Query psy9123
Match_columns 118
No_of_seqs 105 out of 378
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 19:30:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9123.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9123hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03675 arCOG00543 arCOG0054 99.8 1.1E-18 2.4E-23 154.1 11.3 91 22-113 363-463 (630)
2 COG1782 Predicted metal-depend 99.7 8.8E-18 1.9E-22 146.8 5.3 84 32-116 389-472 (637)
3 KOG1138|consensus 99.7 7.7E-17 1.7E-21 140.9 6.4 92 22-113 257-355 (653)
4 COG1236 YSH1 Predicted exonucl 99.5 2.5E-14 5.3E-19 121.2 8.9 89 24-115 181-277 (427)
5 KOG1136|consensus 99.5 1.9E-14 4E-19 122.2 5.6 79 36-115 217-295 (501)
6 KOG1135|consensus 99.4 3.7E-13 7.9E-18 120.6 9.1 83 34-116 209-293 (764)
7 KOG1137|consensus 99.4 1.8E-13 3.9E-18 120.7 6.1 93 20-112 196-297 (668)
8 PF10996 Beta-Casp: Beta-Casp 99.3 7.6E-12 1.6E-16 87.5 5.6 52 64-115 1-53 (126)
9 TIGR00649 MG423 conserved hypo 97.2 0.0026 5.7E-08 53.4 8.5 78 22-107 182-268 (422)
10 PRK11188 rrmJ 23S rRNA methylt 92.0 0.27 5.9E-06 37.8 4.3 58 21-78 115-185 (209)
11 PF02522 Antibiotic_NAT: Amino 86.1 1.1 2.3E-05 35.2 3.8 37 27-63 1-42 (229)
12 PRK05728 DNA polymerase III su 85.5 6.2 0.00013 28.9 7.4 57 32-88 10-76 (142)
13 COG2927 HolC DNA polymerase II 85.1 3.2 7E-05 31.5 5.8 54 37-90 15-78 (144)
14 TIGR00438 rrmJ cell division p 84.7 2.9 6.3E-05 31.0 5.4 57 21-77 96-165 (188)
15 TIGR00406 prmA ribosomal prote 84.4 2.8 6E-05 33.6 5.6 52 22-74 224-275 (288)
16 COG0293 FtsJ 23S rRNA methylas 84.3 1.4 3E-05 35.0 3.7 58 20-78 108-179 (205)
17 PRK00377 cbiT cobalt-precorrin 83.0 3.2 6.8E-05 31.1 5.0 51 22-73 110-160 (198)
18 PF10294 Methyltransf_16: Puta 82.7 1.5 3.3E-05 32.7 3.2 37 22-58 118-156 (173)
19 PF12847 Methyltransf_18: Meth 82.2 2.4 5.2E-05 27.9 3.7 39 18-56 65-109 (112)
20 PF01728 FtsJ: FtsJ-like methy 81.3 2.3 5E-05 31.1 3.7 58 20-78 88-159 (181)
21 PF08241 Methyltransf_11: Meth 81.1 1.9 4.1E-05 27.0 2.8 36 21-56 58-95 (95)
22 PRK00517 prmA ribosomal protei 80.7 4.5 9.7E-05 31.6 5.3 50 23-73 179-228 (250)
23 TIGR02469 CbiT precorrin-6Y C5 79.8 2.9 6.4E-05 27.6 3.5 36 22-58 87-122 (124)
24 PRK10258 biotin biosynthesis p 79.3 5.9 0.00013 30.4 5.5 51 21-71 101-153 (251)
25 PF07090 DUF1355: Protein of u 78.7 3.1 6.6E-05 32.1 3.7 38 20-57 64-107 (177)
26 PRK08287 cobalt-precorrin-6Y C 77.6 5.6 0.00012 29.3 4.8 51 22-73 96-146 (187)
27 cd02440 AdoMet_MTases S-adenos 76.6 7.3 0.00016 23.5 4.4 37 20-56 63-102 (107)
28 PRK00811 spermidine synthase; 75.5 7.3 0.00016 31.3 5.2 58 21-79 148-216 (283)
29 KOG3201|consensus 75.3 4.6 9.9E-05 32.1 3.9 57 11-67 91-149 (201)
30 TIGR00091 tRNA (guanine-N(7)-) 74.9 5.9 0.00013 29.7 4.3 38 38-75 112-149 (194)
31 PRK04266 fibrillarin; Provisio 74.2 4.6 9.9E-05 31.7 3.7 35 22-56 140-174 (226)
32 TIGR00417 speE spermidine synt 74.1 8.2 0.00018 30.6 5.2 57 21-78 143-210 (270)
33 TIGR00537 hemK_rel_arch HemK-r 73.1 7.4 0.00016 28.5 4.4 37 37-73 119-155 (179)
34 TIGR00138 gidB 16S rRNA methyl 72.6 10 0.00022 28.6 5.1 55 21-78 107-161 (181)
35 PF04364 DNA_pol3_chi: DNA pol 70.7 10 0.00022 27.6 4.6 55 37-91 15-79 (137)
36 PRK10664 transcriptional regul 70.7 7.1 0.00015 26.6 3.6 44 10-60 5-48 (90)
37 PRK10753 transcriptional regul 69.7 6 0.00013 26.9 3.0 44 10-60 5-48 (90)
38 PRK03612 spermidine synthase; 69.4 10 0.00022 33.2 5.1 52 22-74 372-435 (521)
39 COG2242 CobL Precorrin-6B meth 68.8 13 0.00029 29.2 5.1 51 22-74 101-151 (187)
40 cd03143 A4_beta-galactosidase_ 68.2 7.4 0.00016 27.8 3.4 35 21-56 51-85 (154)
41 PRK00121 trmB tRNA (guanine-N( 67.9 14 0.00029 28.0 5.0 37 37-73 135-171 (202)
42 TIGR00452 methyltransferase, p 66.7 15 0.00034 30.4 5.4 89 22-114 187-297 (314)
43 PRK11207 tellurite resistance 66.3 8.6 0.00019 28.9 3.6 34 23-56 95-132 (197)
44 PRK00199 ihfB integration host 63.9 12 0.00026 25.2 3.6 26 34-59 23-48 (94)
45 PF09837 DUF2064: Uncharacteri 63.9 16 0.00036 26.1 4.5 56 3-59 40-96 (122)
46 PLN02232 ubiquinone biosynthes 63.5 35 0.00076 24.8 6.3 42 21-62 42-85 (160)
47 TIGR00477 tehB tellurite resis 61.0 13 0.00029 27.9 3.7 35 22-56 93-131 (195)
48 PLN02366 spermidine synthase 60.8 26 0.00056 29.0 5.7 54 21-75 163-227 (308)
49 PRK06646 DNA polymerase III su 59.6 36 0.00079 25.6 5.9 57 32-88 10-76 (154)
50 TIGR00988 hip integration host 59.1 17 0.00036 24.4 3.6 27 33-59 22-48 (94)
51 PF13829 DUF4191: Domain of un 58.5 9.9 0.00021 30.8 2.8 47 41-88 113-159 (224)
52 PRK13730 conjugal transfer pil 57.6 48 0.001 26.7 6.5 80 7-89 72-169 (212)
53 PF09822 ABC_transp_aux: ABC-t 57.4 12 0.00026 29.3 3.1 42 21-62 195-236 (271)
54 TIGR02072 BioC biotin biosynth 56.9 29 0.00062 25.5 4.9 40 21-60 96-137 (240)
55 COG4098 comFA Superfamily II D 56.3 17 0.00036 32.0 3.9 63 18-80 111-173 (441)
56 PTZ00146 fibrillarin; Provisio 56.1 14 0.00031 30.7 3.4 34 23-56 202-235 (293)
57 PRK00536 speE spermidine synth 56.0 32 0.0007 28.0 5.4 53 21-76 137-193 (262)
58 PRK13974 thymidylate kinase; P 55.7 36 0.00078 25.8 5.4 58 37-95 81-149 (212)
59 KOG3348|consensus 55.6 8.5 0.00018 27.0 1.7 19 17-35 27-45 (85)
60 smart00138 MeTrc Methyltransfe 54.8 17 0.00038 28.9 3.6 36 21-56 201-240 (264)
61 PF00782 DSPc: Dual specificit 53.9 23 0.00049 24.2 3.7 36 33-68 55-91 (133)
62 PRK00107 gidB 16S rRNA methylt 52.9 33 0.00071 26.1 4.7 47 21-70 110-156 (187)
63 PRK10634 tRNA(ANN) t(6)A37 thr 52.5 17 0.00036 27.9 3.1 20 42-61 11-30 (190)
64 PF06325 PrmA: Ribosomal prote 52.2 16 0.00034 30.2 3.0 51 21-72 223-273 (295)
65 PRK00312 pcm protein-L-isoaspa 51.8 13 0.00029 27.8 2.4 34 22-59 143-176 (212)
66 PLN02396 hexaprenyldihydroxybe 51.6 13 0.00029 30.8 2.6 38 22-59 197-236 (322)
67 PRK05253 sulfate adenylyltrans 51.3 75 0.0016 26.3 6.9 70 33-104 9-81 (301)
68 PRK12335 tellurite resistance 50.9 24 0.00052 28.1 3.8 36 21-56 182-221 (287)
69 PLN03194 putative disease resi 50.8 16 0.00034 28.8 2.7 49 3-59 65-116 (187)
70 PRK00285 ihfA integration host 50.8 27 0.00058 23.7 3.6 45 8-59 5-49 (99)
71 TIGR03534 RF_mod_PrmC protein- 50.6 66 0.0014 24.1 6.1 46 38-88 197-242 (251)
72 PRK14968 putative methyltransf 50.3 43 0.00093 23.8 4.8 36 37-72 127-162 (188)
73 PRK12563 sulfate adenylyltrans 49.5 40 0.00086 28.4 5.1 71 31-103 17-90 (312)
74 PRK13942 protein-L-isoaspartat 49.4 20 0.00043 27.4 3.0 36 21-60 143-178 (212)
75 KOG0406|consensus 49.3 18 0.00039 29.3 2.9 48 20-68 55-102 (231)
76 PRK00414 gmhA phosphoheptose i 49.2 86 0.0019 23.8 6.5 33 46-78 106-138 (192)
77 PF01582 TIR: TIR domain; Int 48.7 28 0.0006 24.5 3.5 41 20-60 53-97 (141)
78 PF00216 Bac_DNA_binding: Bact 48.3 33 0.00071 22.3 3.6 26 34-59 22-47 (90)
79 PF10131 PTPS_related: 6-pyruv 48.2 21 0.00046 32.2 3.5 54 16-69 480-538 (616)
80 smart00411 BHL bacterial (prok 47.8 33 0.00071 22.4 3.6 26 34-59 22-47 (90)
81 PF08484 Methyltransf_14: C-me 47.5 30 0.00064 26.0 3.7 34 23-58 126-159 (160)
82 TIGR00044 pyridoxal phosphate 46.9 40 0.00088 26.2 4.5 52 41-99 40-92 (229)
83 PF14829 GPAT_N: Glycerol-3-ph 46.8 46 0.001 22.9 4.2 32 65-103 12-43 (77)
84 PLN02781 Probable caffeoyl-CoA 46.5 33 0.00072 26.8 4.0 35 21-56 142-176 (234)
85 TIGR00740 methyltransferase, p 46.5 66 0.0014 24.5 5.5 54 23-76 122-182 (239)
86 PF13489 Methyltransf_23: Meth 46.5 21 0.00045 24.5 2.6 42 20-61 75-118 (161)
87 TIGR00057 Sua5/YciO/YrdC/YwlC 46.4 21 0.00046 27.4 2.8 21 41-61 11-31 (201)
88 CHL00123 rps6 ribosomal protei 45.8 33 0.00071 23.7 3.4 49 24-73 10-58 (97)
89 TIGR00080 pimt protein-L-isoas 45.8 13 0.00028 28.1 1.6 35 22-60 145-179 (215)
90 PLN03210 Resistant to P. syrin 45.6 25 0.00055 33.6 3.7 39 20-59 64-105 (1153)
91 TIGR00530 AGP_acyltrn 1-acyl-s 45.3 29 0.00064 23.1 3.1 17 39-55 77-93 (130)
92 PRK07402 precorrin-6B methylas 44.5 49 0.0011 24.5 4.4 39 36-74 120-158 (196)
93 PF13580 SIS_2: SIS domain; PD 44.3 32 0.00069 24.5 3.3 59 33-92 17-77 (138)
94 PRK11036 putative S-adenosyl-L 44.2 22 0.00049 27.5 2.7 36 22-58 111-149 (255)
95 PRK14967 putative methyltransf 43.9 59 0.0013 24.7 4.9 36 37-72 138-173 (223)
96 TIGR00987 himA integration hos 43.9 40 0.00086 22.8 3.6 27 33-59 22-48 (96)
97 PF03358 FMN_red: NADPH-depend 43.8 29 0.00064 24.3 3.0 30 23-52 2-31 (152)
98 cd04195 GT2_AmsE_like GT2_AmsE 43.7 80 0.0017 22.3 5.3 26 53-78 1-26 (201)
99 PTZ00098 phosphoethanolamine N 43.0 1.6E+02 0.0036 23.1 9.8 38 21-58 115-156 (263)
100 PF13793 Pribosyltran_N: N-ter 42.7 44 0.00096 23.7 3.8 38 25-63 49-93 (116)
101 PRK00347 putative DNA-binding 42.7 12 0.00025 30.1 0.9 57 20-79 114-171 (234)
102 PF08900 DUF1845: Domain of un 42.5 1.2E+02 0.0026 23.9 6.6 44 62-105 76-131 (217)
103 PF08532 Glyco_hydro_42M: Beta 42.2 25 0.00055 26.7 2.6 39 21-60 55-93 (207)
104 PF14871 GHL6: Hypothetical gl 42.1 13 0.00029 27.1 1.0 39 65-107 43-81 (132)
105 PLN02233 ubiquinone biosynthes 42.1 1E+02 0.0022 24.2 6.2 40 21-60 143-184 (261)
106 PF01300 Sua5_yciO_yrdC: Telom 41.7 15 0.00033 27.4 1.4 44 46-89 1-50 (179)
107 COG1129 MglA ABC-type sugar tr 41.2 73 0.0016 28.6 5.6 57 38-99 151-212 (500)
108 COG1042 Acyl-CoA synthetase (N 41.2 54 0.0012 29.9 4.9 77 29-111 382-459 (598)
109 PRK11630 hypothetical protein; 41.2 28 0.00062 26.9 2.8 20 42-61 18-37 (206)
110 PLN02336 phosphoethanolamine N 40.8 2.2E+02 0.0048 24.0 9.1 36 22-57 331-368 (475)
111 PRK08317 hypothetical protein; 40.6 45 0.00098 24.3 3.7 35 22-56 86-122 (241)
112 PF05762 VWA_CoxE: VWA domain 40.4 50 0.0011 25.5 4.1 43 35-78 134-179 (222)
113 PLN03075 nicotianamine synthas 40.2 33 0.00071 28.6 3.2 48 21-70 193-243 (296)
114 PF13847 Methyltransf_31: Meth 40.1 51 0.0011 23.2 3.8 39 22-60 72-112 (152)
115 PRK05642 DNA replication initi 40.0 47 0.001 25.8 3.9 38 23-60 97-139 (234)
116 COG2264 PrmA Ribosomal protein 40.0 38 0.00082 28.4 3.5 49 22-71 228-276 (300)
117 PRK09328 N5-glutamine S-adenos 40.0 1E+02 0.0022 23.7 5.7 22 38-59 218-239 (275)
118 PF03749 SfsA: Sugar fermentat 39.7 10 0.00022 30.1 0.1 57 19-79 101-157 (215)
119 PRK00698 tmk thymidylate kinas 39.3 86 0.0019 22.7 5.0 58 37-94 74-141 (205)
120 PRK13973 thymidylate kinase; P 39.3 81 0.0018 23.9 5.0 61 35-95 73-143 (213)
121 PF01182 Glucosamine_iso: Gluc 39.2 44 0.00095 25.4 3.6 41 34-75 3-44 (199)
122 PRK13944 protein-L-isoaspartat 38.8 34 0.00074 25.8 2.9 35 22-60 141-175 (205)
123 PRK15451 tRNA cmo(5)U34 methyl 38.3 87 0.0019 24.2 5.2 58 23-80 125-190 (247)
124 PF13245 AAA_19: Part of AAA d 38.3 1.1E+02 0.0024 19.8 6.8 60 43-102 2-62 (76)
125 COG4865 Glutamate mutase epsil 38.1 94 0.002 27.5 5.7 69 38-109 46-114 (485)
126 PF06819 Arc_PepC: Archaeal Pe 37.9 28 0.00061 25.4 2.2 49 34-82 56-106 (110)
127 PRK11524 putative methyltransf 37.8 74 0.0016 25.4 4.8 29 38-67 60-88 (284)
128 TIGR01983 UbiG ubiquinone bios 37.5 37 0.00081 25.2 2.9 37 22-58 111-149 (224)
129 smart00828 PKS_MT Methyltransf 37.5 30 0.00065 25.8 2.4 37 22-58 66-104 (224)
130 PF13036 DUF3897: Protein of u 37.3 1.5E+02 0.0032 22.0 6.1 53 19-74 58-115 (180)
131 PF11305 DUF3107: Protein of u 37.1 39 0.00085 22.9 2.6 34 26-62 14-58 (74)
132 PRK01581 speE spermidine synth 37.0 1.1E+02 0.0024 26.5 6.0 36 22-58 225-268 (374)
133 TIGR03521 GldG gliding-associa 37.0 37 0.00081 30.0 3.2 40 22-61 233-272 (552)
134 cd06301 PBP1_rhizopine_binding 36.6 1.3E+02 0.0029 22.2 5.8 47 22-71 29-77 (272)
135 PRK13938 phosphoheptose isomer 36.5 1.8E+02 0.0038 22.4 6.6 70 41-111 104-188 (196)
136 PRK01683 trans-aconitate 2-met 36.3 46 0.001 25.5 3.3 35 22-56 92-128 (258)
137 PF01739 CheR: CheR methyltran 36.2 23 0.00051 27.3 1.6 38 19-56 132-173 (196)
138 PF01250 Ribosomal_S6: Ribosom 36.1 90 0.0019 20.6 4.3 39 25-63 6-44 (92)
139 PRK00453 rpsF 30S ribosomal pr 35.9 64 0.0014 22.3 3.7 49 25-74 7-55 (108)
140 PF08351 DUF1726: Domain of un 35.6 28 0.0006 23.9 1.8 47 22-69 10-56 (92)
141 PF05116 S6PP: Sucrose-6F-phos 35.4 36 0.00078 26.7 2.6 63 26-95 3-72 (247)
142 TIGR01934 MenG_MenH_UbiE ubiqu 35.3 72 0.0016 23.2 4.1 36 22-57 105-142 (223)
143 COG0541 Ffh Signal recognition 35.3 1.7E+02 0.0037 26.2 6.9 74 32-106 163-239 (451)
144 TIGR01201 HU_rel DNA-binding p 35.3 45 0.00097 24.5 3.0 22 58-79 49-70 (145)
145 PF00308 Bac_DnaA: Bacterial d 35.0 2E+02 0.0043 22.1 6.7 79 23-105 97-181 (219)
146 PF11899 DUF3419: Protein of u 34.8 82 0.0018 27.0 4.9 43 20-62 292-338 (380)
147 TIGR02752 MenG_heptapren 2-hep 34.3 70 0.0015 23.9 4.0 39 21-59 112-152 (231)
148 PRK05134 bifunctional 3-demeth 34.0 50 0.0011 24.8 3.1 37 22-58 113-151 (233)
149 TIGR00166 S6 ribosomal protein 33.0 68 0.0015 21.5 3.4 61 25-90 6-66 (93)
150 KOG1270|consensus 32.9 40 0.00086 28.3 2.6 37 22-58 157-195 (282)
151 PRK13938 phosphoheptose isomer 32.6 2.3E+02 0.005 21.8 7.5 57 32-90 26-85 (196)
152 PRK10886 DnaA initiator-associ 32.3 2.4E+02 0.0051 21.8 7.7 77 34-113 24-106 (196)
153 PF14894 Lsm_C: Lsm C-terminal 32.1 40 0.00086 22.5 2.0 22 86-110 42-63 (64)
154 PF13401 AAA_22: AAA domain; P 32.0 1.5E+02 0.0033 19.6 5.2 52 34-88 69-122 (131)
155 PF00891 Methyltransf_2: O-met 31.8 41 0.00089 25.6 2.4 33 24-56 159-197 (241)
156 PF05401 NodS: Nodulation prot 31.8 48 0.001 26.4 2.8 39 21-59 104-147 (201)
157 TIGR00640 acid_CoA_mut_C methy 31.7 1.8E+02 0.004 20.9 5.7 44 45-88 47-90 (132)
158 cd00591 HU_IHF Integration hos 31.5 85 0.0018 20.2 3.5 26 34-59 21-46 (87)
159 PRK10611 chemotaxis methyltran 31.4 65 0.0014 26.5 3.6 38 21-58 221-262 (287)
160 COG2025 FixB Electron transfer 31.4 1.6E+02 0.0034 24.9 5.9 65 13-79 41-107 (313)
161 PRK04457 spermidine synthase; 30.5 1.3E+02 0.0028 23.9 5.0 54 22-76 135-196 (262)
162 PRK00553 ribose-phosphate pyro 30.5 81 0.0018 26.4 4.1 39 25-64 58-103 (332)
163 TIGR02716 C20_methyl_CrtF C-20 30.0 60 0.0013 25.8 3.1 34 24-57 216-253 (306)
164 PRK08178 acetolactate synthase 29.9 44 0.00094 23.7 2.0 42 3-47 31-72 (96)
165 PF13649 Methyltransf_25: Meth 29.8 46 0.00099 21.7 2.0 31 22-52 66-101 (101)
166 PRK06737 acetolactate synthase 29.7 41 0.00089 22.6 1.8 41 4-46 26-66 (76)
167 cd06318 PBP1_ABC_sugar_binding 29.4 2.1E+02 0.0045 21.3 5.8 36 23-60 29-66 (282)
168 COG0009 SUA5 Putative translat 29.4 66 0.0014 25.5 3.2 23 39-61 14-36 (211)
169 PLN02336 phosphoethanolamine N 29.3 84 0.0018 26.6 4.0 36 21-56 101-140 (475)
170 PF02519 Auxin_inducible: Auxi 28.9 97 0.0021 21.7 3.7 49 22-71 39-99 (100)
171 PF14258 DUF4350: Domain of un 28.9 1.1E+02 0.0023 19.1 3.6 17 41-57 53-69 (70)
172 COG4825 Uncharacterized membra 28.7 42 0.00092 29.0 2.1 26 42-67 236-267 (395)
173 PF06283 ThuA: Trehalose utili 28.7 76 0.0016 24.0 3.3 37 22-58 51-88 (217)
174 TIGR02021 BchM-ChlM magnesium 28.6 2.3E+02 0.0049 21.2 5.9 67 22-91 118-188 (219)
175 cd02030 NDUO42 NADH:Ubiquinone 28.5 2.6E+02 0.0057 21.2 7.1 62 35-96 80-158 (219)
176 PRK07199 phosphoribosylpyropho 28.3 92 0.002 25.6 4.0 38 25-63 51-94 (301)
177 PRK14103 trans-aconitate 2-met 27.7 74 0.0016 24.5 3.2 36 22-57 88-125 (255)
178 PRK00216 ubiE ubiquinone/menaq 27.5 92 0.002 22.9 3.6 37 21-57 119-157 (239)
179 PRK10528 multifunctional acyl- 27.4 2.5E+02 0.0055 20.6 7.6 50 37-86 94-149 (191)
180 cd03089 PMM_PGM The phosphoman 27.3 3.8E+02 0.0082 22.7 7.6 66 30-98 13-80 (443)
181 PF05219 DREV: DREV methyltran 27.3 72 0.0016 26.5 3.2 38 20-57 148-187 (265)
182 PF02593 dTMP_synthase: Thymid 27.2 1.6E+02 0.0035 23.5 5.1 65 21-90 49-117 (217)
183 COG0776 HimA Bacterial nucleoi 27.2 96 0.0021 21.8 3.4 29 32-60 21-49 (94)
184 TIGR00041 DTMP_kinase thymidyl 27.1 2.3E+02 0.0049 20.4 5.6 57 38-95 76-142 (195)
185 PLN02490 MPBQ/MSBQ methyltrans 27.1 87 0.0019 26.4 3.7 35 22-56 177-213 (340)
186 PRK00414 gmhA phosphoheptose i 26.9 85 0.0018 23.8 3.3 39 31-71 24-62 (192)
187 TIGR00730 conserved hypothetic 26.8 2.8E+02 0.0061 21.0 6.2 55 49-111 96-150 (178)
188 PLN02382 probable sucrose-phos 26.8 91 0.002 26.7 3.8 49 24-75 8-66 (413)
189 PLN02244 tocopherol O-methyltr 26.7 80 0.0017 25.9 3.4 38 22-59 185-224 (340)
190 PF08242 Methyltransf_12: Meth 26.7 43 0.00093 21.6 1.5 33 22-54 65-99 (99)
191 cd02503 MobA MobA catalyzes th 26.4 1.2E+02 0.0025 21.7 3.8 37 23-60 85-121 (181)
192 PF03818 MadM: Malonate/sodium 26.2 75 0.0016 20.9 2.5 38 42-81 2-40 (60)
193 PRK05578 cytidine deaminase; V 26.1 27 0.00059 25.5 0.4 47 57-110 82-129 (131)
194 PF00580 UvrD-helicase: UvrD/R 26.1 2.9E+02 0.0063 20.9 6.5 59 50-108 12-71 (315)
195 COG2185 Sbm Methylmalonyl-CoA 26.0 1.6E+02 0.0035 22.2 4.6 61 24-89 41-101 (143)
196 TIGR03840 TMPT_Se_Te thiopurin 25.8 80 0.0017 24.4 3.0 30 31-60 125-154 (213)
197 PRK15399 lysine decarboxylase 25.7 5.7E+02 0.012 24.1 9.7 61 28-90 6-84 (713)
198 PRK15068 tRNA mo(5)U34 methylt 25.7 85 0.0018 25.8 3.3 37 21-57 187-225 (322)
199 PF13710 ACT_5: ACT domain; PD 25.6 31 0.00067 21.9 0.6 41 4-46 16-56 (63)
200 PF09181 ProRS-C_2: Prolyl-tRN 25.6 49 0.0011 22.2 1.5 24 37-60 11-35 (68)
201 COG1352 CheR Methylase of chem 25.4 1E+02 0.0022 25.2 3.7 38 20-57 199-240 (268)
202 cd01653 GATase1 Type 1 glutami 25.3 1.5E+02 0.0032 17.7 3.7 39 21-59 44-87 (115)
203 PF01120 Alpha_L_fucos: Alpha- 25.2 78 0.0017 26.2 3.1 30 29-58 285-314 (346)
204 PLN02476 O-methyltransferase 25.1 1.1E+02 0.0025 25.1 4.0 51 4-57 176-227 (278)
205 smart00812 Alpha_L_fucos Alpha 25.1 60 0.0013 27.7 2.4 47 32-78 281-333 (384)
206 cd07896 Adenylation_kDNA_ligas 24.7 1.8E+02 0.0039 21.1 4.6 54 24-79 95-149 (174)
207 PF03848 TehB: Tellurite resis 24.5 66 0.0014 25.1 2.3 38 22-59 93-134 (192)
208 PRK11088 rrmA 23S rRNA methylt 24.5 82 0.0018 24.7 2.9 45 22-71 150-194 (272)
209 TIGR02909 spore_YkwD uncharact 24.4 1.4E+02 0.0031 20.7 3.9 39 62-102 3-41 (127)
210 PRK09189 uroporphyrinogen-III 24.4 2.9E+02 0.0064 21.0 5.9 51 47-97 165-215 (240)
211 COG1832 Predicted CoA-binding 24.1 1.5E+02 0.0032 22.5 4.1 42 21-68 16-59 (140)
212 PF11074 DUF2779: Domain of un 24.0 1.9E+02 0.0041 21.0 4.6 44 31-74 51-97 (130)
213 PLN02589 caffeoyl-CoA O-methyl 23.9 1.3E+02 0.0029 24.0 4.1 59 4-63 137-196 (247)
214 PRK04923 ribose-phosphate pyro 23.9 1.1E+02 0.0025 25.4 3.8 38 25-63 55-99 (319)
215 TIGR00111 pelota probable tran 23.8 1.3E+02 0.0028 25.2 4.1 35 23-57 293-327 (351)
216 PRK13255 thiopurine S-methyltr 23.5 1.3E+02 0.0028 23.3 3.8 34 23-56 116-153 (218)
217 PF01722 BolA: BolA-like prote 23.5 68 0.0015 21.3 2.0 18 19-36 25-42 (76)
218 cd04104 p47_IIGP_like p47 (47- 23.4 2.5E+02 0.0054 20.7 5.3 43 70-112 144-189 (197)
219 COG0463 WcaA Glycosyltransfera 23.4 1.5E+02 0.0033 18.8 3.6 20 53-72 35-54 (291)
220 COG1806 Uncharacterized protei 23.3 4.5E+02 0.0097 22.0 7.8 79 21-102 1-83 (273)
221 TIGR01485 SPP_plant-cyano sucr 23.2 69 0.0015 24.5 2.3 35 36-73 22-56 (249)
222 PRK10886 DnaA initiator-associ 23.0 3.6E+02 0.0077 20.8 7.0 74 40-114 99-190 (196)
223 smart00255 TIR Toll - interleu 22.8 1.5E+02 0.0033 20.0 3.7 66 22-90 29-99 (140)
224 TIGR00036 dapB dihydrodipicoli 22.6 2.5E+02 0.0055 22.3 5.4 53 23-77 92-147 (266)
225 KOG3191|consensus 22.6 1.2E+02 0.0027 24.4 3.6 70 4-73 91-183 (209)
