BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9123
(118 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A7SBF0|INT9_NEMVE Integrator complex subunit 9 homolog OS=Nematostella vectensis
GN=ints9 PE=3 SV=1
Length = 660
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 39/55 (70%), Positives = 47/55 (85%)
Query: 51 SGSVLVPCYPSGVIYDLFECLSSHLDNSSLTQIPMFFISPVADISLAYSNILAEW 105
G+VLVPCYPSGV+YDLFECL ++LDN+ L +P++FISPVAD SLAYSNI EW
Sbjct: 296 GGNVLVPCYPSGVLYDLFECLYTYLDNAKLGMVPIYFISPVADSSLAYSNIYGEW 350
>sp|Q4R5Z4|INT9_MACFA Integrator complex subunit 9 OS=Macaca fascicularis GN=INTS9 PE=2
SV=1
Length = 637
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 45/55 (81%)
Query: 51 SGSVLVPCYPSGVIYDLFECLSSHLDNSSLTQIPMFFISPVADISLAYSNILAEW 105
G+VLVPCYPSGVIYDL ECL ++D++ L+ +P++FISPVA+ SL +S I AEW
Sbjct: 271 GGNVLVPCYPSGVIYDLLECLYQYIDSAGLSSVPLYFISPVANSSLEFSQIFAEW 325
>sp|Q9NV88|INT9_HUMAN Integrator complex subunit 9 OS=Homo sapiens GN=INTS9 PE=1 SV=2
Length = 658
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 45/55 (81%)
Query: 51 SGSVLVPCYPSGVIYDLFECLSSHLDNSSLTQIPMFFISPVADISLAYSNILAEW 105
G+VLVPCYPSGVIYDL ECL ++D++ L+ +P++FISPVA+ SL +S I AEW
Sbjct: 292 GGNVLVPCYPSGVIYDLLECLYQYIDSAGLSSVPLYFISPVANSSLEFSQIFAEW 346
>sp|Q2KJA6|INT9_BOVIN Integrator complex subunit 9 OS=Bos taurus GN=INTS9 PE=2 SV=1
Length = 658
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 44/55 (80%)
Query: 51 SGSVLVPCYPSGVIYDLFECLSSHLDNSSLTQIPMFFISPVADISLAYSNILAEW 105
G+VLVPCYPSGVIYDL ECL ++D++ L+ IP +FISPVA+ SL +S I AEW
Sbjct: 292 GGNVLVPCYPSGVIYDLLECLYQYIDSAGLSSIPFYFISPVANSSLEFSQIFAEW 346
>sp|Q8K114|INT9_MOUSE Integrator complex subunit 9 OS=Mus musculus GN=Ints9 PE=2 SV=1
Length = 658
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 44/55 (80%)
Query: 51 SGSVLVPCYPSGVIYDLFECLSSHLDNSSLTQIPMFFISPVADISLAYSNILAEW 105
G+VLVPCYPSGVIYDL ECL ++D++ L+ IP +FISPVA+ SL +S I AEW
Sbjct: 292 GGNVLVPCYPSGVIYDLLECLYQYIDSAGLSNIPFYFISPVANSSLEFSQIFAEW 346
>sp|Q6DFF4|INT9_XENLA Integrator complex subunit 9 OS=Xenopus laevis GN=ints9 PE=2 SV=1
Length = 658
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 44/55 (80%)
Query: 51 SGSVLVPCYPSGVIYDLFECLSSHLDNSSLTQIPMFFISPVADISLAYSNILAEW 105
G+VLVPCYPSGVIYDL ECL ++D++ L+ +P +FISPVA+ SL +S I AEW
Sbjct: 292 GGNVLVPCYPSGVIYDLLECLYQYIDSAGLSNVPFYFISPVANSSLEFSQIFAEW 346
>sp|Q5ZKK2|INT9_CHICK Integrator complex subunit 9 OS=Gallus gallus GN=INTS9 PE=2 SV=1
Length = 658
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 44/55 (80%)
Query: 51 SGSVLVPCYPSGVIYDLFECLSSHLDNSSLTQIPMFFISPVADISLAYSNILAEW 105
G+VLVPCYPSGVIYDL ECL ++D++ L+ +P +FISPVA+ SL +S I AEW
Sbjct: 292 GGNVLVPCYPSGVIYDLLECLYQYIDSAGLSNVPFYFISPVANSSLEFSQIFAEW 346
>sp|Q54SH0|INT9_DICDI Integrator complex subunit 9 homolog OS=Dictyostelium discoideum
GN=ints9 PE=3 SV=1
