcCe
Q psy9122 63 TRTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPST 142 (169)
Q Consensus 63 ~~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~ 142 (169)
.-|-.+|.+++.+.-..+.. .|-.+...|.+.=++ ..+-+.+=+.-+..-+.++||++++.-.++..++.+.+|+.
T Consensus 41 ~~Ty~~l~~~~~~~A~~L~~---~g~~~gd~V~~~~~n-~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 116 (552)
T PRK09274 41 ELSFAELDARSDAIAHGLNA---AGIGRGMRAVLMVTP-SLEFFALTFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDA 116 (552)
T ss_pred cccHHHHHHHHHHHHHHHHH---cCCCCCCEEEEEeCC-cHHHHHHHHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCE
Confidence 35778888877776665542 244445566554332 22223334555688899999999999999999999999999
Q ss_pred EEcc
Q psy9122 143 LVVP 146 (169)
Q Consensus 143 ~i~p 146 (169)
+|+-
T Consensus 117 ~i~~ 120 (552)
T PRK09274 117 FIGI 120 (552)
T ss_pred EEec
Confidence 9873
No 84
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase. This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=22.65 E-value=1.4e+02 Score=27.36 Aligned_cols=83 Identities=14% Similarity=0.068 Sum_probs=59.9
Q ss_pred CCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcCeE
Q psy9122 64 RTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTL 143 (169)
Q Consensus 64 ~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~~ 143 (169)
-|-.||.+++.+.-..+.. .|-.+..+|.+.=|+= .+-.++=+.-+.+-++++||++.+.-.++..++.+.+|+.+
T Consensus 89 ~Ty~eL~~~v~~lA~~L~~---~Gv~~gd~V~i~~~n~-~e~~~~~lA~~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~l 164 (625)
T TIGR02188 89 ITYRELHREVCRFANVLKS---LGVKKGDRVAIYMPMI-PEAAIAMLACARIGAIHSVVFGGFSAEALADRINDAGAKLV 164 (625)
T ss_pred EEHHHHHHHHHHHHHHHHH---cCCCCCCEEEEECCCC-HHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCCEE
Confidence 4667888877776665543 3445556666655522 23333445556888999999999999999999999999999
Q ss_pred EccCCCc
Q psy9122 144 VVPDCYT 150 (169)
Q Consensus 144 i~p~~y~ 150 (169)
|+...+.
T Consensus 165 i~~~~~~ 171 (625)
T TIGR02188 165 ITADEGL 171 (625)
T ss_pred EEcCccc
Confidence 9977654
No 85
>PRK10524 prpE propionyl-CoA synthetase; Provisional
Probab=22.61 E-value=1.5e+02 Score=27.28 Aligned_cols=82 Identities=17% Similarity=0.136 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcCeE
Q psy9122 64 RTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTL 143 (169)
Q Consensus 64 ~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~~ 143 (169)
-|-.||.+++.+.-..+.. .|-.+..+|.+.=|+- .+-+.+=+.-+.+-++++|+++.+.-.++...|.+.+|+.+
T Consensus 85 ~Ty~eL~~~v~~lA~~L~~---~Gv~~gd~V~i~~~n~-~e~~~~~lA~~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~l 160 (629)
T PRK10524 85 YTFRQLHDEVNRMAAMLRS---LGVQRGDRVLIYMPMI-AEAAFAMLACARIGAIHSVVFGGFASHSLAARIDDAKPVLI 160 (629)
T ss_pred EeHHHHHHHHHHHHHHHHH---cCCCCCCEEEEECCCC-HHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCcEE
Confidence 4678888877766655542 3556667777766631 22222445556788999999999999999999999999999
Q ss_pred EccCCC
Q psy9122 144 VVPDCY 149 (169)
Q Consensus 144 i~p~~y 149 (169)
|+...+
T Consensus 161 i~~~~~ 166 (629)
T PRK10524 161 VSADAG 166 (629)
T ss_pred EEccCc
Confidence 987654
No 86
>PRK13388 acyl-CoA synthetase; Provisional
