Query psy9122
Match_columns 169
No_of_seqs 178 out of 633
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 19:29:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9122.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9122hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f7t_A MOS1 transposase; RNAse 99.7 1.1E-17 3.7E-22 135.2 1.9 77 10-86 127-205 (227)
2 3f2k_A Histone-lysine N-methyl 99.7 9E-18 3.1E-22 136.5 0.2 77 10-86 126-204 (226)
3 3hot_A Transposable element ma 99.5 3.5E-15 1.2E-19 125.3 2.3 77 10-86 245-323 (345)
4 2i7t_A Cleavage and polyadenyl 88.4 1 3.4E-05 39.1 6.7 63 82-146 340-417 (459)
5 3ipl_A 2-succinylbenzoate--COA 47.0 16 0.00054 31.1 3.8 81 63-150 26-106 (501)
6 3ivr_A Putative long-chain-fat 45.7 14 0.00048 31.6 3.2 83 63-149 31-113 (509)
7 2d1s_A Luciferase, luciferin 4 43.4 24 0.00082 30.6 4.4 83 63-149 52-134 (548)
8 4fuq_A Malonyl COA synthetase; 41.5 21 0.00071 30.6 3.7 83 63-149 28-110 (503)
9 3l8c_A D-alanine--poly(phospho 40.5 18 0.00061 30.9 3.1 83 64-150 30-112 (521)
10 1v25_A Long-chain-fatty-acid-C 38.9 25 0.00084 30.5 3.8 82 64-149 48-129 (541)
11 3rix_A Luciferase, luciferin 4 38.6 31 0.0011 29.8 4.3 82 64-149 51-132 (550)
12 3g7s_A Long-chain-fatty-acid-- 38.3 24 0.0008 30.6 3.5 82 64-149 53-134 (549)
13 3ni2_A 4-coumarate:COA ligase; 37.4 19 0.00067 31.0 2.9 82 64-149 50-131 (536)
14 3e7w_A D-alanine--poly(phospho 35.6 16 0.00055 31.3 2.0 84 63-149 26-109 (511)
15 3r44_A Fatty acyl COA syntheta 35.6 27 0.00092 30.0 3.5 82 64-149 44-125 (517)
16 2v7b_A Benzoate-coenzyme A lig 33.2 31 0.0011 29.5 3.5 83 63-149 48-130 (529)
17 4gr5_A Non-ribosomal peptide s 32.5 40 0.0014 29.3 4.1 84 63-150 100-183 (570)
18 3nyq_A Malonyl-COA ligase; A/B 32.2 28 0.00094 29.9 2.9 79 62-149 47-125 (505)
19 1bco_A MUA domain II, bacterio 32.1 35 0.0012 27.8 3.5 52 25-77 117-197 (327)
20 1c6v_A Protein (SIV integrase) 32.1 14 0.00047 26.0 0.8 63 13-77 66-131 (164)
21 2i7k_A Bromodomain-containing 31.9 26 0.00088 25.0 2.3 34 43-79 46-79 (117)
22 3o83_A Peptide arylation enzym 30.9 36 0.0012 29.4 3.5 83 63-149 55-137 (544)
23 2dat_A Possible global transcr 30.8 27 0.00094 24.9 2.3 33 44-79 58-90 (123)
24 1t5h_X 4-chlorobenzoyl COA lig 30.2 38 0.0013 28.9 3.5 78 64-145 30-107 (504)
25 1amu_A GRSA, gramicidin synthe 30.1 42 0.0014 29.3 3.8 82 63-148 64-145 (563)
26 3d7c_A General control of amin 29.9 28 0.00097 24.3 2.2 34 43-79 45-78 (112)
27 3fce_A D-alanine--poly(phospho 29.8 31 0.0011 29.4 2.8 82 64-149 27-108 (512)
28 3jvl_A Bromodomain-containing 29.2 29 0.001 24.5 2.2 33 44-79 53-85 (120)
29 3etc_A AMP-binding protein; ad 28.3 46 0.0016 29.2 3.8 82 64-149 87-168 (580)
30 3c5e_A Acyl-coenzyme A synthet 28.2 40 0.0014 29.5 3.3 83 64-149 74-156 (570)
31 2grc_A Probable global transcr 28.0 31 0.0011 24.9 2.2 33 44-79 57-89 (129)
32 2ycb_A Beta-CAsp RNAse, cleava 27.6 1.1E+02 0.0039 27.5 6.4 60 86-145 522-601 (636)
33 2d9e_A Peregrin; four-helix bu 27.2 33 0.0011 24.5 2.2 34 43-79 45-78 (121)
34 2ouo_A HUNK1 protein, bromodom 27.2 32 0.0011 24.9 2.2 33 44-79 66-98 (130)
35 1e6i_A Transcriptional activat 27.0 33 0.0011 24.5 2.2 34 43-79 51-84 (121)
36 1ry2_A Acetyl-coenzyme A synth 27.0 42 0.0014 30.1 3.3 84 64-150 114-197 (663)
37 1pg4_A Acetyl-COA synthetase; 26.9 43 0.0015 29.9 3.3 82 64-149 108-189 (652)
38 1mdb_A 2,3-dihydroxybenzoate-A 26.5 44 0.0015 28.8 3.2 83 63-149 50-132 (539)
39 2oss_A HUNK1 protein, bromodom 26.3 34 0.0012 24.6 2.2 33 44-79 62-94 (127)
40 3iu5_A Protein polybromo-1; PB 26.1 36 0.0012 23.9 2.2 34 43-79 49-82 (116)
41 3nxb_A CAT eye syndrome critic 26.0 35 0.0012 23.9 2.2 33 44-79 55-87 (116)
42 3ite_A SIDN siderophore synthe 25.9 43 0.0015 28.9 3.1 81 64-149 56-136 (562)
43 3g0l_A Hwalp4, bromodomain adj 25.0 39 0.0013 23.7 2.2 33 44-79 52-84 (117)
44 2ro1_A Transcription intermedi 24.9 38 0.0013 26.1 2.3 34 44-80 113-149 (189)
45 3mb4_A Protein polybromo-1; PB 24.7 39 0.0013 24.1 2.2 33 44-79 60-92 (124)
46 3gqw_A Fatty acid AMP ligase; 24.5 51 0.0017 28.2 3.2 82 64-149 50-138 (576)
47 3hme_A Bromodomain-containing 24.4 40 0.0014 24.1 2.2 33 44-79 52-84 (123)
48 3tsy_A Fusion protein 4-coumar 23.9 46 0.0016 31.1 3.1 83 64-150 89-171 (979)
49 3ecd_A Serine hydroxymethyltra 23.6 1.2E+02 0.0042 24.3 5.3 58 89-146 116-179 (425)
50 3p1f_A CREB-binding protein; s 23.2 43 0.0015 23.6 2.2 33 44-79 53-85 (119)
51 3rcw_A Bromodomain-containing 22.8 43 0.0015 24.1 2.2 33 44-79 52-84 (135)
52 3k2j_A Protein polybromo-1; PB 22.8 44 0.0015 24.2 2.2 33 44-79 62-94 (130)
53 3mqm_A Probable histone-lysine 22.6 40 0.0014 24.0 1.9 33 44-79 54-86 (126)
54 3mb3_A PH-interacting protein; 22.2 45 0.0015 24.0 2.2 33 44-79 60-92 (135)
55 3ljw_A Protein polybromo-1; al 22.0 42 0.0014 23.8 1.9 34 43-79 52-85 (120)
56 2ri7_A Nucleosome-remodeling f 22.0 42 0.0014 25.0 2.0 33 44-79 111-143 (174)
57 3q2e_A Bromodomain and WD repe 21.5 48 0.0017 23.5 2.2 33 44-79 49-81 (123)
58 3ou5_A Serine hydroxymethyltra 21.2 44 0.0015 30.1 2.2 34 115-148 176-212 (490)
59 4alg_A Bromodomain-containing 20.7 50 0.0017 24.6 2.2 34 43-79 72-105 (154)
60 3tlp_A Protein polybromo-1; PB 20.7 50 0.0017 24.2 2.2 33 44-79 70-102 (150)
61 3euc_A Histidinol-phosphate am 20.6 1.2E+02 0.0041 24.0 4.6 81 64-146 67-164 (367)
62 3dai_A ATPase family AAA domai 20.6 52 0.0018 23.6 2.2 33 44-79 49-81 (130)
63 3iu6_A Protein polybromo-1; PB 20.2 78 0.0027 23.9 3.2 41 35-78 36-79 (147)
No 1
>2f7t_A MOS1 transposase; RNAse-H like fold, DDD motif, DNA binding protein; 2.25A {Drosophila mauritiana}
Probab=99.66 E-value=1.1e-17 Score=135.16 Aligned_cols=77 Identities=13% Similarity=0.097 Sum_probs=71.3
Q ss_pred hhhhhcccccchhhhHHHHhcCC--cccCCCCCCCCCccccccccccccccccCCCCCHHHHHHHHHHHHhhhhHHHHh
Q psy9122 10 SLIASTASSNGQSKIEEVLQFCT--HFDFPPSSPDLSSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRAIAQERLK 86 (169)
Q Consensus 10 ~~~~~~a~~~~~~~~~~wi~r~~--~~~WPp~SPDLnPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~sIs~e~l~ 86 (169)
-+.+++|+.|+++.+++|+...+ .+.|||||||||||||++|+.||+.++++.+.|.++|++++.++|++++.+++.