226 PLN02369 ribose-phosphate pyro 22.6 1.3E+02 0.0028 24.7 3.8 38 25-63 40-84 (302)
227 PRK09630 DNA topoisomerase IV 22.5 83 0.0018 28.3 2.8 45 18-62 150-194 (479)
228 PRK11705 cyclopropane fatty ac 22.3 1.1E+02 0.0023 25.9 3.4 37 22-58 227-267 (383)
229 TIGR03470 HpnH hopanoid biosyn 22.2 3.6E+02 0.0079 21.9 6.4 12 52-63 194-205 (318)
230 PRK06936 type III secretion sy 22.1 3.7E+02 0.008 23.7 6.7 77 22-105 186-271 (439)
231 PRK14873 primosome assembly pr 22.1 3E+02 0.0065 25.4 6.4 61 38-107 175-235 (665)
232 PF01596 Methyltransf_3: O-met 22.0 1.2E+02 0.0026 23.5 3.4 53 3-57 102-154 (205)
233 PF02353 CMAS: Mycolic acid cy 22.0 92 0.002 25.1 2.8 41 23-63 127-171 (273)
234 COG3324 Predicted enzyme relat 22.0 84 0.0018 23.2 2.4 39 17-62 66-104 (127)
235 PRK11873 arsM arsenite S-adeno 22.0 1.4E+02 0.003 23.1 3.7 35 22-56 145-181 (272)
236 PRK09694 helicase Cas3; Provis 21.9 1.8E+02 0.0039 27.8 5.1 37 38-74 547-583 (878)
237 cd06353 PBP1_BmpA_Med_like Per 21.9 3.8E+02 0.0083 20.8 6.3 55 23-77 1-56 (258)
238 COG1203 CRISPR-associated heli 21.8 1.2E+02 0.0027 27.8 3.9 44 39-89 428-471 (733)
239 PLN02360 probable 6-phosphoglu 21.6 1.5E+02 0.0032 23.7 3.9 37 37-74 27-63 (268)
240 PRK13543 cytochrome c biogenes 21.5 2.2E+02 0.0047 21.3 4.6 28 31-58 167-194 (214)
241 COG4972 PilM Tfp pilus assembl 21.4 1.3E+02 0.0028 26.1 3.7 50 16-66 131-180 (354)
242 PRK02458 ribose-phosphate pyro 21.4 1.5E+02 0.0031 24.8 3.9 39 25-64 58-103 (323)
243 PRK09966 putative inner membra 21.3 1.5E+02 0.0033 24.0 4.0 56 19-76 325-395 (407)
244 cd04501 SGNH_hydrolase_like_4 21.3 3.1E+02 0.0066 19.4 6.3 19 63-81 122-140 (183)
245 PF02390 Methyltransf_4: Putat 21.2 1.3E+02 0.0027 23.0 3.3 38 37-74 112-149 (195)
246 cd01989 STK_N The N-terminal d 21.1 2.8E+02 0.006 18.8 7.7 30 26-55 2-31 (146)
247 PF13671 AAA_33: AAA domain; P 21.1 2E+02 0.0043 19.4 4.0 55 36-92 55-109 (143)
248 TIGR03438 probable methyltrans 21.0 2.8E+02 0.006 22.3 5.4 33 33-65 152-184 (301)
249 PF05175 MTS: Methyltransferas 21.0 1.3E+02 0.0029 21.8 3.3 36 21-56 96-138 (170)
250 PF13659 Methyltransf_26: Meth 20.9 1.3E+02 0.0027 19.7 2.9 38 19-56 66-113 (117)
251 PRK01259 ribose-phosphate pyro 20.8 1.7E+02 0.0037 24.1 4.2 39 25-64 49-94 (309)
252 PF00270 DEAD: DEAD/DEAH box h 20.8 2.9E+02 0.0063 18.9 7.1 56 50-107 13-69 (169)
253 COG2746 Aminoglycoside N3'-ace 20.7 79 0.0017 26.1 2.2 34 26-59 32-74 (251)
254 COG1489 SfsA DNA-binding prote 20.7 39 0.00084 27.6 0.4 58 19-79 111-168 (235)
255 cd01539 PBP1_GGBP Periplasmic 20.7 3.7E+02 0.0081 20.7 5.9 45 13-60 22-68 (303)
256 COG0527 LysC Aspartokinases [A 20.6 1.5E+02 0.0033 25.9 4.1 43 33-75 15-57 (447)
257 PRK13937 phosphoheptose isomer 20.5 3.7E+02 0.008 20.0 6.8 32 47-78 102-133 (188)
258 PRK00934 ribose-phosphate pyro 20.5 1.6E+02 0.0035 23.8 4.0 39 25-64 48-92 (285)
259 PLN03194 putative disease resi 20.4 2.8E+02 0.0062 21.8 5.2 72 15-90 18-90 (187)
260 TIGR01329 cysta_beta_ly_E cyst 20.4 1.2E+02 0.0026 25.2 3.2 44 43-90 123-169 (378)
261 KOG1720|consensus 20.3 1.9E+02 0.0041 23.6 4.2 37 34-71 131-168 (225)
262 smart00775 LNS2 LNS2 domain. T 20.3 1.8E+02 0.0039 21.3 3.9 45 40-87 32-81 (157)
263 cd01400 6PGL 6PGL: 6-Phosphogl 20.2 1.1E+02 0.0024 23.5 2.9 39 32-71 3-41 (219)
264 PF09363 XFP_C: XFP C-terminal 20.2 75 0.0016 25.4 1.9 27 16-42 27-53 (203)
No 1
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=99.78 E-value=1.1e-18 Score=154.06 Aligned_cols=91 Identities=13% Similarity=0.202 Sum_probs=80.5
Q ss_pred ceeEEEEccc----------cchhhHHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHHhhcCCCCCCCEEEeChh
Q psy9123 22 SKIAVLLHSD----------LNNITCDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSHLDNSSLTQIPMFFISPV 91 (118)
Q Consensus 22 ~~~~~~~~~~----------~~~~~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l~~~~~Lp~iPIyldSPm 91 (118)
.++|+|+.-. ..++..++|++.|.+|+++||+||||+|++||+||||+.|+++|+++++|++|||+|| |
T Consensus 363 ~~vD~LI~ESTYg~~~~~~~~r~~~e~~l~~~I~~tl~~gG~VLIP~favGR~QEll~~L~~~~~~g~lp~~pIy~dg-~ 441 (630)
T TIGR03675 363 PRVETLIMESTYGGRDDYQPSREEAEKELIKVVNETIKRGGKVLIPVFAVGRAQEVMLVLEEAMRKGLIPEVPVYLDG-M 441 (630)
T ss_pred CCCCEEEEeCccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEechhHHHHHHHHHHHHHHHhCCCCCCcEEEEc-h
Confidence 4577777621 2345678899999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHhhhhHHHHHh
Q psy9123 92 ADISLAYSNILAEWNTKVEVQI 113 (118)
Q Consensus 92 A~~al~~~~~~~Ewl~~~~~~~ 113 (118)
+.+++++++.|+|||+++.++.
T Consensus 442 ~~~~t~i~~~~~e~l~~~~~~~ 463 (630)
T TIGR03675 442 IWEATAIHTAYPEYLNKELRER 463 (630)
T ss_pred HHHHHHHHHHhHHHhCHHHHHH
Confidence 9999999999999999986654
No 2
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=99.71 E-value=8.8e-18 Score=146.84 Aligned_cols=84 Identities=13% Similarity=0.162 Sum_probs=77.7
Q ss_pred cchhhHHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHHhhcCCCCCCCEEEeChhHHHHHHHHHHHHhhhhHHHH
Q psy9123 32 LNNITCDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSHLDNSSLTQIPMFFISPVADISLAYSNILAEWNTKVEV 111 (118)
Q Consensus 32 ~~~~~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l~~~~~Lp~iPIyldSPmA~~al~~~~~~~Ewl~~~~~ 111 (118)
-.++++++|.++|++|+++||+||||+|||||.||+|..|++..++|.+|.+|||+|. |-.++|++...||||++.+.+
T Consensus 389 ~R~eaE~~L~~vi~~t~~rGGKvLIP~fAVGR~QEvM~VLee~mr~g~ipe~PVYlDG-MI~EatAIhtaYPEyL~~~lr 467 (637)
T COG1782 389 PREEAEKELIKVINDTLKRGGKVLIPVFAVGRSQEVMIVLEEAMRKGLIPEVPVYLDG-MIWEATAIHTAYPEYLNKELR 467 (637)
T ss_pred cHHHHHHHHHHHHHHHHhcCCeEEEEeeeccccceehhHHHHHHhcCCCCCCceeeee-eeeehhhhhhcCHHhhhHHHH
Confidence 3567788999999999999999999999999999999999999999999999999995 999999999999999999988
Q ss_pred Hhhhh
Q psy9123 112 QILSK 116 (118)
Q Consensus 112 ~~L~~ 116 (118)
+.+-+
T Consensus 468 ~~I~~ 472 (637)
T COG1782 468 ERIFH 472 (637)
T ss_pred HHHhc
Confidence 76543
No 3
>KOG1138|consensus
Probab=99.67 E-value=7.7e-17 Score=140.88 Aligned_cols=92 Identities=47% Similarity=0.784 Sum_probs=84.8
Q ss_pred ceeEEEEccccchhh-------HHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHHhhcCCCCCCCEEEeChhHHH
Q psy9123 22 SKIAVLLHSDLNNIT-------CDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSHLDNSSLTQIPMFFISPVADI 94 (118)
Q Consensus 22 ~~~~~~~~~~~~~~~-------~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l~~~~~Lp~iPIyldSPmA~~ 94 (118)
---|||+.+++..-. .-|||..|+.|+++||+||+|++|+|.++||++++.+..++.++.+.||||+||+|..
T Consensus 257 k~~Dvli~T~lsql~tanpd~m~gelc~nvt~~~rn~GsvL~PcyPsGviydl~Ecls~~idna~ls~~P~yfISpvadS 336 (653)
T KOG1138|consen 257 KETDVLIYTGLSQLPTANPDEMGGELCKNVTLTGRNHGSVLLPCYPSGVIYDLIECLSQDIDNAGLSDTPIYFISPVADS 336 (653)
T ss_pred ccccEEEEecccccccCCccchhhhHHHHHHHHhhcCCceeeeccCCchhhHHHHHhhhcccccCCcCCcceEecccchh
Confidence 346999998875544 3499999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHh
Q psy9123 95 SLAYSNILAEWNTKVEVQI 113 (118)
Q Consensus 95 al~~~~~~~Ewl~~~~~~~ 113 (118)
++++.+++.||++..+|+.
T Consensus 337 sla~s~ilaEwls~akqnk 355 (653)
T KOG1138|consen 337 SLATSDILAEWLSLAKQNK 355 (653)
T ss_pred hhhHHHHHHHHHHhhhccc
Confidence 9999999999999999864
No 4
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=2.5e-14 Score=121.24 Aligned_cols=89 Identities=18% Similarity=0.240 Sum_probs=76.8
Q ss_pred eEEEEccc--------cchhhHHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHHhhcCCCCCCCEEEeChhHHHH
Q psy9123 24 IAVLLHSD--------LNNITCDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSHLDNSSLTQIPMFFISPVADIS 95 (118)
Q Consensus 24 ~~~~~~~~--------~~~~~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l~~~~~Lp~iPIyldSPmA~~a 95 (118)
+|||+.-- -..+..++|.+.|.+++.+||+||||+||+||+||||.+|+.++.++ ++|||+||++|..+
T Consensus 181 ~DvLI~EsTYg~~~~~~r~~~e~~f~~~v~~~l~~GG~vlipafa~graQEll~~L~~~~~~~---~~pi~~d~~~a~~~ 257 (427)
T COG1236 181 IDVLIVESTYGDRLHPNRDEVERRFIESVKAALERGGTVLIPAFALGRAQELLLILRELGFAG---DYPIYVDGPIARVA 257 (427)
T ss_pred CcEEEEecccCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEecccccHHHHHHHHHHHHhccC---CCCeEeccHHHHHH
Confidence 67776521 12334566999999999999999999999999999999999999988 79999999999999
Q ss_pred HHHHHHHHhhhhHHHHHhhh
Q psy9123 96 LAYSNILAEWNTKVEVQILS 115 (118)
Q Consensus 96 l~~~~~~~Ewl~~~~~~~L~ 115 (118)
+.+++.+.+|+++.......
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~ 277 (427)
T COG1236 258 LAYAKYPIGLDLPDLLKVAE 277 (427)
T ss_pred HHHHHhchhccChHHHHHHH
Confidence 99999999999888765544
No 5
>KOG1136|consensus
Probab=99.51 E-value=1.9e-14 Score=122.20 Aligned_cols=79 Identities=16% Similarity=0.324 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHHhhcCCCCCCCEEEeChhHHHHHHHHHHHHhhhhHHHHHhhh
Q psy9123 36 TCDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSHLDNSSLTQIPMFFISPVADISLAYSNILAEWNTKVEVQILS 115 (118)
Q Consensus 36 ~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l~~~~~Lp~iPIyldSPmA~~al~~~~~~~Ewl~~~~~~~L~ 115 (118)
.+.+|...+.+++.+||+||||+||.||+|||+.+|+.||++..+. +||||.|.++.++..|++.|..|.++..+..+-
T Consensus 217 rERdFLk~VhecVa~GGkvlIPvFALGRAQElCiLLd~YWERm~lk-~Piyfs~Glte~an~yyk~fiswtn~~v~k~~~ 295 (501)
T KOG1136|consen 217 RERDFLKKVHECVARGGKVLIPVFALGRAQELCILLDDYWERMNLK-VPIYFSSGLTEKANMYYKMFISWTNENVKKKFV 295 (501)
T ss_pred hHHHHHHHHHHHHhcCCeEEEEeeecchHHHHHHHHHHHHHhhccC-CCccccccccchhchHhhhhhhhcccchhhhhc
Confidence 4678999999999999999999999999999999999999999995 999999999999999999999999998776543
No 6
>KOG1135|consensus
Probab=99.44 E-value=3.7e-13 Score=120.59 Aligned_cols=83 Identities=22% Similarity=0.376 Sum_probs=76.9
Q ss_pred hhhHHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHHhhcC--CCCCCCEEEeChhHHHHHHHHHHHHhhhhHHHH
Q psy9123 34 NITCDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSHLDNS--SLTQIPMFFISPVADISLAYSNILAEWNTKVEV 111 (118)
Q Consensus 34 ~~~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l~~~~--~Lp~iPIyldSPmA~~al~~~~~~~Ewl~~~~~ 111 (118)
.+.-++|.+.|.+|++.||+||||++..||++||...|+++|.+. +++.+|+++.|+.+.++.+|++++.|||++..-
T Consensus 209 kkRDe~f~d~v~~~L~~~G~VlipVDtAgRvLELa~iLdqlws~~~~gl~~~pl~~Ls~vs~~tveyAKSmiEWmsdkl~ 288 (764)
T KOG1135|consen 209 KKRDEQFLDTVLKTLRSGGNVLIPVDTAGRVLELALILDQLWSQSDAGLSQYPLAFLSYVSSRTVEYAKSMIEWMSDKLS 288 (764)
T ss_pred hHHHHHHHHHHHHHhcCCCcEEEEecccHHHHHHHHHHHHHHhcccCCCcccceeeeeccchhHHHHHHHHHHHhhhHHH
Confidence 344578999999999999999999999999999999999999998 677899999999999999999999999999988
Q ss_pred Hhhhh
Q psy9123 112 QILSK 116 (118)
Q Consensus 112 ~~L~~ 116 (118)
..++.
T Consensus 289 k~fe~ 293 (764)
T KOG1135|consen 289 KMFEE 293 (764)
T ss_pred Hhhhh
Confidence 77765
No 7
>KOG1137|consensus
Probab=99.43 E-value=1.8e-13 Score=120.73 Aligned_cols=93 Identities=17% Similarity=0.187 Sum_probs=79.9
Q ss_pred CCceeEEEEc-cc-------cchhhHHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHHhhcCC-CCCCCEEEeCh
Q psy9123 20 GQSKIAVLLH-SD-------LNNITCDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSHLDNSS-LTQIPMFFISP 90 (118)
Q Consensus 20 ~~~~~~~~~~-~~-------~~~~~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l~~~~~-Lp~iPIyldSP 90 (118)
.+-++|||+. |+ -.++.+.+|..+|..++.+||.||||+||.||+||||..|++||.+.. +.++|||.-|+
T Consensus 196 P~~~~dvli~estygv~~h~~r~~re~rlt~vIh~~v~rGGR~L~PvFAlgrAqELllildeyw~~h~~l~~iPiyyaSs 275 (668)
T KOG1137|consen 196 PPTGPDVLITESTYGVQIHEPREEREGRLTWVIHSTVPRGGRVLIPVFALGRAQELLLILDEYWGNHVDLRDIPIYYASS 275 (668)
T ss_pred CCCCccEEEEEeeeeEEecCchHHhhhhhhhhHHhhccCCCceEeeeeecchHHHHHHHHHHHhhcchhhhcCceeehhh
Confidence 3456676642 21 245667789999999999999999999999999999999999999864 56899999999
Q ss_pred hHHHHHHHHHHHHhhhhHHHHH
Q psy9123 91 VADISLAYSNILAEWNTKVEVQ 112 (118)
Q Consensus 91 mA~~al~~~~~~~Ewl~~~~~~ 112 (118)
+|++...+|++|..-|++..+.
T Consensus 276 lakkcm~vfQtyv~~mnd~Irk 297 (668)
T KOG1137|consen 276 LAKKCMGVFQTYVNMMNDRIRK 297 (668)
T ss_pred HHHhhhhhHheehhhhhhhhHH
Confidence 9999999999999999998874
No 8
>PF10996 Beta-Casp: Beta-Casp domain; InterPro: IPR022712 The beta-CASP domain is found C-terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease. The active site of this enzyme is located at the interface of these two domains []. ; PDB: 2YCB_B 2XR1_B 2I7T_A 2I7V_A 2I7X_A 3A4Y_A 3IE2_D 3IE1_B 3IE0_D 2DKF_D ....
Probab=99.27 E-value=7.6e-12 Score=87.54 Aligned_cols=52 Identities=21% Similarity=0.380 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhhcCCCC-CCCEEEeChhHHHHHHHHHHHHhhhhHHHHHhhh
Q psy9123 64 IYDLFECLSSHLDNSSLT-QIPMFFISPVADISLAYSNILAEWNTKVEVQILS 115 (118)
Q Consensus 64 tqELL~~L~~l~~~~~Lp-~iPIyldSPmA~~al~~~~~~~Ewl~~~~~~~L~ 115 (118)
|||||++|+++|++++++ ++|||+|||||.+++++++.|.||+++..++.+.
T Consensus 1 ~qEll~~L~~~~~~~~~~~~~pI~~~s~~a~~~~~~~~~~~e~l~~~~~~~~~ 53 (126)
T PF10996_consen 1 AQELLLILDEYWKEGKLPRDVPIYVDSPMAAKVLEYYKSYPEWLSESIQRKFE 53 (126)
T ss_dssp HHHHHHHHHHHHCTTSSGTTSEEEEESTCHHHHHHHHHHCGGGS-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCCCCcEEEEChHHHHHHHHHHHHHHHHCHHHHHHHH
Confidence 799999999999999984 6999999999999999999999999999776554
No 9
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=97.15 E-value=0.0026 Score=53.37 Aligned_cols=78 Identities=10% Similarity=0.065 Sum_probs=57.7
Q ss_pred ceeEEEEccccc------hhhHHHHHHHHHHHH-hcCCeEEEcCCc--hHHHHHHHHHHHHHhhcCCCCCCCEEEeChhH
Q psy9123 22 SKIAVLLHSDLN------NITCDEKWMRDIKNQ-NESGSVLVPCYP--SGVIYDLFECLSSHLDNSSLTQIPMFFISPVA 92 (118)
Q Consensus 22 ~~~~~~~~~~~~------~~~~~eL~~~I~~Tl-~~GG~VLIPaFa--vGRtqELL~~L~~l~~~~~Lp~iPIyldSPmA 92 (118)
.+.|+|++-.-. ..+..++.+.+.+.+ +.+|.|+||+|+ ++|+|+++....++ .-||++++.+.
T Consensus 182 ~g~d~Li~EsT~~~~~~~~~~e~~~~~~i~~~~~~~~~~viv~~fa~~~~R~~~i~~~a~~~-------~r~v~v~g~~~ 254 (422)
T TIGR00649 182 KGVLLLISDSTNVENPGFTPSEAKVLEQLNDIFKNAKGRVIVATFASNIHRVQQLIQIARKQ-------GRKFAVYGRSM 254 (422)
T ss_pred cCeEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEccccHHHHHHHHHHHHHh-------CCEEEEECccH
Confidence 457887764321 124556677777776 679999999999 99999999987653 24699999999
Q ss_pred HHHHHHHHHHHhhhh
Q psy9123 93 DISLAYSNILAEWNT 107 (118)
Q Consensus 93 ~~al~~~~~~~Ewl~ 107 (118)
.++++++..+ .|+.
T Consensus 255 ~~~~~~~~~~-g~~~ 268 (422)
T TIGR00649 255 EHLFGIARRL-GLIK 268 (422)
T ss_pred HHHHHHHHHc-CCcc
Confidence 9998887765 4443
No 10
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=91.98 E-value=0.27 Score=37.84 Aligned_cols=58 Identities=14% Similarity=0.092 Sum_probs=44.5
Q ss_pred CceeEEEEccccch-------h------hHHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHHhhcC
Q psy9123 21 QSKIAVLLHSDLNN-------I------TCDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSHLDNS 78 (118)
Q Consensus 21 ~~~~~~~~~~~~~~-------~------~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l~~~~ 78 (118)
..+||+++..--+. + ..+++.+.+.+.++.||.++|=.|.-++++++++.+.+++.+-
T Consensus 115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~v 185 (209)
T PRK11188 115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKV 185 (209)
T ss_pred CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceEE
Confidence 46799988632110 1 1245677888899999999999999999999999998888764
No 11
>PF02522 Antibiotic_NAT: Aminoglycoside 3-N-acetyltransferase; InterPro: IPR003679 This family consists of bacterial aminoglycoside 3-N-acetyltransferases (2.3.1.81 from EC) that catalyse the reaction []: Acetyl-Co + a 2-deoxystreptamine antibiotic = CoA + N3'-acetyl-2-deoxystreptamine antibiotic The enzyme can use a range of antibiotics with 2-deoxystreptamine rings as acceptor for its acetyltransferase activity, this inactivates and confers resistance to gentamicin, kanamycin, tobramycin, neomycin and apramycin amongst others. For the kanamycin group antibiotics acetylation occurred at the 3"-amino group in arbekacin and amikacin, and at the 3-amino group in dibekacin as in the case of kanamycin reflecting the effect of the (S)-4-amino-2-hydroxybutyryl side chain which is present in arbekacin and amikacin, but absent in dibekacin and kanamycin [].; GO: 0046353 aminoglycoside 3-N-acetyltransferase activity, 0046677 response to antibiotic; PDB: 3SMA_D 3N0M_B 3IJW_B 3N0S_D 3SLB_C 3SLF_A 3KZL_D 3E4F_B 2NYG_E.
Probab=86.12 E-value=1.1 Score=35.23 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=25.3
Q ss_pred EEccccc-----hhhHHHHHHHHHHHHhcCCeEEEcCCchHH
Q psy9123 27 LLHSDLN-----NITCDEKWMRDIKNQNESGSVLVPCYPSGV 63 (118)
Q Consensus 27 ~~~~~~~-----~~~~~eL~~~I~~Tl~~GG~VLIPaFavGR 63 (118)
||||.+. +-.-+.+.+++.+++...|++++|+|+..-
T Consensus 1 lVHsSl~~lG~v~gg~~~vi~aL~~~vg~~GTlvmPt~t~~~ 42 (229)
T PF02522_consen 1 LVHSSLSSLGYVEGGAETVIDALLEVVGPEGTLVMPTFTYSN 42 (229)
T ss_dssp EEEE-TGGG-CBTTHHHHHHHHHHHHHTTTSEEEEE---CCC
T ss_pred CeeechHHhCCCCCcHHHHHHHHHHHhccCCeEEEEccCCcc
Confidence 4566653 234568899999999999999999998753
No 12
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=85.50 E-value=6.2 Score=28.94 Aligned_cols=57 Identities=21% Similarity=0.067 Sum_probs=45.7
Q ss_pred cchhhHHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHHhhcCCCC----------CCCEEEe
Q psy9123 32 LNNITCDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSHLDNSSLT----------QIPMFFI 88 (118)
Q Consensus 32 ~~~~~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l~~~~~Lp----------~iPIyld 88 (118)
..++...-+|..+.+++++|-.|+|=+-.-+++++|=..|+++-..+=+| ..||.+-
T Consensus 10 ~~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~~~~~~PV~l~ 76 (142)
T PRK05728 10 TLSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTFRDESFLPHGLAGEGPAAGQPVLLT 76 (142)
T ss_pred CchhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCCCCCcCCCCCcCCCCCCCCCCEEEE
Confidence 35556777999999999999999999988899999999998765554343 3588875
No 13
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=85.08 E-value=3.2 Score=31.47 Aligned_cols=54 Identities=19% Similarity=0.119 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHHhhcCCCC----------CCCEEEeCh
Q psy9123 37 CDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSHLDNSSLT----------QIPMFFISP 90 (118)
Q Consensus 37 ~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l~~~~~Lp----------~iPIyldSP 90 (118)
.+-+|..+.+++++|.+|+|=|-.-+|.++|=..|+++-.+.=|| .-||++.-+
T Consensus 15 ~~~~c~L~~k~~~~G~rvlI~~~d~~q~e~LD~~LWt~~~~sFiPH~~~~e~~~~~qPIli~~~ 78 (144)
T COG2927 15 LAAACRLAEKAWRSGWRVLIQCEDEAQAEALDEHLWTFSAESFIPHNLAGEPPPAGQPILIAWP 78 (144)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhhhccchhcccCCccCCCCCCCCCCEEEEcC
Confidence 348899999999999999999999999999999998876554332 467776543
No 14
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=84.67 E-value=2.9 Score=30.95 Aligned_cols=57 Identities=11% Similarity=0.186 Sum_probs=40.9
Q ss_pred CceeEEEEccc---------cch----hhHHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHHhhc
Q psy9123 21 QSKIAVLLHSD---------LNN----ITCDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSHLDN 77 (118)
Q Consensus 21 ~~~~~~~~~~~---------~~~----~~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l~~~ 77 (118)
+.+||+++..- +.. ...+++.+.+.+.++.||.++|=.+...++-+++..+.+.+..