Probab=22.46 E-value=1.4e+02 Score=26.94 Aligned_cols=82 Identities=12% Similarity=-0.107 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHHHHhhhhHHHHhhc-cCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcC
Q psy9122 63 TRTLDELTGASYREIRAIAQERLKTH-HFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPS 141 (169)
Q Consensus 63 ~~~ieeLk~aI~raw~sIs~e~l~g~-~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~ 141 (169)
.-|-.+|.+++.+.-..+.. .|- .+..+|.+.=+ -..+-..+=+.-+.+-+.++|||+.+.-.++..++.+.+|+
T Consensus 26 ~lTy~el~~~~~~la~~L~~---~g~~~~~~~V~i~~~-n~~~~v~~~lA~~~~Ga~~v~l~p~~~~~~l~~~l~~~~~~ 101 (540)
T PRK13388 26 TWTWREVLAEAAARAAALIA---LADPDRPLHVGVLLG-NTPEMLFWLAAAALGGYVLVGLNTTRRGAALAADIRRADCQ 101 (540)
T ss_pred eeeHHHHHHHHHHHHHHHHH---hcCCCCCCEEEEECC-CCcHHHHHHHHHHhCCCEEEEecccCChHHHHHHHHhcCCC
Confidence 34777888777666554442 233 22233333222 12222233345567888999999999999999999999999
Q ss_pred eEEccCC
Q psy9122 142 TLVVPDC 148 (169)
Q Consensus 142 ~~i~p~~ 148 (169)
.+|+...
T Consensus 102 ~~i~~~~ 108 (540)
T PRK13388 102 LLVTDAE 108 (540)
T ss_pred EEEEChh
Confidence 9998653
No 87
>TIGR02262 benz_CoA_lig benzoate-CoA ligase family. Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.
Probab=22.34 E-value=71 Score=28.23 Aligned_cols=82 Identities=15% Similarity=0.100 Sum_probs=54.8
Q ss_pred CCCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCccccc-CCCcccceeeeeeccccCcChhHHHHhhhhcCcC
Q psy9122 63 TRTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEAL-APFQPLAMKSIHCPIDTSLNFNQANKLIRELKPS 141 (169)
Q Consensus 63 ~~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~-~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~ 141 (169)
.-|-.+|.+++.+.-..+. -.|-.+...|.+.-++ ..+.+ +=+.-+.+.+..+|+|++++-.++..++.+.+|+
T Consensus 30 ~~ty~~l~~~~~~~a~~L~---~~g~~~g~~v~l~~~~--~~~~~~~~~a~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~ 104 (508)
T TIGR02262 30 SLSYGELEAQVRRLGAALR---RLGVKREERVLLLMLD--GVDFPIAFLGAIRAGIVPVALNTLLTADDYAYMLEDSRAR 104 (508)
T ss_pred eeeHHHHHHHHHHHHHHHH---HcCCCCCCEEEEECCC--CHHHHHHHHHHHHcCcEEeeccCCCCHHHHHHHHHhcCCe
Confidence 3466777776665544443 1244444555554432 22222 2344568899999999999999999999999999
Q ss_pred eEEccCCC
Q psy9122 142 TLVVPDCY 149 (169)
Q Consensus 142 ~~i~p~~y 149 (169)
.+|+...+
T Consensus 105 ~~i~~~~~ 112 (508)
T TIGR02262 105 VVFVSGEL 112 (508)
T ss_pred EEEEchhh
Confidence 99987643
No 88
>PLN03052 acetate--CoA ligase; Provisional
Probab=22.02 E-value=1.4e+02 Score=28.77 Aligned_cols=83 Identities=13% Similarity=0.074 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcCeE
Q psy9122 64 RTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTL 143 (169)
Q Consensus 64 ~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~~ 143 (169)
-|-.||.+++.+.-..+.. .|-.+..+|.+.=|+ ..+-+.+=+.-+.+-++++||++++.-.++..++.+.+|+.|
T Consensus 209 ~Ty~eL~~~v~~lA~~L~~---~Gv~~GdrVai~~pn-~~e~via~LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~l 284 (728)
T PLN03052 209 MTLSELRSQVSRVANALDA---LGFEKGDAIAIDMPM-NVHAVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAI 284 (728)
T ss_pred eeHHHHHHHHHHHHHHHHH---cCCCCCCEEEEEeCC-CHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEE
Confidence 4678888877776655542 355666777777663 222233445566888999999999999999999999999999
Q ss_pred EccCCCc
Q psy9122 144 VVPDCYT 150 (169)
Q Consensus 144 i~p~~y~ 150 (169)
|+-+.|.