T Consensus 127 ~~~~Dna~~H~~~~~~~~~~~~~~~~~~~p~ysPdlnpie~~~w~~lk~~l~~~~~~~~~~l~~~i~~~~~~~~~~~~~ 205 (227)
T 2f7t_A 127 IFLHDNAPSHTARAVRDTLETLNWEVLPHAAYSPDLAPSDYHLFASMGHALAEQRFDSYESVKKWLDEWFAAKDDEFYW 205 (227)
T ss_dssp EEECCCCGGGGSHHHHHHHHHHTCEECCCCTTCGGGCHHHHTHHHHHHHHHHTCCBCSHHHHHHHHHHHHHHSCHHHHH
T ss_pred EEEECCCchhhhHHHHHHHHHhCcccccCCCCCCCcCcccchhhHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHH
Confidence 47899999999999999998765 578999999999999889999999999999999999999999999999987765
No 2
>3f2k_A Histone-lysine N-methyltransferase setmar; histone-lysine N-methyltransferase setmar, SET domain and mariner transposase fusion; 1.85A {Homo sapiens} PDB: 3k9k_A 3k9j_A
Probab=99.65 E-value=9e-18 Score=136.49 Aligned_cols=77 Identities=16% Similarity=0.122 Sum_probs=71.4
Q ss_pred hhhhhcccccchhhhHHHHhcCC--cccCCCCCCCCCccccccccccccccccCCCCCHHHHHHHHHHHHhhhhHHHHh
Q psy9122 10 SLIASTASSNGQSKIEEVLQFCT--HFDFPPSSPDLSSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRAIAQERLK 86 (169)
Q Consensus 10 ~~~~~~a~~~~~~~~~~wi~r~~--~~~WPp~SPDLnPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~sIs~e~l~ 86 (169)
-+++++|+.|+++.+++|+...+ .+.|||||||||||||++|+.||+.++++.+.|.++|++++.++|++++.+++.
T Consensus 126 i~~~Dna~~H~~~~~~~~l~~~~~~~~~~P~ySPdlnpie~~~w~~lk~~l~~~~~~~~~~l~~~i~~~~~~~~~~~~~ 204 (226)
T 3f2k_A 126 ILLHDNARPHVAQPTLQKLNELGYEVLPHPPYSPDLLPTNYHVFKHLNNFLQGKRFHNQQDAENAFQEFVESQSTDFYA 204 (226)
T ss_dssp EEECCCCHHHHSTTHHHHHHHHTCEECCCCTTCGGGCHHHHTHHHHHHHHHTTCBCSSHHHHHHHHHHHHHTSCTTHHH
T ss_pred EEEeCCCccchhhhHHHHHHhhcceeecCCCCCCCcchHHHHHHHHHHHHHHhcCCccHHHHHHHHHhHHhhcCcHHHH
Confidence 37889999999999999999876 479999999999999889999999999999999999999999999999987765
No 3
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=99.50 E-value=3.5e-15 Score=125.29 Aligned_cols=77 Identities=13% Similarity=0.097 Sum_probs=71.6
Q ss_pred hhhhhcccccchhhhHHHHhcCC--cccCCCCCCCCCccccccccccccccccCCCCCHHHHHHHHHHHHhhhhHHHHh
Q psy9122 10 SLIASTASSNGQSKIEEVLQFCT--HFDFPPSSPDLSSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRAIAQERLK 86 (169)
Q Consensus 10 ~~~~~~a~~~~~~~~~~wi~r~~--~~~WPp~SPDLnPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~sIs~e~l~ 86 (169)
.+.+++|+.|+...+.+|+...| .+.|||||||||||||++|+.||+.++++.+.|.++|++++.++|.+++.+++.
T Consensus 245 ~~~~Dna~~h~~~~~~~~l~~~~~~~~~~p~~spdlnpie~~~~~~lk~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~ 323 (345)
T 3hot_A 245 IFLHDNAPSHTARAVRDTLETLNWEVLPHAAYSPDLAPSDYHLFASMGHALAEQRFDSYESVKKWLDEWFAAKDDEFYW 323 (345)
T ss_dssp EEECCCCTTTTSHHHHHHHHHTTCEECCCCTTCGGGCHHHHTHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHSCSHHHH
T ss_pred EEEECCCCccccHHHHHHHHHcCcEeccCCCCCCCcccccchhhHHHHHHhccccCCCHHHHHHHHHHHHHHhhHHHHH
Confidence 47889999999999999999987 478999999999999889999999999999999999999999999999987765
No 4
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A
Probab=88.38 E-value=1 Score=39.07 Aligned_cols=63 Identities=17% Similarity=0.187 Sum_probs=47.8
Q ss_pred HHHHhhccCCceeEEeCCCCCccccc---------------CCCcccceeeeeeccccCcChhHHHHhhhhcCcCeEEcc
Q psy9122 82 QERLKTHHFKNRQVTLEPDFPYVEAL---------------APFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTLVVP 146 (169)
Q Consensus 82 ~e~l~g~~~~N~ii~~ep~~~~~~~~---------------~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~~i~p 146 (169)
....|..+++|+|+|+..... ..+ .-..++.+++..++..-.-|+.++.++|+.++|+++++.
T Consensus 340 ~l~~~~~~~~~~ii~~gy~~~--gt~g~~l~~~~~~~~~~~g~~~~~~~~v~~~~~S~Had~~~l~~~i~~~~p~~v~~v 417 (459)
T 2i7t_A 340 LFESWCTDKRNGVIIAGYCVE--GTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILV 417 (459)
T ss_dssp HHHHHTTCTTCEEEECSCCCT--TSHHHHHTTCCSEEECTTSCEEECCSEEEECCCSCCCCHHHHHHHHHHHCCSEEEEE
T ss_pred HHHHHcCCCCCeEEEEecCCC--CChHHHHhhCCceeeeeCCcEEEEEEEEEEeeecccCCHHHHHHHHHhcCCCeEEEe
Confidence 345567889999999765443 322 123346788888888777999999999999999998874
No 5
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=47.01 E-value=16 Score=31.11 Aligned_cols=81 Identities=10% Similarity=-0.012 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcCe
Q psy9122 63 TRTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPST 142 (169)
Q Consensus 63 ~~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~ 142 (169)
.-|-.||.+++.+.-..+... +...|.+.-++ ..+-..+=|.-+..-+.++|||+++.-.++..++.+.+|+.
T Consensus 26 ~~Ty~eL~~~~~~lA~~L~~~------~gd~V~i~~~n-~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ 98 (501)
T 3ipl_A 26 SYTYQNLYCEASLLAKRLKAY------QQSRVGLYIDN-SIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQL 98 (501)
T ss_dssp EEEHHHHHHHHHHHHHHHHTT------CCSEEEEECCS-SHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHTTCCE
T ss_pred EEEHHHHHHHHHHHHHHHHHc------CCCEEEEEcCC-CHHHHHHHHHHHHcCCEEEecCccCCHHHHHHHHHhcCCCE
Confidence 346788888777665555432 33455555442 23333345666788899999999999999999999999999
Q ss_pred EEccCCCc
Q psy9122 143 LVVPDCYT 150 (169)
Q Consensus 143 ~i~p~~y~ 150 (169)
+|+...+.
T Consensus 99 li~~~~~~ 106 (501)
T 3ipl_A 99 IFCTLPLE 106 (501)
T ss_dssp EEESSCCC
T ss_pred EEEccccc
Confidence 99987654
No 6
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=45.73 E-value=14 Score=31.60 Aligned_cols=83 Identities=16% Similarity=0.106 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcCe
Q psy9122 63 TRTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPST 142 (169)
Q Consensus 63 ~~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~ 142 (169)
.-|-.||.+++.+.-..+.. .|-.+...|.+.-++ ..+-..+=|.-+..-+.++|||+++.-.++..++.+.+|+.
T Consensus 31 ~~Ty~eL~~~~~~lA~~L~~---~Gv~~gd~V~i~~~~-~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~ 106 (509)
T 3ivr_A 31 RLTHRDYLARAERLASGLLR---DGVHTGDRVAILSQN-CSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSV 106 (509)
T ss_dssp EEEHHHHHHHHHHHHHHHHH---TTCCTTCEEEEECCS-CHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEE
T ss_pred EEcHHHHHHHHHHHHHHHHH---cCCCCCCEEEEEcCC-CHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceE
Confidence 35778888887777665542 355556667665553 23333345666788899999999999999999999999999
Q ss_pred EEccCCC
Q psy9122 143 LVVPDCY 149 (169)
Q Consensus 143 ~i~p~~y 149 (169)
+|+...+
T Consensus 107 vi~~~~~ 113 (509)
T 3ivr_A 107 VVAGTDY 113 (509)
T ss_dssp EEECSTT
T ss_pred EEECcch
Confidence 9987654
No 7
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=43.39 E-value=24 Score=30.64 Aligned_cols=83 Identities=10% Similarity=-0.027 Sum_probs=58.9
Q ss_pred CCCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcCe
Q psy9122 63 TRTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPST 142 (169)
Q Consensus 63 ~~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~ 142 (169)
.-|-.||.+++.+.-..+.. .|-.+...|.+.-++= .+-..+=|.-+..-+.++||++++.-.++..++++.+|+.
T Consensus 52 ~~Ty~el~~~~~~lA~~L~~---~Gv~~gd~V~i~~~n~-~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ 127 (548)
T 2d1s_A 52 DYSYAEYLEKSCCLGKALQN---YGLVVDGRIALCSENC-EEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTI 127 (548)
T ss_dssp EEEHHHHHHHHHHHHHHHHH---HTCCTTCEEEEECSSC-TTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSE
T ss_pred EeeHHHHHHHHHHHHHHHHH---cCCCCCCEEEEEeCCc-hhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeE
Confidence 34778888877777665542 4545556666554421 1222234566678899999999999999999999999999
Q ss_pred EEccCCC
Q psy9122 143 LVVPDCY 149 (169)
Q Consensus 143 ~i~p~~y 149 (169)
+|+...+
T Consensus 128 vi~~~~~ 134 (548)
T 2d1s_A 128 VFSSKKG 134 (548)
T ss_dssp EEECTTT
T ss_pred EEEcHHH
Confidence 9986543
No 8
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=41.51 E-value=21 Score=30.62 Aligned_cols=83 Identities=11% Similarity=0.185 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcCe
Q psy9122 63 TRTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPST 142 (169)
Q Consensus 63 ~~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~ 142 (169)
.-|-.||.+++.+.-..+.. .|-.+...|.+.-++ ..+-..+=|.-+..-+.++|||+++.-..+..++.+.+|+.