T Consensus 96 ~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~~~~ 165 (188)
T TIGR00438 96 DDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKLFEK 165 (188)
T ss_pred CCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhhhce
Confidence 45799988521 110 1135677778889999999999778888888888888776643
No 15
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=84.42 E-value=2.8 Score=33.65 Aligned_cols=52 Identities=8% Similarity=0.062 Sum_probs=40.9
Q ss_pred ceeEEEEccccchhhHHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHH
Q psy9123 22 SKIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSH 74 (118)
Q Consensus 22 ~~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l 74 (118)
.+||++++ +...+...++...+.+.++.||.+++--+-.....++...+.+.
T Consensus 224 ~~fDlVva-n~~~~~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~ 275 (288)
T TIGR00406 224 GKADVIVA-NILAEVIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG 275 (288)
T ss_pred CCceEEEE-ecCHHHHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc
Confidence 47998876 44455667788888999999999999888777787877777654
No 16
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=84.33 E-value=1.4 Score=35.00 Aligned_cols=58 Identities=19% Similarity=0.299 Sum_probs=43.5
Q ss_pred CCceeEEEEccccchhh--------------HHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHHhhcC
Q psy9123 20 GQSKIAVLLHSDLNNIT--------------CDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSHLDNS 78 (118)
Q Consensus 20 ~~~~~~~~~~~~~~~~~--------------~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l~~~~ 78 (118)
|..++|| |.||..+++ ++..++...+.++.||+.+++.|--|-..++++.+.++++.-
T Consensus 108 ~~~~~Dv-V~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F~~v 179 (205)
T COG0293 108 GGAPVDV-VLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLFRKV 179 (205)
T ss_pred CCCCcce-EEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhhcee
Confidence 4455665 456666632 233445555668999999999999999999999999998763
No 17
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=82.98 E-value=3.2 Score=31.14 Aligned_cols=51 Identities=8% Similarity=0.113 Sum_probs=38.4
Q ss_pred ceeEEEEccccchhhHHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHH
Q psy9123 22 SKIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSS 73 (118)
Q Consensus 22 ~~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~ 73 (118)
.+||.++..- ......++.+.+.+.++.||.+++-....+++.+++..|.+
T Consensus 110 ~~~D~V~~~~-~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 160 (198)
T PRK00377 110 EKFDRIFIGG-GSEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALEN 160 (198)
T ss_pred CCCCEEEECC-CcccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHH
Confidence 4788877622 22334566777778899999999988888998999888865
No 18
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=82.70 E-value=1.5 Score=32.69 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=29.3
Q ss_pred ceeEEEEcccc--chhhHHHHHHHHHHHHhcCCeEEEcC
Q psy9123 22 SKIAVLLHSDL--NNITCDEKWMRDIKNQNESGSVLVPC 58 (118)
Q Consensus 22 ~~~~~~~~~~~--~~~~~~eL~~~I~~Tl~~GG~VLIPa 58 (118)
.+|||+++||. .++..+.|.+++.+.++.+|.+++-.
T Consensus 118 ~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 118 HSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred ccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 58999999997 46678899999999999999977644
No 19
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=82.20 E-value=2.4 Score=27.90 Aligned_cols=39 Identities=10% Similarity=0.033 Sum_probs=30.1
Q ss_pred cCCCceeEEEEccc-----cch-hhHHHHHHHHHHHHhcCCeEEE
Q psy9123 18 SNGQSKIAVLLHSD-----LNN-ITCDEKWMRDIKNQNESGSVLV 56 (118)
Q Consensus 18 ~~~~~~~~~~~~~~-----~~~-~~~~eL~~~I~~Tl~~GG~VLI 56 (118)
.....+||+.+... +.. +..+++.+.+.+.++.||.++|
T Consensus 65 ~~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi 109 (112)
T PF12847_consen 65 PDFLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVI 109 (112)
T ss_dssp TTTSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEE
Confidence 44556799998888 333 3456778888999999999987
No 20
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=81.27 E-value=2.3 Score=31.13 Aligned_cols=58 Identities=16% Similarity=0.235 Sum_probs=39.1
Q ss_pred CCceeEEEEcccc-----------chhhHHHHHHH---HHHHHhcCCeEEEcCCchHHHHHHHHHHHHHhhcC
Q psy9123 20 GQSKIAVLLHSDL-----------NNITCDEKWMR---DIKNQNESGSVLVPCYPSGVIYDLFECLSSHLDNS 78 (118)
Q Consensus 20 ~~~~~~~~~~~~~-----------~~~~~~eL~~~---I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l~~~~ 78 (118)
++.++|+++ +|. .....+..... ..+.++.||+.++-.|-.....++++.+.++++.-
T Consensus 88 ~~~~~dlv~-~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v 159 (181)
T PF01728_consen 88 SGEKFDLVL-SDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKV 159 (181)
T ss_dssp TTCSESEEE-E-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHE
T ss_pred cccCcceec-cccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEE
Confidence 447899755 566 33333332222 23447999999999999777679999999998874
No 21
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=81.09 E-value=1.9 Score=26.97 Aligned_cols=36 Identities=6% Similarity=0.129 Sum_probs=28.1
Q ss_pred CceeEEEEccccch--hhHHHHHHHHHHHHhcCCeEEE
Q psy9123 21 QSKIAVLLHSDLNN--ITCDEKWMRDIKNQNESGSVLV 56 (118)
Q Consensus 21 ~~~~~~~~~~~~~~--~~~~eL~~~I~~Tl~~GG~VLI 56 (118)
...||+.+...... +..+++.+-+.++++.||.++|
T Consensus 58 ~~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 58 DNSFDVVFSNSVLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp TT-EEEEEEESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccccccccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 45799888877665 3566788889999999999986
No 22
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=80.70 E-value=4.5 Score=31.63 Aligned_cols=50 Identities=10% Similarity=0.039 Sum_probs=37.9
Q ss_pred eeEEEEccccchhhHHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHH
Q psy9123 23 KIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSS 73 (118)
Q Consensus 23 ~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~ 73 (118)
+||++++ +...+....+...+.+.++.||.+++--+......++...+.+
T Consensus 179 ~fD~Vva-ni~~~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~ 228 (250)
T PRK00517 179 KADVIVA-NILANPLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEE 228 (250)
T ss_pred CcCEEEE-cCcHHHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHH
Confidence 7998765 4555666778888889999999999977766777777666654
No 23
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=79.80 E-value=2.9 Score=27.64 Aligned_cols=36 Identities=6% Similarity=0.008 Sum_probs=28.4
Q ss_pred ceeEEEEccccchhhHHHHHHHHHHHHhcCCeEEEcC
Q psy9123 22 SKIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLVPC 58 (118)
Q Consensus 22 ~~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLIPa 58 (118)
.+||+++..- .....+++.+.+.+.++.||.+++..
T Consensus 87 ~~~D~v~~~~-~~~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 87 PEPDRVFIGG-SGGLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred CCCCEEEECC-cchhHHHHHHHHHHHcCCCCEEEEEe
Confidence 4899988754 33445788999999999999999865
No 24
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=79.32 E-value=5.9 Score=30.41 Aligned_cols=51 Identities=8% Similarity=0.016 Sum_probs=36.7
Q ss_pred CceeEEEEccccch--hhHHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHH
Q psy9123 21 QSKIAVLLHSDLNN--ITCDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECL 71 (118)
Q Consensus 21 ~~~~~~~~~~~~~~--~~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L 71 (118)
..+||+++.+.... ....++...+.+.++.||.+++.+|.-+...|+-..+
T Consensus 101 ~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~ 153 (251)
T PRK10258 101 TATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAW 153 (251)
T ss_pred CCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHH
Confidence 34799988654332 2345667778889999999999998887776665443
No 25
>PF07090 DUF1355: Protein of unknown function (DUF1355); InterPro: IPR010768 This entry is found in several hypothetical bacterial proteins of around 250 residues in length. The function of these proteins is unknown.; PDB: 2GK3_D 3SOZ_C 3RHT_D.
Probab=78.70 E-value=3.1 Score=32.12 Aligned_cols=38 Identities=13% Similarity=0.141 Sum_probs=28.7
Q ss_pred CCceeEEEEccccchhhH------HHHHHHHHHHHhcCCeEEEc
Q psy9123 20 GQSKIAVLLHSDLNNITC------DEKWMRDIKNQNESGSVLVP 57 (118)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~------~eL~~~I~~Tl~~GG~VLIP 57 (118)
.=.+||+++-+|...++. ..-++.|.+.++.||-+++=
T Consensus 64 ~L~~yD~vIl~dv~~~~ll~~~~~~~~~~~l~~yV~~GGgLlmi 107 (177)
T PF07090_consen 64 ELNRYDVVILSDVPANSLLKSRRSPNQLELLADYVRDGGGLLMI 107 (177)
T ss_dssp HHCT-SEEEEES--HHHHHT----HHHHHHHHHHHHTT-EEEEE
T ss_pred HHhcCCEEEEeCCCchhcccccCCHHHHHHHHHHHHhCCEEEEE
Confidence 457899999999999988 56788999999889988874
No 26
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=77.58 E-value=5.6 Score=29.30 Aligned_cols=51 Identities=6% Similarity=0.012 Sum_probs=38.8
Q ss_pred ceeEEEEccccchhhHHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHH
Q psy9123 22 SKIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSS 73 (118)
Q Consensus 22 ~~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~ 73 (118)
.+||+++..... ....++.+.+.+.++.||.+++-....+...++...+.+
T Consensus 96 ~~~D~v~~~~~~-~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~ 146 (187)
T PRK08287 96 GKADAIFIGGSG-GNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEK 146 (187)
T ss_pred cCCCEEEECCCc-cCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHH
Confidence 468988865433 335667788888999999999977777888888877765
No 27
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=76.63 E-value=7.3 Score=23.52 Aligned_cols=37 Identities=5% Similarity=0.011 Sum_probs=27.7
Q ss_pred CCceeEEEEccccc---hhhHHHHHHHHHHHHhcCCeEEE
Q psy9123 20 GQSKIAVLLHSDLN---NITCDEKWMRDIKNQNESGSVLV 56 (118)
Q Consensus 20 ~~~~~~~~~~~~~~---~~~~~eL~~~I~~Tl~~GG~VLI 56 (118)
...++|+++..... ......+.+.+.+.++.||.+++
T Consensus 63 ~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~ 102 (107)
T cd02440 63 ADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVL 102 (107)
T ss_pred cCCceEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEE
Confidence 34679988887665 34667777888888899998875
No 28
>PRK00811 spermidine synthase; Provisional
Probab=75.55 E-value=7.3 Score=31.35 Aligned_cols=58 Identities=17% Similarity=0.237 Sum_probs=41.5
Q ss_pred CceeEEEEccccchh-------hHHHHHHHHHHHHhcCCeEEE----cCCchHHHHHHHHHHHHHhhcCC
Q psy9123 21 QSKIAVLLHSDLNNI-------TCDEKWMRDIKNQNESGSVLV----PCYPSGVIYDLFECLSSHLDNSS 79 (118)
Q Consensus 21 ~~~~~~~~~~~~~~~-------~~~eL~~~I~~Tl~~GG~VLI----PaFavGRtqELL~~L~~l~~~~~ 79 (118)
..+|||+++ |+... ..+++.+.+.+.++.||.+++ |.+.......+...|.+.+..-.
T Consensus 148 ~~~yDvIi~-D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~~v~ 216 (283)
T PRK00811 148 ENSFDVIIV-DSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFPIVR 216 (283)
T ss_pred CCcccEEEE-CCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHCCCEE
Confidence 458999986 44211 136788889999999999998 55555667777777777765543
No 29
>KOG3201|consensus
Probab=75.32 E-value=4.6 Score=32.12 Aligned_cols=57 Identities=18% Similarity=0.073 Sum_probs=46.0
Q ss_pred HHHhhcccCCCceeEEEEcccc--chhhHHHHHHHHHHHHhcCCeEEEcCCchHHHHHH
Q psy9123 11 LIASTASSNGQSKIAVLLHSDL--NNITCDEKWMRDIKNQNESGSVLVPCYPSGVIYDL 67 (118)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqEL 67 (118)
++-+.-|+.-|-+||.+++||- ..+-.+.|.+.|..-++..|+-|+=+---|++++-
T Consensus 91 ~~~~aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~k 149 (201)
T KOG3201|consen 91 LIWGAQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQK 149 (201)
T ss_pred HHhhhHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCcccchHHH
Confidence 4455566677889999999995 56677889999999999999999988777776553
No 30
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=74.87 E-value=5.9 Score=29.69 Aligned_cols=38 Identities=11% Similarity=0.052 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHHh
Q psy9123 38 DEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSHL 75 (118)
Q Consensus 38 ~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l~ 75 (118)
+++.+.+.+.++.||.+.+=++......+++..+.++.
T Consensus 112 ~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~ 149 (194)
T TIGR00091 112 PHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSEND 149 (194)
T ss_pred HHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCC
Confidence 57889999999999999999999999999998887753
No 31
>PRK04266 fibrillarin; Provisional
Probab=74.15 E-value=4.6 Score=31.74 Aligned_cols=35 Identities=11% Similarity=0.077 Sum_probs=25.1
Q ss_pred ceeEEEEccccchhhHHHHHHHHHHHHhcCCeEEE
Q psy9123 22 SKIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLV 56 (118)
Q Consensus 22 ~~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLI 56 (118)
.+||++++.--..+....+.+.+.+.++.||.++|
T Consensus 140 ~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 140 EKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred ccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEE
Confidence 46999986322223334567788889999999988
No 32
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=74.07 E-value=8.2 Score=30.59 Aligned_cols=57 Identities=19% Similarity=0.188 Sum_probs=39.0
Q ss_pred CceeEEEEccccc---h---h-hHHHHHHHHHHHHhcCCeEEE----cCCchHHHHHHHHHHHHHhhcC
Q psy9123 21 QSKIAVLLHSDLN---N---I-TCDEKWMRDIKNQNESGSVLV----PCYPSGVIYDLFECLSSHLDNS 78 (118)
Q Consensus 21 ~~~~~~~~~~~~~---~---~-~~~eL~~~I~~Tl~~GG~VLI----PaFavGRtqELL~~L~~l~~~~ 78 (118)
..+|||++. |.. . . ...++.+.+.+.++.||.+++ |.+......++...+.+.+..-
T Consensus 143 ~~~yDvIi~-D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~~v 210 (270)
T TIGR00417 143 ENTFDVIIV-DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFPIT 210 (270)
T ss_pred CCCccEEEE-eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCCCe
Confidence 358999876 332 1 1 146778889999999999998 5555555666666677665543
No 33
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=73.08 E-value=7.4 Score=28.46 Aligned_cols=37 Identities=19% Similarity=0.004 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHH
Q psy9123 37 CDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSS 73 (118)
Q Consensus 37 ~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~ 73 (118)
.+++.+.+.+.++.||.+++-........+++..|.+
T Consensus 119 ~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~ 155 (179)
T TIGR00537 119 IDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDE 155 (179)
T ss_pred HHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHh
Confidence 4677888889999999998876555446677766654
No 34
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=72.61 E-value=10 Score=28.55 Aligned_cols=55 Identities=7% Similarity=-0.057 Sum_probs=39.7
Q ss_pred CceeEEEEccccchhhHHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHHhhcC
Q psy9123 21 QSKIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSHLDNS 78 (118)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l~~~~ 78 (118)
..+||+++. +.. .....+.+.+.+.++.||.+++- +...+..++....+++...|
T Consensus 107 ~~~fD~I~s-~~~-~~~~~~~~~~~~~LkpgG~lvi~-~~~~~~~~~~~~~e~~~~~~ 161 (181)
T TIGR00138 107 EEQFDVITS-RAL-ASLNVLLELTLNLLKVGGYFLAY-KGKKYLDEIEEAKRKCQVLG 161 (181)
T ss_pred cCCccEEEe-hhh-hCHHHHHHHHHHhcCCCCEEEEE-cCCCcHHHHHHHHHhhhhcC
Confidence 458997665 332 23456777888899999998876 56777888888887766555
No 35
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=70.74 E-value=10 Score=27.63 Aligned_cols=55 Identities=20% Similarity=0.060 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHHhhcCCCC----------CCCEEEeChh
Q psy9123 37 CDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSHLDNSSLT----------QIPMFFISPV 91 (118)
Q Consensus 37 ~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l~~~~~Lp----------~iPIyldSPm 91 (118)
.+-+|+.+.+++++|..|+|=+-.-+.+++|=..|+++-..+=|| .-||.+-...
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~~~~~~PV~i~~~~ 79 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGLAGEPPAARQPVLITWDQ 79 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEETT-SSTT--SEEEE-TT
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcccCCCCCCCCeEEEecCc
Confidence 577899999999999999999999999999999988765444332 2488887755
No 36
>PRK10664 transcriptional regulator HU subunit beta; Provisional
Probab=70.74 E-value=7.1 Score=26.63 Aligned_cols=44 Identities=18% Similarity=0.119 Sum_probs=32.5
Q ss_pred HHHHhhcccCCCceeEEEEccccchhhHHHHHHHHHHHHhcCCeEEEcCCc
Q psy9123 10 SLIASTASSNGQSKIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLVPCYP 60 (118)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLIPaFa 60 (118)
.||..-|...|-+|- ..+..++.+.+.|.+++.+||.|-||-|=
T Consensus 5 eli~~ia~~~~~s~~-------~~~~~v~~~~~~i~~~L~~~~~v~l~gfG 48 (90)
T PRK10664 5 QLIDKIAAGADISKA-------AAGRALDAIIASVTESLKEGDDVALVGFG 48 (90)
T ss_pred HHHHHHHHHhCCCHH-------HHHHHHHHHHHHHHHHHhCCCEEEECCcE
Confidence 345555555555543 34667889999999999999999999873
No 37
>PRK10753 transcriptional regulator HU subunit alpha; Provisional
Probab=69.66 E-value=6 Score=26.89 Aligned_cols=44 Identities=16% Similarity=0.126 Sum_probs=32.3
Q ss_pred HHHHhhcccCCCceeEEEEccccchhhHHHHHHHHHHHHhcCCeEEEcCCc
Q psy9123 10 SLIASTASSNGQSKIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLVPCYP 60 (118)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLIPaFa 60 (118)
.||..-|...|-||-| .+..++.+.+.|.+++.+|+.|-||-|=
T Consensus 5 eli~~ia~~~~~s~~~-------~~~~v~~~~~~i~~~L~~g~~V~i~gfG 48 (90)
T PRK10753 5 QLIDVIADKAELSKTQ-------AKAALESTLAAITESLKEGDAVQLVGFG 48 (90)
T ss_pred HHHHHHHHHhCCCHHH-------HHHHHHHHHHHHHHHHHcCCeEEEcCCE
Confidence 3455555555555543 3566889999999999999999999773
No 38
>PRK03612 spermidine synthase; Provisional
Probab=69.37 E-value=10 Score=33.24 Aligned_cols=52 Identities=17% Similarity=0.266 Sum_probs=40.4
Q ss_pred ceeEEEEccccchh--------hHHHHHHHHHHHHhcCCeEEE----cCCchHHHHHHHHHHHHH
Q psy9123 22 SKIAVLLHSDLNNI--------TCDEKWMRDIKNQNESGSVLV----PCYPSGVIYDLFECLSSH 74 (118)
Q Consensus 22 ~~~~~~~~~~~~~~--------~~~eL~~~I~~Tl~~GG~VLI----PaFavGRtqELL~~L~~l 74 (118)
.+|||+++ |.... ..+|+.+.+.+.++.||.+++ |.+...+..++...+.+.
T Consensus 372 ~~fDvIi~-D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~ 435 (521)
T PRK03612 372 EKFDVIIV-DLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAA 435 (521)
T ss_pred CCCCEEEE-eCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHc
Confidence 48999987 44321 124788899999999999999 888888888888888776
No 39
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=68.80 E-value=13 Score=29.22 Aligned_cols=51 Identities=8% Similarity=0.038 Sum_probs=43.6
Q ss_pred ceeEEEEccccchhhHHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHH
Q psy9123 22 SKIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSH 74 (118)
Q Consensus 22 ~~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l 74 (118)
++||.....-- ...+++.++..+.++.||.+++=+-..+-...++..+.++
T Consensus 101 ~~~daiFIGGg--~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~ 151 (187)
T COG2242 101 PSPDAIFIGGG--GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQL 151 (187)
T ss_pred CCCCEEEECCC--CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHc
Confidence 36777776665 6788999999999999999999999999888888888775
No 40
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=68.22 E-value=7.4 Score=27.81 Aligned_cols=35 Identities=14% Similarity=0.146 Sum_probs=28.8
Q ss_pred CceeEEEEccccchhhHHHHHHHHHHHHhcCCeEEE
Q psy9123 21 QSKIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLV 56 (118)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLI 56 (118)
-++++|+++.++.--+ ++.++.+.+-+++||.++.
T Consensus 51 l~~y~~vi~P~~~~~~-~~~~~~l~~~v~~GG~li~ 85 (154)
T cd03143 51 LSGYKLVVLPDLYLLS-DATAAALRAYVENGGTLVA 85 (154)
T ss_pred cccCCEEEECchhcCC-HHHHHHHHHHHHCCCEEEE
Confidence 4589999999887665 5778899999999997776
No 41
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=67.88 E-value=14 Score=28.02 Aligned_cols=37 Identities=16% Similarity=0.073 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHH
Q psy9123 37 CDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSS 73 (118)
Q Consensus 37 ~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~ 73 (118)
.+.+.+.+.+.++.||.++|=+..-+.+.++++.+..
T Consensus 135 ~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~ 171 (202)
T PRK00121 135 QPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSA 171 (202)
T ss_pred CHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 4678888999999999999998888888888888865
No 42
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=66.74 E-value=15 Score=30.39 Aligned_cols=89 Identities=8% Similarity=0.091 Sum_probs=52.9
Q ss_pred ceeEEEEccccch--hhHHHHHHHHHHHHhcCCeEEEcCC-----------chHHHHHH--------HHHHHHHhhcCCC
Q psy9123 22 SKIAVLLHSDLNN--ITCDEKWMRDIKNQNESGSVLVPCY-----------PSGVIYDL--------FECLSSHLDNSSL 80 (118)
Q Consensus 22 ~~~~~~~~~~~~~--~~~~eL~~~I~~Tl~~GG~VLIPaF-----------avGRtqEL--------L~~L~~l~~~~~L 80 (118)
.+||+++...... ....+....+.+.++.||.++|-++ +.+|-..+ ...|...+++.+.
T Consensus 187 ~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF 266 (314)
T TIGR00452 187 YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGF 266 (314)
T ss_pred CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCC
Confidence 3799988765332 1234567788999999999997543 23442211 2344566677777
Q ss_pred CCCCEEEeChhHHHHHHHHHHHHhhhh-HHHHHhh
Q psy9123 81 TQIPMFFISPVADISLAYSNILAEWNT-KVEVQIL 114 (118)
Q Consensus 81 p~iPIyldSPmA~~al~~~~~~~Ewl~-~~~~~~L 114 (118)
..+-+.-.+++... -+.--+||. ++-..+|
T Consensus 267 ~~V~i~~~~~tt~~----eqr~t~w~~~~sl~~~l 297 (314)
T TIGR00452 267 ENFRILDVLKTTPE----EQRKTDWILGESLEDFL 297 (314)
T ss_pred eEEEEEeccCCCHH----HhhhhhhhhccchHhhc
Confidence 66666666665433 344557766 3333444
No 43
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=66.28 E-value=8.6 Score=28.92 Aligned_cols=34 Identities=12% Similarity=0.078 Sum_probs=26.5
Q ss_pred eeEEEEcccc----chhhHHHHHHHHHHHHhcCCeEEE
Q psy9123 23 KIAVLLHSDL----NNITCDEKWMRDIKNQNESGSVLV 56 (118)
Q Consensus 23 ~~~~~~~~~~----~~~~~~eL~~~I~~Tl~~GG~VLI 56 (118)
+||+++.+.. ..+...++.+.+.+.++.||.+++
T Consensus 95 ~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 95 EYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred CcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 5998886644 334567889999999999999655
No 44
>PRK00199 ihfB integration host factor subunit beta; Reviewed
Probab=63.94 E-value=12 Score=25.20 Aligned_cols=26 Identities=4% Similarity=-0.020 Sum_probs=23.2
Q ss_pred hhhHHHHHHHHHHHHhcCCeEEEcCC
Q psy9123 34 NITCDEKWMRDIKNQNESGSVLVPCY 59 (118)
Q Consensus 34 ~~~~~eL~~~I~~Tl~~GG~VLIPaF 59 (118)
...++.+.+.|.+++.+|++|-||=|
T Consensus 23 ~~vv~~~~~~i~~~L~~g~~V~l~gf 48 (94)
T PRK00199 23 ENAVKEILEEMSDALARGDRIEIRGF 48 (94)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEcCC
Confidence 56678999999999999999999976
No 45
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=63.90 E-value=16 Score=26.06 Aligned_cols=56 Identities=23% Similarity=0.186 Sum_probs=32.4
Q ss_pred CCCCchhHHHHhhccc-CCCceeEEEEccccchhhHHHHHHHHHHHHhcCCeEEEcCC
Q psy9123 3 QNGDNLDSLIASTASS-NGQSKIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLVPCY 59 (118)
Q Consensus 3 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLIPaF 59 (118)
|.|.+|..=++..... ..+...-|++.+|.+.-+.+.|.++.+ .++++..||-|+-
T Consensus 40 Q~g~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~~~l~~A~~-~L~~~d~VlgPa~ 96 (122)
T PF09837_consen 40 QQGGDLGERMANAFQQAARGYEPVVLIGSDCPDLTPDDLEQAFE-ALQRHDVVLGPAE 96 (122)
T ss_dssp --SSSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--HHHHHHHHH-HTTT-SEEEEEBT
T ss_pred cCCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHH-HhccCCEEEeecc
Confidence 6677776544322111 344558899999999999777765554 6788889999985
No 46
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=63.50 E-value=35 Score=24.79 Aligned_cols=42 Identities=2% Similarity=-0.098 Sum_probs=29.5
Q ss_pred CceeEEEEccccch--hhHHHHHHHHHHHHhcCCeEEEcCCchH
Q psy9123 21 QSKIAVLLHSDLNN--ITCDEKWMRDIKNQNESGSVLVPCYPSG 62 (118)
Q Consensus 21 ~~~~~~~~~~~~~~--~~~~eL~~~I~~Tl~~GG~VLIPaFavG 62 (118)
...||+++.+.-.. ....+..+-+.+.++.||.++|=-|...
T Consensus 42 ~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~ 85 (160)
T PLN02232 42 DCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSILDFNKS 85 (160)
T ss_pred CCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEEECCCC
Confidence 34699887765322 2245667788899999999987666544
No 47
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=60.98 E-value=13 Score=27.86 Aligned_cols=35 Identities=9% Similarity=0.048 Sum_probs=26.2
Q ss_pred ceeEEEEcccc----chhhHHHHHHHHHHHHhcCCeEEE
Q psy9123 22 SKIAVLLHSDL----NNITCDEKWMRDIKNQNESGSVLV 56 (118)
Q Consensus 22 ~~~~~~~~~~~----~~~~~~eL~~~I~~Tl~~GG~VLI 56 (118)
.+||+++.+.. ..+...++.+.+.+.++.||.++|
T Consensus 93 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 93 EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 36998876643 334567888999999999999554
No 48
>PLN02366 spermidine synthase
Probab=60.77 E-value=26 Score=28.96 Aligned_cols=54 Identities=11% Similarity=0.075 Sum_probs=41.2
Q ss_pred CceeEEEEccccchh-------hHHHHHHHHHHHHhcCCeEEE----cCCchHHHHHHHHHHHHHh
Q psy9123 21 QSKIAVLLHSDLNNI-------TCDEKWMRDIKNQNESGSVLV----PCYPSGVIYDLFECLSSHL 75 (118)
Q Consensus 21 ~~~~~~~~~~~~~~~-------~~~eL~~~I~~Tl~~GG~VLI----PaFavGRtqELL~~L~~l~ 75 (118)
+.+|||++. |.... ...++.+.+.+.++.||.+++ |-+.......++..|.+.+
T Consensus 163 ~~~yDvIi~-D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F 227 (308)
T PLN02366 163 EGTYDAIIV-DSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETF 227 (308)
T ss_pred CCCCCEEEE-cCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHC
Confidence 457999986 54331 246788899999999999988 7776666777888888777
No 49
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=59.61 E-value=36 Score=25.58 Aligned_cols=57 Identities=7% Similarity=-0.043 Sum_probs=44.8
Q ss_pred cchhhHHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHHhhcCCCC----------CCCEEEe
Q psy9123 32 LNNITCDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSHLDNSSLT----------QIPMFFI 88 (118)
Q Consensus 32 ~~~~~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l~~~~~Lp----------~iPIyld 88 (118)
..+....-+|+.+.+++++|..|+|=+-.-.|++.|=..|+++-..+=|| .-||++.