T Consensus 285 it~d~~~ 291 (728)
T PLN03052 285 FTQDVIV 291 (728)
T ss_pred EEcCccc
Confidence 9987664
No 89
>TIGR01733 AA-adenyl-dom amino acid adenylation domain. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.
Probab=21.90 E-value=1.9e+02 Score=24.35 Aligned_cols=81 Identities=14% Similarity=0.090 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcCeEEcc
Q psy9122 67 DELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTLVVP 146 (169)
Q Consensus 67 eeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~~i~p 146 (169)
.+|.+.+.+.-..+.. ..|-.+...|.+.-|+= ..-..+=|.-+.+.+..+|++++..-.++..++++.+|+.+++-
T Consensus 3 ~~l~~~~~~~a~~l~~--~~g~~~gd~v~l~~~n~-~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~ 79 (408)
T TIGR01733 3 RELDERANRLARHLRA--AGGVGPGDRVAVLLERS-AELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTD 79 (408)
T ss_pred HHHHHHHHHHHHHHHH--hhCCCCCCEEEEEeCCC-HHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEc
Confidence 4555555544444432 12444445555544422 33333445556888999999999999999999999999999997
Q ss_pred CCCc
Q psy9122 147 DCYT 150 (169)
Q Consensus 147 ~~y~ 150 (169)
..+.
T Consensus 80 ~~~~ 83 (408)
T TIGR01733 80 SALA 83 (408)
T ss_pred Cchh
Confidence 6654
No 90
>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1. This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.
Probab=21.90 E-value=1.4e+02 Score=26.03 Aligned_cols=83 Identities=16% Similarity=0.127 Sum_probs=58.0
Q ss_pred CCCCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEe-CCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCc
Q psy9122 62 KTRTLDELTGASYREIRAIAQERLKTHHFKNRQVTL-EPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKP 140 (169)
Q Consensus 62 ~~~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~-ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P 140 (169)
..-|-.+|.+++.+.-..+.. .|-.+.+.|.+. +..+ .-+.+=|.-+...+.++|+++++...++..++...+|
T Consensus 24 ~~~ty~el~~~~~~~a~~L~~---~g~~~~~~V~i~~~~~~--~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~ 98 (502)
T TIGR01734 24 QELTYQQLKEQSDRLAAFIQK---RILPKKSPIIVYGHMEP--HMLVAFLGSIKSGHAYIPVDTSIPSERIEMIIEAAGP 98 (502)
T ss_pred cEEeHHHHHHHHHHHHHHHHH---hCCCCCCeEEEEeCCCH--HHHHHHHHHHHhCCEEeCCCCcChHHHHHHHHHhcCC
Confidence 345777888777766555542 234444455544 4433 3333445667888999999999999999999999999
Q ss_pred CeEEccCCC
Q psy9122 141 STLVVPDCY 149 (169)
Q Consensus 141 ~~~i~p~~y 149 (169)
+.+|+-..+
T Consensus 99 ~~ii~~~~~ 107 (502)
T TIGR01734 99 ELVIHTAEL 107 (502)
T ss_pred CEEEecccc
Confidence 999986543
No 91
>PRK07470 acyl-CoA synthetase; Validated
Probab=21.71 E-value=1.7e+02 Score=25.94 Aligned_cols=84 Identities=10% Similarity=0.067 Sum_probs=57.0
Q ss_pred CCCCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcC
Q psy9122 62 KTRTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPS 141 (169)