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~---~Gv~~gd~V~i~~~~-~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~ 103 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVA---RGLQVGDRVAAQTEK-SVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKI 103 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHH---TTCCTTCEEEEECCS-CHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSE
T ss_pred EEEHHHHHHHHHHHHHHHHH---cCCCCCCEEEEECCC-CHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcE
Confidence 34778888877776665542 355555666655442 23333345666788899999999999999999999999999
Q ss_pred EEccCCC
Q psy9122 143 LVVPDCY 149 (169)
Q Consensus 143 ~i~p~~y 149 (169)
+|+...+
T Consensus 104 vi~~~~~ 110 (503)
T 4fuq_A 104 VVCDPSK 110 (503)
T ss_dssp EEECGGG
T ss_pred EEECchh
Confidence 9987644
No 9
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=40.53 E-value=18 Score=30.94 Aligned_cols=83 Identities=16% Similarity=0.098 Sum_probs=59.1
Q ss_pred CCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcCeE
Q psy9122 64 RTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTL 143 (169)
Q Consensus 64 ~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~~ 143 (169)
-|-.||.+++.+.-..+.. .|-.+..+|.+.-++ ..+-..+=|.-+.+-+.++|||+++.-.++..++.+.+|+.+
T Consensus 30 ~Ty~el~~~~~~lA~~L~~---~g~~~gd~V~i~~~n-~~~~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~i 105 (521)
T 3l8c_A 30 RTYGQLKRDSDSIAAFIDS---LALLAKSPVLVFGAQ-TYDMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLI 105 (521)
T ss_dssp EEHHHHHHHHHHHHHHHHH---TCCCTTCCEEEEECS-SHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEE
T ss_pred ecHHHHHHHHHHHHHHHHH---cCCCCCCEEEEEeCC-CHHHHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEE
Confidence 3678888877776665542 344444555554442 223333446667888999999999999999999999999999
Q ss_pred EccCCCc
Q psy9122 144 VVPDCYT 150 (169)
Q Consensus 144 i~p~~y~ 150 (169)
|+-..+.
T Consensus 106 i~~~~~~ 112 (521)
T 3l8c_A 106 IAIEEFP 112 (521)
T ss_dssp EESSCCC
T ss_pred EecCccc
Confidence 9877653
No 10
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=38.94 E-value=25 Score=30.46 Aligned_cols=82 Identities=13% Similarity=0.109 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcCeE
Q psy9122 64 RTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTL 143 (169)
Q Consensus 64 ~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~~ 143 (169)
-|-.||.+++.+.-..+.. .|-.+..+|.+.-++ ..+-..+=|.-+.+-+.++||++++.-.++..++++.+|+.+
T Consensus 48 ~Ty~el~~~~~~lA~~L~~---~Gv~~gd~V~i~~~n-~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~v 123 (541)
T 1v25_A 48 TTYAEVYQRARRLMGGLRA---LGVGVGDRVATLGFN-HFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVL 123 (541)
T ss_dssp EEHHHHHHHHHHHHHHHHH---TTCCTTCEEEEECCS-SHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEE
T ss_pred ecHHHHHHHHHHHHHHHHH---cCCCCCCEEEEEcCC-cHHHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhCCCcEE
Confidence 4678888877776665542 454555666665442 222233445667888999999999999999999999999999
Q ss_pred EccCCC
Q psy9122 144 VVPDCY 149 (169)
Q Consensus 144 i~p~~y 149 (169)
|+...+
T Consensus 124 i~~~~~ 129 (541)
T 1v25_A 124 LFDPNL 129 (541)
T ss_dssp EECGGG
T ss_pred EEChhH
Confidence 987544
No 11
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=38.56 E-value=31 Score=29.85 Aligned_cols=82 Identities=15% Similarity=0.060 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcCeE
Q psy9122 64 RTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTL 143 (169)
Q Consensus 64 ~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~~ 143 (169)
-|-.||.+++.+.-..+.. .|-.+...|.+.-++= .+-..+=|.-+.+-+.++|||+++.-.++..++.+.+|+.+
T Consensus 51 ~Ty~el~~~~~~lA~~L~~---~Gv~~gd~V~i~~~n~-~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~v 126 (550)
T 3rix_A 51 ITYAEYFEMSVRLAEAMKR---YGLNTNHRIVVCSENS-LQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVV 126 (550)
T ss_dssp EEHHHHHHHHHHHHHHHHH---HTCCTTCEEEEECSSC-TTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEE
T ss_pred eEHHHHHHHHHHHHHHHHH---hCCCCCCEEEEEcCCc-ccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEE
Confidence 4678888888777666553 3555556666655521 22223445667788999999999999999999999999999
Q ss_pred EccCCC
Q psy9122 144 VVPDCY 149 (169)
Q Consensus 144 i~p~~y 149 (169)
|+...+
T Consensus 127 i~~~~~ 132 (550)
T 3rix_A 127 FVSKKG 132 (550)
T ss_dssp EECGGG
T ss_pred EEcHHH
Confidence 987643
No 12
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=38.32 E-value=24 Score=30.60 Aligned_cols=82 Identities=12% Similarity=0.139 Sum_probs=59.8
Q ss_pred CCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcCeE
Q psy9122 64 RTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTL 143 (169)
Q Consensus 64 ~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~~ 143 (169)
-|-.||.+++.+.-..+.. .|-.+...|.+.=++ ..+-+.+=|.-+.+-+.++|||+++.-..+..++.+.+|+.+
T Consensus 53 ~Ty~el~~~~~~lA~~L~~---~Gv~~gd~V~i~~~~-~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~ 128 (549)
T 3g7s_A 53 MNFLEICEVTKKLASGISR---KGVRKGEHVGVCIPN-SIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTL 128 (549)
T ss_dssp EEHHHHHHHHHHHHHHHHH---TTCCTTCEEEEECCS-SHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEE
T ss_pred eeHHHHHHHHHHHHHHHHH---cCCCCCCEEEEECCC-CHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEE
Confidence 4778888888777666542 355555666555442 233333456667888999999999999999999999999999
Q ss_pred EccCCC
Q psy9122 144 VVPDCY 149 (169)
Q Consensus 144 i~p~~y 149 (169)
|+-..+
T Consensus 129 i~~~~~ 134 (549)
T 3g7s_A 129 VVHSML 134 (549)
T ss_dssp EEEGGG
T ss_pred EEChHH
Confidence 986543
No 13
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=37.41 E-value=19 Score=31.02 Aligned_cols=82 Identities=12% Similarity=0.080 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcCeE
Q psy9122 64 RTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTL 143 (169)
Q Consensus 64 ~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~~ 143 (169)
-|-.||.+++.+.-..+.. .|-.+...|.+.-++ ..+-..+=|.-+..-+.++|||+++.-.++..++++.+|+.+
T Consensus 50 ~Ty~el~~~~~~lA~~L~~---~Gv~~gd~V~i~~~~-~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~ 125 (536)
T 3ni2_A 50 YTYADVELTARRVASGLNK---IGIQQGDVIMLFLPS-SPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLL 125 (536)
T ss_dssp EEHHHHHHHHHHHHHHHHH---TTCCTTCEEEEECCS-SHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEE
T ss_pred EEHHHHHHHHHHHHHHHHH---cCCCCCCEEEEEcCC-cHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEE
Confidence 4778888887777665543 455556667665553 233333445667788999999999999999999999999999
Q ss_pred EccCCC
Q psy9122 144 VVPDCY 149 (169)
Q Consensus 144 i~p~~y 149 (169)
|+...+
T Consensus 126 i~~~~~ 131 (536)
T 3ni2_A 126 ITQACY 131 (536)
T ss_dssp EECGGG
T ss_pred EEChHH
Confidence 987543
No 14
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=35.61 E-value=16 Score=31.29 Aligned_cols=84 Identities=17% Similarity=0.089 Sum_probs=57.6
Q ss_pred CCCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcCe
Q psy9122 63 TRTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPST 142 (169)
Q Consensus 63 ~~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~ 142 (169)
.-|-.||.+++.+.-..+... .|..+...|.+.-++ ..+-..+=|.-+..-+.++|||+++.-.++..++.+.+|+.
T Consensus 26 ~~Ty~eL~~~~~~~A~~L~~~--~~~~~g~~V~i~~~n-~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ 102 (511)
T 3e7w_A 26 SLTYQELWEQSDRAAAAIQKR--ISGEKKSPILVYGHM-EPHMIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAEL 102 (511)
T ss_dssp EEEHHHHHHHHHHHHHHHTTT--SCSSSCCCEEEEESS-CHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTCCE
T ss_pred eeeHHHHHHHHHHHHHHHHHh--cCCCCCCeEEEEecC-CHHHHHHHHHHHHhCCEEEecCCCChHHHHHHHHHhCCCCE
Confidence 347788888887776665432 233333445554331 12223334566678889999999999999999999999999
Q ss_pred EEccCCC
Q psy9122 143 LVVPDCY 149 (169)
Q Consensus 143 ~i~p~~y 149 (169)
+|+....
T Consensus 103 li~~~~~ 109 (511)
T 3e7w_A 103 LIHAAGL 109 (511)
T ss_dssp EEESSSC
T ss_pred EEecccc
Confidence 9985443
No 15
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=35.56 E-value=27 Score=30.02 Aligned_cols=82 Identities=11% Similarity=0.114 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcCeE
Q psy9122 64 RTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTL 143 (169)
Q Consensus 64 ~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~~ 143 (169)
-|-.||.+++.+.-..+.. .|-.+..+|.+.-++ ..+-..+=|.-+..-+.++|||+++.-..+..++.+.+++.+
T Consensus 44 ~Ty~eL~~~~~~lA~~L~~---~Gv~~gd~V~i~~~~-~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v 119 (517)
T 3r44_A 44 MTYAQMNALANRCADVLTA---LGIAKGDRVALLMPN-SVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVV 119 (517)
T ss_dssp EEHHHHHHHHHHHHHHHHH---TTCCTTCEEEEECCS-SHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEE
T ss_pred eeHHHHHHHHHHHHHHHHH---cCCCCcCEEEEEcCC-CHHHHHHHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEE
Confidence 4667888877776655542 355555666665552 233333456667888999999999999999999999999999
Q ss_pred EccCCC
Q psy9122 144 VVPDCY 149 (169)
Q Consensus 144 i~p~~y 149 (169)
|+...+
T Consensus 120 i~~~~~ 125 (517)
T 3r44_A 120 IYGAPS 125 (517)
T ss_dssp EECGGG
T ss_pred EECCch
Confidence 986543
No 16
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=33.20 E-value=31 Score=29.53 Aligned_cols=83 Identities=14% Similarity=0.091 Sum_probs=59.1
Q ss_pred CCCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcCe
Q psy9122 63 TRTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPST 142 (169)
Q Consensus 63 ~~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~ 142 (169)
.-|-.||.+++.+.-..+. -.|-.+...|.+.-++ ..+-..+=|.-+..-+.++|||+++.-.++..++.+.+|+.