T Consensus 10 ~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~LWtf~~~SFlPH~~~~~~~~a~~PV~L~ 76 (154)
T PRK06646 10 SDELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNLWTYSRKQFIPHGSKLDPQPEKQPIYIT 76 (154)
T ss_pred CCChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCEEEe
Confidence 44555677999999999999999999977789999999988765554343 3478874
No 50
>TIGR00988 hip integration host factor, beta subunit. This protein forms a site-specific DNA-binding heterodimer with the homologous integration host factor alpha subunit. It is closely related to the DNA-binding protein HU.
Probab=59.09 E-value=17 Score=24.40 Aligned_cols=27 Identities=0% Similarity=-0.070 Sum_probs=23.5
Q ss_pred chhhHHHHHHHHHHHHhcCCeEEEcCC
Q psy9123 33 NNITCDEKWMRDIKNQNESGSVLVPCY 59 (118)
Q Consensus 33 ~~~~~~eL~~~I~~Tl~~GG~VLIPaF 59 (118)
....++.+.+.|.+.+.+|++|-||=|
T Consensus 22 v~~vv~~~~~~i~~~L~~g~~V~l~gf 48 (94)
T TIGR00988 22 VEDAVKTMLEHMASALAQGDRIEIRGF 48 (94)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEcCc
Confidence 356678999999999999999999976
No 51
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=58.54 E-value=9.9 Score=30.76 Aligned_cols=47 Identities=17% Similarity=0.140 Sum_probs=38.1
Q ss_pred HHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHHhhcCCCCCCCEEEe
Q psy9123 41 WMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSHLDNSSLTQIPMFFI 88 (118)
Q Consensus 41 ~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l~~~~~Lp~iPIyld 88 (118)
.+.|.+.+-+.|.|||-=-+-+|+..||..=.+-.+ .-++++|||.+
T Consensus 113 qD~V~R~vGrpGVvLVgEG~~~Rv~~Ll~~E~krv~-RV~~~vPV~~i 159 (224)
T PF13829_consen 113 QDAVHRVVGRPGVVLVGEGPPSRVKKLLAQEKKRVA-RVVGNVPVHDI 159 (224)
T ss_pred cceEEEecCCCcEEEEecCCHHHHHHHHHHHHHHhc-cccCCCCeEEE
Confidence 358899999999999999999999999886554443 23578999875
No 52
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=57.62 E-value=48 Score=26.74 Aligned_cols=80 Identities=9% Similarity=0.023 Sum_probs=50.5
Q ss_pred chhHHHHhhcccCCCcee---EEEEccccchhhHHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHH---------
Q psy9123 7 NLDSLIASTASSNGQSKI---AVLLHSDLNNITCDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSH--------- 74 (118)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l--------- 74 (118)
.+|.+++.-+....+.+. =|.+--..+ .+.|.+.+.++-+-||.++|==|.-|=.-+-...+.++
T Consensus 72 ~lD~l~~~q~~a~~~~~~~g~~vFVSfSMP---~~sLk~Ll~qa~~~G~p~VlRG~~~nsfk~Ta~~v~~L~~~~~~~gv 148 (212)
T PRK13730 72 FLDELVRKQQASQDGKPRQGALYFVSFSIP---EEGLKRMLGETRHYGIPATLRGMVNNDLKTTAEAVLSLVKDGATDGV 148 (212)
T ss_pred HHHHHHHHHHHhhccCCCCceEEEEEcCCC---HHHHHHHHHHHHHhCCcEEEeCCCCCCHHHHHHHHHHHhccCCCCce
Confidence 588888876654444333 333333444 45566778899999999999877766544444444444
Q ss_pred ------hhcCCCCCCCEEEeC
Q psy9123 75 ------LDNSSLTQIPMFFIS 89 (118)
Q Consensus 75 ------~~~~~Lp~iPIyldS 89 (118)
+++=+|..+|.|+.+
T Consensus 149 ~IDP~lF~~F~I~~VPafVv~ 169 (212)
T PRK13730 149 QIDPTLFSQYGIRSVPALVVF 169 (212)
T ss_pred eECHHHHHhcCCccccEEEEE
Confidence 333356678888875
No 53
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=57.44 E-value=12 Score=29.32 Aligned_cols=42 Identities=14% Similarity=0.097 Sum_probs=32.1
Q ss_pred CceeEEEEccccchhhHHHHHHHHHHHHhcCCeEEEcCCchH
Q psy9123 21 QSKIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLVPCYPSG 62 (118)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLIPaFavG 62 (118)
.+.+|+|+...-..+--++=...|.+-+.+||++++=..|..
T Consensus 195 P~~~d~Lvi~~P~~~ls~~e~~~l~~yl~~GG~ll~~~d~~~ 236 (271)
T PF09822_consen 195 PDDADVLVIAGPKTDLSEEELYALDQYLMNGGKLLILLDPFS 236 (271)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHcCCeEEEEECCcc
Confidence 467889988877774444446688899999999999776663
No 54
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=56.89 E-value=29 Score=25.48 Aligned_cols=40 Identities=5% Similarity=0.017 Sum_probs=29.2
Q ss_pred CceeEEEEccccch--hhHHHHHHHHHHHHhcCCeEEEcCCc
Q psy9123 21 QSKIAVLLHSDLNN--ITCDEKWMRDIKNQNESGSVLVPCYP 60 (118)
Q Consensus 21 ~~~~~~~~~~~~~~--~~~~eL~~~I~~Tl~~GG~VLIPaFa 60 (118)
..+||+++.+.... ....++.+.+.+.++.||.+++=.+.
T Consensus 96 ~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~ 137 (240)
T TIGR02072 96 DSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFG 137 (240)
T ss_pred CCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 35799998876543 12456788889999999999985443
No 55
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=56.27 E-value=17 Score=32.05 Aligned_cols=63 Identities=14% Similarity=0.129 Sum_probs=52.0
Q ss_pred cCCCceeEEEEccccchhhHHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHHhhcCCC
Q psy9123 18 SNGQSKIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSHLDNSSL 80 (118)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l~~~~~L 80 (118)
.+-.+|-|.||++---+---|-+-+.|..+++.||.|.|.+--+....||---|.+.+.+..|
T Consensus 111 q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I 173 (441)
T COG4098 111 QYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDI 173 (441)
T ss_pred HHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCCe
Confidence 344567788887765555557788899999999999999999999999999999998886654
No 56
>PTZ00146 fibrillarin; Provisional
Probab=56.11 E-value=14 Score=30.72 Aligned_cols=34 Identities=6% Similarity=0.022 Sum_probs=28.1
Q ss_pred eeEEEEccccchhhHHHHHHHHHHHHhcCCeEEE
Q psy9123 23 KIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLV 56 (118)
Q Consensus 23 ~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLI 56 (118)
++|++++.....+..+.+...+.+.|+.||.++|
T Consensus 202 ~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI 235 (293)
T PTZ00146 202 MVDVIFADVAQPDQARIVALNAQYFLKNGGHFII 235 (293)
T ss_pred CCCEEEEeCCCcchHHHHHHHHHHhccCCCEEEE
Confidence 5899998776666666777778889999999998
No 57
>PRK00536 speE spermidine synthase; Provisional
Probab=56.03 E-value=32 Score=27.99 Aligned_cols=53 Identities=9% Similarity=0.087 Sum_probs=39.8
Q ss_pred CceeEEEEccccchhhHHHHHHHHHHHHhcCCeEEE----cCCchHHHHHHHHHHHHHhh
Q psy9123 21 QSKIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLV----PCYPSGVIYDLFECLSSHLD 76 (118)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLI----PaFavGRtqELL~~L~~l~~ 76 (118)
..+|||+++--+.. .++.+.+.+.++.||.++. |.+.-.....+...|.+.+.
T Consensus 137 ~~~fDVIIvDs~~~---~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~ 193 (262)
T PRK00536 137 IKKYDLIICLQEPD---IHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFS 193 (262)
T ss_pred CCcCCEEEEcCCCC---hHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhCC
Confidence 35899999643432 5677889999999999999 77776666777777776654
No 58
>PRK13974 thymidylate kinase; Provisional
Probab=55.74 E-value=36 Score=25.84 Aligned_cols=58 Identities=12% Similarity=0.103 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhcCCeEEE-----------cCCchHHHHHHHHHHHHHhhcCCCCCCCEEEeChhHHHH
Q psy9123 37 CDEKWMRDIKNQNESGSVLV-----------PCYPSGVIYDLFECLSSHLDNSSLTQIPMFFISPVADIS 95 (118)
Q Consensus 37 ~~eL~~~I~~Tl~~GG~VLI-----------PaFavGRtqELL~~L~~l~~~~~Lp~iPIyldSPmA~~a 95 (118)
.+.+.+.|...+.+| .++| =.|+-|.-++.+..+++....+--|++=||||.|-..-.
T Consensus 81 ~~~~~~~i~~~l~~g-~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~ 149 (212)
T PRK13974 81 AQHVSKIIRPALENG-DWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESI 149 (212)
T ss_pred HHHHHHHHHHHHHCC-CEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHH
Confidence 444555667677765 4555 334444456677888776555445788899999987543
No 59
>KOG3348|consensus
Probab=55.63 E-value=8.5 Score=26.97 Aligned_cols=19 Identities=21% Similarity=0.029 Sum_probs=15.8
Q ss_pred ccCCCceeEEEEccccchh
Q psy9123 17 SSNGQSKIAVLLHSDLNNI 35 (118)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~ 35 (118)
|.+-||+|+|+++|+.++-
T Consensus 27 SgGCG~~F~v~IvS~~FeG 45 (85)
T KOG3348|consen 27 SGGCGSMFDVVIVSAAFEG 45 (85)
T ss_pred CCCccceEEEEEEccccCC
Confidence 4556999999999998764
No 60
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=54.79 E-value=17 Score=28.87 Aligned_cols=36 Identities=8% Similarity=0.144 Sum_probs=29.0
Q ss_pred CceeEEEEcccc----chhhHHHHHHHHHHHHhcCCeEEE
Q psy9123 21 QSKIAVLLHSDL----NNITCDEKWMRDIKNQNESGSVLV 56 (118)
Q Consensus 21 ~~~~~~~~~~~~----~~~~~~eL~~~I~~Tl~~GG~VLI 56 (118)
..+||+++.... .....+++...+.+.++.||.++|
T Consensus 201 ~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~l 240 (264)
T smart00138 201 LGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFL 240 (264)
T ss_pred cCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 458999988654 335567889999999999999998
No 61
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=53.87 E-value=23 Score=24.24 Aligned_cols=36 Identities=19% Similarity=0.009 Sum_probs=28.6
Q ss_pred chhhHHHHHHHHHHHHhcCCeEEEcCCc-hHHHHHHH
Q psy9123 33 NNITCDEKWMRDIKNQNESGSVLVPCYP-SGVIYDLF 68 (118)
Q Consensus 33 ~~~~~~eL~~~I~~Tl~~GG~VLIPaFa-vGRtqELL 68 (118)
..+..+++.+.|.+..++||+|+|=|-+ .||+=-++
T Consensus 55 ~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~ 91 (133)
T PF00782_consen 55 ILEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAVA 91 (133)
T ss_dssp GGGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHHH
T ss_pred hHHHHHHHHHhhhhhhcccceeEEEeCCCcccchHHH
Confidence 3455788899999999999999998877 77855433
No 62
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=52.90 E-value=33 Score=26.13 Aligned_cols=47 Identities=11% Similarity=-0.010 Sum_probs=33.9
Q ss_pred CceeEEEEccccchhhHHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHH
Q psy9123 21 QSKIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFEC 70 (118)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~ 70 (118)
..+||+++.... ...+.+.+.+.+.++.||.+++..++ .+.+++-..
T Consensus 110 ~~~fDlV~~~~~--~~~~~~l~~~~~~LkpGG~lv~~~~~-~~~~~l~~~ 156 (187)
T PRK00107 110 EEKFDVVTSRAV--ASLSDLVELCLPLLKPGGRFLALKGR-DPEEEIAEL 156 (187)
T ss_pred CCCccEEEEccc--cCHHHHHHHHHHhcCCCeEEEEEeCC-ChHHHHHHH
Confidence 448999997542 34577888999999999999988655 455554333
No 63
>PRK10634 tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; Provisional
Probab=52.50 E-value=17 Score=27.86 Aligned_cols=20 Identities=15% Similarity=0.140 Sum_probs=16.1
Q ss_pred HHHHHHHhcCCeEEEcCCch
Q psy9123 42 MRDIKNQNESGSVLVPCYPS 61 (118)
Q Consensus 42 ~~I~~Tl~~GG~VLIPaFav 61 (118)
+.+.+.+++||.|++|+..+
T Consensus 11 ~~a~~~L~~G~vv~~PTdTv 30 (190)
T PRK10634 11 AAAVDVLNEERVIAYPTEAV 30 (190)
T ss_pred HHHHHHHHCCCEEEEeCCch
Confidence 34456899999999999865
No 64
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=52.17 E-value=16 Score=30.23 Aligned_cols=51 Identities=8% Similarity=0.005 Sum_probs=42.8
Q ss_pred CceeEEEEccccchhhHHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHH
Q psy9123 21 QSKIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLS 72 (118)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~ 72 (118)
..|||+++ +....+.+.+|...+.+.++.||.+++-=+-.++..++...+.
T Consensus 223 ~~~~dlvv-ANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~ 273 (295)
T PF06325_consen 223 EGKFDLVV-ANILADVLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYK 273 (295)
T ss_dssp CS-EEEEE-EES-HHHHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHH
T ss_pred cccCCEEE-ECCCHHHHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHH
Confidence 47899766 7888899999999999999999999998888889888887764
No 65
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=51.76 E-value=13 Score=27.82 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=24.9
Q ss_pred ceeEEEEccccchhhHHHHHHHHHHHHhcCCeEEEcCC
Q psy9123 22 SKIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLVPCY 59 (118)
Q Consensus 22 ~~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLIPaF 59 (118)
.+||+++...-. ..+.+.+.+.++.||.+++|..
T Consensus 143 ~~fD~I~~~~~~----~~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 143 APFDRILVTAAA----PEIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CCcCEEEEccCc----hhhhHHHHHhcCCCcEEEEEEc
Confidence 469988765432 3344556778999999999987
No 66
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=51.59 E-value=13 Score=30.84 Aligned_cols=38 Identities=11% Similarity=0.027 Sum_probs=29.9
Q ss_pred ceeEEEEccccch--hhHHHHHHHHHHHHhcCCeEEEcCC
Q psy9123 22 SKIAVLLHSDLNN--ITCDEKWMRDIKNQNESGSVLVPCY 59 (118)
Q Consensus 22 ~~~~~~~~~~~~~--~~~~eL~~~I~~Tl~~GG~VLIPaF 59 (118)
.+||+++..+-.+ ...+++.+.+.+.++.||.++|-+.
T Consensus 197 ~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 197 RKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred CCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 4799999877554 1236788889999999999998764
No 67
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=51.30 E-value=75 Score=26.28 Aligned_cols=70 Identities=10% Similarity=0.002 Sum_probs=42.7
Q ss_pred chhhHHHHHHHHHHHHhcCCeEEEcCCchHHH-HHHHHHHHHHhhcCCCCCCCE-EEeChhH-HHHHHHHHHHHh
Q psy9123 33 NNITCDEKWMRDIKNQNESGSVLVPCYPSGVI-YDLFECLSSHLDNSSLTQIPM-FFISPVA-DISLAYSNILAE 104 (118)
Q Consensus 33 ~~~~~~eL~~~I~~Tl~~GG~VLIPaFavGRt-qELL~~L~~l~~~~~Lp~iPI-yldSPmA-~~al~~~~~~~E 104 (118)
.++-..+..++|.++++.-++++| +|+-|-= .-|++++.+.+..+++| +|+ ++|+..- .+..++.+.+.+
T Consensus 9 L~~le~esi~iLrea~~~f~~~vv-~~SGGKDS~VLL~La~ka~~~~~~~-~~vl~iDTG~~FpEt~ef~d~~a~ 81 (301)
T PRK05253 9 LDQLEAESIHILREVAAEFENPVM-LYSIGKDSSVMLHLARKAFYPGKLP-FPLLHVDTGWKFPEMIEFRDRRAK 81 (301)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEE-EecCCHHHHHHHHHHHHhhcccCCC-eeEEEEeCCCCCHHHHHHHHHHHH
Confidence 344556677788888888788877 8888873 33455555555444443 664 7777652 344455544433
No 68
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=50.91 E-value=24 Score=28.09 Aligned_cols=36 Identities=17% Similarity=0.145 Sum_probs=27.6
Q ss_pred CceeEEEEcccc----chhhHHHHHHHHHHHHhcCCeEEE
Q psy9123 21 QSKIAVLLHSDL----NNITCDEKWMRDIKNQNESGSVLV 56 (118)
Q Consensus 21 ~~~~~~~~~~~~----~~~~~~eL~~~I~~Tl~~GG~VLI 56 (118)
..+||+++.... ..+....+.+.+.+.++.||.++|
T Consensus 182 ~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 182 QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 347999887653 345667888899999999999666
No 69
>PLN03194 putative disease resistance protein; Provisional
Probab=50.78 E-value=16 Score=28.84 Aligned_cols=49 Identities=22% Similarity=0.188 Sum_probs=32.7
Q ss_pred CCCCchhHHHHhhcccCCCceeEEEEccccchhh---HHHHHHHHHHHHhcCCeEEEcCC
Q psy9123 3 QNGDNLDSLIASTASSNGQSKIAVLLHSDLNNIT---CDEKWMRDIKNQNESGSVLVPCY 59 (118)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~eL~~~I~~Tl~~GG~VLIPaF 59 (118)
+.||++..-| -..-.+||+.|.|.|.--..+ ++||..++. ++.++||.|
T Consensus 65 ~~G~~i~~~L---~~AIeeSri~IvVfS~~Ya~S~WCLdEL~~I~e-----~~~~ViPIF 116 (187)
T PLN03194 65 KPGDKLFDKI---NSAIRNCKVGVAVFSPRYCESYFCLHELALIME-----SKKRVIPIF 116 (187)
T ss_pred cCCCcHHHHH---HHHHHhCeEEEEEECCCcccchhHHHHHHHHHH-----cCCEEEEEE
Confidence 4566554322 223568999999999866654 677777654 346899997
No 70
>PRK00285 ihfA integration host factor subunit alpha; Reviewed
Probab=50.76 E-value=27 Score=23.70 Aligned_cols=45 Identities=11% Similarity=0.007 Sum_probs=31.0
Q ss_pred hhHHHHhhcccCCCceeEEEEccccchhhHHHHHHHHHHHHhcCCeEEEcCC
Q psy9123 8 LDSLIASTASSNGQSKIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLVPCY 59 (118)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLIPaF 59 (118)
.+.|+..-+...|-|+=| ....++.+.+.|.+.+..|++|-||=|
T Consensus 5 k~el~~~ia~~~~~s~~~-------v~~vl~~~~~~i~~~L~~g~~V~l~gf 49 (99)
T PRK00285 5 KADLAEALFEKVGLSKRE-------AKELVELFFEEIRDALENGEQVKLSGF 49 (99)
T ss_pred HHHHHHHHHHHhCcCHHH-------HHHHHHHHHHHHHHHHHcCCeEEEcCC
Confidence 344444444444433332 356678999999999999999999965
No 71
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=50.64 E-value=66 Score=24.13 Aligned_cols=46 Identities=4% Similarity=-0.128 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHHhhcCCCCCCCEEEe
Q psy9123 38 DEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSHLDNSSLTQIPMFFI 88 (118)
Q Consensus 38 ~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l~~~~~Lp~iPIyld 88 (118)
..+.+.+.+.++.||.+++.... ....++...+. +.+...+.++-|
T Consensus 197 ~~~i~~~~~~L~~gG~~~~~~~~-~~~~~~~~~l~----~~gf~~v~~~~d 242 (251)
T TIGR03534 197 RRIIAQAPRLLKPGGWLLLEIGY-DQGEAVRALFE----AAGFADVETRKD 242 (251)
T ss_pred HHHHHHHHHhcccCCEEEEEECc-cHHHHHHHHHH----hCCCCceEEEeC
Confidence 35677777889999999997532 33344444443 334444444433
No 72
>PRK14968 putative methyltransferase; Provisional
Probab=50.27 E-value=43 Score=23.82 Aligned_cols=36 Identities=14% Similarity=0.015 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHH
Q psy9123 37 CDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLS 72 (118)
Q Consensus 37 ~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~ 72 (118)
.+.+.+.+.+.++.||.+++=.....+..++...+.
T Consensus 127 ~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~ 162 (188)
T PRK14968 127 IDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLE 162 (188)
T ss_pred HHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHH
Confidence 456777777889999987664444433444444443
No 73
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=49.55 E-value=40 Score=28.36 Aligned_cols=71 Identities=8% Similarity=-0.023 Sum_probs=42.3
Q ss_pred ccchhhHHHHHHHHHHHHhcCCeEEEcCCchHHH-HHHHHHHHHHhhcCCCCCCCE-EEeChh-HHHHHHHHHHHH
Q psy9123 31 DLNNITCDEKWMRDIKNQNESGSVLVPCYPSGVI-YDLFECLSSHLDNSSLTQIPM-FFISPV-ADISLAYSNILA 103 (118)
Q Consensus 31 ~~~~~~~~eL~~~I~~Tl~~GG~VLIPaFavGRt-qELL~~L~~l~~~~~Lp~iPI-yldSPm-A~~al~~~~~~~ 103 (118)
+..++-+.+-.++|.+++...+++.+ +|+.|-= .-||+++.+.+..+++ ++|+ |+|+-. =.++.+|.+.+.
T Consensus 17 ~~L~~le~esi~ilrea~~~f~~~~v-~~SgGKDS~VlLhLa~kaf~~~~~-~~pvl~VDTG~~FpEt~efrD~~a 90 (312)
T PRK12563 17 GHLDRLEAESIHILREVVAECSKPVM-LYSIGKDSVVMLHLAMKAFRPTRP-PFPLLHVDTTWKFREMIDFRDRRA 90 (312)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCcEE-EecCChHHHHHHHHHHHhhcccCC-CeeEEEeCCCCCCHHHHHHHHHHH
Confidence 33455566777788888877777766 8888873 3445555556554444 4777 666653 233344444433
No 74
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=49.39 E-value=20 Score=27.39 Aligned_cols=36 Identities=8% Similarity=0.107 Sum_probs=25.2
Q ss_pred CceeEEEEccccchhhHHHHHHHHHHHHhcCCeEEEcCCc
Q psy9123 21 QSKIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLVPCYP 60 (118)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLIPaFa 60 (118)
..+||+++...-.. ++.+.+.+.++.||.+++|.-.
T Consensus 143 ~~~fD~I~~~~~~~----~~~~~l~~~LkpgG~lvi~~~~ 178 (212)
T PRK13942 143 NAPYDRIYVTAAGP----DIPKPLIEQLKDGGIMVIPVGS 178 (212)
T ss_pred CCCcCEEEECCCcc----cchHHHHHhhCCCcEEEEEEcC
Confidence 35799987754333 3334566789999999999643
No 75
>KOG0406|consensus
Probab=49.33 E-value=18 Score=29.30 Aligned_cols=48 Identities=17% Similarity=0.033 Sum_probs=38.6
Q ss_pred CCceeEEEEccccchhhHHHHHHHHHHHHhcCCeEEEcCCchHHHHHHH
Q psy9123 20 GQSKIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLVPCYPSGVIYDLF 68 (118)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL 68 (118)
-..|+-||+|.+-+------+++-|.+|... |+=|.|.+|-.|+|.=+
T Consensus 55 ~hkKVPvL~Hn~k~i~ESliiveYiDe~w~~-~~~iLP~DPy~Ra~arf 102 (231)
T KOG0406|consen 55 VHKKVPVLEHNGKPICESLIIVEYIDETWPS-GPPILPSDPYERAQARF 102 (231)
T ss_pred ccccCCEEEECCceehhhHHHHHHHHhhccC-CCCCCCCCHHHHHHHHH
Confidence 6789999999988722223467889999988 88899999999998743
No 76
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=49.16 E-value=86 Score=23.79 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=28.5
Q ss_pred HHHhcCCeEEEcCCchHHHHHHHHHHHHHhhcC
Q psy9123 46 KNQNESGSVLVPCYPSGVIYDLFECLSSHLDNS 78 (118)
Q Consensus 46 ~Tl~~GG~VLIPaFavGRtqELL~~L~~l~~~~ 78 (118)
.+..+.|.++|-....|++.+++..+....+.|
T Consensus 106 ~~~~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~g 138 (192)
T PRK00414 106 EAVGREGDVLLGISTSGNSGNIIKAIEAARAKG 138 (192)
T ss_pred HHhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCC
Confidence 455688899999999999999999999887776
No 77
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=48.75 E-value=28 Score=24.49 Aligned_cols=41 Identities=12% Similarity=0.047 Sum_probs=30.3
Q ss_pred CCceeEEEEccccchhh---HHHHHHHHHHHHhcC-CeEEEcCCc
Q psy9123 20 GQSKIAVLLHSDLNNIT---CDEKWMRDIKNQNES-GSVLVPCYP 60 (118)
Q Consensus 20 ~~~~~~~~~~~~~~~~~---~~eL~~~I~~Tl~~G-G~VLIPaFa 60 (118)
..|+.-|+|.|.-...+ ..||..++....+.| ..+++|.|-
T Consensus 53 ~~Sr~~I~VlS~~y~~s~wc~~el~~a~~~~~~~~~~~~Il~v~~ 97 (141)
T PF01582_consen 53 ERSRRTIVVLSRNYLSSEWCLFELQEALERLLEEGRDKLILPVFY 97 (141)
T ss_dssp HTEEEEEEEESHHHHHHTHHHHHHHHHHHHHHCSTCTTEEEEESS
T ss_pred hhceeeEEEeecccccccchhhhhhhhhhhccccccccceeeEec
Confidence 45889999988765544 578888888887765 677777654
No 78
>PF00216 Bac_DNA_binding: Bacterial DNA-binding protein; InterPro: IPR000119 Bacteria synthesise a set of small, usually basic proteins of about 90 residues that bind DNA and are known as histone-like proteins [, ]. Examples include the HU protein in Escherichia coli is a dimer of closely related alpha and beta chains and in other bacteria can be a dimer of identical chains. HU-type proteins have been found in a variety of eubacteria, cyanobacteria and archaebacteria, and are also encoded in the chloroplast genome of some algae []. The integration host factor (IHF), a dimer of closely related chains which seem to function in genetic recombination as well as in translational and transcriptional control [] is found in enterobacteria and viral proteins include the African Swine fever virus protein A104R (or LMW5-AR) []. The exact function of these proteins is not yet clear but they are capable of wrapping DNA and stabilising it from denaturation under extreme environmental conditions. The structure is known for one of these proteins []. The protein exists as a dimer and two "beta-arms" function as the non-specific binding site for bacterial DNA. ; GO: 0003677 DNA binding; PDB: 3C4I_B 2O97_A 1MUL_A 1P78_A 1P51_C 1P71_B 2HT0_A 1OWG_A 2IIF_A 1OUZ_A ....