Q Consensus 62 ~~~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~ 141 (169)
..-|-.+|.+++.+.-..+.. .|-.+..+|.+.=+ -...-..+=+.-+...+.++|+++++.-.++..++++..|+
T Consensus 31 ~~~Ty~el~~~~~~~a~~L~~---~g~~~g~~v~i~~~-~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~ 106 (528)
T PRK07470 31 RSWTWREIDARVDALAAALAA---RGVRKGDRILVHSR-NCNQMFESMFAAFRLGAVWVPTNFRQTPDEVAYLAEASGAR 106 (528)
T ss_pred ccccHHHHHHHHHHHHHHHHH---hCCCCCCEEEEEcC-CCHHHHHHHHHHHhCCeEEEecCccCCHHHHHHHHHhcCce
Confidence 345778888877776665553 23333334433322 12223333355678889999999999999999999999999
Q ss_pred eEEccCCC
Q psy9122 142 TLVVPDCY 149 (169)
Q Consensus 142 ~~i~p~~y 149 (169)
.+++-..+
T Consensus 107 ~~i~~~~~ 114 (528)
T PRK07470 107 AMICHADF 114 (528)
T ss_pred EEEEcchh
Confidence 99987654
No 92
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=21.50 E-value=2.1e+02 Score=24.94 Aligned_cols=84 Identities=14% Similarity=0.023 Sum_probs=57.2
Q ss_pred CCCCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcC
Q psy9122 62 KTRTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPS 141 (169)
Q Consensus 62 ~~~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~ 141 (169)
..-|-.+|.+++.+.-..+... |-.+...|.+.-++ ...-..+=+.=+.+.+.++|+|+++.-.++..++.+.+++
T Consensus 27 ~~~ty~el~~~~~~~a~~L~~~---g~~~~~~v~l~~~~-~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~ 102 (458)
T PRK09029 27 EVLTWQQLCARIDQLAAGFAQQ---GVVEGSGVALRGKN-SPETLLAYLALLQCGARVLPLNPQLPQPLLEELLPSLTLD 102 (458)
T ss_pred cceeHHHHHHHHHHHHHHHHHc---CCCCCCEEEEecCC-CHHHHHHHHHHHHcCCEEeecCCCCCHHHHHHHHHhcCCC
Confidence 4457788888777765555432 33444445444331 2222223355568899999999999999999999999999
Q ss_pred eEEccCCC
Q psy9122 142 TLVVPDCY 149 (169)
Q Consensus 142 ~~i~p~~y 149 (169)
.+++....
T Consensus 103 ~~i~~~~~ 110 (458)
T PRK09029 103 FALVLEGE 110 (458)
T ss_pred EEEEcCcc
Confidence 99987654
No 93
>PRK05605 long-chain-fatty-acid--CoA ligase; Validated
Probab=21.46 E-value=1.2e+02 Score=27.40 Aligned_cols=82 Identities=13% Similarity=0.092 Sum_probs=56.0
Q ss_pred CCCCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcC
Q psy9122 62 KTRTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPS 141 (169)
Q Consensus 62 ~~~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~ 141 (169)
..-|-.+|.+++.+.-..+.. .|-.+..+|.+.=++ ..+-.++=+.-+.+-+..+|+++.++-.++..++++..++
T Consensus 56 ~~~Ty~ql~~~~~~~A~~L~~---~gi~~gd~V~l~~~n-~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~ 131 (573)
T PRK05605 56 ATTTYAELGKQVRRAAAGLRA---LGVRPGDRVAIVLPN-CPQHIVAFYAVLRLGAVVVEHNPLYTAHELEHPFEDHGAR 131 (573)
T ss_pred CcccHHHHHHHHHHHHHHHHH---hCCCCCCEEEEECCC-CHHHHHHHHHHHhcCcEEeecCcCCCHHHHHHHHhccCCc
Confidence 345678888877766555432 233334555554442 2223334456678889999999999999999999999999
Q ss_pred eEEccC
Q psy9122 142 TLVVPD 147 (169)
Q Consensus 142 ~~i~p~ 147 (169)
.+|+-.