T Consensus 48 ~~Ty~el~~~~~~lA~~L~---~~Gv~~gd~V~i~~~n-~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ 123 (529)
T 2v7b_A 48 STTYGELEERARRFASALR---TLGVHPEERILLVMLD-TVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARA 123 (529)
T ss_dssp EEEHHHHHHHHHHHHHHHH---HTTCCTTCEEEEECCS-STHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSE
T ss_pred CccHHHHHHHHHHHHHHHH---HcCCCCCCEEEEEcCC-cHHHHHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeE
Confidence 3577888888777665553 2354555666665442 12222334566778899999999999999999999999999
Q ss_pred EEccCCC
Q psy9122 143 LVVPDCY 149 (169)
Q Consensus 143 ~i~p~~y 149 (169)
+|+...+
T Consensus 124 vi~~~~~ 130 (529)
T 2v7b_A 124 VIASGAL 130 (529)
T ss_dssp EEEEGGG
T ss_pred EEechhh
Confidence 9986543
No 17
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=32.53 E-value=40 Score=29.31 Aligned_cols=84 Identities=10% Similarity=-0.033 Sum_probs=60.6
Q ss_pred CCCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcCe
Q psy9122 63 TRTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPST 142 (169)
Q Consensus 63 ~~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~ 142 (169)
.-|-.||.+++.+.-..+.. .|-.+...|.+.-++ ..+-..+=|.-+..-+.++|||+++.-.++..++.+.+++.
T Consensus 100 ~~Ty~el~~~~~~lA~~L~~---~Gv~~gd~V~i~~~n-~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ 175 (570)
T 4gr5_A 100 ELTYGALNERANRLAHRLVG---LGVAPGTLVGVHLER-GFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPL 175 (570)
T ss_dssp EEEHHHHHHHHHHHHHHHHH---TTCCTTCEEEEECCS-SHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSE
T ss_pred cEeHHHHHHHHHHHHHHHHH---cCCCCCCEEEEEeCC-CHHHHHHHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCE
Confidence 35778888877776665543 354555666655542 22333345666788899999999999999999999999999
Q ss_pred EEccCCCc
Q psy9122 143 LVVPDCYT 150 (169)
Q Consensus 143 ~i~p~~y~ 150 (169)
+|+...+.
T Consensus 176 ~i~~~~~~ 183 (570)
T 4gr5_A 176 LVTSRPLS 183 (570)
T ss_dssp EEECTTTT
T ss_pred EEecchhh
Confidence 99976553
No 18
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=32.16 E-value=28 Score=29.92 Aligned_cols=79 Identities=15% Similarity=0.183 Sum_probs=55.7
Q ss_pred CCCCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcC
Q psy9122 62 KTRTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPS 141 (169)
Q Consensus 62 ~~~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~ 141 (169)
+.-|-.||.+++.+.-..+.. | .+|.+.-++ ..+-..+=|.-+..-+.++|||+++.-..+..++.+.+|+
T Consensus 47 ~~~Ty~eL~~~~~~~A~~L~~----~----~~V~i~~~~-~~~~~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~ 117 (505)
T 3nyq_A 47 RSLTYAELAAAAGATAGRIGG----A----GRVAVWATP-AMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPS 117 (505)
T ss_dssp EEEEHHHHHHHHHHHHTTCC-----------CEEEECCS-SHHHHHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCS
T ss_pred eeeeHHHHHHHHHHHHhhccC----C----CEEEEEcCC-CHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCC
Confidence 345778888887776665541 2 234443332 2333334566678889999999999999999999999999
Q ss_pred eEEccCCC
Q psy9122 142 TLVVPDCY 149 (169)
Q Consensus 142 ~~i~p~~y 149 (169)
.+|+....
T Consensus 118 ~vi~~~~~ 125 (505)
T 3nyq_A 118 LVLAPPDA 125 (505)
T ss_dssp EEEECTTC
T ss_pred EEEECCcc
Confidence 99997653
No 19
>1bco_A MUA domain II, bacteriophage MU transposase; polynucleotidyl transferase, DNA binding, endonuclease, integrase; 2.40A {Enterobacteria phage MU} SCOP: b.48.1.1 c.55.3.3 PDB: 1bcm_A
Probab=32.15 E-value=35 Score=27.84 Aligned_cols=52 Identities=2% Similarity=-0.031 Sum_probs=38.1
Q ss_pred HHHHhcCCc-ccC-CCC----CCCCCccccccc--cccccccccCC---------------------CCCHHHHHHHHHH
Q psy9122 25 EEVLQFCTH-FDF-PPS----SPDLSSYDSFSW--KYVKNKVYIYK---------------------TRTLDELTGASYR 75 (169)
Q Consensus 25 ~~wi~r~~~-~~W-Pp~----SPDLnPidf~lW--~~LK~~vy~~~---------------------~~~ieeLk~aI~r 75 (169)
..++.+.|. +.+ +|+ +|.-|++|- +| +.||+.+.... ..|++|+.+.+.+
T Consensus 117 ~~~~~~lgI~~~~~~p~~~~g~p~~kgiEr-~f~~~tlk~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~t~~e~~~~l~~ 195 (327)
T 1bco_A 117 KGLFLLMGAKMHWTSVVAGKGWGQAKPVER-AFGVGGLEEYVDKHPALAGAYTGPNPQAKPDNYGDRAVDAELFLKTLAE 195 (327)
T ss_dssp HHHHHHHTCEEECSSSCTTCCCCCSSCSSG-GGSGGGGGGTTTTCGGGTTTBCCC--------CTTTCEEHHHHHHHHHH
T ss_pred hhHHHhcCeEEEecCcccCCCCCCccceee-eeccCcHhHHhccCCccccccCCCChhhhhhhhccCCCCHHHHHHHHHH
Confidence 367777664 334 678 999999995 89 99998874321 4689999887776
Q ss_pred HH
Q psy9122 76 EI 77 (169)
Q Consensus 76 aw 77 (169)
++
T Consensus 196 ~i 197 (327)
T 1bco_A 196 GV 197 (327)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 20
>1c6v_A Protein (SIV integrase); DNA integration, DNA binding protein; 3.00A {Simian immunodeficiency virus} SCOP: c.55.3.2
Probab=32.06 E-value=14 Score=25.99 Aligned_cols=63 Identities=8% Similarity=0.045 Sum_probs=32.4
Q ss_pred hhcccccchhhhHHHHhcCCc--ccCCCCCCCCC-ccccccccccccccccCCCCCHHHHHHHHHHHH
Q psy9122 13 ASTASSNGQSKIEEVLQFCTH--FDFPPSSPDLS-SYDSFSWKYVKNKVYIYKTRTLDELTGASYREI 77 (169)
Q Consensus 13 ~~~a~~~~~~~~~~wi~r~~~--~~WPp~SPDLn-Pidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw 77 (169)
-++++..+....++++.+.|. ..-+|++|--| .+|- .++.+|+.+.+ ...+.+++.+.+..+.
T Consensus 66 sDnG~~f~s~~~~~~~~~~gi~~~~~~p~~p~~ng~vEr-~~~~lk~~l~~-~~~~~~~~~~~l~~~~ 131 (164)
T 1c6v_A 66 TDNGANFASQEVKMVAWWAGIEHTFGVPYNPQSQGVVEA-MNHHLKNQIDR-IREQANSVETIVLMAV 131 (164)
T ss_dssp CCCCSSTTSSHHHHHHHHHTCEEECC-----------CC-TTTHHHHHHHT-TTTSSSCHHHHHHHHH
T ss_pred eCCchhhhhHHHHHHHHHcCCeEeECCCCCCcccceehH-HHHHHHHHHHH-HhccHHHHHHHHHHHH
Confidence 344455555667788887764 24579999999 7784 79999987654 4445455555555443
No 21
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=31.86 E-value=26 Score=25.01 Aligned_cols=34 Identities=15% Similarity=0.077 Sum_probs=28.5
Q ss_pred CCccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 43 LSSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 43 LnPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
-+|+|+ +.+++++.++...+.+++.+-++..|.+
T Consensus 46 k~PMDL---~tI~~kl~~~~Y~s~~ef~~Dv~Li~~N 79 (117)
T 2i7k_A 46 KHPMDF---STMKEKIKNNDYQSIEELKDNFKLMCTN 79 (117)
T ss_dssp SCCCCH---HHHHHHHTTTSCCSHHHHHHHHHHHHHH
T ss_pred CCCCCH---HHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 468884 8899999999999999999988877754
No 22
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=30.91 E-value=36 Score=29.44 Aligned_cols=83 Identities=16% Similarity=0.053 Sum_probs=60.3
Q ss_pred CCCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcCe
Q psy9122 63 TRTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPST 142 (169)
Q Consensus 63 ~~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~ 142 (169)
.-|-.||.+++.+.-..+.. .|-.+...|.+.-++ ..+-..+=|.-+.+-+.++|+++++.-.++..++.+.+|+.