Probab=48.29 E-value=33 Score=22.25 Aligned_cols=26 Identities=19% Similarity=0.171 Sum_probs=21.6
Q ss_pred hhhHHHHHHHHHHHHhcCCeEEEcCC
Q psy9123 34 NITCDEKWMRDIKNQNESGSVLVPCY 59 (118)
Q Consensus 34 ~~~~~eL~~~I~~Tl~~GG~VLIPaF 59 (118)
...++.|.+.|.+.+..|+.|-||-|
T Consensus 22 ~~vl~~~~~~i~~~L~~g~~V~l~g~ 47 (90)
T PF00216_consen 22 EAVLDALFDVIKEALKEGESVKLPGF 47 (90)
T ss_dssp HHHHHHHHHHHHHHHHTT-EEEETTT
T ss_pred HHHHHHHHHHHHHHHhcCCeEEeece
Confidence 45678899999999999999999855
No 79
>PF10131 PTPS_related: 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein; InterPro: IPR018776 This entry is found in various bacterial and archaeal hypothetical membrane proteins, as well as in tetratricopeptide TPR_2 repeat protein. Its function has not yet been established, though it shows similarity to 6-pyruvoyl-tetrahydropterin synthase.
Probab=48.20 E-value=21 Score=32.23 Aligned_cols=54 Identities=13% Similarity=-0.010 Sum_probs=42.2
Q ss_pred cccCCCceeEEEEccccchhhHHHHHHHHHHHHhcCCeEEE-----cCCchHHHHHHHH
Q psy9123 16 ASSNGQSKIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLV-----PCYPSGVIYDLFE 69 (118)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLI-----PaFavGRtqELL~ 69 (118)
.+-+.-+|++++..+.-.-+..+...+.+.+-.+.||+|+| |.+..-|..+.+-
T Consensus 480 ~~~~~l~~~~~v~~~~~~~~~~~~~e~~~~~~~~~G~~v~i~~~~~~~~~~~~~~~~lg 538 (616)
T PF10131_consen 480 YTLEELPKYKVVYLSGPSYKDESKAEKLVSKLARSGGKVVIDMPRIPDDRIARQGEFLG 538 (616)
T ss_pred CCHhHhccceEEEecCCCccchhHHHHHHHHHHhCCCEEEEEcCCCCcchhhccccccc
Confidence 34556789999999999999989889999999999998887 4444455555544
No 80
>smart00411 BHL bacterial (prokaryotic) histone like domain.
Probab=47.79 E-value=33 Score=22.39 Aligned_cols=26 Identities=8% Similarity=-0.022 Sum_probs=22.5
Q ss_pred hhhHHHHHHHHHHHHhcCCeEEEcCC
Q psy9123 34 NITCDEKWMRDIKNQNESGSVLVPCY 59 (118)
Q Consensus 34 ~~~~~eL~~~I~~Tl~~GG~VLIPaF 59 (118)
...++.|.+.|.+.+..|+.|-||=|
T Consensus 22 ~~vl~~l~~~i~~~L~~g~~V~i~g~ 47 (90)
T smart00411 22 KAAVDAFLEIITEALKKGEKVELRGF 47 (90)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEeCc
Confidence 45578899999999999999999864
No 81
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=47.47 E-value=30 Score=25.97 Aligned_cols=34 Identities=21% Similarity=0.121 Sum_probs=24.1
Q ss_pred eeEEEEccccchhhHHHHHHHHHHHHhcCCeEEEcC
Q psy9123 23 KIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLVPC 58 (118)
Q Consensus 23 ~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLIPa 58 (118)
+.|++++ ++-.-.+|+.+.+.+..++||..++|.
T Consensus 126 ~pd~viv--law~y~~EI~~~~~~~~~~gg~fi~pl 159 (160)
T PF08484_consen 126 KPDYVIV--LAWNYKDEIIEKLREYLERGGKFIVPL 159 (160)
T ss_dssp --SEEEE--S-GGGHHHHHHHTHHHHHTT-EEEE-S
T ss_pred CCCEEEE--cChhhHHHHHHHHHHHHhcCCEEEEeC
Confidence 4566665 556677899999999999999999995
No 82
>TIGR00044 pyridoxal phosphate enzyme, YggS family. Members of this protein family include YggS from Escherichia coli and YBL036C, an uncharacterized pyridoxal protein of Saccharomyces cerevisiae.
Probab=46.85 E-value=40 Score=26.15 Aligned_cols=52 Identities=13% Similarity=0.152 Sum_probs=35.4
Q ss_pred HHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHHhhcCCCCCCCEEEeChh-HHHHHHHH
Q psy9123 41 WMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSHLDNSSLTQIPMFFISPV-ADISLAYS 99 (118)
Q Consensus 41 ~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l~~~~~Lp~iPIyldSPm-A~~al~~~ 99 (118)
.+.|.+ +...| +..|++-|+||++.-...+...+ ..|+.+..|+ ..+.....
T Consensus 40 ~~~i~~-l~~~G---~~~fg~~~~~Ea~~k~~~lr~~~---~~~~~~ig~~q~~~~~~~~ 92 (229)
T TIGR00044 40 ASAIQI-AYDAG---QRAFGENYVQELVEKIKLLEDLG---KLEWHFIGPLQSNKDRLVV 92 (229)
T ss_pred HHHHHH-HHHcC---CccccEEcHHHHHHHHHHhcccC---CceEEEECCCcchHHHHHh
Confidence 445555 33445 67999999999998766553322 5889999998 66664333
No 83
>PF14829 GPAT_N: Glycerol-3-phosphate acyltransferase N-terminal; PDB: 1IUQ_A 1K30_A.
Probab=46.77 E-value=46 Score=22.93 Aligned_cols=32 Identities=13% Similarity=0.106 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhhcCCCCCCCEEEeChhHHHHHHHHHHHH
Q psy9123 65 YDLFECLSSHLDNSSLTQIPMFFISPVADISLAYSNILA 103 (118)
Q Consensus 65 qELL~~L~~l~~~~~Lp~iPIyldSPmA~~al~~~~~~~ 103 (118)
|||+-.+.+-.+.|++| +++|....++|.-|.
T Consensus 12 qells~IkkeveaGkLP-------~~va~gmeelY~NYk 43 (77)
T PF14829_consen 12 QELLSGIKKEVEAGKLP-------ANVAAGMEELYQNYK 43 (77)
T ss_dssp HHHHHHHHHHHHTTSS--------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCC-------hhHHHHHHHHHHHHH
Confidence 55666666666666665 445555544444443
No 84
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=46.50 E-value=33 Score=26.78 Aligned_cols=35 Identities=9% Similarity=0.032 Sum_probs=26.5
Q ss_pred CceeEEEEccccchhhHHHHHHHHHHHHhcCCeEEE
Q psy9123 21 QSKIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLV 56 (118)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLI 56 (118)
..+||.++. |-......++.+.+.+.++.||.+++
T Consensus 142 ~~~fD~Vfi-Da~k~~y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 142 KPEFDFAFV-DADKPNYVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred CCCCCEEEE-CCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 357998655 55556666788888889999998875
No 85
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=46.48 E-value=66 Score=24.52 Aligned_cols=54 Identities=11% Similarity=0.097 Sum_probs=32.8
Q ss_pred eeEEEEccc----cchhhHHHHHHHHHHHHhcCCeEEEcC---CchHHHHHHHHHHHHHhh
Q psy9123 23 KIAVLLHSD----LNNITCDEKWMRDIKNQNESGSVLVPC---YPSGVIYDLFECLSSHLD 76 (118)
Q Consensus 23 ~~~~~~~~~----~~~~~~~eL~~~I~~Tl~~GG~VLIPa---FavGRtqELL~~L~~l~~ 76 (118)
++|+++.+. +..+...++.+.+.+.++.||.++|=- +.-.+..+.+..++..+.
T Consensus 122 ~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~ 182 (239)
T TIGR00740 122 NASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFK 182 (239)
T ss_pred CCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHH
Confidence 466554432 333345678889999999999988742 222344555555554443
No 86
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=46.46 E-value=21 Score=24.49 Aligned_cols=42 Identities=7% Similarity=0.034 Sum_probs=32.7
Q ss_pred CCceeEEEEccccchhh--HHHHHHHHHHHHhcCCeEEEcCCch
Q psy9123 20 GQSKIAVLLHSDLNNIT--CDEKWMRDIKNQNESGSVLVPCYPS 61 (118)
Q Consensus 20 ~~~~~~~~~~~~~~~~~--~~eL~~~I~~Tl~~GG~VLIPaFav 61 (118)
.+.+||+++..+..+-. ..++.+.+.+.++.||.++|=..-.
T Consensus 75 ~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 75 PDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp HSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred cccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 34589999988766543 5678888899999999999877654
No 87
>TIGR00057 Sua5/YciO/YrdC/YwlC family protein. partial match to sua5, which is involved in regulation of translation initiation. 3' end of sua5 has matches to sua5, BS3690, and weakly to AF0781 and BB0734.
Probab=46.40 E-value=21 Score=27.36 Aligned_cols=21 Identities=19% Similarity=0.216 Sum_probs=16.7
Q ss_pred HHHHHHHHhcCCeEEEcCCch
Q psy9123 41 WMRDIKNQNESGSVLVPCYPS 61 (118)
Q Consensus 41 ~~~I~~Tl~~GG~VLIPaFav 61 (118)
.+.+.+.+++||.|++|+..+
T Consensus 11 i~~a~~~L~~G~ii~~PTdTv 31 (201)
T TIGR00057 11 IEQAVKILRKGGIVVYPTDTV 31 (201)
T ss_pred HHHHHHHHHCCCEEEEeCCCH
Confidence 344556899999999999865
No 88
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=45.83 E-value=33 Score=23.67 Aligned_cols=49 Identities=18% Similarity=0.055 Sum_probs=36.4
Q ss_pred eEEEEccccchhhHHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHH
Q psy9123 24 IAVLLHSDLNNITCDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSS 73 (118)
Q Consensus 24 ~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~ 73 (118)
.-+++..|+.++..+++.+-+...+.+.|--++=...-|| ..|-|-+..
T Consensus 10 ~~~Il~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~-r~LAY~I~k 58 (97)
T CHL00123 10 TMYLLKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGK-RKLSYKINK 58 (97)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecC-eeeeEEcCC
Confidence 4578889999999999999999998776655566777774 445455543
No 89
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=45.83 E-value=13 Score=28.14 Aligned_cols=35 Identities=11% Similarity=0.069 Sum_probs=25.1
Q ss_pred ceeEEEEccccchhhHHHHHHHHHHHHhcCCeEEEcCCc
Q psy9123 22 SKIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLVPCYP 60 (118)
Q Consensus 22 ~~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLIPaFa 60 (118)
.+||+++...-. ..+.+.+.+.++.||.+++|.-.
T Consensus 145 ~~fD~Ii~~~~~----~~~~~~~~~~L~~gG~lv~~~~~ 179 (215)
T TIGR00080 145 APYDRIYVTAAG----PKIPEALIDQLKEGGILVMPVGE 179 (215)
T ss_pred CCCCEEEEcCCc----ccccHHHHHhcCcCcEEEEEEcC
Confidence 479988865432 23345567789999999999654
No 90
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=45.59 E-value=25 Score=33.60 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=31.8
Q ss_pred CCceeEEEEccccchhh---HHHHHHHHHHHHhcCCeEEEcCC
Q psy9123 20 GQSKIAVLLHSDLNNIT---CDEKWMRDIKNQNESGSVLVPCY 59 (118)
Q Consensus 20 ~~~~~~~~~~~~~~~~~---~~eL~~~I~~Tl~~GG~VLIPaF 59 (118)
.+||++|.+-|.--+.+ .+||.+++. ..+.+|.++||+|
T Consensus 64 ~~s~~~ivv~s~~ya~s~wcl~el~~i~~-~~~~~~~~v~pvf 105 (1153)
T PLN03210 64 RDSRIAVVVFSKNYASSSWCLNELLEIVR-CKEELGQLVIPVF 105 (1153)
T ss_pred HhCeEEEEEecCCcccchHHHHHHHHHHH-hhhhcCceEEEEE
Confidence 35999999999987776 588886554 5688999999996
No 91
>TIGR00530 AGP_acyltrn 1-acyl-sn-glycerol-3-phosphate acyltransferases. 1-acyl-sn-glycerol-3-phosphate acyltransferase is also called 1-AGP acyltransferase, lysophosphatidic acid acyltransferase, and LPA acyltransferase.
Probab=45.34 E-value=29 Score=23.13 Aligned_cols=17 Identities=12% Similarity=0.016 Sum_probs=8.3
Q ss_pred HHHHHHHHHHhcCCeEE
Q psy9123 39 EKWMRDIKNQNESGSVL 55 (118)
Q Consensus 39 eL~~~I~~Tl~~GG~VL 55 (118)
++.+.+.+.+++|+.++
T Consensus 77 ~~~~~~~~~l~~g~~v~ 93 (130)
T TIGR00530 77 TALKAAIEVLKQGRSIG 93 (130)
T ss_pred HHHHHHHHHHhCCCEEE
Confidence 33444455555555544
No 92
>PRK07402 precorrin-6B methylase; Provisional
Probab=44.47 E-value=49 Score=24.50 Aligned_cols=39 Identities=13% Similarity=0.101 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHH
Q psy9123 36 TCDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSH 74 (118)
Q Consensus 36 ~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l 74 (118)
..+++.+.+.+.++.||.+++-+...+-..++...+.++
T Consensus 120 ~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~ 158 (196)
T PRK07402 120 PIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQL 158 (196)
T ss_pred CHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhc
Confidence 456777888888999999999998877777777776554
No 93
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=44.30 E-value=32 Score=24.51 Aligned_cols=59 Identities=10% Similarity=0.065 Sum_probs=37.0
Q ss_pred chhhHHHHHHHHHHHHhcCCeEEEcCC-chH-HHHHHHHHHHHHhhcCCCCCCCEEEeChhH
Q psy9123 33 NNITCDEKWMRDIKNQNESGSVLVPCY-PSG-VIYDLFECLSSHLDNSSLTQIPMFFISPVA 92 (118)
Q Consensus 33 ~~~~~~eL~~~I~~Tl~~GG~VLIPaF-avG-RtqELL~~L~~l~~~~~Lp~iPIyldSPmA 92 (118)
..+.+++..+.+.+++++||.|++=-- .++ -++++.+.+.....-.++ ..|....++-+
T Consensus 17 ~~~~i~~aa~~i~~~~~~gg~i~~~G~G~S~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~ 77 (138)
T PF13580_consen 17 QAEAIEKAADLIAEALRNGGRIFVCGNGHSAAIASHFAADLGGLFGVNRI-LLPAIALNDDA 77 (138)
T ss_dssp SHHHHHHHHHHHHHHHHTT--EEEEESTHHHHHHHHHHHHHHCHSSSTSS-S-SEEETTSTH
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEcCchhhhHHHHHHHHHhcCcCCCcc-cccccccccch
Confidence 456678899999999999999987432 222 357777777766554443 36666665533
No 94
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=44.18 E-value=22 Score=27.51 Aligned_cols=36 Identities=6% Similarity=0.016 Sum_probs=26.8
Q ss_pred ceeEEEEccccch---hhHHHHHHHHHHHHhcCCeEEEcC
Q psy9123 22 SKIAVLLHSDLNN---ITCDEKWMRDIKNQNESGSVLVPC 58 (118)
Q Consensus 22 ~~~~~~~~~~~~~---~~~~eL~~~I~~Tl~~GG~VLIPa 58 (118)
.+||+++...... ++ .++.+.+.+.++.||.++|=.
T Consensus 111 ~~fD~V~~~~vl~~~~~~-~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 111 TPVDLILFHAVLEWVADP-KSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred CCCCEEEehhHHHhhCCH-HHHHHHHHHHcCCCeEEEEEE
Confidence 5799998776543 33 466778889999999998743
No 95
>PRK14967 putative methyltransferase; Provisional
Probab=43.90 E-value=59 Score=24.69 Aligned_cols=36 Identities=17% Similarity=-0.015 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHH
Q psy9123 37 CDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLS 72 (118)
Q Consensus 37 ~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~ 72 (118)
.+.+++.+.+.++.||.+++-........+.+..+.
T Consensus 138 ~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~ 173 (223)
T PRK14967 138 LDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLS 173 (223)
T ss_pred HHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHH
Confidence 355666777889999999983333333444444443
No 96
>TIGR00987 himA integration host factor, alpha subunit. This protein forms a site-specific DNA-binding heterodimer with the integration host factor beta subunit. It is closely related to the DNA-binding protein HU.
Probab=43.87 E-value=40 Score=22.81 Aligned_cols=27 Identities=4% Similarity=-0.023 Sum_probs=23.3
Q ss_pred chhhHHHHHHHHHHHHhcCCeEEEcCC
Q psy9123 33 NNITCDEKWMRDIKNQNESGSVLVPCY 59 (118)
Q Consensus 33 ~~~~~~eL~~~I~~Tl~~GG~VLIPaF 59 (118)
.+..++.+.+.|.+.+.+|++|-|+=|
T Consensus 22 v~~vv~~~~~~i~~~L~~g~~V~l~gf 48 (96)
T TIGR00987 22 AKELVELFFEEIRRALENGEQVKLSGF 48 (96)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEecCC
Confidence 356678999999999999999999865
No 97
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=43.79 E-value=29 Score=24.28 Aligned_cols=30 Identities=20% Similarity=0.124 Sum_probs=17.6
Q ss_pred eeEEEEccccchhhHHHHHHHHHHHHhcCC
Q psy9123 23 KIAVLLHSDLNNITCDEKWMRDIKNQNESG 52 (118)
Q Consensus 23 ~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG 52 (118)
|+-++.+|--.+...+.+++.+.+.+++-|
T Consensus 2 kilii~gS~r~~~~t~~l~~~~~~~l~~~g 31 (152)
T PF03358_consen 2 KILIINGSPRKNSNTRKLAEAVAEQLEEAG 31 (152)
T ss_dssp EEEEEESSSSTTSHHHHHHHHHHHHHHHTT
T ss_pred EEEEEECcCCCCCHHHHHHHHHHHHHHHcC
Confidence 455566665455555666666666665544
No 98
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=43.71 E-value=80 Score=22.32 Aligned_cols=26 Identities=35% Similarity=0.263 Sum_probs=16.5
Q ss_pred eEEEcCCchHHHHHHHHHHHHHhhcC
Q psy9123 53 SVLVPCYPSGVIYDLFECLSSHLDNS 78 (118)
Q Consensus 53 ~VLIPaFavGRtqELL~~L~~l~~~~ 78 (118)
+|+||++--++..-|-.+|..+.++.
T Consensus 1 sviip~~n~~~~~~l~~~l~Sl~~q~ 26 (201)
T cd04195 1 SVLMSVYIKEKPEFLREALESILKQT 26 (201)
T ss_pred CEEEEccccchHHHHHHHHHHHHhcC
Confidence 46777776665555666666666654
No 99
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=43.00 E-value=1.6e+02 Score=23.12 Aligned_cols=38 Identities=11% Similarity=0.115 Sum_probs=28.5
Q ss_pred CceeEEEEccccc----hhhHHHHHHHHHHHHhcCCeEEEcC
Q psy9123 21 QSKIAVLLHSDLN----NITCDEKWMRDIKNQNESGSVLVPC 58 (118)
Q Consensus 21 ~~~~~~~~~~~~~----~~~~~eL~~~I~~Tl~~GG~VLIPa 58 (118)
..+||+++..+.. .+...++.+.+.+.++.||.++|--
T Consensus 115 ~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 115 ENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITD 156 (263)
T ss_pred CCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 3579999886532 2245678888899999999999843
No 100
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=42.72 E-value=44 Score=23.75 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=20.6
Q ss_pred EEEE-ccccch--hhHHHHHHHHHHHHhcCC----eEEEcCCchHH
Q psy9123 25 AVLL-HSDLNN--ITCDEKWMRDIKNQNESG----SVLVPCYPSGV 63 (118)
Q Consensus 25 ~~~~-~~~~~~--~~~~eL~~~I~~Tl~~GG----~VLIPaFavGR 63 (118)
||.+ .+..++ +..-||+ .+.+++++.| +++||-||-+|
T Consensus 49 dv~iiqs~~~~~nd~lmeLl-l~i~a~r~~~a~~i~~ViPYl~YaR 93 (116)
T PF13793_consen 49 DVFIIQSTSPPVNDNLMELL-LLIDALRRAGAKRITLVIPYLPYAR 93 (116)
T ss_dssp EEEEE---SSSHHHHHHHHH-HHHHHHHHTTBSEEEEEESS-TTTT
T ss_pred ceEEEEecCCchhHHHHHHH-HHHHHHHHcCCcEEEEeccchhhhh
Confidence 3444 444433 4555655 3445666666 58899999776
No 101
>PRK00347 putative DNA-binding transcriptional regulator; Reviewed
Probab=42.71 E-value=12 Score=30.08 Aligned_cols=57 Identities=19% Similarity=0.095 Sum_probs=43.6
Q ss_pred C-CceeEEEEccccchhhHHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHHhhcCC
Q psy9123 20 G-QSKIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSHLDNSS 79 (118)
Q Consensus 20 ~-~~~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l~~~~~ 79 (118)
| +|+||.||-.+-..+..-|...+ |+..+|.-+.|=-|..|-..=|..|.++.++|.
T Consensus 114 g~~SR~Dfll~~~~~~~~~vEVKsv---tL~~~~~A~FPDapT~RG~kHl~eL~~l~~~G~ 171 (234)
T PRK00347 114 GENSRIDFLLTADDRPDCYVEVKSV---TLEENGLAMFPDAVTERGQKHLRELIELAKEGH 171 (234)
T ss_pred CCCCcEEEEEecCCCCcEEEEEcCE---EeCCCCEEECCCCCcHHHHHHHHHHHHHHHCCC
Confidence 5 69999999743323344444433 777899999999999999999999988887774
No 102
>PF08900 DUF1845: Domain of unknown function (DUF1845); InterPro: IPR014996 Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.
Probab=42.52 E-value=1.2e+02 Score=23.86 Aligned_cols=44 Identities=18% Similarity=0.309 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhhc--CCC---------C-CCCEEEeChhHHHHHHHHHHHHhh
Q psy9123 62 GVIYDLFECLSSHLDN--SSL---------T-QIPMFFISPVADISLAYSNILAEW 105 (118)
Q Consensus 62 GRtqELL~~L~~l~~~--~~L---------p-~iPIyldSPmA~~al~~~~~~~Ew 105 (118)
.-++++...|++.+++ .++ | ++|||+-||.+..+..+-.-|-..
T Consensus 76 ~~l~~~~~~l~~~l~~~p~~i~i~~~~s~~P~~~~l~~~splGy~~v~LL~~yD~L 131 (217)
T PF08900_consen 76 QELQELIARLDALLAELPKGISISEIQSVQPVDVPLFFRSPLGYRCVYLLVDYDQL 131 (217)
T ss_pred HHHHHHHHHHHHHHHhCcCCccccccccCCCccceeEecCHHHHHHHHHHHHHHHH
Confidence 4567777777777666 221 3 599999999999997766665443
No 103
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=42.16 E-value=25 Score=26.70 Aligned_cols=39 Identities=15% Similarity=0.077 Sum_probs=20.4
Q ss_pred CceeEEEEccccchhhHHHHHHHHHHHHhcCCeEEEcCCc
Q psy9123 21 QSKIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLVPCYP 60 (118)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLIPaFa 60 (118)
=|++.+|++....-- -+++++.+.+-++.||++|+=..+
T Consensus 55 L~~Ykllv~P~~~~l-~~~~~~~L~~yV~~GG~li~~~~t 93 (207)
T PF08532_consen 55 LSGYKLLVLPSLYIL-SPEFAERLRAYVENGGTLILTPRT 93 (207)
T ss_dssp -TT-SEEEES--SC---HHH---HHHHHT-SS-EEE-TTT
T ss_pred cccCcEEEEeeEEEE-ChHHHHHHHHHHHCCCEEEEEccc
Confidence 455778887776533 367788999999999999975433
No 104
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=42.11 E-value=13 Score=27.10 Aligned_cols=39 Identities=15% Similarity=0.260 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhcCCCCCCCEEEeChhHHHHHHHHHHHHhhhh
Q psy9123 65 YDLFECLSSHLDNSSLTQIPMFFISPVADISLAYSNILAEWNT 107 (118)
Q Consensus 65 qELL~~L~~l~~~~~Lp~iPIyldSPmA~~al~~~~~~~Ewl~ 107 (118)
.+||-.+-+..++.+|. +|+|++--.-..+ ++.+|||+.
T Consensus 43 ~Dllge~v~a~h~~Gir-v~ay~~~~~d~~~---~~~HPeW~~ 81 (132)
T PF14871_consen 43 RDLLGEQVEACHERGIR-VPAYFDFSWDEDA---AERHPEWFV 81 (132)
T ss_pred cCHHHHHHHHHHHCCCE-EEEEEeeecChHH---HHhCCceee
Confidence 57777777777777884 8888888766666 888999964
No 105
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=42.09 E-value=1e+02 Score=24.24 Aligned_cols=40 Identities=3% Similarity=-0.116 Sum_probs=28.3
Q ss_pred CceeEEEEccccch--hhHHHHHHHHHHHHhcCCeEEEcCCc
Q psy9123 21 QSKIAVLLHSDLNN--ITCDEKWMRDIKNQNESGSVLVPCYP 60 (118)
Q Consensus 21 ~~~~~~~~~~~~~~--~~~~eL~~~I~~Tl~~GG~VLIPaFa 60 (118)
...||+++.+.... ...+++.+-+.+.++.||.++|-.+.
T Consensus 143 ~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~ 184 (261)
T PLN02233 143 DCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFN 184 (261)
T ss_pred CCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 34699887654222 12466778888999999999886554
No 106
>PF01300 Sua5_yciO_yrdC: Telomere recombination; InterPro: IPR006070 The YrdC family of hypothetical proteins are widely distributed in eukaryotes and prokaryotes and occur as: (i) independent proteins, (ii) with C-terminal extensions, and (iii) as domains in larger proteins, some of which are implicated in regulation []. The YrdC protein, which consists solely of this domain, forms an alpha/beta twisted open-sheet structure composed of seven alpha helices and seven beta strands []. YrdC from Escherichia coli preferentially binds to double-stranded RNA and DNA. YrdC is predicted to be an rRNA maturation factor, as deletions in its gene lead to immature ribosomal 30S subunits and, consequently, fewer translating ribosomes []. Therefore, YrdC may function by keeping an rRNA structure needed for proper processing of 16S rRNA, especially at lower temperatures. Sua5 is an example of a multi-domain protein that contains an N-terminal YrdC-like domain and a C-terminal Sua5 domain. Sua5 was identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a translation initiation defect in the cytochrome c gene and is required for normal growth in yeast; however its exact function remains unknown []. HypF is involved in the synthesis of the active site of [NiFe]-hydrogenases [].; PDB: 3L7V_A 1KK9_A 1K7J_A 3TTD_A 3TSQ_A 3TTC_A 3TSP_A 3TTF_A 3TSU_A 2EQA_A ....