T Consensus 132 ~ii~~~ 137 (573)
T PRK05605 132 VAIVWD 137 (573)
T ss_pred EEEech
Confidence 998733
No 94
>PRK08315 AMP-binding domain protein; Validated
Probab=21.40 E-value=1.6e+02 Score=26.20 Aligned_cols=80 Identities=13% Similarity=0.116 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcCeE
Q psy9122 64 RTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTL 143 (169)
Q Consensus 64 ~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~~ 143 (169)
-|-.+|.+++.+.-..+.. .|-.+...|.+.-++ ...-..+=+.-+.+-+.++|||+.....++.++++..+++.+
T Consensus 44 ~Ty~~l~~~~~~~a~~L~~---~gi~~g~~V~i~~~~-~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i 119 (559)
T PRK08315 44 WTYREFNEEVDALAKGLLA---LGIEKGDRVGIWAPN-VPEWVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKAL 119 (559)
T ss_pred EcHHHHHHHHHHHHHHHHH---cCCCCCCEEEEECCC-ChHHHHHHHHHHHhCeEEEecCccCCHHHHHHHHHhcCCCEE
Confidence 4778888777666555542 243444455443321 222233446667899999999999999999999999999998
Q ss_pred EccC
Q psy9122 144 VVPD 147 (169)
Q Consensus 144 i~p~ 147 (169)
|+-.
T Consensus 120 i~~~ 123 (559)
T PRK08315 120 IAAD 123 (559)
T ss_pred EEec
Confidence 8754
No 95
>PRK08276 long-chain-fatty-acid--CoA ligase; Validated
Probab=21.28 E-value=1.6e+02 Score=25.84 Aligned_cols=84 Identities=13% Similarity=0.018 Sum_probs=57.1
Q ss_pred CCCCCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCc
Q psy9122 61 YKTRTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKP 140 (169)
Q Consensus 61 ~~~~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P 140 (169)
...-+-.+|.+.+.+.-..+.. .|-.+...|.+.-++ ......+=+.-+..-+.++|+++.+.-.++..++++.+|
T Consensus 9 ~~~~ty~el~~~v~~~a~~L~~---~g~~~~~~V~i~~~~-~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~ 84 (502)
T PRK08276 9 GEVVTYGELEARSNRLAHGLRA---LGLREGDVVAILLEN-NPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGA 84 (502)
T ss_pred CcEEEHHHHHHHHHHHHHHHHH---hCCCCCCEEEEEeCC-CHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCC
Confidence 3445667777766666555543 344444555554331 233333345557889999999999999999999999999
Q ss_pred CeEEccCC
Q psy9122 141 STLVVPDC 148 (169)
Q Consensus 141 ~~~i~p~~ 148 (169)
+.+++...
T Consensus 85 ~~ii~~~~ 92 (502)
T PRK08276 85 KVLIVSAA 92 (502)
T ss_pred CEEEEccc
Confidence 99988653
No 96
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=21.25 E-value=81 Score=23.89 Aligned_cols=33 Identities=12% Similarity=0.123 Sum_probs=26.2
Q ss_pred CccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 44 SSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 44 nPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
+|+| ++.+++++..+...+.+++.+-+...|.+
T Consensus 67 ~Pmd---L~tI~~kl~~~~Y~s~~~f~~Dv~Li~~N 99 (128)
T cd05529 67 VPMD---LETIRSRLENRYYRSLEALRHDVRLILSN 99 (128)
T ss_pred CCCC---HHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 4777 37888888888899999999888777653
No 97
>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated
Probab=21.20 E-value=1.1e+02 Score=27.54 Aligned_cols=82 Identities=11% Similarity=0.047 Sum_probs=56.9
Q ss_pred CCCHHHHHHHHHHHHhhhhHHHHhhccCCceeEE-eCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcC
Q psy9122 63 TRTLDELTGASYREIRAIAQERLKTHHFKNRQVT-LEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPS 141 (169)
Q Consensus 63 ~~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~-~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~ 141 (169)
.-|-.+|.+++.+.-..+... |-.+..+|.+ .+.... -..+=|.-+.+-+..+|+++...-.++..++.+.+++
T Consensus 48 ~lTy~~l~~~~~~~a~~L~~~---gi~~gd~V~i~~~n~~~--~~~~~la~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~ 122 (557)
T PRK07059 48 AITYGELDELSRALAAWLQSR---GLAKGARVAIMMPNVLQ--YPVAIAAVLRAGYVVVNVNPLYTPRELEHQLKDSGAE 122 (557)
T ss_pred eeeHHHHHHHHHHHHHHHHHh---CCCCCCEEEEECCCCHH--HHHHHHHHHhcCeEEeccCcccCHHHHHHHHHccCce
Confidence 346678887777666555432 3333344433 333332 2333467788999999999999999999999999999
Q ss_pred eEEccCCC
Q psy9122 142 TLVVPDCY 149 (169)
Q Consensus 142 ~~i~p~~y 149 (169)
.+|+...+
T Consensus 123 ~vi~~~~~ 130 (557)
T PRK07059 123 AIVVLENF 130 (557)
T ss_pred EEEEchhh
Confidence 99986654
No 98
>PRK06164 acyl-CoA synthetase; Validated
Probab=21.19 E-value=1.1e+02 Score=27.34 Aligned_cols=82 Identities=12% Similarity=0.014 Sum_probs=57.1
Q ss_pred CCCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcCe
Q psy9122 63 TRTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPST 142 (169)
Q Consensus 63 ~~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~ 142 (169)
.-|-.+|.+++.+.-..+.. .|-.+...|.+.=++ ..+-+.+=|.-+.+.+..+||++.++-.++..++++.+|+.