T Consensus 55 ~~Ty~eL~~~~~~lA~~L~~---~Gv~~gd~V~i~~~n-~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ 130 (544)
T 3o83_A 55 QLSYIELDRLSTNLATRLAE---KGLGKGDTALVQLPN-VAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKL 130 (544)
T ss_dssp EEEHHHHHHHHHHHHHHHHH---TTCCTTCEEEECCCS-SHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSE
T ss_pred ceeHHHHHHHHHHHHHHHHH---CCCCCCCEEEEECCC-CHHHHHHHHHHHHhCcEEecCCCCCCHHHHHHHHHhcCeeE
Confidence 35778888887776665542 355555666665542 22223345566788899999999999999999999999999
Q ss_pred EEccCCC
Q psy9122 143 LVVPDCY 149 (169)
Q Consensus 143 ~i~p~~y 149 (169)
+|+....
T Consensus 131 li~~~~~ 137 (544)
T 3o83_A 131 LIGSRQH 137 (544)
T ss_dssp EEEETTS
T ss_pred EEEcccc
Confidence 9987654
No 23
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.84 E-value=27 Score=24.92 Aligned_cols=33 Identities=21% Similarity=0.188 Sum_probs=27.4
Q ss_pred CccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 44 SSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 44 nPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
+|+|+ +.+++++......+.+++.+-+...|.+
T Consensus 58 ~PmdL---~tI~~kl~~~~Y~s~~~f~~D~~li~~N 90 (123)
T 2dat_A 58 KPVDF---KKIKERIRNHKYRSLGDLEKDVMLLCHN 90 (123)
T ss_dssp SCCCH---HHHHHHHTTTCCCSHHHHHHHHHHHHHH
T ss_pred CCCCH---HHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 57883 8899999999999999999888777654
No 24
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=30.22 E-value=38 Score=28.87 Aligned_cols=78 Identities=13% Similarity=0.119 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcCeE
Q psy9122 64 RTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTL 143 (169)
Q Consensus 64 ~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~~ 143 (169)
-|-.||.+++.+.-..+.. .|-.+..+|.+.-++ ..+-..+=|.-+..-+.++|||+++.-.++..++++.+|+.+
T Consensus 30 ~Ty~el~~~~~~~A~~L~~---~Gv~~gd~V~i~~~~-~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~ 105 (504)
T 1t5h_X 30 LTHAELRARVEAVAARLHA---DGLRPQQRVAVVAPN-SADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAA 105 (504)
T ss_dssp EEHHHHHHHHHHHHHHHHH---TTCCTTCEEEEECCS-CHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEE
T ss_pred eEHHHHHHHHHHHHHHHHH---cCCCCCCEEEEEcCC-CHHHHHHHHHHHHhCcEEEecCCccChHHHHHHHhhcCCcEE
Confidence 4678888877776665542 354555666665442 222233456667888999999999999999999999999999
Q ss_pred Ec
Q psy9122 144 VV 145 (169)
Q Consensus 144 i~ 145 (169)
|+
T Consensus 106 i~ 107 (504)
T 1t5h_X 106 VI 107 (504)
T ss_dssp EE
T ss_pred EE
Confidence 98
No 25
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=30.07 E-value=42 Score=29.33 Aligned_cols=82 Identities=12% Similarity=0.056 Sum_probs=58.8
Q ss_pred CCCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcCe
Q psy9122 63 TRTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPST 142 (169)
Q Consensus 63 ~~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~ 142 (169)
.-|-.||.+++.+.-..+.. .|-.+..+|.+.-++ ..+-..+=|.-+.+-+.++|||+++.-.++..++++.+|+.
T Consensus 64 ~~Ty~eL~~~~~~lA~~L~~---~Gv~~gd~V~i~~~n-~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~ 139 (563)
T 1amu_A 64 QLTYHELNVKANQLARIFIE---KGIGKDTLVGIMMEK-SIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARM 139 (563)
T ss_dssp EEEHHHHHHHHHHHHHHHHH---TTCCTTCEEEEECCS-SHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSE
T ss_pred eecHHHHHHHHHHHHHHHHH---cCCCCCCEEEEEeCC-CHHHHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCE
Confidence 35678888877766555442 354555666555442 22233345666788899999999999999999999999999
Q ss_pred EEccCC
Q psy9122 143 LVVPDC 148 (169)
Q Consensus 143 ~i~p~~ 148 (169)
+|+...
T Consensus 140 li~~~~ 145 (563)
T 1amu_A 140 LLTQKH 145 (563)
T ss_dssp EEECGG
T ss_pred EEEcCc
Confidence 998654
No 26
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=29.88 E-value=28 Score=24.33 Aligned_cols=34 Identities=15% Similarity=-0.031 Sum_probs=28.0
Q ss_pred CCccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 43 LSSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 43 LnPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
-+|+|+ +.+++++..+...+.+++.+-++..|.+
T Consensus 45 k~PmdL---~tI~~kl~~~~Y~s~~~f~~Dv~li~~N 78 (112)
T 3d7c_A 45 RFPIDL---KTMTERLRSRYYVTRKLFVADLQRVIAN 78 (112)
T ss_dssp SSCCCH---HHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred cCCcCH---HHHHHHHcCCCCcCHHHHHHHHHHHHHH
Confidence 358884 8889999999999999999888777654
No 27
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=29.77 E-value=31 Score=29.41 Aligned_cols=82 Identities=10% Similarity=0.023 Sum_probs=57.9
Q ss_pred CCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcCeE
Q psy9122 64 RTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTL 143 (169)
Q Consensus 64 ~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~~ 143 (169)
-|-.||.+++.+.-..+.. .|-.+..+|.+.-++ ..+-..+=|.-+..-+.++|||+++.-.++..++.+.+++.+
T Consensus 27 ~Ty~el~~~~~~lA~~L~~---~g~~~gd~V~i~~~n-~~e~~~~~la~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~ 102 (512)
T 3fce_A 27 ITYKQLKEDSDALAHWISS---EYPDDRSPIMVYGHM-QPEMIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLL 102 (512)
T ss_dssp EEHHHHHHHHHHHHHHHHH---HSTTCCCCEEEEESS-CHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCCEE
T ss_pred EEHHHHHHHHHHHHHHHHH---hCCCCCCEEEEEeCC-CHHHHHHHHHHHHhCCEEEeeCCCCcHHHHHHHHHhcCCCEE
Confidence 4678888877776655543 244444555554442 223333456667888999999999999999999999999999
Q ss_pred EccCCC
Q psy9122 144 VVPDCY 149 (169)
Q Consensus 144 i~p~~y 149 (169)
|+....
T Consensus 103 i~~~~~ 108 (512)
T 3fce_A 103 LSATAV 108 (512)
T ss_dssp EESSCC
T ss_pred EecCcc
Confidence 986443
No 28
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=29.21 E-value=29 Score=24.52 Aligned_cols=33 Identities=15% Similarity=0.096 Sum_probs=27.2
Q ss_pred CccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 44 SSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 44 nPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
+|+|+ +.+++++..+...+.+++.+-+...|.+
T Consensus 53 ~Pmdl---~tI~~kl~~~~Y~~~~~f~~D~~li~~N 85 (120)
T 3jvl_A 53 HPMDM---STIKSKLESREYRDAQEFGADVRLMFSN 85 (120)
T ss_dssp SCCCH---HHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred CCCCH---HHHHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 47774 8889999999999999999888777754
No 29
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=28.34 E-value=46 Score=29.23 Aligned_cols=82 Identities=11% Similarity=-0.058 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcCeE
Q psy9122 64 RTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTL 143 (169)
Q Consensus 64 ~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~~ 143 (169)
-|-.||.+++.+.-..+.. .|-.+...|.+.=++= .+-..+=|.-+.+-++++||++++.-.++..++.+.+++.+
T Consensus 87 ~Ty~eL~~~~~~~A~~L~~---~Gv~~Gd~V~l~~~~~-~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i 162 (580)
T 3etc_A 87 FTFKDLKYYSDKAANFFVK---HGIGKGDYVMLTLKSR-YDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMI 162 (580)
T ss_dssp EEHHHHHHHHHHHHHHHHH---TTCCTTCEEEEECTTC-THHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEE
T ss_pred EeHHHHHHHHHHHHHHHHH---cCCCCCCEEEEEcCCC-HHHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEE
Confidence 4778898888777665542 3544556666655532 22233445667888999999999999999999999999999
Q ss_pred EccCCC
Q psy9122 144 VVPDCY 149 (169)
Q Consensus 144 i~p~~y 149 (169)
|+-...