Probab=41.67 E-value=15 Score=27.37 Aligned_cols=44 Identities=14% Similarity=0.129 Sum_probs=22.0
Q ss_pred HHHhcCCeEEEcCCch---H---HHHHHHHHHHHHhhcCCCCCCCEEEeC
Q psy9123 46 KNQNESGSVLVPCYPS---G---VIYDLFECLSSHLDNSSLTQIPMFFIS 89 (118)
Q Consensus 46 ~Tl~~GG~VLIPaFav---G---RtqELL~~L~~l~~~~~Lp~iPIyldS 89 (118)
+.+++||.|++|++.+ | -=.+=+.-|.++.++..-.++.+++.|
T Consensus 1 e~Lk~G~vvi~PTdT~ygl~~~~~n~~av~ri~~iK~R~~~Kpl~ll~~~ 50 (179)
T PF01300_consen 1 EILKAGGVVIYPTDTVYGLGCDAFNPEAVERIYKIKQRPKNKPLILLVSS 50 (179)
T ss_dssp -HHHTT-EEEEEESSSEEEEEETTSHHHHHHHHHHHTSSTTS--EEEESS
T ss_pred CccccCCEEEEECCCEEEEEEecCCHHHHHHHHHhhcccCCCCEEEEECC
Confidence 4789999999998753 1 112233333333443322346666655
No 107
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=41.18 E-value=73 Score=28.63 Aligned_cols=57 Identities=16% Similarity=0.194 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhcCCeEEE---cCCchHH--HHHHHHHHHHHhhcCCCCCCCEEEeChhHHHHHHHH
Q psy9123 38 DEKWMRDIKNQNESGSVLV---PCYPSGV--IYDLFECLSSHLDNSSLTQIPMFFISPVADISLAYS 99 (118)
Q Consensus 38 ~eL~~~I~~Tl~~GG~VLI---PaFavGR--tqELL~~L~~l~~~~~Lp~iPIyldSPmA~~al~~~ 99 (118)
+++. .|.+++..+..||| |+-+.+. ++.|+..+.++.++| +-|.|+|.-=.++.+++
T Consensus 151 rQ~V-eIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~G----v~ii~ISHrl~Ei~~i~ 212 (500)
T COG1129 151 RQMV-EIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQG----VAIIYISHRLDEVFEIA 212 (500)
T ss_pred HHHH-HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCC----CEEEEEcCcHHHHHHhc
Confidence 4444 57788888999999 8877766 889999999998875 66889998777775544
No 108
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=41.16 E-value=54 Score=29.90 Aligned_cols=77 Identities=16% Similarity=0.111 Sum_probs=52.0
Q ss_pred ccccchhhHHHHHHHHHH-HHhcCCeEEEcCCchHHHHHHHHHHHHHhhcCCCCCCCEEEeChhHHHHHHHHHHHHhhhh
Q psy9123 29 HSDLNNITCDEKWMRDIK-NQNESGSVLVPCYPSGVIYDLFECLSSHLDNSSLTQIPMFFISPVADISLAYSNILAEWNT 107 (118)
Q Consensus 29 ~~~~~~~~~~eL~~~I~~-Tl~~GG~VLIPaFavGRtqELL~~L~~l~~~~~Lp~iPIyldSPmA~~al~~~~~~~Ewl~ 107 (118)
+++.....-.+.++.+.+ ...+.|+..|=++..|..-+ .-.++++.. .+|.|-+-+.|.++....-.|.+|..
T Consensus 382 ~~~~~~~~~~~~a~~~~~~~~~~~~k~~v~~~~gg~~~~---~~~~~l~~~---gip~~~~pe~a~~a~~~l~~~~~~~~ 455 (598)
T COG1042 382 VLPPASADPEETAEAIIRATAKKRGKPVVVSSMGGESSE---KARRLLEEA---GIPTYPTPERAVKALSALARYRRWLK 455 (598)
T ss_pred ecCCCCCCchhhhHHHHHhhhhhCCCceEEEecCCcchH---HHHHHhhhc---CCCCccCchHHHHHHHHHHHHHHHHH
Confidence 344443334555666665 78899999999999982111 112234443 47799999999999988888888876
Q ss_pred HHHH
Q psy9123 108 KVEV 111 (118)
Q Consensus 108 ~~~~ 111 (118)
..++
T Consensus 456 ~~~~ 459 (598)
T COG1042 456 KLRE 459 (598)
T ss_pred hhcc
Confidence 6543
No 109
>PRK11630 hypothetical protein; Provisional
Probab=41.15 E-value=28 Score=26.92 Aligned_cols=20 Identities=10% Similarity=0.258 Sum_probs=16.0
Q ss_pred HHHHHHHhcCCeEEEcCCch
Q psy9123 42 MRDIKNQNESGSVLVPCYPS 61 (118)
Q Consensus 42 ~~I~~Tl~~GG~VLIPaFav 61 (118)
+.+.+.+++||.|++|+..+
T Consensus 18 ~~a~~~L~~G~vi~~PTdTv 37 (206)
T PRK11630 18 NQAVEIVRKGGVIVYPTDSG 37 (206)
T ss_pred HHHHHHHHCCCEEEEeCCCh
Confidence 34446899999999999765
No 110
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=40.84 E-value=2.2e+02 Score=24.03 Aligned_cols=36 Identities=17% Similarity=0.111 Sum_probs=26.7
Q ss_pred ceeEEEEccccchh--hHHHHHHHHHHHHhcCCeEEEc
Q psy9123 22 SKIAVLLHSDLNNI--TCDEKWMRDIKNQNESGSVLVP 57 (118)
Q Consensus 22 ~~~~~~~~~~~~~~--~~~eL~~~I~~Tl~~GG~VLIP 57 (118)
.+||+++..+...- ..+++...+.+.++.||.++|-
T Consensus 331 ~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~ 368 (475)
T PLN02336 331 NSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLIS 368 (475)
T ss_pred CCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEE
Confidence 47999887654331 2356778889999999999974
No 111
>PRK08317 hypothetical protein; Provisional
Probab=40.64 E-value=45 Score=24.28 Aligned_cols=35 Identities=9% Similarity=0.029 Sum_probs=24.8
Q ss_pred ceeEEEEccccch--hhHHHHHHHHHHHHhcCCeEEE
Q psy9123 22 SKIAVLLHSDLNN--ITCDEKWMRDIKNQNESGSVLV 56 (118)
Q Consensus 22 ~~~~~~~~~~~~~--~~~~eL~~~I~~Tl~~GG~VLI 56 (118)
.+||+++...... .....+.+.+.+.++.||.+++
T Consensus 86 ~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~ 122 (241)
T PRK08317 86 GSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVV 122 (241)
T ss_pred CCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEE
Confidence 4788877654432 1235667788889999999886
No 112
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=40.44 E-value=50 Score=25.52 Aligned_cols=43 Identities=12% Similarity=-0.075 Sum_probs=22.9
Q ss_pred hhHHHHHHHHH-HHHhcCCeEEEcCCc--hHHHHHHHHHHHHHhhcC
Q psy9123 35 ITCDEKWMRDI-KNQNESGSVLVPCYP--SGVIYDLFECLSSHLDNS 78 (118)
Q Consensus 35 ~~~~eL~~~I~-~Tl~~GG~VLIPaFa--vGRtqELL~~L~~l~~~~ 78 (118)
.+++++.+... +.+ ++-.|||=++. .+-..++...+.++.+++
T Consensus 134 ~aL~~~~~~~~~~~~-~~t~vvIiSDg~~~~~~~~~~~~l~~l~~r~ 179 (222)
T PF05762_consen 134 QALREFLRQYARPDL-RRTTVVIISDGWDTNDPEPLAEELRRLRRRG 179 (222)
T ss_pred HHHHHHHHHhhcccc-cCcEEEEEecccccCChHHHHHHHHHHHHhC
Confidence 44455555554 234 55556666655 444555555665555554
No 113
>PLN03075 nicotianamine synthase; Provisional
Probab=40.16 E-value=33 Score=28.60 Aligned_cols=48 Identities=8% Similarity=-0.008 Sum_probs=35.6
Q ss_pred CceeEEEEcccc---chhhHHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHH
Q psy9123 21 QSKIAVLLHSDL---NNITCDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFEC 70 (118)
Q Consensus 21 ~~~~~~~~~~~~---~~~~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~ 70 (118)
..+||++...-+ .....+++.+.+.+.++.||.+++=+ +-|--+ +||-
T Consensus 193 l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~-~~G~r~-~LYp 243 (296)
T PLN03075 193 LKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS-AHGARA-FLYP 243 (296)
T ss_pred cCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec-ccchHh-hcCC
Confidence 357999887733 23566888999999999999999988 445433 5554
No 114
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=40.09 E-value=51 Score=23.18 Aligned_cols=39 Identities=8% Similarity=0.077 Sum_probs=29.5
Q ss_pred ceeEEEEccccc--hhhHHHHHHHHHHHHhcCCeEEEcCCc
Q psy9123 22 SKIAVLLHSDLN--NITCDEKWMRDIKNQNESGSVLVPCYP 60 (118)
Q Consensus 22 ~~~~~~~~~~~~--~~~~~eL~~~I~~Tl~~GG~VLIPaFa 60 (118)
.+||+++..... -...+++.+.+.+.++.||.+++=.+.
T Consensus 72 ~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 72 EKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 799999887543 223356788889999999998876666
No 115
>PRK05642 DNA replication initiation factor; Validated
Probab=40.02 E-value=47 Score=25.77 Aligned_cols=38 Identities=8% Similarity=0.037 Sum_probs=30.4
Q ss_pred eeEEEEccccc-----hhhHHHHHHHHHHHHhcCCeEEEcCCc
Q psy9123 23 KIAVLLHSDLN-----NITCDEKWMRDIKNQNESGSVLVPCYP 60 (118)
Q Consensus 23 ~~~~~~~~~~~-----~~~~~eL~~~I~~Tl~~GG~VLIPaFa 60 (118)
+.|+|+.-|.- ++..++|.+++++...+|+.+||.+..
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~ 139 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASK 139 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCC
Confidence 45888887773 345678999999999999999999874
No 116
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=39.99 E-value=38 Score=28.39 Aligned_cols=49 Identities=8% Similarity=-0.011 Sum_probs=36.8
Q ss_pred ceeEEEEccccchhhHHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHH
Q psy9123 22 SKIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECL 71 (118)
Q Consensus 22 ~~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L 71 (118)
.+|||+|+ ...++...+|..-+.+.++.||.++.-=.-......+...+
T Consensus 228 ~~~DvIVA-NILA~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~ 276 (300)
T COG2264 228 GPFDVIVA-NILAEVLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAY 276 (300)
T ss_pred CcccEEEe-hhhHHHHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHH
Confidence 58998765 56889999999999999999999997554444444444433
No 117
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=39.98 E-value=1e+02 Score=23.65 Aligned_cols=22 Identities=9% Similarity=-0.020 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhcCCeEEEcCC
Q psy9123 38 DEKWMRDIKNQNESGSVLVPCY 59 (118)
Q Consensus 38 ~eL~~~I~~Tl~~GG~VLIPaF 59 (118)
+++.+.+.+.++.||.+++..-
T Consensus 218 ~~~~~~~~~~Lk~gG~l~~e~g 239 (275)
T PRK09328 218 RRIIEQAPRYLKPGGWLLLEIG 239 (275)
T ss_pred HHHHHHHHHhcccCCEEEEEEC
Confidence 4556666688999999999763
No 118
>PF03749 SfsA: Sugar fermentation stimulation protein; InterPro: IPR005224 The sugar fermentation stimulation protein is a probable regulatory factor involved in maltose metabolism. It contains a putative DNA-binding domain, and was isolated as a gene which enabled Escherichia coli W3110 (strain MK2001) to use maltose [].
Probab=39.68 E-value=10 Score=30.06 Aligned_cols=57 Identities=18% Similarity=0.126 Sum_probs=45.0
Q ss_pred CCCceeEEEEccccchhhHHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHHhhcCC
Q psy9123 19 NGQSKIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSHLDNSS 79 (118)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l~~~~~ 79 (118)
-|+|+||.+|-.+.. ...-|... =|+..+|..+.|--|..|-+.=|..|.++.++|.
T Consensus 101 ~g~sR~Dfll~~~~~-~~~vEVKs---vtL~~~~~a~FPDApT~RG~kHL~eL~~l~~~G~ 157 (215)
T PF03749_consen 101 YGNSRFDFLLEDNGG-KCYVEVKS---VTLVEDGIAMFPDAPTERGRKHLRELAELAEEGY 157 (215)
T ss_pred eCCccEEEEEEcCCC-CEEEEEee---eEeccCCcccCCCccchHHHHHHHHHHHHHhccC
Confidence 589999999987654 44334332 3577889999999999999999999998888874
No 119
>PRK00698 tmk thymidylate kinase; Validated
Probab=39.30 E-value=86 Score=22.70 Aligned_cols=58 Identities=12% Similarity=0.038 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhcCCeEEE-------cCCch---HHHHHHHHHHHHHhhcCCCCCCCEEEeChhHHH
Q psy9123 37 CDEKWMRDIKNQNESGSVLV-------PCYPS---GVIYDLFECLSSHLDNSSLTQIPMFFISPVADI 94 (118)
Q Consensus 37 ~~eL~~~I~~Tl~~GG~VLI-------PaFav---GRtqELL~~L~~l~~~~~Lp~iPIyldSPmA~~ 94 (118)
.+.+.+.+...+.+|..|+. -+|.. |...+.+..+.+.+.....|++=||++.|-...
T Consensus 74 ~~~~~~~i~~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~ 141 (205)
T PRK00698 74 AQHLEEVIKPALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVG 141 (205)
T ss_pred HHHHHHHHHHHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHH
Confidence 34455566667777777777 23321 333556666666665555688889999998653
No 120
>PRK13973 thymidylate kinase; Provisional
Probab=39.26 E-value=81 Score=23.90 Aligned_cols=61 Identities=13% Similarity=-0.021 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHHHHhcCCeEEEcCCc----------hHHHHHHHHHHHHHhhcCCCCCCCEEEeChhHHHH
Q psy9123 35 ITCDEKWMRDIKNQNESGSVLVPCYP----------SGVIYDLFECLSSHLDNSSLTQIPMFFISPVADIS 95 (118)
Q Consensus 35 ~~~~eL~~~I~~Tl~~GG~VLIPaFa----------vGRtqELL~~L~~l~~~~~Lp~iPIyldSPmA~~a 95 (118)
+..+.+.+.|..++++|..||.==|- -|--.+.+..|.........|++=+|||.|-....
T Consensus 73 ~r~~~~~~~i~~~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~ 143 (213)
T PRK13973 73 ARDDHVEEVIRPALARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGL 143 (213)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHH
Confidence 34456667788889988877743222 11223456666655544456889999999987544
No 121
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=39.25 E-value=44 Score=25.38 Aligned_cols=41 Identities=7% Similarity=-0.040 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHH-HHHh
Q psy9123 34 NITCDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECL-SSHL 75 (118)
Q Consensus 34 ~~~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L-~~l~ 75 (118)
++..+.+.+.|.+.++++|...| +.+.|++..-+|.. .+..
T Consensus 3 ~~~a~~i~~~i~~~i~~~~~~~i-~LsgGstp~~~y~~L~~~~ 44 (199)
T PF01182_consen 3 QAVAEAIAEAIEEAIAERGRAVI-ALSGGSTPKPLYQELAKLH 44 (199)
T ss_dssp HHHHHHHHHHHHHHHHHCSSEEE-EE--SCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCEEE-EEcCCHHHHHHHHHHhhhc
Confidence 45667888899999988888888 88888866655543 4434
No 122
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=38.84 E-value=34 Score=25.82 Aligned_cols=35 Identities=6% Similarity=0.172 Sum_probs=24.9
Q ss_pred ceeEEEEccccchhhHHHHHHHHHHHHhcCCeEEEcCCc
Q psy9123 22 SKIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLVPCYP 60 (118)
Q Consensus 22 ~~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLIPaFa 60 (118)
.+||+++...-.. .+.+.+.+.++.||.++||...
T Consensus 141 ~~fD~Ii~~~~~~----~~~~~l~~~L~~gG~lvi~~~~ 175 (205)
T PRK13944 141 APFDAIIVTAAAS----TIPSALVRQLKDGGVLVIPVEE 175 (205)
T ss_pred CCccEEEEccCcc----hhhHHHHHhcCcCcEEEEEEcC
Confidence 4799887664332 3445566789999999999753
No 123
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=38.35 E-value=87 Score=24.24 Aligned_cols=58 Identities=7% Similarity=0.095 Sum_probs=34.0
Q ss_pred eeEEEEcc----ccchhhHHHHHHHHHHHHhcCCeEEEcC---CchHHHHHHHHHHH-HHhhcCCC
Q psy9123 23 KIAVLLHS----DLNNITCDEKWMRDIKNQNESGSVLVPC---YPSGVIYDLFECLS-SHLDNSSL 80 (118)
Q Consensus 23 ~~~~~~~~----~~~~~~~~eL~~~I~~Tl~~GG~VLIPa---FavGRtqELL~~L~-~l~~~~~L 80 (118)
++|+++.. -+..+...++.+.+.+.++.||.+++-- +.-.+..++++.++ .++..++.
T Consensus 125 ~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~ 190 (247)
T PRK15451 125 NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGY 190 (247)
T ss_pred CCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCC
Confidence 46765543 1233345678899999999999998842 22333455444443 33334444
No 124
>PF13245 AAA_19: Part of AAA domain
Probab=38.30 E-value=1.1e+02 Score=19.85 Aligned_cols=60 Identities=10% Similarity=-0.007 Sum_probs=42.6
Q ss_pred HHHHHHhcCCeEE-EcCCchHHHHHHHHHHHHHhhcCCCCCCCEEEeChhHHHHHHHHHHH
Q psy9123 43 RDIKNQNESGSVL-VPCYPSGVIYDLFECLSSHLDNSSLTQIPMFFISPVADISLAYSNIL 102 (118)
Q Consensus 43 ~I~~Tl~~GG~VL-IPaFavGRtqELL~~L~~l~~~~~Lp~iPIyldSPmA~~al~~~~~~ 102 (118)
+|.+++..++.++ .-.-=.|.|+-++..+..++.+...+.-+|.+.+|.-..+-++.+..
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 4566777444444 45556899999999999998653333567999999888886666655
No 125
>COG4865 Glutamate mutase epsilon subunit [Amino acid transport and metabolism]
Probab=38.06 E-value=94 Score=27.53 Aligned_cols=69 Identities=13% Similarity=-0.028 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHHhhcCCCCCCCEEEeChhHHHHHHHHHHHHhhhhHH
Q psy9123 38 DEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSHLDNSSLTQIPMFFISPVADISLAYSNILAEWNTKV 109 (118)
Q Consensus 38 ~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l~~~~~Lp~iPIyldSPmA~~al~~~~~~~Ewl~~~ 109 (118)
..|...+.++.+.|-.+-=|---+-|.-|+++.|..+.+.|+-.=+|+.+||..-.+. |+.-.+-+..+
T Consensus 46 KrF~~~lE~a~~~~k~l~Qpragv~lLdehielL~tl~eeGqADlLp~tIDSyTR~N~---Ye~AavgL~~S 114 (485)
T COG4865 46 KRFSLALEKADKEGKTLSQPRAGVALLDEHIELLKTLQEEGQADLLPSTIDSYTRLNR---YEEAAVGLKKS 114 (485)
T ss_pred hhHHHHHHhhhhcCceecccccCcchHHHHHHHHHHHHHhccccccchhhhhhhhhhh---HHHHHHHHHHh
Confidence 5678888888888777777888899999999999999999998778999999988777 44444444443
No 126
>PF06819 Arc_PepC: Archaeal Peptidase A24 C-terminal Domain; InterPro: IPR009639 This region is of unknown function found at the C terminus of some archael proteins that have multiple transmembrane domains and are predicted to be aspartic peptidases belonging to the MEROPS peptidase subfamily A24A (type 4 prepilin peptidase 1.
Probab=37.91 E-value=28 Score=25.35 Aligned_cols=49 Identities=8% Similarity=0.102 Sum_probs=36.7
Q ss_pred hhhHHHHHHHHHHHH-hc-CCeEEEcCCchHHHHHHHHHHHHHhhcCCCCC
Q psy9123 34 NITCDEKWMRDIKNQ-NE-SGSVLVPCYPSGVIYDLFECLSSHLDNSSLTQ 82 (118)
Q Consensus 34 ~~~~~eL~~~I~~Tl-~~-GG~VLIPaFavGRtqELL~~L~~l~~~~~Lp~ 82 (118)
.+..+++...+..-- +. .|.++|-+.+-|-+.|=++.|.++..+|++++
T Consensus 56 ~~~~~r~k~~l~~~~~~~l~g~~i~~~~~EGLs~E~IE~Lk~Lv~eGKi~n 106 (110)
T PF06819_consen 56 SSFFKRFKFALKTEDGSALTGEKIISTDAEGLSKEDIEKLKKLVEEGKIEN 106 (110)
T ss_pred ccHHHHHHHHHHhcccccccCCeEEeccccCCCHHHHHHHHHHHHcCCCcc
Confidence 344555555555431 11 17889999999999999999999999999974
No 127
>PRK11524 putative methyltransferase; Provisional
Probab=37.80 E-value=74 Score=25.40 Aligned_cols=29 Identities=7% Similarity=-0.064 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhcCCeEEEcCCchHHHHHH
Q psy9123 38 DEKWMRDIKNQNESGSVLVPCYPSGVIYDL 67 (118)
Q Consensus 38 ~eL~~~I~~Tl~~GG~VLIPaFavGRtqEL 67 (118)
+++...+.+.++.||.++|= ....+...+
T Consensus 60 ~~~l~~~~rvLK~~G~i~i~-~~~~~~~~~ 88 (284)
T PRK11524 60 YEWIDECHRVLKKQGTMYIM-NSTENMPFI 88 (284)
T ss_pred HHHHHHHHHHhCCCcEEEEE-cCchhhhHH
Confidence 56777888889999999983 333343333
No 128
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=37.53 E-value=37 Score=25.16 Aligned_cols=37 Identities=5% Similarity=-0.047 Sum_probs=26.2
Q ss_pred ceeEEEEccccch--hhHHHHHHHHHHHHhcCCeEEEcC
Q psy9123 22 SKIAVLLHSDLNN--ITCDEKWMRDIKNQNESGSVLVPC 58 (118)
Q Consensus 22 ~~~~~~~~~~~~~--~~~~eL~~~I~~Tl~~GG~VLIPa 58 (118)
.+||+++...... ...+++.+.+.+.++.||.+++-.
T Consensus 111 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 111 KSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred CCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 5799988764333 223567778888899999988743
No 129
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=37.52 E-value=30 Score=25.79 Aligned_cols=37 Identities=3% Similarity=0.080 Sum_probs=26.5
Q ss_pred ceeEEEEccccch--hhHHHHHHHHHHHHhcCCeEEEcC
Q psy9123 22 SKIAVLLHSDLNN--ITCDEKWMRDIKNQNESGSVLVPC 58 (118)
Q Consensus 22 ~~~~~~~~~~~~~--~~~~eL~~~I~~Tl~~GG~VLIPa 58 (118)
.+||+++...... ....++.+.+.+.++.||.+++-.
T Consensus 66 ~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 66 DTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred CCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 3699988654322 124577888899999999999743
No 130
>PF13036 DUF3897: Protein of unknown function (DUF3897)
Probab=37.30 E-value=1.5e+02 Score=21.98 Aligned_cols=53 Identities=15% Similarity=0.033 Sum_probs=34.8
Q ss_pred CCCceeEEEEccccchhh-----HHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHH
Q psy9123 19 NGQSKIAVLLHSDLNNIT-----CDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSH 74 (118)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~-----~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l 74 (118)
.+|.+ .|+++++..++| .+.|.+.|...+.+.|++-+ -..+...++...+...
T Consensus 58 ~~g~~-~vv~v~~v~N~T~~~idt~~lt~~I~~~L~~sgk~~~--v~~~~~~~~~~e~~~~ 115 (180)
T PF13036_consen 58 KPGVR-PVVAVSPVKNDTSEHIDTEQLTNKIRTALLNSGKFRF--VSGGQRDAMRQELRLQ 115 (180)
T ss_pred cCCCc-eEEEEeccccCCCCccCHHHHHHHHHHHHHHCCCEEE--EchHHHHHHHHHHhhc
Confidence 33444 888888888887 46778888888877787776 3333444455555433
No 131
>PF11305 DUF3107: Protein of unknown function (DUF3107); InterPro: IPR021456 Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=37.10 E-value=39 Score=22.91 Aligned_cols=34 Identities=24% Similarity=0.272 Sum_probs=22.1
Q ss_pred EEEccccchhhHHHHHHHHHHHHhcC-----------CeEEEcCCchH
Q psy9123 26 VLLHSDLNNITCDEKWMRDIKNQNES-----------GSVLVPCYPSG 62 (118)
Q Consensus 26 ~~~~~~~~~~~~~eL~~~I~~Tl~~G-----------G~VLIPaFavG 62 (118)
+.+-+|+ +.+++.+.|.+++..| -.+|||+.+++
T Consensus 14 l~ies~~---s~dev~~~v~~Al~~~~~~l~LtD~kGr~~lVp~~~ia 58 (74)
T PF11305_consen 14 LVIESDQ---SADEVEAAVTDALADGSGVLTLTDEKGRRVLVPAASIA 58 (74)
T ss_pred EEEecCC---CHHHHHHHHHHHHhCCCceEEEEeCCCCEEEEECCcEE
Confidence 3455555 4457777888887665 56788877654
No 132
>PRK01581 speE spermidine synthase; Validated
Probab=37.00 E-value=1.1e+02 Score=26.51 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=26.5
Q ss_pred ceeEEEEccccchhh--------HHHHHHHHHHHHhcCCeEEEcC
Q psy9123 22 SKIAVLLHSDLNNIT--------CDEKWMRDIKNQNESGSVLVPC 58 (118)
Q Consensus 22 ~~~~~~~~~~~~~~~--------~~eL~~~I~~Tl~~GG~VLIPa 58 (118)
.+|||++. |.+... ..++.+.+.+.++.||.+++=+
T Consensus 225 ~~YDVIIv-Dl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 225 SLYDVIII-DFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred CCccEEEE-cCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 47999985 443321 2678899999999999987743
No 133
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=36.95 E-value=37 Score=30.03 Aligned_cols=40 Identities=8% Similarity=-0.007 Sum_probs=29.9
Q ss_pred ceeEEEEccccchhhHHHHHHHHHHHHhcCCeEEEcCCch
Q psy9123 22 SKIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLVPCYPS 61 (118)
Q Consensus 22 ~~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLIPaFav 61 (118)
+++|+|+++.-..+--++=...|.+-+.+||++++=..|.
T Consensus 233 ~d~d~LvI~~P~~~ls~~e~~~Ldqfl~~GG~ll~~~dp~ 272 (552)
T TIGR03521 233 KKFDLIVIAKPTEAFSEREKYILDQYIMNGGKALFLVDAV 272 (552)
T ss_pred cCcCEEEEeCCCccCCHHHHHHHHHHHHcCCeEEEEecCc
Confidence 3789999887663433444567888899999999977764
No 134
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=36.60 E-value=1.3e+02 Score=22.20 Aligned_cols=47 Identities=6% Similarity=0.039 Sum_probs=22.8
Q ss_pred ceeEEEEccccchhhHHHHHHHHHHHH--hcCCeEEEcCCchHHHHHHHHHH
Q psy9123 22 SKIAVLLHSDLNNITCDEKWMRDIKNQ--NESGSVLVPCYPSGVIYDLFECL 71 (118)
Q Consensus 22 ~~~~~~~~~~~~~~~~~eL~~~I~~Tl--~~GG~VLIPaFavGRtqELL~~L 71 (118)
.++++++.... .+. ++..+.+.+.+ +-.|-++.|..+ .+.-+++..+
T Consensus 29 ~~~~~~~~~~~-~~~-~~~~~~i~~l~~~~vdgiii~~~~~-~~~~~~~~~l 77 (272)
T cd06301 29 GGVELQFEDAK-NDV-ATQLSQVENFIAQGVDAIIVVPVDT-AATAPIVKAA 77 (272)
T ss_pred CCcEEEEeCCC-CCH-HHHHHHHHHHHHcCCCEEEEecCch-hhhHHHHHHH
Confidence 46888876442 222 22233444433 345666667653 3344444443
No 135
>PRK13938 phosphoheptose isomerase; Provisional
Probab=36.53 E-value=1.8e+02 Score=22.44 Aligned_cols=70 Identities=7% Similarity=-0.063 Sum_probs=41.8
Q ss_pred HHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHHhhcCC---------------CCCCCEEEeChhHHHHHHHHHHHHhh
Q psy9123 41 WMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSHLDNSS---------------LTQIPMFFISPVADISLAYSNILAEW 105 (118)
Q Consensus 41 ~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l~~~~~---------------Lp~iPIyldSPmA~~al~~~~~~~Ew 105 (118)
...+. ..-+.|.++|=....|++.++++.+....+.|- +.++.+++.+.-...+-+.--.....
