RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9122
         (169 letters)



>d3cx5g1 f.27.1.1 (G:3-127) 14 kDa protein of cytochrome bc1 complex
           (Ubiquinol-cytochrome c reductase) {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 125

 Score = 26.2 bits (58), Expect = 1.1
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 67  DELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVEALAPF 110
           DE    +YR IRA   E       +N  +  + D PY   L P+
Sbjct: 64  DESYARAYRIIRAHQTELTHHLLPRNEWIKAQEDVPY---LLPY 104


>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
           methyltransferase Dot1l {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 328

 Score = 26.7 bits (58), Expect = 1.7
 Identities = 15/107 (14%), Positives = 34/107 (31%), Gaps = 3/107 (2%)

Query: 42  DLSSYDSFSWKYVKNKVYIYKTRTLD--ELTGASYREIRAIAQERLKTHHFKNRQVTLEP 99
           DL S        V           ++  ++       +    ++ +K +  K+ + TLE 
Sbjct: 157 DLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLER 216

Query: 100 -DFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTLVV 145
            DF   E        ++  ++         +Q  +    +K    +V
Sbjct: 217 GDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIV 263


>d1ppjf_ f.27.1.1 (F:) 14 kDa protein of cytochrome bc1 complex
           (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus)
           [TaxId: 9913]}
          Length = 99

 Score = 25.4 bits (56), Expect = 1.8
 Identities = 8/39 (20%), Positives = 14/39 (35%)

Query: 67  DELTGASYREIRAIAQERLKTHHFKNRQVTLEPDFPYVE 105
           +      +R  RA+     +    K +    E D  Y+E
Sbjct: 42  NLYDDRVFRIKRALDLSMRQQILPKEQWTKYEEDKSYLE 80


>d1d4m1_ b.121.4.1 (1:) Human enterovirus B coat proteins {Human
           coxsackievirus A9 [TaxId: 12067]}
          Length = 284

 Score = 24.8 bits (54), Expect = 6.7
 Identities = 8/50 (16%), Positives = 15/50 (30%), Gaps = 3/50 (6%)

Query: 14  STASSNGQSKIEEVLQFCTHFDFPPSSPDLSSYDSFSWKYVKNKVYIYKT 63
              ++  Q       Q       PP  P  +  D ++W+   N    +  
Sbjct: 128 DPGTTLAQDMPVLTHQIMY---VPPGGPIPAKVDDYAWQTSTNPSIFWTE 174


>d1y7ba2 b.67.2.1 (A:4-324) Beta-D-xylosidase N-terminal domain
          {Clostridium acetobutylicum [TaxId: 1488]}
          Length = 321

 Score = 24.5 bits (52), Expect = 7.2
 Identities = 6/27 (22%), Positives = 11/27 (40%)

Query: 30 FCTHFDFPPSSPDLSSYDSFSWKYVKN 56
            + F++ P      S D  +W  V +
Sbjct: 25 ATSTFEWFPGVQIHHSKDLVNWHLVAH 51


>d2bs2b2 d.15.4.2 (B:1-106) Fumarate reductase iron-sulfur protein,
           N-terminal domain {Wolinella succinogenes [TaxId: 844]}
          Length = 106

 Score = 23.7 bits (51), Expect = 7.4
 Identities = 12/86 (13%), Positives = 21/86 (24%), Gaps = 10/86 (11%)

Query: 89  HFKNRQVTLEPDFPYVEALAPFQPLAMKSI---------HCPIDTSLNFNQANKLIRELK 139
           HF+  ++   P       L   +      +          C     +  N    L     
Sbjct: 22  HFQEYKIEEAPSMTIFIVLNMIRETYDPDLNFDFVCRAGICGSC-GMMINGRPSLACRTL 80

Query: 140 PSTLVVPDCYTHPPPSFPQRTELVID 165
                       P P+F    +L +D
Sbjct: 81  TKDFEDGVITLLPLPAFKLIKDLSVD 106


>d1ncqa_ b.121.4.1 (A:) Rhinovirus coat proteins {Human rhinovirus B
           14 (HRV-14) [TaxId: 12131]}
          Length = 273

 Score = 24.4 bits (53), Expect = 9.4
 Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 3/52 (5%)

Query: 12  IASTASSNGQSKIEEVLQFCTHFDFPPSSPDLSSYDSFSWKYVKNKVYIYKT 63
             ++   +       V+Q       PP +P+   +D ++W+   N    +K 
Sbjct: 116 ATASQPDSANYSSNLVVQAMY---VPPGAPNPKEWDDYTWQSASNPSVFFKV 164


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.133    0.400 

Gapped
Lambda     K      H
   0.267   0.0675    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 647,093
Number of extensions: 28765
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 11
Length of query: 169
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 90
Effective length of database: 1,322,926
Effective search space: 119063340
Effective search space used: 119063340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.1 bits)