T Consensus 163 i~~~~~ 168 (580)
T 3etc_A 163 VCIAED 168 (580)
T ss_dssp EEESST
T ss_pred EEecch
Confidence 985543
No 30
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=28.23 E-value=40 Score=29.51 Aligned_cols=83 Identities=13% Similarity=0.032 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcCeE
Q psy9122 64 RTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTL 143 (169)
Q Consensus 64 ~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~~ 143 (169)
-|-.||.+++.+.-..+.. ..|-.+..+|.+.-++ ..+-..+=|.-+..-+.++|||+++.-.++..++++.+|+.+
T Consensus 74 ~Ty~el~~~~~~lA~~L~~--~~Gv~~gd~V~i~~~n-~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~v 150 (570)
T 3c5e_A 74 WNFRELSENSQQAANVLSG--ACGLQRGDRVAVVLPR-VPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAI 150 (570)
T ss_dssp EEHHHHHHHHHHHHHHHHT--TTCCCTTCEEEEECCS-CHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEE
T ss_pred EeHHHHHHHHHHHHHHHHH--ccCCCCCCEEEEEcCC-CHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEE
Confidence 4677888877766554432 1144455666655442 222233446667788999999999999999999999999999
Q ss_pred EccCCC
Q psy9122 144 VVPDCY 149 (169)
Q Consensus 144 i~p~~y 149 (169)
|+...+
T Consensus 151 i~~~~~ 156 (570)
T 3c5e_A 151 VAGDEV 156 (570)
T ss_dssp EEETTT
T ss_pred EechHH
Confidence 986544
No 31
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=28.01 E-value=31 Score=24.87 Aligned_cols=33 Identities=21% Similarity=0.282 Sum_probs=27.6
Q ss_pred CccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 44 SSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 44 nPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
+|+| ++.+++++..+...+.+++.+-+...|.+
T Consensus 57 ~Pmd---L~tI~~kl~~~~Y~s~~~f~~Dv~Li~~N 89 (129)
T 2grc_A 57 KPVD---FKKIKERIRNHKYRSLNDLEKDVMLLCQN 89 (129)
T ss_dssp SCCC---HHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred CCCC---HHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 5788 38899999999999999999888777754
No 32
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=27.62 E-value=1.1e+02 Score=27.47 Aligned_cols=60 Identities=8% Similarity=0.040 Sum_probs=36.6
Q ss_pred hhccCCceeEEeCCCCCcc------cccC------CCcc-----cceeeeeec-cccCcChhHHHHhhhhcC--cCeEEc
Q psy9122 86 KTHHFKNRQVTLEPDFPYV------EALA------PFQP-----LAMKSIHCP-IDTSLNFNQANKLIRELK--PSTLVV 145 (169)
Q Consensus 86 ~g~~~~N~ii~~ep~~~~~------~~~~------Pf~~-----l~~~~~~~p-id~r~~~~~~~~li~~l~--P~~~i~ 145 (169)
+..+++|+|||+-...+-. +... -+.. ..+++..+. .-=--|..++-.+++.++ |+++|+
T Consensus 522 ~~~~~~~~vi~sg~~~~Gt~gr~l~~g~~~i~~~~~~G~~~~v~v~~~v~~i~~~SgHad~~eL~~~i~~~~~~Pk~vi~ 601 (636)
T 2ycb_A 522 LCEDPDNSLVFVGYQAEGSLGRRIQKGWKEIPLKDEDDKMRVYNVRMNIKTIEGFSGHSDRRQLMEYVKRISPKPEKILL 601 (636)
T ss_dssp HTTCTTSEEEECSCCCSSSHHHHHHTTCCEEEEECSSSCEEEEECCSEEEECCSCCSSCCHHHHHHHHHSCSSCCSEEEE
T ss_pred HhCCCCCEEEEecCCCCCCHHHHhhcCCceeeeeccCCceeEEEeEEEEEEECCcceeCCHHHHHHHHHHhccCCCEEEE
Confidence 3457899999987766543 1100 0111 222222222 223378999999999999 998876
No 33
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.25 E-value=33 Score=24.49 Aligned_cols=34 Identities=12% Similarity=0.101 Sum_probs=27.8
Q ss_pred CCccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 43 LSSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 43 LnPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
-+|+|+ +.+++++......+.+++.+-+...|.+
T Consensus 45 k~PmdL---~tI~~kl~~~~Y~s~~ef~~D~~li~~N 78 (121)
T 2d9e_A 45 KKPMDF---FTMKQNLEAYRYLNFDDFEEDFNLIVSN 78 (121)
T ss_dssp SSCCCH---HHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred CCCcCH---HHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 468884 8889999999999999999888777644
No 34
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=27.18 E-value=32 Score=24.87 Aligned_cols=33 Identities=15% Similarity=0.106 Sum_probs=27.7
Q ss_pred CccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 44 SSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 44 nPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
+|+|+ +.+++++..+...+.+++.+-+...|.+
T Consensus 66 ~PmDL---~tI~~kl~~~~Y~s~~ef~~Dv~li~~N 98 (130)
T 2ouo_A 66 HPMDM---STIKSKLEAREYRDAQEFGADVRLMFSN 98 (130)
T ss_dssp SCCCH---HHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred CCCCH---HHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 58884 8889999999999999999888877754
No 35
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=27.02 E-value=33 Score=24.46 Aligned_cols=34 Identities=9% Similarity=0.028 Sum_probs=28.1
Q ss_pred CCccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 43 LSSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 43 LnPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
-+|+|+ +.+++++..+...+.+++.+-+...|.+
T Consensus 51 k~PmdL---~tI~~kl~~~~Y~s~~~f~~D~~li~~N 84 (121)
T 1e6i_A 51 KEPMDL---STMEIKLESNKYQKMEDFIYDARLVFNN 84 (121)
T ss_dssp SSCCCH---HHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred CCCCCH---HHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 468884 8899999999999999999888777654
No 36
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=26.99 E-value=42 Score=30.10 Aligned_cols=84 Identities=11% Similarity=0.051 Sum_probs=59.3
Q ss_pred CCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcCeE
Q psy9122 64 RTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTL 143 (169)
Q Consensus 64 ~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~~ 143 (169)
-|-.||.+++.+.-..+.. -.|-.+..+|.+.=|+- .+-+.+=+.-+.+-++++|+++++.-..+..+|.+.+|+.|
T Consensus 114 ~TY~eL~~~v~~lA~~L~~--~~Gv~~Gd~V~i~~~~~-~e~v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~l 190 (663)
T 1ry2_A 114 ITYKELLEEVCQVAQVLTY--SMGVRKGDTVAVYMPMV-PEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVV 190 (663)
T ss_dssp EEHHHHHHHHHHHHHHHHH--TSCCCTTCEEEECCCSS-HHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEE
T ss_pred EEHHHHHHHHHHHHHHHHH--hcCCCCCCEEEEEcCCC-HHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEE
Confidence 4677888877766554431 12445556676665522 22233445556788999999999999999999999999999
Q ss_pred EccCCCc
Q psy9122 144 VVPDCYT 150 (169)
Q Consensus 144 i~p~~y~ 150 (169)
|+-..+.
T Consensus 191 i~~~~~~ 197 (663)
T 1ry2_A 191 ITTDESN 197 (663)
T ss_dssp EEESBCC
T ss_pred EEccccc
Confidence 9976653
No 37
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=26.89 E-value=43 Score=29.89 Aligned_cols=82 Identities=12% Similarity=0.020 Sum_probs=60.0
Q ss_pred CCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcCeE
Q psy9122 64 RTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTL 143 (169)
Q Consensus 64 ~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~~ 143 (169)
-|-.||.+++.+.-..+.. .|-.+..+|.+.=|+- .+-+.+=+.-+.+-++++||++++.-..+..+|.+.+|+.|
T Consensus 108 lTY~eL~~~v~~lA~~L~~---~Gv~~Gd~V~i~~~~~-~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~l 183 (652)
T 1pg4_A 108 ISYRELHRDVCRFANTLLD---LGIKKGDVVAIYMPMV-PEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLV 183 (652)
T ss_dssp EEHHHHHHHHHHHHHHHHH---HTCCTTCEEEEECCSS-HHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEE
T ss_pred EeHHHHHHHHHHHHHHHHH---cCCCCCCEEEEEeCCC-HHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEE
Confidence 4678888877776655542 3555556776665532 22233445566788999999999999999999999999999
Q ss_pred EccCCC
Q psy9122 144 VVPDCY 149 (169)
Q Consensus 144 i~p~~y 149 (169)
|+-..+
T Consensus 184 i~~~~~ 189 (652)
T 1pg4_A 184 ITADEG 189 (652)
T ss_dssp EEESEE
T ss_pred EEcCcc
Confidence 997654
No 38
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=26.49 E-value=44 Score=28.85 Aligned_cols=83 Identities=14% Similarity=0.104 Sum_probs=59.2
Q ss_pred CCCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcCe
Q psy9122 63 TRTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPST 142 (169)
Q Consensus 63 ~~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~ 142 (169)
.-|-.||.+++.+.-..+.. .|-.+..+|.+.-++ ..+-..+=|.-+..-+.++|+|++..-.++..++.+.+|+.
T Consensus 50 ~~Ty~eL~~~~~~lA~~L~~---~Gv~~gd~V~i~~~~-~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~ 125 (539)
T 1mdb_A 50 HWSYRELDTRADRLAAGFQK---LGIQQKDRVVVQLPN-IKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAA 125 (539)
T ss_dssp EEEHHHHHHHHHHHHHHHHH---HTCCTTCEEEECCCS-SHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSE
T ss_pred cccHHHHHHHHHHHHHHHHH---cCCCCCCEEEEEcCC-cHHHHHHHHHHHHcCeEEecCCCCCCHHHHHHHHHhCCCCE
Confidence 35778888877776665542 354555666665442 12222344555677889999999999999999999999999
Q ss_pred EEccCCC
Q psy9122 143 LVVPDCY 149 (169)
Q Consensus 143 ~i~p~~y 149 (169)
+|+...+
T Consensus 126 vi~~~~~ 132 (539)
T 1mdb_A 126 YIIPDAY 132 (539)
T ss_dssp EEEESEE
T ss_pred EEecccc
Confidence 9987653
No 39
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=26.27 E-value=34 Score=24.61 Aligned_cols=33 Identities=9% Similarity=-0.042 Sum_probs=27.3
Q ss_pred CccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 44 SSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 44 nPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
+|+|+ +.+++++..+...+.+++.+-+...|.+
T Consensus 62 ~PmdL---~tI~~kl~~~~Y~s~~ef~~D~~li~~N 94 (127)
T 2oss_A 62 TPMDM---GTIKKRLENNYYWNAQECIQDFNTMFTN 94 (127)
T ss_dssp SCCCH---HHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred CCCCH---HHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 47884 8889999999999999999888777754
No 40
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=26.11 E-value=36 Score=23.92 Aligned_cols=34 Identities=12% Similarity=0.035 Sum_probs=28.2
Q ss_pred CCccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 43 LSSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 43 LnPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
-+|+|+ +.+++++..+...+.+++.+-+...|.+
T Consensus 49 ~~PmdL---~tI~~kl~~~~Y~s~~~f~~D~~li~~N 82 (116)
T 3iu5_A 49 SQPIDL---MKIQQKLKMEEYDDVNLLTADFQLLFNN 82 (116)
T ss_dssp SSCCCH---HHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred CCCCCH---HHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 468883 8899999999999999999888777754
No 41
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=25.99 E-value=35 Score=23.91 Aligned_cols=33 Identities=15% Similarity=0.037 Sum_probs=27.5
Q ss_pred CccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 44 SSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 44 nPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
+|+|+ +.+++++..+...+.+++.+-+...|.+
T Consensus 55 ~Pmdl---~tI~~kl~~~~Y~~~~~f~~D~~li~~N 87 (116)
T 3nxb_A 55 APMDI---SSMEKKLNGGLYCTKEEFVNDMKTMFRN 87 (116)
T ss_dssp SCCCH---HHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred CCCCH---HHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 57884 8889999989999999999888777754
No 42
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=25.94 E-value=43 Score=28.86 Aligned_cols=81 Identities=12% Similarity=0.095 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcCeE
Q psy9122 64 RTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTL 143 (169)
Q Consensus 64 ~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~~ 143 (169)
-|-.||.+++.+.-..+.. .|- +..+|.+.-++ ..+-..+=|.-+.+-++++|||+++.-.++..++++.+|+.+
T Consensus 56 ~Ty~eL~~~~~~lA~~L~~---~g~-~gd~V~i~~~n-~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~ 130 (562)
T 3ite_A 56 WTYKKLNETANQVANLIIH---ASL-HGRAIAVSLDR-SLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMA 130 (562)
T ss_dssp EEHHHHHHHHHHHHHHHHH---TTC-SSCEEEEECCS-CHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEE
T ss_pred CCHHHHHHHHHHHHHHHHh---cCC-CCCEEEEEeCC-CHHHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEE
Confidence 3678888887776655542 244 34556555442 222233446667888999999999999999999999999999
Q ss_pred EccCCC
Q psy9122 144 VVPDCY 149 (169)
Q Consensus 144 i~p~~y 149 (169)
|+-...