T Consensus 104 ~~~~~-~~~~~~DllI~iS~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~s~La~~aD~~l~v~~~e~~~v~e~h~~~~h~ 182 (196)
T PRK13938 104 ARALE-GSARPGDTLFAISTSGNSMSVLRAAKTARELGVTVVAMTGESGGQLAEFADFLINVPSRDTGRIQESHIVFIHA 182 (196)
T ss_pred HHHHH-hcCCCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhhCCEEEEeCCCchhhHHHHHHHHHHH
Confidence 33334 555666677777777999999999998877762 12344455554444554444444444
Q ss_pred hhHHHH
Q psy9123 106 NTKVEV 111 (118)
Q Consensus 106 l~~~~~ 111 (118)
+++...
T Consensus 183 l~~~v~ 188 (196)
T PRK13938 183 ISEHVE 188 (196)
T ss_pred HHHHHH
Confidence 555443
No 136
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=36.27 E-value=46 Score=25.48 Aligned_cols=35 Identities=11% Similarity=0.082 Sum_probs=26.1
Q ss_pred ceeEEEEccccchh--hHHHHHHHHHHHHhcCCeEEE
Q psy9123 22 SKIAVLLHSDLNNI--TCDEKWMRDIKNQNESGSVLV 56 (118)
Q Consensus 22 ~~~~~~~~~~~~~~--~~~eL~~~I~~Tl~~GG~VLI 56 (118)
.+||+++.+....- ...++...+.+.++.||.+++
T Consensus 92 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~ 128 (258)
T PRK01683 92 QALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAV 128 (258)
T ss_pred CCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEE
Confidence 38999887755421 235677788889999999987
No 137
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=36.18 E-value=23 Score=27.33 Aligned_cols=38 Identities=8% Similarity=0.080 Sum_probs=27.9
Q ss_pred CCCceeEEEEc----cccchhhHHHHHHHHHHHHhcCCeEEE
Q psy9123 19 NGQSKIAVLLH----SDLNNITCDEKWMRDIKNQNESGSVLV 56 (118)
Q Consensus 19 ~~~~~~~~~~~----~~~~~~~~~eL~~~I~~Tl~~GG~VLI 56 (118)
....+||+++. --..+++.+++.+.+.+.++.||-+++
T Consensus 132 ~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~l 173 (196)
T PF01739_consen 132 PPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFL 173 (196)
T ss_dssp -----EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred cccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 34569999954 456788889999999999999999987
No 138
>PF01250 Ribosomal_S6: Ribosomal protein S6; InterPro: IPR000529 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S6 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S6 is known to bind together with S18 to 16S ribosomal RNA. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities, groups bacterial, red algal chloroplast and cyanelle S6 ribosomal proteins.; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 3BBN_F 3R3T_B 3F1E_F 2QNH_g 2OW8_g 3PYQ_F 3PYS_F 3PYU_F 3MR8_F 3PYN_F ....
Probab=36.11 E-value=90 Score=20.62 Aligned_cols=39 Identities=21% Similarity=0.168 Sum_probs=28.8
Q ss_pred EEEEccccchhhHHHHHHHHHHHHhcCCeEEEcCCchHH
Q psy9123 25 AVLLHSDLNNITCDEKWMRDIKNQNESGSVLVPCYPSGV 63 (118)
Q Consensus 25 ~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLIPaFavGR 63 (118)
-+++..++.++..+++.+-+.+.+.+.|-+++=....|+
T Consensus 6 ~~il~~~~~~~~~~~~~~~~~~~i~~~gg~v~~~~~~G~ 44 (92)
T PF01250_consen 6 MFILRPDLSEEEIKKLIERVKKIIEKNGGVVRSVENWGK 44 (92)
T ss_dssp EEEE-TTSCHHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEee
Confidence 467777888889999999999998777776665555443
No 139
>PRK00453 rpsF 30S ribosomal protein S6; Reviewed
Probab=35.95 E-value=64 Score=22.26 Aligned_cols=49 Identities=16% Similarity=0.056 Sum_probs=38.5
Q ss_pred EEEEccccchhhHHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHH
Q psy9123 25 AVLLHSDLNNITCDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSH 74 (118)
Q Consensus 25 ~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l 74 (118)
-+++-+++.++..+++.+-+.+.+.+.|-.++=....| ...|=|.+..+
T Consensus 7 ~~il~~~~~~~~~~~~~~~~~~~i~~~gg~i~~~~~~G-~r~LAY~I~k~ 55 (108)
T PRK00453 7 VFILRPDLSEEQVKALVERFKGVITENGGTIHKVEDWG-RRRLAYPINKL 55 (108)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEeccc-ccccceEcCCC
Confidence 46778888899999999999999887666667788888 45566777664
No 140
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=35.60 E-value=28 Score=23.93 Aligned_cols=47 Identities=9% Similarity=0.077 Sum_probs=23.4
Q ss_pred ceeEEEEccccchhhHHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHH
Q psy9123 22 SKIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFE 69 (118)
Q Consensus 22 ~~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~ 69 (118)
.-+|+++.-+-..-.-+. ..++..|++.||-+++-+-+...-.+...
T Consensus 10 ~e~~~~i~d~~~g~~pna-l~a~~gtv~gGGllill~p~~~~w~~~~d 56 (92)
T PF08351_consen 10 QEFDLLIFDAFEGFDPNA-LAALAGTVRGGGLLILLLPPWESWPQLPD 56 (92)
T ss_dssp --BSSEEEE-SS---HHH-HHHHHTTB-TT-EEEEEES-GGGTTTS-B
T ss_pred CccCEEEEEccCCCCHHH-HHHHhcceecCeEEEEEcCCHHHhhhcch
Confidence 345665554433333344 44677799999999998777655444433
No 141
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=35.36 E-value=36 Score=26.68 Aligned_cols=63 Identities=21% Similarity=0.114 Sum_probs=38.3
Q ss_pred EEEccccch-------hhHHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHHhhcCCCCCCCEEEeChhHHHH
Q psy9123 26 VLLHSDLNN-------ITCDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSHLDNSSLTQIPMFFISPVADIS 95 (118)
Q Consensus 26 ~~~~~~~~~-------~~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l~~~~~Lp~iPIyldSPmA~~a 95 (118)
.|++||+-. ...++|.+.+. ...+++..+|| +.||..+...-+. .+..+| .|=|+++..+.++
T Consensus 3 ~ll~sDlD~Tl~~~~~~~~~~l~~~l~-~~~~~~~~~v~--~TGRs~~~~~~~~---~~~~l~-~Pd~~I~svGt~I 72 (247)
T PF05116_consen 3 RLLASDLDGTLIDGDDEALARLEELLE-QQARPEILFVY--VTGRSLESVLRLL---REYNLP-QPDYIITSVGTEI 72 (247)
T ss_dssp EEEEEETBTTTBHCHHHHHHHHHHHHH-HHHCCGEEEEE--E-SS-HHHHHHHH---HHCT-E-E-SEEEETTTTEE
T ss_pred EEEEEECCCCCcCCCHHHHHHHHHHHH-HhhCCCceEEE--ECCCCHHHHHHHH---HhCCCC-CCCEEEecCCeEE
Confidence 466666533 33566666666 56688888886 5799888877664 334465 5767777766554
No 142
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=35.35 E-value=72 Score=23.20 Aligned_cols=36 Identities=3% Similarity=-0.073 Sum_probs=25.2
Q ss_pred ceeEEEEccccc--hhhHHHHHHHHHHHHhcCCeEEEc
Q psy9123 22 SKIAVLLHSDLN--NITCDEKWMRDIKNQNESGSVLVP 57 (118)
Q Consensus 22 ~~~~~~~~~~~~--~~~~~eL~~~I~~Tl~~GG~VLIP 57 (118)
.+||+++.+... .....++++.+.+.++.||.+++-
T Consensus 105 ~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 142 (223)
T TIGR01934 105 NSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVIL 142 (223)
T ss_pred CcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEE
Confidence 479987654321 223456778888899999999873
No 143
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=35.34 E-value=1.7e+02 Score=26.18 Aligned_cols=74 Identities=9% Similarity=-0.003 Sum_probs=52.1
Q ss_pred cchhhHHHHHHHHHHHHhcCCeEEEcCCchHHHH---HHHHHHHHHhhcCCCCCCCEEEeChhHHHHHHHHHHHHhhh
Q psy9123 32 LNNITCDEKWMRDIKNQNESGSVLVPCYPSGVIY---DLFECLSSHLDNSSLTQIPMFFISPVADISLAYSNILAEWN 106 (118)
Q Consensus 32 ~~~~~~~eL~~~I~~Tl~~GG~VLIPaFavGRtq---ELL~~L~~l~~~~~Lp~iPIyldSPmA~~al~~~~~~~Ewl 106 (118)
-..++++--.+.+.++-+.+ .=+|=++..||.+ +||..+.+..+.-+-..+=..+|+=++..+...++.|-|++
T Consensus 163 ~~~~Pv~Iak~al~~ak~~~-~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l 239 (451)
T COG0541 163 TEKDPVEIAKAALEKAKEEG-YDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEAL 239 (451)
T ss_pred CCCCHHHHHHHHHHHHHHcC-CCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhc
Confidence 34456555555555554444 4444478999975 78888877766544335667899999999999999999885
No 144
>TIGR01201 HU_rel DNA-binding protein, histone-like, putative. This model describes a set of proteins related to but longer than DNA-binding protein HU. Its distinctive domain architecture compared to HU and related histone-like DNA-binding proteins justifies the designation as superfamily. Members include, so far, one from Bacteroides fragilis, a gut bacterium, and ten from Porphyromonas gingivalis, an oral anaerobe.
Probab=35.28 E-value=45 Score=24.54 Aligned_cols=22 Identities=27% Similarity=0.231 Sum_probs=11.1
Q ss_pred CCchHHHHHHHHHHHHHhhcCC
Q psy9123 58 CYPSGVIYDLFECLSSHLDNSS 79 (118)
Q Consensus 58 aFavGRtqELL~~L~~l~~~~~ 79 (118)
...-+.+.+|+..+.+.+.+|+
T Consensus 49 ~dv~~vl~~l~~~i~~~L~~G~ 70 (145)
T TIGR01201 49 GDVKGIIDRLAYVLRRELANGK 70 (145)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC
Confidence 3444555555555555555543
No 145
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=34.99 E-value=2e+02 Score=22.08 Aligned_cols=79 Identities=14% Similarity=0.079 Sum_probs=47.2
Q ss_pred eeEEEEccccch-----hhHHHHHHHHHHHHhcCCeEEEcCC-chHHHHHHHHHHHHHhhcCCCCCCCEEEeChhHHHHH
Q psy9123 23 KIAVLLHSDLNN-----ITCDEKWMRDIKNQNESGSVLVPCY-PSGVIYDLFECLSSHLDNSSLTQIPMFFISPVADISL 96 (118)
Q Consensus 23 ~~~~~~~~~~~~-----~~~~eL~~~I~~Tl~~GG~VLIPaF-avGRtqELL~~L~~l~~~~~Lp~iPIyldSPmA~~al 96 (118)
..|+|+.-|... .+.++|.+++++..++|+.+||-+. +-.-...+..-|..-+..| +-+-+..|--..-.
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~G----l~~~l~~pd~~~r~ 172 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWG----LVVELQPPDDEDRR 172 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCS----EEEEE----HHHHH
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhc----chhhcCCCCHHHHH
Confidence 468998887643 4578999999999999999998773 3233333444444444433 22455666555565
Q ss_pred HHHHHHHhh
Q psy9123 97 AYSNILAEW 105 (118)
Q Consensus 97 ~~~~~~~Ew 105 (118)
++.+...++
T Consensus 173 ~il~~~a~~ 181 (219)
T PF00308_consen 173 RILQKKAKE 181 (219)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 556555554
No 146
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=34.84 E-value=82 Score=26.98 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=34.1
Q ss_pred CCceeEEEEcccc----chhhHHHHHHHHHHHHhcCCeEEEcCCchH
Q psy9123 20 GQSKIAVLLHSDL----NNITCDEKWMRDIKNQNESGSVLVPCYPSG 62 (118)
Q Consensus 20 ~~~~~~~~~~~~~----~~~~~~eL~~~I~~Tl~~GG~VLIPaFavG 62 (118)
+...+|..+.+|- .++..+++++.|.++.+.||.|+.=+++.-
T Consensus 292 ~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 292 PPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVP 338 (380)
T ss_pred CCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence 4456888888885 456788899999999999999998666543
No 147
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=34.33 E-value=70 Score=23.92 Aligned_cols=39 Identities=5% Similarity=-0.158 Sum_probs=25.9
Q ss_pred CceeEEEEccccch--hhHHHHHHHHHHHHhcCCeEEEcCC
Q psy9123 21 QSKIAVLLHSDLNN--ITCDEKWMRDIKNQNESGSVLVPCY 59 (118)
Q Consensus 21 ~~~~~~~~~~~~~~--~~~~eL~~~I~~Tl~~GG~VLIPaF 59 (118)
..+||+++...... ....++.+.+.+.++.||.+++-.+
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 112 DNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred CCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 35799877543211 1235667778889999999988543
No 148
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=33.96 E-value=50 Score=24.79 Aligned_cols=37 Identities=11% Similarity=-0.007 Sum_probs=26.1
Q ss_pred ceeEEEEccccchh--hHHHHHHHHHHHHhcCCeEEEcC
Q psy9123 22 SKIAVLLHSDLNNI--TCDEKWMRDIKNQNESGSVLVPC 58 (118)
Q Consensus 22 ~~~~~~~~~~~~~~--~~~eL~~~I~~Tl~~GG~VLIPa 58 (118)
.+||+++.+..... ...++.+.+.+.++.||.+++=.
T Consensus 113 ~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 113 GQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred CCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEe
Confidence 58999977543321 23567778888899999988643
No 149
>TIGR00166 S6 ribosomal protein S6. MRP17 protein is a component of the small ribosomal subunit in mitochondria, and is shown here to be an ortholog of S6.
Probab=33.04 E-value=68 Score=21.52 Aligned_cols=61 Identities=18% Similarity=0.123 Sum_probs=39.6
Q ss_pred EEEEccccchhhHHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHHhhcCCCCCCCEEEeCh
Q psy9123 25 AVLLHSDLNNITCDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSHLDNSSLTQIPMFFISP 90 (118)
Q Consensus 25 ~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l~~~~~Lp~iPIyldSP 90 (118)
-+++..++.++ .+++.+-+.+.+.+.|-.++=...-|+ ..|=|-+.++. +|. -+-+.|+++
T Consensus 6 ~~Il~p~~~~~-~~~~~~~~~~~i~~~gg~i~~~~~~G~-r~LaY~I~k~~-~G~--Y~~~~f~~~ 66 (93)
T TIGR00166 6 IFLVRPTLSEE-VKGQIERYKKVITLNGAEIVRSEDWGK-RRLAYPIKKQL-RAH--YVLMNFSGE 66 (93)
T ss_pred EEEECCCCcHH-HHHHHHHHHHHHHhCCCEEEEEEeecc-eecceEcCCCc-eEE--EEEEEEEeC
Confidence 35777888888 888888899888777777777777774 44556665432 221 144555544
No 150
>KOG1270|consensus
Probab=32.89 E-value=40 Score=28.32 Aligned_cols=37 Identities=11% Similarity=0.051 Sum_probs=32.1
Q ss_pred ceeEEEEccccchhh--HHHHHHHHHHHHhcCCeEEEcC
Q psy9123 22 SKIAVLLHSDLNNIT--CDEKWMRDIKNQNESGSVLVPC 58 (118)
Q Consensus 22 ~~~~~~~~~~~~~~~--~~eL~~~I~~Tl~~GG~VLIPa 58 (118)
-|||..++++-.+-- .++++...-+-++.||.+.|-+
T Consensus 157 ~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 157 GKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITT 195 (282)
T ss_pred cccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeee
Confidence 459999999988876 6789999999999999999854
No 151
>PRK13938 phosphoheptose isomerase; Provisional
Probab=32.59 E-value=2.3e+02 Score=21.79 Aligned_cols=57 Identities=9% Similarity=-0.060 Sum_probs=35.6
Q ss_pred cchhhHHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHHhhc---CCCCCCCEEEeCh
Q psy9123 32 LNNITCDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSHLDN---SSLTQIPMFFISP 90 (118)
Q Consensus 32 ~~~~~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l~~~---~~Lp~iPIyldSP 90 (118)
...+..+++.+.+.+++++||+|++ +-+|+---+-..+..-+.. -..|++|+...+.
T Consensus 26 ~~~~~~~~~a~~~~~~l~~g~rI~i--~G~G~S~~~A~~fa~~L~~~~~~~r~~lg~~~l~~ 85 (196)
T PRK13938 26 VLLEAARAIGDRLIAGYRAGARVFM--CGNGGSAADAQHFAAELTGHLIFDRPPLGAEALHA 85 (196)
T ss_pred hhHHHHHHHHHHHHHHHHCCCEEEE--EeCcHHHHHHHHHHHHcCCCccCCcCccceEEEeC
Confidence 3456678888999999999999997 5566655555555433321 1234566654433
No 152
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=32.30 E-value=2.4e+02 Score=21.79 Aligned_cols=77 Identities=10% Similarity=0.076 Sum_probs=44.9
Q ss_pred hhhHHHHHHHHHHHHhcCCeEEEcCCchHH----HHHHHHHHHHHhhcCCCCCCCEEEeChhHHHHHHHHHH--HHhhhh
Q psy9123 34 NITCDEKWMRDIKNQNESGSVLVPCYPSGV----IYDLFECLSSHLDNSSLTQIPMFFISPVADISLAYSNI--LAEWNT 107 (118)
Q Consensus 34 ~~~~~eL~~~I~~Tl~~GG~VLIPaFavGR----tqELL~~L~~l~~~~~Lp~iPIyldSPmA~~al~~~~~--~~Ewl~ 107 (118)
.+..++..+.+.+.+++||+|++= -+|+ ++.+-..|..-++..+ |.+|.+..+.-..-.+++++. |.+++.
T Consensus 24 ~~~i~~a~~~l~~~l~~~~rI~~~--G~GgSa~~A~~~a~~l~~~~~~~r-~gl~a~~l~~d~~~~ta~and~~~~~~f~ 100 (196)
T PRK10886 24 PDAISRAAMTLVQSLLNGNKILCC--GNGTSAANAQHFAASMINRFETER-PSLPAIALNTDNVVLTAIANDRLHDEVYA 100 (196)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEE--ECcHHHHHHHHHHHHHhccccccC-CCcceEEecCcHHHHHHHhccccHHHHHH
Confidence 366888899999999999999974 5565 3444443321122223 358888554444455554444 344444
Q ss_pred HHHHHh
Q psy9123 108 KVEVQI 113 (118)
Q Consensus 108 ~~~~~~ 113 (118)
...+..
T Consensus 101 ~ql~~~ 106 (196)
T PRK10886 101 KQVRAL 106 (196)
T ss_pred HHHHHc
Confidence 444433
No 153
>PF14894 Lsm_C: Lsm C-terminal; PDB: 1M5Q_1.
Probab=32.11 E-value=40 Score=22.46 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=13.3
Q ss_pred EEeChhHHHHHHHHHHHHhhhhHHH
Q psy9123 86 FFISPVADISLAYSNILAEWNTKVE 110 (118)
Q Consensus 86 yldSPmA~~al~~~~~~~Ewl~~~~ 110 (118)
-=..|||.++ +++|-||+...+
T Consensus 42 EGsGPlAerv---~~ly~eyi~~kk 63 (64)
T PF14894_consen 42 EGSGPLAERV---YDLYNEYIEKKK 63 (64)
T ss_dssp E--SHHHHHH---HHHHHHHHH---
T ss_pred ccCChHHHHH---HHHHHHHHHhcc
Confidence 3346999999 777777776543
No 154
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=32.04 E-value=1.5e+02 Score=19.56 Aligned_cols=52 Identities=23% Similarity=0.239 Sum_probs=31.8
Q ss_pred hhhHHHHHHHHHHHHhcCCeEEEcCCchHHH--HHHHHHHHHHhhcCCCCCCCEEEe
Q psy9123 34 NITCDEKWMRDIKNQNESGSVLVPCYPSGVI--YDLFECLSSHLDNSSLTQIPMFFI 88 (118)
Q Consensus 34 ~~~~~eL~~~I~~Tl~~GG~VLIPaFavGRt--qELL~~L~~l~~~~~Lp~iPIyld 88 (118)
..+.+++.+.+.+.+++.+.++|=.+-+.+. .+.++.|.+++++. .++|.+.
T Consensus 69 ~~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~---~~~vvl~ 122 (131)
T PF13401_consen 69 RQTSDELRSLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLNES---NIKVVLV 122 (131)
T ss_dssp TS-HHHHHHHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTCSC---BEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHhCC---CCeEEEE
Confidence 3455666777777777777766666666654 56666666666532 3445443
No 155
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=31.80 E-value=41 Score=25.62 Aligned_cols=33 Identities=18% Similarity=0.272 Sum_probs=26.4
Q ss_pred eEEEEcc----ccchhhHHHHHHHHHHHHhcC--CeEEE
Q psy9123 24 IAVLLHS----DLNNITCDEKWMRDIKNQNES--GSVLV 56 (118)
Q Consensus 24 ~~~~~~~----~~~~~~~~eL~~~I~~Tl~~G--G~VLI 56 (118)
.||.+.+ +..++.+.++.+-+.++++.| |.|||
T Consensus 159 ~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI 197 (241)
T PF00891_consen 159 ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLI 197 (241)
T ss_dssp ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEE
T ss_pred ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEE
Confidence 6777655 556778888999999999988 99987
No 156
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=31.77 E-value=48 Score=26.42 Aligned_cols=39 Identities=8% Similarity=0.095 Sum_probs=29.4
Q ss_pred CceeEEEEccccc-----hhhHHHHHHHHHHHHhcCCeEEEcCC
Q psy9123 21 QSKIAVLLHSDLN-----NITCDEKWMRDIKNQNESGSVLVPCY 59 (118)
Q Consensus 21 ~~~~~~~~~~~~~-----~~~~~eL~~~I~~Tl~~GG~VLIPaF 59 (118)
..+||+.|.|... .+..+.+.+.+.+.++.||.+++-.+
T Consensus 104 ~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 104 EGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 4589999999753 24566777788889999999999665
No 157
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=31.71 E-value=1.8e+02 Score=20.93 Aligned_cols=44 Identities=16% Similarity=0.058 Sum_probs=24.0
Q ss_pred HHHHhcCCeEEEcCCchHHHHHHHHHHHHHhhcCCCCCCCEEEe
Q psy9123 45 IKNQNESGSVLVPCYPSGVIYDLFECLSSHLDNSSLTQIPMFFI 88 (118)
Q Consensus 45 ~~Tl~~GG~VLIPaFavGRtqELL~~L~~l~~~~~Lp~iPIyld 88 (118)
..+.+.+..++.=|...+=..+.+..+.+.+++.+.++++|++=
T Consensus 47 ~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivG 90 (132)
T TIGR00640 47 RQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVG 90 (132)
T ss_pred HHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 33445566666656666655555555555555544445555554
No 158
>cd00591 HU_IHF Integration host factor (IHF) and HU are small heterodimeric members of the DNABII protein family that bind and bend DNA, functioning as architectural factors in many cellular processes including transcription, site-specific recombination, and higher-order nucleoprotein complex assembly. The dimer subunits associate to form a compact globular core from which two beta ribbon arms (one from each subunit) protrude. The beta arms track and bind the DNA minor groove. Despite sequence and structural similarity, IHF and HU can be distinguished by their different DNA substrate preferences.
Probab=31.47 E-value=85 Score=20.18 Aligned_cols=26 Identities=12% Similarity=0.067 Sum_probs=22.1
Q ss_pred hhhHHHHHHHHHHHHhcCCeEEEcCC
Q psy9123 34 NITCDEKWMRDIKNQNESGSVLVPCY 59 (118)
Q Consensus 34 ~~~~~eL~~~I~~Tl~~GG~VLIPaF 59 (118)
...++.|.+.+.+.+..|+.|-||=|
T Consensus 21 ~~vl~~~~~~i~~~L~~g~~V~l~~~ 46 (87)
T cd00591 21 EAAVDAFLDVITEALAKGEKVELPGF 46 (87)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEeCC
Confidence 34578899999999999999999855
No 159
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=31.40 E-value=65 Score=26.50 Aligned_cols=38 Identities=8% Similarity=0.120 Sum_probs=30.2
Q ss_pred CceeEEEEccc----cchhhHHHHHHHHHHHHhcCCeEEEcC
Q psy9123 21 QSKIAVLLHSD----LNNITCDEKWMRDIKNQNESGSVLVPC 58 (118)
Q Consensus 21 ~~~~~~~~~~~----~~~~~~~eL~~~I~~Tl~~GG~VLIPa 58 (118)
..+||+++.-. ...+..+++.+.+.++++.||.+++-.
T Consensus 221 ~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 221 PGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred CCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 36899988743 456678899999999999999887643
No 160
>COG2025 FixB Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=31.36 E-value=1.6e+02 Score=24.91 Aligned_cols=65 Identities=22% Similarity=0.221 Sum_probs=45.2
Q ss_pred HhhcccCCCceeEEEEccccchhhHHHHHHHHHHHHhcC--CeEEEcCCchHHHHHHHHHHHHHhhcCC
Q psy9123 13 ASTASSNGQSKIAVLLHSDLNNITCDEKWMRDIKNQNES--GSVLVPCYPSGVIYDLFECLSSHLDNSS 79 (118)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~I~~Tl~~G--G~VLIPaFavGRtqELL~~L~~l~~~~~ 79 (118)
+..+...|-.|..++=...+..-..+...+.+...+++. ..+|+|+...|| ||.-.+...+.-+-
T Consensus 41 ~~~~~~~Gad~v~~~~~~~~~~~~~e~~~~~l~~l~~~~~p~~il~~aT~~Gk--~la~rvAa~l~~~~ 107 (313)
T COG2025 41 AAAAKAYGADKVLVAEGPELANYLPEPYADALVDLAKKYKPDVVLLPATTNGK--ELAPRVAARLDVGL 107 (313)
T ss_pred HHHHhhcCCCEEEEEcccchhccchhHHHHHHHHHHHhcCCCEEEEcCCCchH--HHHHHHHHHcCCCc
Confidence 344555666665554444444444566888888888777 899999999999 88887776655443
No 161
>PRK04457 spermidine synthase; Provisional
Probab=30.54 E-value=1.3e+02 Score=23.94 Aligned_cols=54 Identities=15% Similarity=0.078 Sum_probs=37.0
Q ss_pred ceeEEEEccccchh-------hHHHHHHHHHHHHhcCCeEEEcCC-chHHHHHHHHHHHHHhh
Q psy9123 22 SKIAVLLHSDLNNI-------TCDEKWMRDIKNQNESGSVLVPCY-PSGVIYDLFECLSSHLD 76 (118)
Q Consensus 22 ~~~~~~~~~~~~~~-------~~~eL~~~I~~Tl~~GG~VLIPaF-avGRtqELL~~L~~l~~ 76 (118)
.+||+++. |.... ...++.+.+.+.++.||.++|-.. .-++..+.+..|.+.+.