T Consensus 35 ~~Ty~~L~~~~~~~a~~L~~---~g~~~g~~V~i~~~n-~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~ 110 (540)
T PRK06164 35 PLSRAELRALVDRLAAWLAA---QGVRRGDRVAVWLPN-CIEWVVLFLACARLGATVIAVNTRYRSHEVAHILGRGRARW 110 (540)
T ss_pred cccHHHHHHHHHHHHHHHHH---hCCCCCCEEEEEcCC-cHHHHHHHHHHHHhCcEEEecCCCCCcHHHHHHHHhcCccE
Confidence 45778888877777666652 233334444443331 22333344566788999999999999999999999999999
Q ss_pred EEccCC
Q psy9122 143 LVVPDC 148 (169)
Q Consensus 143 ~i~p~~ 148 (169)
+|+...
T Consensus 111 ii~~~~ 116 (540)
T PRK06164 111 LVVWPG 116 (540)
T ss_pred EEEccc
Confidence 998654
No 99
>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated
Probab=20.64 E-value=89 Score=28.28 Aligned_cols=78 Identities=10% Similarity=0.064 Sum_probs=54.9
Q ss_pred CCCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCC-CCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcC
Q psy9122 63 TRTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEP-DFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPS 141 (169)
Q Consensus 63 ~~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep-~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~ 141 (169)
.-|-.||.+++.+.-..+.. . +..+|.+.=| ...+- .+=|.-+.+-++++||+++..-.++..+|.+.+++
T Consensus 45 ~~Ty~el~~~~~~lA~~L~~--~----~gd~Val~~~n~~e~~--~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~ 116 (539)
T PRK06334 45 KLSYNQVRKAVIALATKVSK--Y----PDQHIGIMMPASAGAY--IAYFATLLSGKIPVMINWSQGLREVTACANLVGVT 116 (539)
T ss_pred cccHHHHHHHHHHHHHHHhh--c----cCCeEEEEcCCchHHH--HHHHHHHhcCCeeEecCcccchHHHHHHHHHcCCC
Confidence 34778888877776665543 1 2334444333 22222 23466678889999999999999999999999999
Q ss_pred eEEccCC
Q psy9122 142 TLVVPDC 148 (169)
Q Consensus 142 ~~i~p~~ 148 (169)
.+|+...
