RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9122
(169 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.037
Identities = 31/197 (15%), Positives = 56/197 (28%), Gaps = 52/197 (26%)
Query: 12 IASTASSNGQSKIEEVLQFC-THF--DF------------PPSSPDLSSYDSFSWKYVKN 56
++S + + ++VL C T F + D + + +KN
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL--IKN 125
Query: 57 KVYIYKTRTLDELTGASYRE---IRAIAQERLKTH-----------HFKNRQVTLEPDFP 102
Y R + + RA+ + + +F+ + +
Sbjct: 126 --Y-ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHV 182
Query: 103 YVEAL-----APFQPLAMKSIHCPIDTSLNFNQANKLIRELK-PSTLVVPDCY--THPPP 154
V L L +D F Q ++ L+ PS PD P
Sbjct: 183 LVGDLIKFSAETLSELI----RTTLDAEKVFTQGLNILEWLENPSN--TPDKDYLLSIPI 236
Query: 155 SFP--QRTELVIDQYMV 169
S P +L Y+V
Sbjct: 237 SCPLIGVIQLA--HYVV 251
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide,
zinc dependen hydrolase; HET: MSE PG4; 1.60A
{Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A*
3dfm_A 2xad_A*
Length = 273
Score = 30.7 bits (69), Expect = 0.19
Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 10/95 (10%)
Query: 67 DELTGASYREIRAIAQERLKTHH----FKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPI 122
D+ +E A A + L+ H F + PD ++ A + + H P
Sbjct: 69 DDAVLYRRKEDIA-ALDHLRVAHRHGRFLDSIYRKLPDGRWLTAHVEGRQKLAVNDHSPD 127
Query: 123 DTSLNFNQAN----KLIRELKPSTLVVPDCYT-HP 152
+ +I E P+ +V HP
Sbjct: 128 SDHDLVGEVADDIRSIIDEFDPTLVVTCAAIGEHP 162
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.1 bits (64), Expect = 0.85
Identities = 19/156 (12%), Positives = 41/156 (26%), Gaps = 50/156 (32%)
Query: 33 HFDFPPSSPDLSSYD-----------SFSWKYVKNKVY-IYKTRTLDELTGASYREIRA- 79
H DF D +F K V++ I +D + +
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 80 ------------IAQERLKTHHFKN--------RQVTLEPDFP---YVEAL-------AP 109
+ Q+ ++ N + +P Y+E
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 110 FQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTLVV 145
F + + + + + + EL+P+ V+
Sbjct: 126 FAKYNVSRLQP-------YLKLRQALLELRPAKNVL 154
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics,
joint center for STR genomics, JCSG, protein structure
initiative; HET: MSE; 2.25A {Shewanella loihica pv-4}
SCOP: c.13.2.2
Length = 126
Score = 27.2 bits (60), Expect = 1.9
Identities = 7/53 (13%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 68 ELTGASYREIRAIAQERLKTHHFKNRQVTLE-PDFPYVEALAPFQPLAMKSIH 119
+LT Y ++ + + L ++ + + A + L + H
Sbjct: 29 KLTHEDYEQMTPLLESALAGIKTPEIVALIDITELDGLSLHAAWDDLKLGLKH 81
>3cx5_G Cytochrome B-C1 complex subunit 7; complex III, electron transfer
complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: f.27.1.1 PDB: 1kyo_G* 3cxh_G* 2ibz_F*
1ezv_F* 1kb9_G* 1p84_G*
Length = 126
Score = 26.7 bits (59), Expect = 2.6
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 67 DELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVE 105
DE +YR IRA E +N + + D PY+
Sbjct: 65 DESYARAYRIIRAHQTELTHHLLPRNEWIKAQEDVPYLL 103
>3dfi_A Pseudoaglycone deacetylase DBV21; single alpha-beta domain,
hydrolase; 2.10A {Actinoplanes teichomyceticus}
Length = 270
Score = 27.2 bits (60), Expect = 2.7
Identities = 14/92 (15%), Positives = 27/92 (29%), Gaps = 7/92 (7%)
Query: 67 DELTGASYREIRAIAQERLK-THHFKNRQVTLEPDFPYVEALAPFQPLAMKSIHCPIDTS 125
++ E A A ++L H + P + L +M P +
Sbjct: 69 EDAPLRRRNEDIA-ALDQLGAGHRHGRFLDAIYRRSPDGQWLLHHNEGSMVRQQSPANNH 127
Query: 126 LNFNQANK----LIRELKPSTLVVPDC-YTHP 152
+ +I E P+ ++ HP
Sbjct: 128 DLVAAIREDIESMIAECDPTLVLTCVAIGKHP 159
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM
radical, activase, glycyl radical, 4Fe- 4S, carbohydrate
metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia
coli} PDB: 3cb8_A*
Length = 245
Score = 27.2 bits (61), Expect = 2.9
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 95 VTLEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPST 142
L+ +F F+ + IH +DT+ + + +I EL T
Sbjct: 80 AILQAEF----VRDWFRACKKEGIHTCLDTNGFVRRYDPVIDELLEVT 123
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 3.9
Identities = 6/27 (22%), Positives = 13/27 (48%), Gaps = 8/27 (29%)
Query: 21 QS--KIEEVLQFCTHFDFPP-SSPDLS 44
Q+ K++ L+ + S+P L+
Sbjct: 20 QALKKLQASLKL-----YADDSAPALA 41
>3ldv_A Orotidine 5'-phosphate decarboxylase; structural genomics,
infectious diseases; 1.77A {Vibrio cholerae o1 biovar el
tor} PDB: 3uwq_A*
Length = 255
Score = 26.4 bits (59), Expect = 4.3
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 108 APFQPLAMKS--IHCPIDTSLNFNQANKLIRELKPSTLVV 145
FQ AM + +D N A + ++ PST +
Sbjct: 18 LYFQSNAMNDPKVIVALDYD-NLADALAFVDKIDPSTCRL 56
>1pp9_F Ubiquinol-cytochrome C reductase complex 14 kDa P; cytochrome BC1,
membrane protein, heme protein, rieske iron protein,
cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL
PEE; 2.10A {Bos taurus} SCOP: f.27.1.1 PDB: 1bgy_F*
1be3_F* 1l0n_F* 1ntk_F* 1ntm_F* 1ntz_F* 1nu1_F* 1l0l_F*
1ppj_F* 1sqb_F* 1sqq_F* 1sqv_F* 1sqx_F* 2a06_F* 2fyu_F*
2ybb_F* 1sqp_F* 1qcr_F* 1bcc_F* 2bcc_F* ...
Length = 110
Score = 25.2 bits (55), Expect = 6.6
Identities = 8/39 (20%), Positives = 14/39 (35%)
Query: 67 DELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVE 105
+ +R RA+ + K + E D Y+E
Sbjct: 53 NLYDDRVFRIKRALDLSMRQQILPKEQWTKYEEDKSYLE 91
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.400
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,626,069
Number of extensions: 144934
Number of successful extensions: 253
Number of sequences better than 10.0: 1
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 10
Length of query: 169
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 82
Effective length of database: 4,272,666
Effective search space: 350358612
Effective search space used: 350358612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.5 bits)