Length = 712
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 50 ESGSVLVPCYPSGVIYDLFECLSSHLDNSSLTQIPMFFISPVADISLAYSNILAEW--NT 107
+ G+VL+P Y G+I DLFE L+ +L+ L +P++F+S V+ L+Y++I +EW +
Sbjct: 328 QGGTVLIPSYSCGIILDLFEHLADYLNKVGLPYVPIYFVSSVSKAVLSYADIYSEWLNKS 387
Query: 108 KVEVQILSKKP 118
K E + + P
Sbjct: 388 KQERAFMPETP 398
>sp|Q54YL3|INT11_DICDI Integrator complex subunit 11 homolog OS=Dictyostelium discoideum
GN=ints11 PE=3 SV=1
Length = 744
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 34/68 (50%)
Query: 50 ESGSVLVPCYPSGVIYDLFECLSSHLDNSSLTQIPMFFISPVADISLAYSNILAEWNTKV 109
+ G VL+P + G + +L + S+ + +L IP++F + +A+ + Y + W +
Sbjct: 230 KGGKVLIPVFALGRVQELCILIDSYWEQMNLGHIPIYFSAGLAEKANLYYKLFINWTNQK 289
Query: 110 EVQILSKK 117
Q K+
Sbjct: 290 IKQTFVKR 297
>sp|Q12102|CFT2_YEAST Cleavage factor two protein 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=CFT2 PE=1 SV=1
Length = 859
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 46 KNQNESGSVLVPCYPSGVIYDLF----ECLSSHLDNSSLTQIPMFFISPVADISLAYSNI 101
K + GSV++P SG DLF E L ++ TQ+P+ +S +L Y+
Sbjct: 236 KGLSSDGSVIIPVDMSGKFLDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKS 295
Query: 102 LAEW 105
+ EW
Sbjct: 296 MLEW 299
>sp|B3EKW5|FENR_CHLPB Ferredoxin--NADP reductase OS=Chlorobium phaeobacteroides (strain
BS1) GN=Cphamn1_1733 PE=3 SV=1
Length = 348
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 1 MFQNGDNL---DSLIASTASSNGQSKIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLVP 57
M +NGD++ D L T G + I +NNI+C R I++ E G L
Sbjct: 1 MKENGDSVSGQDELCDLTIIGGGPTGIFAAFQCGMNNISC-----RIIESMPELGGQLTA 55
Query: 58 CYPSGVIYDL 67
YP IYD+
Sbjct: 56 LYPEKHIYDV 65
>sp|Q97BH2|Y483_THEVO UPF0218 protein TV0483 OS=Thermoplasma volcanium (strain ATCC 51530
/ DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) GN=TV0483
PE=3 SV=2
Length = 166
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 48 QNESGSVLVPCYPSGVIYDLFECLSSHLDNSSLTQIPMFFISPVADISLAY 98
Q+E GS+ V P + +DL E + S ++N+ T+I + +A + + Y
Sbjct: 76 QHEEGSITVRNDPGTISFDLIEAIKSSIENNKPTRIEVIGEEDLAVLPIIY 126
>sp|E7NIP9|TDA11_YEASO Topoisomerase I damage affected protein 11 OS=Saccharomyces
cerevisiae (strain FostersO) GN=TDA11 PE=3 SV=1
Length = 478
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 19/108 (17%)
Query: 8 LDSLIASTASSNGQSKIAVLLHS----DLNNITCDEKWMRDIKNQ---NESGSVLVPCYP 60
++S+IA+T +NG ++ LL S +L + C +K + D+K Q E C
Sbjct: 165 VNSMIATTIPTNG-VDVSALLQSLATKELELLECKQK-IEDLKKQTQHEEQNYTRRACE- 221
Query: 61 SGVIYDLFECLSSHLDNSSLTQIPMFFISPVADISLAYSNILAEWNTK 108
+++L E +S HLD S T + SPV Y NI E T+
Sbjct: 222 ---LHELKEQVSKHLDPSLNTPVKNRAFSPV------YQNIPLESRTE 260
>sp|A3LN86|PAN1_PICST Actin cytoskeleton-regulatory complex protein PAN1
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAN1 PE=3 SV=2
Length = 1373