T Consensus 117 ~ii~~~~ 123 (539)
T PRK06334 117 HVLTSKQ 123 (539)
T ss_pred EEEehHH
Confidence 9998653
No 100
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated
Probab=20.54 E-value=1.8e+02 Score=25.69 Aligned_cols=82 Identities=15% Similarity=0.150 Sum_probs=55.6
Q ss_pred CCCHHHHHHHHHHHHhhhhHHHHhhccCCceeEE-eCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcC
Q psy9122 63 TRTLDELTGASYREIRAIAQERLKTHHFKNRQVT-LEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPS 141 (169)
Q Consensus 63 ~~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~-~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~ 141 (169)
.-|-.+|.+++.+.-..+.. .|-.+...+.+ ....+.+- ++=+.-+.+-+.++|++++.+..++..++.+..++
T Consensus 37 ~~ty~~l~~~v~~la~~L~~---~g~~~~~~v~i~~~n~~~~~--~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~ 111 (517)
T PRK08008 37 RYSYLELNEEINRTANLFYS---LGIRKGDKVALHLDNCPEFI--FCWFGLAKIGAIMVPINARLLREESAWILQNSQAS 111 (517)
T ss_pred eeeHHHHHHHHHHHHHHHHH---cCCCCCCEEEEEcCCCHHHH--HHHHHHHHcCeEEEEcCcccCHHHHHHHHHhcCce
Confidence 34667777777666555542 23333344444 33333322 23345567788999999999999999999999999
Q ss_pred eEEccCCC
Q psy9122 142 TLVVPDCY 149 (169)
Q Consensus 142 ~~i~p~~y 149 (169)
.+|+...+
T Consensus 112 ~l~~~~~~ 119 (517)
T PRK08008 112 LLVTSAQF 119 (517)
T ss_pred EEEEecch
Confidence 99987764
No 101
>PRK05677 long-chain-fatty-acid--CoA ligase; Validated
Probab=20.48 E-value=1.7e+02 Score=26.49 Aligned_cols=81 Identities=16% Similarity=0.048 Sum_probs=55.3
Q ss_pred CCCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcCe
Q psy9122 63 TRTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPST 142 (169)
Q Consensus 63 ~~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~ 142 (169)
.-|-.+|.+++.+.-..+.. ..|-.+..+|.+.=++ ..+-..+=|.-+..-+.++|||++.+-.++..++.+..|+.
T Consensus 49 ~~Ty~el~~~~~~la~~L~~--~~gi~~gd~Vai~~~n-~~~~~~~~la~~~~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ 125 (562)
T PRK05677 49 TLTYGELYKLSGAFAAWLQQ--HTDLKPGDRIAVQLPN-VLQYPVAVFGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKA 125 (562)
T ss_pred eeeHHHHHHHHHHHHHHHHH--hcCCCCCCEEEEECCC-CHHHHHHHHHHHHcCeEEeecCCCCCHHHHHHHHhccCceE
Confidence 45778888777665554431 1133334555554332 23333345666789999999999999999999999999999
Q ss_pred EEcc
Q psy9122 143 LVVP 146 (169)
Q Consensus 143 ~i~p 146 (169)
+|+-
T Consensus 126 ii~~ 129 (562)
T PRK05677 126 LVCL 129 (562)
T ss_pred EEEe
Confidence 9874
No 102
>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional
Probab=20.10 E-value=1.2e+02 Score=26.79 Aligned_cols=85 Identities=13% Similarity=0.167 Sum_probs=55.9
Q ss_pred cCCCCCHHHHHHHHHHHHhhhhHHHHhhccCCceeEE-eCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhc
Q psy9122 60 IYKTRTLDELTGASYREIRAIAQERLKTHHFKNRQVT-LEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIREL 138 (169)
Q Consensus 60 ~~~~~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~-~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l 138 (169)
+.+.-|-.+|.+++.+.-..+.. .|-.+...|.+ .+++. +-..+=+.-+..-+.++||++.....++..++.+.
T Consensus 8 ~~~~~Ty~el~~~~~~la~~l~~---~g~~~g~~V~v~~~~~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~ 82 (509)
T PRK12406 8 GDRRRSFDELAQRAARAAGGLAA---LGVRPGDCVALLMRNDF--AFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDS 82 (509)
T ss_pred CCeeecHHHHHHHHHHHHHHHHH---cCCCCCCEEEEEcCCCH--HHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhcc
Confidence 33445777887776666554432 22223334433 33322 22233455568889999999999999999999999
Q ss_pred CcCeEEccCCC
Q psy9122 139 KPSTLVVPDCY 149 (169)
Q Consensus 139 ~P~~~i~p~~y 149 (169)
+|+.+++....
T Consensus 83 ~~~~i~~~~~~ 93 (509)
T PRK12406 83 GARVLIAHADL 93 (509)
T ss_pred CCcEEEEccch
Confidence 99999876543
Done!