T Consensus 131 i~~~~~ 136 (562)
T 3ite_A 131 FVCDNN 136 (562)
T ss_dssp EECTTT
T ss_pred EEcccc
Confidence 886543
No 43
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=25.02 E-value=39 Score=23.74 Aligned_cols=33 Identities=9% Similarity=0.019 Sum_probs=27.1
Q ss_pred CccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 44 SSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 44 nPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
+|+|+ +.+++++..+...+.+++.+-+...|.+
T Consensus 52 ~Pmdl---~tI~~kl~~~~Y~~~~~f~~D~~li~~N 84 (117)
T 3g0l_A 52 KPMDF---STIREKLSSGQYPNLETFALDVRLVFDN 84 (117)
T ss_dssp SCCCH---HHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred CCCCH---HHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 47774 8889999889999999999888777654
No 44
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=24.92 E-value=38 Score=26.15 Aligned_cols=34 Identities=9% Similarity=0.126 Sum_probs=28.6
Q ss_pred CccccccccccccccccC---CCCCHHHHHHHHHHHHhhh
Q psy9122 44 SSYDSFSWKYVKNKVYIY---KTRTLDELTGASYREIRAI 80 (169)
Q Consensus 44 nPidf~lW~~LK~~vy~~---~~~~ieeLk~aI~raw~sI 80 (169)
+|+|+ +.+|+++..+ ...+.+++.+-++-.|.+-
T Consensus 113 ~PMDL---~tIk~kL~~~~~~~Y~s~~eF~~Dv~Lif~N~ 149 (189)
T 2ro1_A 113 GTLDL---TLIRARLQEKLSPPYSSPQEFAQDVGRMFKQF 149 (189)
T ss_dssp CCCCH---HHHHHHHHTSSSSCCSCHHHHHHHHHHHHHHH
T ss_pred CcccH---HHHHHHHhcCCCcccCCHHHHHHHHHHHHHHH
Confidence 68984 8999999888 8999999999888777553
No 45
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=24.71 E-value=39 Score=24.06 Aligned_cols=33 Identities=9% Similarity=0.152 Sum_probs=27.4
Q ss_pred CccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 44 SSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 44 nPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
+|+|+ +.+++++......+.+++.+-+.-.|.+
T Consensus 60 ~PmdL---~tI~~kl~~~~Y~~~~~f~~D~~li~~N 92 (124)
T 3mb4_A 60 KPMDM---EKIRSHMMANKYQDIDSMVEDFVMMFNN 92 (124)
T ss_dssp SCCCH---HHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred CCCCH---HHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 57873 8889999999999999999888777754
No 46
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=24.47 E-value=51 Score=28.21 Aligned_cols=82 Identities=10% Similarity=0.101 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcC-------hhHHHHhhh
Q psy9122 64 RTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLN-------FNQANKLIR 136 (169)
Q Consensus 64 ~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~-------~~~~~~li~ 136 (169)
-|-.||.+++.+.-..+.. .|-.+...|.+.-++ ..+-..+=|.-+..-+.++|+++++. -..+..++.
T Consensus 50 ~Ty~eL~~~~~~lA~~L~~---~Gv~~gd~V~i~~~~-~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~ 125 (576)
T 3gqw_A 50 LEYQTLKARAEAGAKRLLS---LNLKKGDRVALIAET-SSEFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLA 125 (576)
T ss_dssp EEHHHHHHHHHHHHHHHHH---TCCCTTCEEEEECCS-SHHHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHH
T ss_pred EcHHHHHHHHHHHHHHHHH---cCCCCCCEEEEEcCC-cHHHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHH
Confidence 4678888887776665542 254555666665553 22233344666788899999999988 678889999
Q ss_pred hcCcCeEEccCCC
Q psy9122 137 ELKPSTLVVPDCY 149 (169)
Q Consensus 137 ~l~P~~~i~p~~y 149 (169)
+.+|+.+|+...+
T Consensus 126 ~~~~~~ii~~~~~ 138 (576)
T 3gqw_A 126 SCQPAAIITGDEW 138 (576)
T ss_dssp HHCCSEEEECGGG
T ss_pred hcCCCEEEecHHH
Confidence 9999999986543
No 47
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=24.40 E-value=40 Score=24.06 Aligned_cols=33 Identities=12% Similarity=0.096 Sum_probs=27.2
Q ss_pred CccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 44 SSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 44 nPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
+|+|+ +.+++++..+...+.+++.+-+...|.+
T Consensus 52 ~PmdL---~tI~~kl~~~~Y~~~~~f~~D~~li~~N 84 (123)
T 3hme_A 52 HPMDF---GTMKDKIVANEYKSVTEFKADFKLMCDN 84 (123)
T ss_dssp SCCCH---HHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred CCCCH---HHHHHHhccCCCCCHHHHHHHHHHHHHH
Confidence 57874 8889999989999999999888777654
No 48
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=23.89 E-value=46 Score=31.14 Aligned_cols=83 Identities=8% Similarity=-0.006 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHHHHhhhhHHHHhhccCCceeEEeCCCCCcccccCCCcccceeeeeeccccCcChhHHHHhhhhcCcCeE
Q psy9122 64 RTLDELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTL 143 (169)
Q Consensus 64 ~~ieeLk~aI~raw~sIs~e~l~g~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~r~~~~~~~~li~~l~P~~~ 143 (169)
-|-.||.+++.+.-..+.. .|-.+...|.+.-++ ..+-..+=|.-+..-+.++|||+++.-.++..++++.+|+.+
T Consensus 89 ~TY~eL~~~~~~lA~~L~~---~Gv~~gd~V~i~~~n-s~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~v 164 (979)
T 3tsy_A 89 YTYSDVHVISRQIAANFHK---LGVNQNDVVMLLLPN-CPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLI 164 (979)
T ss_dssp EEHHHHHHHHHHHHHHHHH---TTCCTTCEEEEECSS-CHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEE
T ss_pred EEHHHHHHHHHHHHHHHHH---cCCCCcCEEEEEeCC-CHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEE
Confidence 3678888877776665543 355556666665553 123333456667888999999999999999999999999999
Q ss_pred EccCCCc
Q psy9122 144 VVPDCYT 150 (169)
Q Consensus 144 i~p~~y~ 150 (169)
|+...+.