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 19 NGQSKIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLVP 57
NG S +LL S L +T E W + + N+SGS+L P
Sbjct: 136 NGDSASTILLRSGLTPVTLAEIW--SLSDTNKSGSLLFP 172
>sp|B5VK87|TDA11_YEAS6 Topoisomerase I damage affected protein 11 OS=Saccharomyces
cerevisiae (strain AWRI1631) GN=TDA11 PE=3 SV=1
Length = 481
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 8 LDSLIASTASSNGQSKIAVLLHS----DLNNITCDEKWMRDIKNQNESGSVLVPCYPSGV 63
++S+IA+T +NG ++ LL S +L + C +K + D+K Q + +
Sbjct: 162 VNSMIATTIPTNG-VDVSALLQSLATKELELLECKQK-IEDLKKQTQHEEQNY-TRRARE 218
Query: 64 IYDLFECLSSHLDNSSLTQIPMFFISPVADISLAYSNILAEWNTK 108
+++L E +S HLD S T + SPV Y NI E T+
Sbjct: 219 LHELKEQVSKHLDPSLNTPVKNRAFSPV------YQNIPLESRTE 257
>sp|E7KPK0|TDA11_YEASL Topoisomerase I damage affected protein 11 OS=Saccharomyces
cerevisiae (strain Lalvin QA23) GN=TDA11 PE=3 SV=1
Length = 475
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 8 LDSLIASTASSNGQSKIAVLLHS----DLNNITCDEKWMRDIKNQNESGSVLVPCYPSGV 63
++S+IA+T +NG ++ LL S +L + C +K + D+K Q + +
Sbjct: 162 VNSMIATTIPTNG-VDVSALLQSLATKELELLECKQK-IEDLKKQTQHEEQNY-TRRARE 218
Query: 64 IYDLFECLSSHLDNSSLTQIPMFFISPVADISLAYSNILAEWNTK 108
+++L E +S HLD S T + SPV Y NI E T+
Sbjct: 219 LHELKEQVSKHLDPSLNTPVKNRAFSPV------YQNIPLESRTE 257
>sp|E7KDI6|TDA11_YEASA Topoisomerase I damage affected protein 11 OS=Saccharomyces
cerevisiae (strain AWRI796) GN=TDA11 PE=3 SV=1
Length = 446
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 8 LDSLIASTASSNGQSKIAVLLHS----DLNNITCDEKWMRDIKNQNESGSVLVPCYPSGV 63
++S+IA+T +NG ++ LL S +L + C +K + D+K Q + +
Sbjct: 162 VNSMIATTIPTNG-VDVSALLQSLATKELELLECKQK-IEDLKKQTQHEEQNY-TRRARE 218
Query: 64 IYDLFECLSSHLDNSSLTQIPMFFISPVADISLAYSNILAEWNTK 108
+++L E +S HLD S T + SPV Y NI E T+
Sbjct: 219 LHELKEQVSKHLDPSLNTPVKNRAFSPV------YQNIPLESRTE 257
>sp|E7QFR8|TDA11_YEASZ Topoisomerase I damage affected protein 11 OS=Saccharomyces
cerevisiae (strain Zymaflore VL3) GN=TDA11 PE=3 SV=1
Length = 499
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 8 LDSLIASTASSNGQSKIAVLLHS----DLNNITCDEKWMRDIKNQNESGSVLVPCYPSGV 63
++S+IA+T +NG ++ LL S +L + C +K + D+K Q + +
Sbjct: 162 VNSMIATTIPTNG-VDVSALLQSLATKELELLECKQK-IEDLKKQTQHEEQNY-TRRARE 218
Query: 64 IYDLFECLSSHLDNSSLTQIPMFFISPVADISLAYSNILAEWNTK 108
+++L E +S HLD S T + SPV Y NI E T+
Sbjct: 219 LHELKEQVSKHLDPSLNTPVKNRAFSPV------YQNIPLESRTE 257
>sp|P38854|TDA11_YEAST Topoisomerase I damage affected protein 11 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TDA11 PE=1
SV=1
Length = 504
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 8 LDSLIASTASSNGQSKIAVLLHS----DLNNITCDEKWMRDIKNQNESGSVLVPCYPSGV 63
++S+IA+T +NG ++ LL S +L + C +K + D+K Q + +
Sbjct: 162 VNSMIATTIPTNG-VDVSALLQSLATKELELLECKQK-IEDLKKQTQHEEQNY-TRRARE 218
Query: 64 IYDLFECLSSHLDNSSLTQIPMFFISPVADISLAYSNILAEWNTK 108
+++L E +S HLD S T + SPV Y NI E T+
Sbjct: 219 LHELKEQVSKHLDPSLNTPVKNRAFSPV------YQNIPLESRTE 257
>sp|C7GJX9|TDA11_YEAS2 Topoisomerase I damage affected protein 11 OS=Saccharomyces
cerevisiae (strain JAY291) GN=TDA11 PE=3 SV=1
Length = 504
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 8 LDSLIASTASSNGQSKIAVLLHS----DLNNITCDEKWMRDIKNQNESGSVLVPCYPSGV 63
++S+IA+T +NG ++ LL S +L + C +K + D+K Q + +
Sbjct: 162 VNSMIATTIPTNG-VDVSALLQSLATKELELLECKQK-IEDLKKQTQHEEQNY-TRRARE 218
Query: 64 IYDLFECLSSHLDNSSLTQIPMFFISPVADISLAYSNILAEWNTK 108
+++L E +S HLD S T + SPV Y NI E T+
Sbjct: 219 LHELKEQVSKHLDPSLNTPVKNRAFSPV------YQNIPLESRTE 257
>sp|B3LSS3|TDA11_YEAS1 Topoisomerase I damage affected protein 11 OS=Saccharomyces
cerevisiae (strain RM11-1a) GN=TDA11 PE=3 SV=1
Length = 504
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 8 LDSLIASTASSNGQSKIAVLLHS----DLNNITCDEKWMRDIKNQNESGSVLVPCYPSGV 63
++S+IA+T +NG ++ LL S +L + C +K + D+K Q + +
Sbjct: 162 VNSMIATTIPTNG-VDVSALLQSLATKELELLECKQK-IEDLKKQTQHEEQNY-TRRARE 218
Query: 64 IYDLFECLSSHLDNSSLTQIPMFFISPVADISLAYSNILAEWNTK 108
+++L E +S HLD S T + SPV Y NI E T+
Sbjct: 219 LHELKEQVSKHLDPSLNTPVKNRAFSPV------YQNIPLESRTE 257
>sp|C8Z9V6|TDA11_YEAS8 Topoisomerase I damage affected protein 11 OS=Saccharomyces
cerevisiae (strain Lalvin EC1118 / Prise de mousse)
GN=TDA11 PE=3 SV=1
Length = 504
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 8 LDSLIASTASSNGQSKIAVLLHS----DLNNITCDEKWMRDIKNQNESGSVLVPCYPSGV 63
++S+IA+T +NG ++ LL S +L + C +K + D+K Q + +
Sbjct: 162 VNSMIATTIPTNG-VDVSALLQSLATKELELLECKQK-IEDLKKQTQHEEQNY-TRRARE 218
Query: 64 IYDLFECLSSHLDNSSLTQIPMFFISPVADISLAYSNILAEWNTK 108
+++L E +S HLD S T + SPV Y NI E T+
Sbjct: 219 LHELKEQVSKHLDPSLNTPVKNRAFSPV------YQNIPLESRTE 257
>sp|A6ZT67|TDA11_YEAS7 Topoisomerase I damage affected protein 11 OS=Saccharomyces
cerevisiae (strain YJM789) GN=TDA11 PE=3 SV=1
Length = 507
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 8 LDSLIASTASSNGQSKIAVLLHS----DLNNITCDEKWMRDIKNQNESGSVLVPCYPSGV 63
++S+IA+T +NG ++ LL S +L + C +K + D+K Q + +
Sbjct: 165 VNSMIATTIPTNG-VDVSALLQSLATKELELLECKQK-IEDLKKQTQHEEQNY-TRRARE 221
Query: 64 IYDLFECLSSHLDNSSLTQIPMFFISPVADISLAYSNILAEWNTK 108
+++L E +S HLD S T + SPV Y NI E T+
Sbjct: 222 LHELKEQVSKHLDPSLNTPVKNRAFSPV------YQNIPLESRTE 260
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,327,495
Number of Sequences: 539616
Number of extensions: 1495442
Number of successful extensions: 3324
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 3307
Number of HSP's gapped (non-prelim): 31
length of query: 118
length of database: 191,569,459
effective HSP length: 85
effective length of query: 33
effective length of database: 145,702,099
effective search space: 4808169267
effective search space used: 4808169267
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)