T Consensus 165 i~~~~~~ 171 (979)
T 3tsy_A 165 ITEARYV 171 (979)
T ss_dssp EECSTTT
T ss_pred EEChHHH
Confidence 9876653
No 49
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=23.62 E-value=1.2e+02 Score=24.26 Aligned_cols=58 Identities=12% Similarity=0.174 Sum_probs=33.9
Q ss_pred cCCceeEEeCCCCCc---ccccCCCcccceeeeeeccc---cCcChhHHHHhhhhcCcCeEEcc
Q psy9122 89 HFKNRQVTLEPDFPY---VEALAPFQPLAMKSIHCPID---TSLNFNQANKLIRELKPSTLVVP 146 (169)
Q Consensus 89 ~~~N~ii~~ep~~~~---~~~~~Pf~~l~~~~~~~pid---~r~~~~~~~~li~~l~P~~~i~p 146 (169)
.+...|+..+|.|.. ..+..-+.....+...+|.+ ..+|..++.+.+.+-+++.+++-
T Consensus 116 ~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~ 179 (425)
T 3ecd_A 116 KPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQHKPSLIIAG 179 (425)
T ss_dssp CTTCEEEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEEE
T ss_pred CCCCEEEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHhhcCCcEEEEc
Confidence 456789999998865 11111123334466778877 46899999999987788877764
No 50
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=23.18 E-value=43 Score=23.56 Aligned_cols=33 Identities=9% Similarity=0.013 Sum_probs=27.5
Q ss_pred CccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 44 SSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 44 nPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
+|+|+ +.+++++..+...+.+++.+-+...|.+
T Consensus 53 ~Pmdl---~tI~~kl~~~~Y~~~~~f~~D~~li~~N 85 (119)
T 3p1f_A 53 NPMDL---STIKRKLDTGQYQEPWQYVDDVWLMFNN 85 (119)
T ss_dssp SCCCH---HHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred CCCCH---HHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 68884 8889999999999999999888777754
No 51
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=22.81 E-value=43 Score=24.13 Aligned_cols=33 Identities=12% Similarity=0.062 Sum_probs=26.6
Q ss_pred CccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 44 SSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 44 nPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
+|+|+ +.+++++..+...+.+++.+-+...|.+
T Consensus 52 ~PmdL---~tI~~kl~~~~Y~~~~~f~~D~~li~~N 84 (135)
T 3rcw_A 52 HPMDF---ATMRKRLEAQGYKNLHEFEEDFDLIIDN 84 (135)
T ss_dssp SCCCH---HHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred CCCCH---HHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 47773 8888999888999999999888776644
No 52
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=22.80 E-value=44 Score=24.23 Aligned_cols=33 Identities=15% Similarity=0.092 Sum_probs=27.2
Q ss_pred CccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 44 SSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 44 nPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
+|+| ++.+++++......+.+++.+-+...|.+
T Consensus 62 ~PMd---L~tI~~kL~~~~Y~s~~ef~~Dv~Lif~N 94 (130)
T 3k2j_A 62 MPIS---LQQIRTKLKNQEYETLDHLECDLNLMFEN 94 (130)
T ss_dssp SCCC---HHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred CCCC---HHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 5788 38889999989999999999888777654
No 53
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=22.61 E-value=40 Score=24.04 Aligned_cols=33 Identities=9% Similarity=0.177 Sum_probs=27.5
Q ss_pred CccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 44 SSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 44 nPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
+|+|+ +.+++++..+...+.+++.+-+.-.|.+
T Consensus 54 ~PmdL---~tI~~kl~~~~Y~s~~~f~~D~~li~~N 86 (126)
T 3mqm_A 54 DPLDL---ITIEKQILTGYYKTVEAFDADMLKVFRN 86 (126)
T ss_dssp SCCCH---HHHHHHHHHTCCCSHHHHHHHHHHHHHH
T ss_pred CCCCH---HHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 58884 8899999989999999999888777654
No 54
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=22.25 E-value=45 Score=24.03 Aligned_cols=33 Identities=12% Similarity=-0.031 Sum_probs=26.5
Q ss_pred CccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 44 SSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 44 nPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
+|+|+ +.+++++..+...+.+++.+-+.-.|.+
T Consensus 60 ~Pmdl---~tI~~kl~~~~Y~~~~~f~~D~~li~~N 92 (135)
T 3mb3_A 60 TPMDF---ATVRETLEAGNYESPMELCKDVRLIFSN 92 (135)
T ss_dssp SCCCH---HHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred CCcCH---HHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 47774 8888899888899999999888776654
No 55
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=21.99 E-value=42 Score=23.75 Aligned_cols=34 Identities=6% Similarity=0.022 Sum_probs=27.7
Q ss_pred CCccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 43 LSSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 43 LnPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
-+|+|+ +.+++++..+...+.+++.+-+...|.+
T Consensus 52 k~PmdL---~tI~~kl~~~~Y~s~~~f~~D~~li~~N 85 (120)
T 3ljw_A 52 KEPIDL---KTIAQRIQNGSYKSIHAMAKDIDLLAKN 85 (120)
T ss_dssp SSCCCH---HHHHHHHHHTCCCSHHHHHHHHHHHHHH
T ss_pred CCCCCH---HHHHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 357884 8899999889999999999888777654
No 56
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=21.96 E-value=42 Score=25.00 Aligned_cols=33 Identities=12% Similarity=0.083 Sum_probs=27.6
Q ss_pred CccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 44 SSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 44 nPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
+|+|+ +.+++++..+...+.+++.+-+...|.+
T Consensus 111 ~PmdL---~tI~~kl~~~~Y~s~~~f~~D~~li~~N 143 (174)
T 2ri7_A 111 EPMDL---ATMEERVQRRYYEKLTEFVADMTKIFDN 143 (174)
T ss_dssp SCCCH---HHHHHHHHTTCCCBHHHHHHHHHHHHHH
T ss_pred CcCCH---HHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 68884 8889999999999999999888877754
No 57
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=21.54 E-value=48 Score=23.52 Aligned_cols=33 Identities=9% Similarity=-0.084 Sum_probs=26.6
Q ss_pred CccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 44 SSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 44 nPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
+|+|+ +.+++++..+...+.+++.+-+...|.+
T Consensus 49 ~PmdL---~tI~~kl~~~~Y~~~~~f~~D~~li~~N 81 (123)
T 3q2e_A 49 TPMDF---GTVRETLDAGNYDSPLEFCKDIRLIFSN 81 (123)
T ss_dssp SCCCH---HHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred CCCCH---HHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 47773 8889999888999999998887776644
No 58
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=21.16 E-value=44 Score=30.13 Aligned_cols=34 Identities=15% Similarity=0.380 Sum_probs=26.8
Q ss_pred eeeeeeccccC---cChhHHHHhhhhcCcCeEEccCC
Q psy9122 115 MKSIHCPIDTS---LNFNQANKLIRELKPSTLVVPDC 148 (169)
Q Consensus 115 ~~~~~~pid~r---~~~~~~~~li~~l~P~~~i~p~~ 148 (169)
.++..+++|+. +|+.++.++..+.+|+.+|+-.+
T Consensus 176 ~~~~~Y~vd~~t~~IDyd~~~~~A~~~kPklIi~G~S 212 (490)
T 3ou5_A 176 FESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTS 212 (490)
T ss_dssp ----CBCEETTTTEECHHHHHHHHHHHCCSEEEECCS
T ss_pred ccccccccCCCCCcccHHHHHHHHhhcCCCeEEECCc
Confidence 46777888865 99999999999999999998764
No 59
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=20.74 E-value=50 Score=24.62 Aligned_cols=34 Identities=9% Similarity=-0.081 Sum_probs=27.6
Q ss_pred CCccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 43 LSSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 43 LnPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
-+|+|+ +.+++++......+.+++.+-+...|.+
T Consensus 72 k~PMDL---~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N 105 (154)
T 4alg_A 72 KQPMDM---GTIKRRLENNYYWAASECMQDFNTMFTN 105 (154)
T ss_dssp SSCCCH---HHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred CCCCCH---HHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 468884 8889999999999999999888777654
No 60
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=20.74 E-value=50 Score=24.23 Aligned_cols=33 Identities=12% Similarity=0.053 Sum_probs=26.8
Q ss_pred CccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 44 SSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 44 nPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
+|+|+ +.+++++..+...+.+++.+-+.-.|.+
T Consensus 70 ~PmdL---~tI~~kl~~~~Y~s~~ef~~D~~li~~N 102 (150)
T 3tlp_A 70 EPMDL---KIIEHNIRNDKYAGEEGMIEDMKLMFRN 102 (150)
T ss_dssp SCCCH---HHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred CCCCH---HHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 57883 8889999999999999998877766643
No 61
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=20.64 E-value=1.2e+02 Score=23.96 Aligned_cols=81 Identities=11% Similarity=0.116 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHHHHhhhhH-------------H-HHhh-ccCCceeEEeCCCCCcccccCCCcccceeeeeecccc--Cc
Q psy9122 64 RTLDELTGASYREIRAIAQ-------------E-RLKT-HHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDT--SL 126 (169)
Q Consensus 64 ~~ieeLk~aI~raw~sIs~-------------e-~l~g-~~~~N~ii~~ep~~~~~~~~~Pf~~l~~~~~~~pid~--r~ 126 (169)
...+++++++.+....-.. . -+++ -.+...|+..+|.|..-.. .++-.-.++..+|+|. .+
T Consensus 67 ~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~--~~~~~g~~~~~v~~~~~~~~ 144 (367)
T 3euc_A 67 PSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLALAAARPGAKVMAPVPGFVMYAM--SAQFAGLEFVGVPLRADFTL 144 (367)
T ss_dssp CCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHHHTCCTTCEEEEEESCSCCSCH--HHHTTTCEEEEEECCTTSCC
T ss_pred CcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHHHHcCCCCEEEEcCCCHHHHHH--HHHHcCCeEEEecCCCCCCC
Confidence 4578898888776643010 0 1111 2345689999998864322 2445577889999886 48
Q ss_pred ChhHHHHhhhhcCcCeEEcc
Q psy9122 127 NFNQANKLIRELKPSTLVVP 146 (169)
Q Consensus 127 ~~~~~~~li~~l~P~~~i~p 146 (169)
|..++.+.+.+-+++.+++.
T Consensus 145 d~~~l~~~l~~~~~~~v~~~ 164 (367)
T 3euc_A 145 DRGAMLAAMAEHQPAIVYLA 164 (367)
T ss_dssp CHHHHHHHHHHHCCSEEEEE
T ss_pred CHHHHHHHhhccCCCEEEEc
Confidence 88999998888788888874
No 62
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=20.58 E-value=52 Score=23.64 Aligned_cols=33 Identities=15% Similarity=0.021 Sum_probs=27.0
Q ss_pred CccccccccccccccccCCCCCHHHHHHHHHHHHhh
Q psy9122 44 SSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIRA 79 (169)
Q Consensus 44 nPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~s 79 (169)
+|+| ++.+++++..+...+.+++.+-+...|.+
T Consensus 49 ~Pmd---L~tI~~kl~~~~Y~~~~~f~~D~~li~~N 81 (130)
T 3dai_A 49 QPMD---LSSVISKIDLHKYLTVKDYLRDIDLICSN 81 (130)
T ss_dssp SCCC---HHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred CCCC---HHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 4777 38889999989999999999888777654
No 63
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=20.20 E-value=78 Score=23.91 Aligned_cols=41 Identities=15% Similarity=0.340 Sum_probs=31.1
Q ss_pred cCCCCCCCC---CccccccccccccccccCCCCCHHHHHHHHHHHHh
Q psy9122 35 DFPPSSPDL---SSYDSFSWKYVKNKVYIYKTRTLDELTGASYREIR 78 (169)
Q Consensus 35 ~WPp~SPDL---nPidf~lW~~LK~~vy~~~~~~ieeLk~aI~raw~ 78 (169)
.-|++-||- +||++ ..+|+++.+++..+++++.+-+...+.
T Consensus 36 ~LPsk~pdYY~k~Pi~l---~~Ikkri~~~~Y~sld~f~~D~~lmf~ 79 (147)
T 3iu6_A 36 EIPAVDPNFPNKPPLTF---DIIRKNVENNRYRRLDLFQEHMFEVLE 79 (147)
T ss_dssp TCCSSCTTSTTSCCCCH---HHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HCCCCCccccCCCCcCH---HHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 446655553 68884 789999999999999999886665543
Done!