T Consensus 135 ~~yD~I~~-D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~ 196 (262)
T PRK04457 135 HSTDVILV-DGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFE 196 (262)
T ss_pred CCCCEEEE-eCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcC
Confidence 47999985 22111 236888899999999999998432 22356677777777765
No 162
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=30.50 E-value=81 Score=26.41 Aligned_cols=39 Identities=15% Similarity=0.162 Sum_probs=25.9
Q ss_pred EEEEccccc---hhhHHHHHHHHHHHHhcCCe----EEEcCCchHHH
Q psy9123 25 AVLLHSDLN---NITCDEKWMRDIKNQNESGS----VLVPCYPSGVI 64 (118)
Q Consensus 25 ~~~~~~~~~---~~~~~eL~~~I~~Tl~~GG~----VLIPaFavGRt 64 (118)
||.+..+.. ++..-||+ .+.+++++.|. ++||.|+-.|-
T Consensus 58 dV~ivqs~~~p~nd~l~eLl-l~~~alr~~~a~~i~~ViPYl~YaRQ 103 (332)
T PRK00553 58 DVVIFQSTCSPVNDSLMELL-IAIDALKRGSAKSITAILPYYGYARQ 103 (332)
T ss_pred EEEEEcCCCCCCchHHHHHH-HHHHHHHHcCCCeEEEEeeccccchh
Confidence 676666543 33444555 44557888875 89999998873
No 163
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=30.05 E-value=60 Score=25.84 Aligned_cols=34 Identities=12% Similarity=0.148 Sum_probs=25.6
Q ss_pred eEEEEccc----cchhhHHHHHHHHHHHHhcCCeEEEc
Q psy9123 24 IAVLLHSD----LNNITCDEKWMRDIKNQNESGSVLVP 57 (118)
Q Consensus 24 ~~~~~~~~----~~~~~~~eL~~~I~~Tl~~GG~VLIP 57 (118)
+|+.+.+. .+.+...++.+.+.+.++.||.++|=
T Consensus 216 ~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 216 ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEE
Confidence 57665544 34555678888999999999999885
No 164
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=29.87 E-value=44 Score=23.70 Aligned_cols=42 Identities=14% Similarity=0.200 Sum_probs=30.8
Q ss_pred CCCCchhHHHHhhcccCCCceeEEEEccccchhhHHHHHHHHHHH
Q psy9123 3 QNGDNLDSLIASTASSNGQSKIAVLLHSDLNNITCDEKWMRDIKN 47 (118)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~I~~T 47 (118)
+.|=|++||-++.....|-|++-+.+. | ++.++++..-+++-
T Consensus 31 RRgyNIeSLtvg~te~~~iSRmtivv~-~--~~~i~Qi~kQL~KL 72 (96)
T PRK08178 31 RRAFNVEGILCLPIQDGDKSRIWLLVN-D--DQRLEQMISQIEKL 72 (96)
T ss_pred cCCcCeeeEEEeecCCCCceEEEEEEc-C--chHHHHHHHHHhCC
Confidence 458899999888877888899977654 4 45666666666553
No 165
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=29.82 E-value=46 Score=21.74 Aligned_cols=31 Identities=16% Similarity=0.148 Sum_probs=20.4
Q ss_pred ceeEEEEcccc-----chhhHHHHHHHHHHHHhcCC
Q psy9123 22 SKIAVLLHSDL-----NNITCDEKWMRDIKNQNESG 52 (118)
Q Consensus 22 ~~~~~~~~~~~-----~~~~~~eL~~~I~~Tl~~GG 52 (118)
.+||+++.+.. .++..+.+.+.+.+.+++||
T Consensus 66 ~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 66 GKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 48999888433 33445667777777777776
No 166
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=29.67 E-value=41 Score=22.62 Aligned_cols=41 Identities=15% Similarity=0.063 Sum_probs=30.6
Q ss_pred CCCchhHHHHhhcccCCCceeEEEEccccchhhHHHHHHHHHH
Q psy9123 4 NGDNLDSLIASTASSNGQSKIAVLLHSDLNNITCDEKWMRDIK 46 (118)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~I~~ 46 (118)
.|=|++||-++.....|.|++.+.+..| ++..+++..-+++
T Consensus 26 RgfNI~Sl~vg~te~~~~sriti~~~~~--~~~i~qi~kQL~K 66 (76)
T PRK06737 26 RGYYISSLNLNERDTSGVSEMKLTAVCT--ENEATLLVSQLKK 66 (76)
T ss_pred cCcceEEEEecccCCCCeeEEEEEEECC--HHHHHHHHHHHhC
Confidence 5789999988877788999999987754 3556666555544
No 167
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=29.39 E-value=2.1e+02 Score=21.31 Aligned_cols=36 Identities=6% Similarity=-0.018 Sum_probs=19.4
Q ss_pred eeEEEEccccchhhHHHHHHHHHHHHhcC--CeEEEcCCc
Q psy9123 23 KIAVLLHSDLNNITCDEKWMRDIKNQNES--GSVLVPCYP 60 (118)
Q Consensus 23 ~~~~~~~~~~~~~~~~eL~~~I~~Tl~~G--G~VLIPaFa 60 (118)
+++|++... ..+..++ .+.+...+.++ |-++.|+++
T Consensus 29 g~~v~~~~~-~~~~~~~-~~~i~~~~~~~~Dgiii~~~~~ 66 (282)
T cd06318 29 GYELISTDA-QGDLTKQ-IADVEDLLTRGVNVLIINPVDP 66 (282)
T ss_pred CCEEEEEcC-CCCHHHH-HHHHHHHHHcCCCEEEEecCCc
Confidence 367776543 2232222 34555556666 777767653
No 168
>COG0009 SUA5 Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]
Probab=29.37 E-value=66 Score=25.49 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhcCCeEEEcCCch
Q psy9123 39 EKWMRDIKNQNESGSVLVPCYPS 61 (118)
Q Consensus 39 eL~~~I~~Tl~~GG~VLIPaFav 61 (118)
.......+.++.||.|++|+.+|
T Consensus 14 ~~~~~a~~~l~~G~vVa~PTeTV 36 (211)
T COG0009 14 RAIEKAVEALRKGGVVAYPTDTV 36 (211)
T ss_pred HHHHHHHHHHHcCCEEEEEccch
Confidence 34445556778899999999876
No 169
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=29.27 E-value=84 Score=26.57 Aligned_cols=36 Identities=11% Similarity=0.179 Sum_probs=27.5
Q ss_pred CceeEEEEcccc----chhhHHHHHHHHHHHHhcCCeEEE
Q psy9123 21 QSKIAVLLHSDL----NNITCDEKWMRDIKNQNESGSVLV 56 (118)
Q Consensus 21 ~~~~~~~~~~~~----~~~~~~eL~~~I~~Tl~~GG~VLI 56 (118)
..+||+++...- ..+...++.+.+.+.++.||.+++
T Consensus 101 ~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~ 140 (475)
T PLN02336 101 DGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFF 140 (475)
T ss_pred CCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 357999887652 334457788888999999999987
No 170
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=28.94 E-value=97 Score=21.69 Aligned_cols=49 Identities=20% Similarity=0.279 Sum_probs=32.1
Q ss_pred ceeEEEEcc----------ccchhhHHHHHHHHHHH--HhcCCeEEEcCCchHHHHHHHHHH
Q psy9123 22 SKIAVLLHS----------DLNNITCDEKWMRDIKN--QNESGSVLVPCYPSGVIYDLFECL 71 (118)
Q Consensus 22 ~~~~~~~~~----------~~~~~~~~eL~~~I~~T--l~~GG~VLIPaFavGRtqELL~~L 71 (118)
.-+.|.|.. -|+....++|.+.-.+- ...+|.+.|||.++ ....++..|
T Consensus 39 G~~~VyVG~~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~~G~l~iPC~~~-~Fe~~l~~l 99 (100)
T PF02519_consen 39 GHFAVYVGEERRRFVVPVSYLNHPLFQELLEQAEEEFGFDQDGPLTIPCDVV-LFEHLLWLL 99 (100)
T ss_pred CeEEEEeCccceEEEechHHcCchhHHHHHHHHhhhcCcCCCCcEEeeCCHH-HHHHHHHHh
Confidence 346666654 24555567777777764 66789999999865 555555443
No 171
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=28.93 E-value=1.1e+02 Score=19.07 Aligned_cols=17 Identities=0% Similarity=-0.044 Sum_probs=12.3
Q ss_pred HHHHHHHHhcCCeEEEc
Q psy9123 41 WMRDIKNQNESGSVLVP 57 (118)
Q Consensus 41 ~~~I~~Tl~~GG~VLIP 57 (118)
.+.+.+-+++||.++|-
T Consensus 53 ~~~l~~~v~~G~~lvl~ 69 (70)
T PF14258_consen 53 AEALLEWVEAGNTLVLA 69 (70)
T ss_pred HHHHHHHHHcCCEEEEe
Confidence 34566677899999874
No 172
>COG4825 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
Probab=28.72 E-value=42 Score=28.99 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=21.3
Q ss_pred HHHHHHHhcCCeEEEcCCchH------HHHHH
Q psy9123 42 MRDIKNQNESGSVLVPCYPSG------VIYDL 67 (118)
Q Consensus 42 ~~I~~Tl~~GG~VLIPaFavG------RtqEL 67 (118)
.+-++|++.|-+|++|+++-| |+|+|
T Consensus 236 ~i~~~aLR~ga~vvlpad~dGhApGleRiQdL 267 (395)
T COG4825 236 QISTEALRCGAKVVLPADADGHAPGLERIQDL 267 (395)
T ss_pred hhhHHHHhcccceeeccCCCCCCchHHHHHhc
Confidence 455789999999999999854 77765
No 173
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=28.65 E-value=76 Score=23.96 Aligned_cols=37 Identities=11% Similarity=0.040 Sum_probs=23.3
Q ss_pred ceeEEEEccccch-hhHHHHHHHHHHHHhcCCeEEEcC
Q psy9123 22 SKIAVLLHSDLNN-ITCDEKWMRDIKNQNESGSVLVPC 58 (118)
Q Consensus 22 ~~~~~~~~~~~~~-~~~~eL~~~I~~Tl~~GG~VLIPa 58 (118)
.++||+|...-.. ..-++-.+.+.+-+++||-++.=-
T Consensus 51 ~~~Dvvv~~~~~~~~l~~~~~~al~~~v~~Ggglv~lH 88 (217)
T PF06283_consen 51 KGYDVVVFYNTGGDELTDEQRAALRDYVENGGGLVGLH 88 (217)
T ss_dssp CT-SEEEEE-SSCCGS-HHHHHHHHHHHHTT-EEEEEG
T ss_pred cCCCEEEEECCCCCcCCHHHHHHHHHHHHcCCCEEEEc
Confidence 5799998877764 244566777888888887776543
No 174
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=28.64 E-value=2.3e+02 Score=21.17 Aligned_cols=67 Identities=7% Similarity=0.025 Sum_probs=34.8
Q ss_pred ceeEEEEccccch----hhHHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHHhhcCCCCCCCEEEeChh
Q psy9123 22 SKIAVLLHSDLNN----ITCDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSHLDNSSLTQIPMFFISPV 91 (118)
Q Consensus 22 ~~~~~~~~~~~~~----~~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l~~~~~Lp~iPIyldSPm 91 (118)
.+||+++.++... +...++...+.+..++|+.+. ..+-+........+..++....- ..++++-+|.
T Consensus 118 ~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 188 (219)
T TIGR02021 118 GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFT--FAPKTAWLAFLKMIGELFPGSSR-ATSAYLHPMT 188 (219)
T ss_pred CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEE--ECCCchHHHHHHHHHhhCcCccc-ccceEEecHH
Confidence 4699888766532 223344444444444333333 33445555555555555543322 2457776665
No 175
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=28.53 E-value=2.6e+02 Score=21.17 Aligned_cols=62 Identities=6% Similarity=0.005 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHHHhcCCeEEEc-------CC---------chHHHHHHHHHHHHHhhcC-CCCCCCEEEeChhHHHHH
Q psy9123 35 ITCDEKWMRDIKNQNESGSVLVP-------CY---------PSGVIYDLFECLSSHLDNS-SLTQIPMFFISPVADISL 96 (118)
Q Consensus 35 ~~~~eL~~~I~~Tl~~GG~VLIP-------aF---------avGRtqELL~~L~~l~~~~-~Lp~iPIyldSPmA~~al 96 (118)
+..+.+.+.+...+..|..||+= +| ..++-.++.+.+.+..... ..|++=||++.|-....-
T Consensus 80 ~R~~~~~~~i~~~l~~g~~VI~DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~Pd~~i~l~~~~~~~~~ 158 (219)
T cd02030 80 SRLLQYSDALEHLLSTGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDVPVPEVQK 158 (219)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHH
Confidence 34455666677777777777532 22 2234455566665543333 457888999999865543
No 176
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=28.28 E-value=92 Score=25.58 Aligned_cols=38 Identities=16% Similarity=0.134 Sum_probs=25.3
Q ss_pred EEEEccccc--hhhHHHHHHHHHHHHhcCCe----EEEcCCchHH
Q psy9123 25 AVLLHSDLN--NITCDEKWMRDIKNQNESGS----VLVPCYPSGV 63 (118)
Q Consensus 25 ~~~~~~~~~--~~~~~eL~~~I~~Tl~~GG~----VLIPaFavGR 63 (118)
||++..... ++..-||+ .+.+++++.|. ++||.||-.|
T Consensus 51 ~V~ivqs~~~~n~~l~ell-l~~~alr~~~a~~i~~ViPY~~YaR 94 (301)
T PRK07199 51 TVVLVCSLDRPDEKLLPLL-FAAEAARELGARRVGLVAPYLAYMR 94 (301)
T ss_pred EEEEECCCCCCcHHHHHHH-HHHHHHHHcCCCeEEEEeecccccc
Confidence 665555532 44455655 45567777775 7999999888
No 177
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=27.75 E-value=74 Score=24.53 Aligned_cols=36 Identities=8% Similarity=0.059 Sum_probs=26.5
Q ss_pred ceeEEEEccccchh--hHHHHHHHHHHHHhcCCeEEEc
Q psy9123 22 SKIAVLLHSDLNNI--TCDEKWMRDIKNQNESGSVLVP 57 (118)
Q Consensus 22 ~~~~~~~~~~~~~~--~~~eL~~~I~~Tl~~GG~VLIP 57 (118)
.+||+++.+....- ..+++...+.+.++.||.++|.
T Consensus 88 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 88 PDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred CCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence 37999988764311 1256677788899999999985
No 178
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=27.53 E-value=92 Score=22.87 Aligned_cols=37 Identities=5% Similarity=-0.047 Sum_probs=25.2
Q ss_pred CceeEEEEccccc--hhhHHHHHHHHHHHHhcCCeEEEc
Q psy9123 21 QSKIAVLLHSDLN--NITCDEKWMRDIKNQNESGSVLVP 57 (118)
Q Consensus 21 ~~~~~~~~~~~~~--~~~~~eL~~~I~~Tl~~GG~VLIP 57 (118)
..+||+++.+-.. -....++.+.+.+.++.||.+++-
T Consensus 119 ~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~ 157 (239)
T PRK00216 119 DNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred CCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEE
Confidence 3478887654321 122456777888899999999873
No 179
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=27.39 E-value=2.5e+02 Score=20.58 Aligned_cols=50 Identities=10% Similarity=0.076 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhcCCeEE-E----cC-CchHHHHHHHHHHHHHhhcCCCCCCCEE
Q psy9123 37 CDEKWMRDIKNQNESGSVL-V----PC-YPSGVIYDLFECLSSHLDNSSLTQIPMF 86 (118)
Q Consensus 37 ~~eL~~~I~~Tl~~GG~VL-I----Pa-FavGRtqELL~~L~~l~~~~~Lp~iPIy 86 (118)
.+.+...|.+.-+.|-.++ + |. +.-.+..++-..+.++-++.+++-+|.|
T Consensus 94 ~~~l~~li~~~~~~~~~~ill~~~~P~~~~~~~~~~~~~~~~~~a~~~~v~~id~~ 149 (191)
T PRK10528 94 EQTLRQIIQDVKAANAQPLLMQIRLPANYGRRYNEAFSAIYPKLAKEFDIPLLPFF 149 (191)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeecCCcccHHHHHHHHHHHHHHHHHhCCCccHHH
Confidence 3455555555544444333 3 22 1122334444455555555556655544
No 180
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=27.35 E-value=3.8e+02 Score=22.65 Aligned_cols=66 Identities=15% Similarity=-0.080 Sum_probs=34.4
Q ss_pred cccchhhHHHHHHHHHHHHhc--CCeEEEcCCchHHHHHHHHHHHHHhhcCCCCCCCEEEeChhHHHHHHH
Q psy9123 30 SDLNNITCDEKWMRDIKNQNE--SGSVLVPCYPSGVIYDLFECLSSHLDNSSLTQIPMFFISPVADISLAY 98 (118)
Q Consensus 30 ~~~~~~~~~eL~~~I~~Tl~~--GG~VLIPaFavGRtqELL~~L~~l~~~~~Lp~iPIyldSPmA~~al~~ 98 (118)
-|++.+.+.++...+.+.+++ ++.|+|=.+.=-=-.++-+.+..-+.+.++. ||...++..=++.|
T Consensus 13 ~~lt~~~v~~l~~a~~~~l~~~~~~~VvVg~D~R~~s~~~~~a~~~gL~s~G~~---V~~~g~~pTP~~~~ 80 (443)
T cd03089 13 EELTEEIAYAIGRAFGSWLLEKGAKKVVVGRDGRLSSPELAAALIEGLLAAGCD---VIDIGLVPTPVLYF 80 (443)
T ss_pred CccCHHHHHHHHHHHHHHHHhcCCCeEEEEECCCCCHHHHHHHHHHHHHHcCCc---EEEeCCcchHHHHH
Confidence 356666666666666666644 4456665554433444555555555554332 55444444333333
No 181
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=27.30 E-value=72 Score=26.47 Aligned_cols=38 Identities=8% Similarity=-0.009 Sum_probs=29.3
Q ss_pred CCceeEEEEccccchhhH--HHHHHHHHHHHhcCCeEEEc
Q psy9123 20 GQSKIAVLLHSDLNNITC--DEKWMRDIKNQNESGSVLVP 57 (118)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~--~eL~~~I~~Tl~~GG~VLIP 57 (118)
.+.||||+-.-.+.++.. ..|.+-|.++++.+|.+||-
T Consensus 148 ~~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 148 TDFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred cCCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 356899998877766543 35777888899999998874
No 182
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=27.23 E-value=1.6e+02 Score=23.54 Aligned_cols=65 Identities=15% Similarity=0.099 Sum_probs=45.5
Q ss_pred CceeEEEEccccchhhHHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHHhhcCCC----CCCCEEEeCh
Q psy9123 21 QSKIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSHLDNSSL----TQIPMFFISP 90 (118)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l~~~~~L----p~iPIyldSP 90 (118)
-..-|++++-++.+|-.-+|.+.+.+ +....||+|+-.-. -.+..-|.+..++-++ | =|.+-..|
T Consensus 49 i~~~Dl~I~y~lHPDl~~~l~~~~~e--~g~kavIvp~~~~~--~g~~~~lk~~~e~~gi~~~~P-~~~CsL~~ 117 (217)
T PF02593_consen 49 IPEADLLIAYGLHPDLTYELPEIAKE--AGVKAVIVPSESPK--PGLRRQLKKQLEEFGIEVEFP-KPFCSLEE 117 (217)
T ss_pred CCCCCEEEEeccCchhHHHHHHHHHH--cCCCEEEEecCCCc--cchHHHHHHHHHhcCceeecC-ccccccCC
Confidence 34678999999999999999988887 66677888887766 4555556555555432 3 35555554
No 183
>COG0776 HimA Bacterial nucleoid DNA-binding protein [DNA replication, recombination, and repair]
Probab=27.21 E-value=96 Score=21.76 Aligned_cols=29 Identities=7% Similarity=-0.091 Sum_probs=25.1
Q ss_pred cchhhHHHHHHHHHHHHhcCCeEEEcCCc
Q psy9123 32 LNNITCDEKWMRDIKNQNESGSVLVPCYP 60 (118)
Q Consensus 32 ~~~~~~~eL~~~I~~Tl~~GG~VLIPaFa 60 (118)
.-+..++.+.+.|.++|.+|..|=|+-|-
T Consensus 21 ~a~~~v~~~~~~i~~aL~~G~~V~l~gFG 49 (94)
T COG0776 21 DAEEAVDAFLEEITEALAKGERVELRGFG 49 (94)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEEEeeee
Confidence 44677889999999999999999998774
No 184
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=27.09 E-value=2.3e+02 Score=20.44 Aligned_cols=57 Identities=12% Similarity=0.052 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhcCCeEEEcC-------C---chHHHHHHHHHHHHHhhcCCCCCCCEEEeChhHHHH
Q psy9123 38 DEKWMRDIKNQNESGSVLVPC-------Y---PSGVIYDLFECLSSHLDNSSLTQIPMFFISPVADIS 95 (118)
Q Consensus 38 ~eL~~~I~~Tl~~GG~VLIPa-------F---avGRtqELL~~L~~l~~~~~Lp~iPIyldSPmA~~a 95 (118)
+.+.+.+...+.+|..|++=- | +-|--.+.++.+...+... .|++=||++.|-....
T Consensus 76 ~~~~~~i~~~l~~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~-~~d~~i~l~~~~~~~~ 142 (195)
T TIGR00041 76 EHLEDKIKPALAEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGD-MPDLTIYLDIDPEVAL 142 (195)
T ss_pred HHHHHHHHHHHhCCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCC-CCCEEEEEeCCHHHHH
Confidence 344556667777776665541 1 2122345566665554433 4778899999877554
No 185
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=27.05 E-value=87 Score=26.39 Aligned_cols=35 Identities=3% Similarity=-0.099 Sum_probs=25.3
Q ss_pred ceeEEEEccccch--hhHHHHHHHHHHHHhcCCeEEE
Q psy9123 22 SKIAVLLHSDLNN--ITCDEKWMRDIKNQNESGSVLV 56 (118)
Q Consensus 22 ~~~~~~~~~~~~~--~~~~eL~~~I~~Tl~~GG~VLI 56 (118)
.+||+++.+.... ...+.+.+.+.+.++.||.++|
T Consensus 177 ~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvI 213 (340)
T PLN02490 177 DYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACL 213 (340)
T ss_pred CceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEE
Confidence 4699988765332 1234567888899999999866
No 186
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=26.93 E-value=85 Score=23.81 Aligned_cols=39 Identities=15% Similarity=-0.046 Sum_probs=28.2
Q ss_pred ccchhhHHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHH
Q psy9123 31 DLNNITCDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECL 71 (118)
Q Consensus 31 ~~~~~~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L 71 (118)
+...+..++..+.+.+++++||+|.+ |-+|.-.-+-..+
T Consensus 24 ~~~~~~i~~a~~~i~~al~~~~rI~i--~G~G~S~~~A~~~ 62 (192)
T PRK00414 24 DANIHAIQRAAVLIADSFKAGGKVLS--CGNGGSHCDAMHF 62 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCEEEE--EeCcHHHHHHHHH
Confidence 34557789999999999999999986 4555544443334
No 187
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=26.84 E-value=2.8e+02 Score=21.01 Aligned_cols=55 Identities=20% Similarity=0.266 Sum_probs=36.6
Q ss_pred hcCCeEEEcCCchHHHHHHHHHHHHHhhcCCCCCCCEEEeChhHHHHHHHHHHHHhhhhHHHH
Q psy9123 49 NESGSVLVPCYPSGVIYDLFECLSSHLDNSSLTQIPMFFISPVADISLAYSNILAEWNTKVEV 111 (118)
Q Consensus 49 ~~GG~VLIPaFavGRtqELL~~L~~l~~~~~Lp~iPIyldSPmA~~al~~~~~~~Ewl~~~~~ 111 (118)
...+.|.+| =-.|-+.|+++.+. |.+-++.+-||.+..+ ..|++-..+|+..-..
T Consensus 96 ~sda~I~lP-GG~GTL~El~e~~~--~~qlg~~~kPiil~n~-----~g~~~~l~~~l~~~~~ 150 (178)
T TIGR00730 96 LADAFIAMP-GGFGTLEELFEVLT--WAQLGIHQKPIILFNV-----NGHFDGLVEWLKYSIQ 150 (178)
T ss_pred hCCEEEEcC-CCcchHHHHHHHHH--HHHcCCCCCCEEEECC-----cchHHHHHHHHHHHHH
Confidence 356777777 67888999998885 4443444567877753 4567777777664433
No 188
>PLN02382 probable sucrose-phosphatase
Probab=26.78 E-value=91 Score=26.67 Aligned_cols=49 Identities=18% Similarity=0.154 Sum_probs=31.7
Q ss_pred eEEEEcccc----ch------hhHHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHHh
Q psy9123 24 IAVLLHSDL----NN------ITCDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSHL 75 (118)
Q Consensus 24 ~~~~~~~~~----~~------~~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l~ 75 (118)
...+|+||+ .+ -+..++..++.+ +.+.|..++ ++.||..+.+.-+.+.+
T Consensus 8 ~~~lI~sDLDGTLL~~~~~~~~s~~~~~~l~~~-~~~~gi~fv--~aTGR~~~~~~~l~~~~ 66 (413)
T PLN02382 8 PRLMIVSDLDHTMVDHHDPENLSLLRFNALWEA-EYRHDSLLV--FSTGRSPTLYKELRKEK 66 (413)
T ss_pred CCEEEEEcCCCcCcCCCCccchhHHHHHHHHHH-hhcCCeeEE--EEcCCCHHHHHHHHHhC
Confidence 357888883 22 123455555554 667777776 78999988887765544
No 189
>PLN02244 tocopherol O-methyltransferase
Probab=26.66 E-value=80 Score=25.93 Aligned_cols=38 Identities=3% Similarity=0.068 Sum_probs=27.1
Q ss_pred ceeEEEEccccchh--hHHHHHHHHHHHHhcCCeEEEcCC
Q psy9123 22 SKIAVLLHSDLNNI--TCDEKWMRDIKNQNESGSVLVPCY 59 (118)
Q Consensus 22 ~~~~~~~~~~~~~~--~~~eL~~~I~~Tl~~GG~VLIPaF 59 (118)
..||+++......- ...++.+.+.+.++.||.++|-.+
T Consensus 185 ~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 185 GQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred CCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 46898876544321 235677788999999999998543
No 190
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=26.66 E-value=43 Score=21.58 Aligned_cols=33 Identities=6% Similarity=0.055 Sum_probs=18.4
Q ss_pred ceeEEEEccccchhh--HHHHHHHHHHHHhcCCeE
Q psy9123 22 SKIAVLLHSDLNNIT--CDEKWMRDIKNQNESGSV 54 (118)
Q Consensus 22 ~~~~~~~~~~~~~~~--~~eL~~~I~~Tl~~GG~V 54 (118)
.+||+.+.+....-. .+++.+.+.+.++.||.+
T Consensus 65 ~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 65 ESFDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred cccceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 589999887665543 446666777789999974
No 191
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=26.36 E-value=1.2e+02 Score=21.67 Aligned_cols=37 Identities=14% Similarity=0.053 Sum_probs=18.5
Q ss_pred eeEEEEccccchhhHHHHHHHHHHHHhcCCeEEEcCCc
Q psy9123 23 KIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLVPCYP 60 (118)
Q Consensus 23 ~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLIPaFa 60 (118)
..-+++.+|++--+.+.+...+... +.++.+++|.+.
T Consensus 85 ~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~~~~~~~ 121 (181)
T cd02503 85 DWVLVLACDMPFLPPELLERLLAAA-EEGADAVVPKSG 121 (181)
T ss_pred CeEEEEeCCcCCCCHHHHHHHHHhh-ccCCCEEEEeeC
Confidence 3445566666544444444333333 455556666544
No 192
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=26.16 E-value=75 Score=20.92 Aligned_cols=38 Identities=21% Similarity=0.247 Sum_probs=29.8
Q ss_pred HHHHHHHhcCCeEEEcCCc-hHHHHHHHHHHHHHhhcCCCC
Q psy9123 42 MRDIKNQNESGSVLVPCYP-SGVIYDLFECLSSHLDNSSLT 81 (118)
Q Consensus 42 ~~I~~Tl~~GG~VLIPaFa-vGRtqELL~~L~~l~~~~~Lp 81 (118)
+.+.+.+.++| ||-+|+ +|-+-=+-|.|.+.+.+||++
T Consensus 2 e~i~~vl~~ng--LitaFa~vG~~m~~S~~lS~~LT~Grih 40 (60)
T PF03818_consen 2 EMIEKVLTKNG--LITAFAVVGIIMWVSYWLSKKLTRGRIH 40 (60)
T ss_pred hHHHHHHhhCc--hHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 45666676666 677776 588888889999999999986
No 193
>PRK05578 cytidine deaminase; Validated
Probab=26.13 E-value=27 Score=25.51 Aligned_cols=47 Identities=11% Similarity=0.156 Sum_probs=32.2
Q ss_pred cCCchHHHHHHHHHHHHHhhcCCCCCCCEEEeChhH-HHHHHHHHHHHhhhhHHH
Q psy9123 57 PCYPSGVIYDLFECLSSHLDNSSLTQIPMFFISPVA-DISLAYSNILAEWNTKVE 110 (118)
Q Consensus 57 PaFavGRtqELL~~L~~l~~~~~Lp~iPIyldSPmA-~~al~~~~~~~Ewl~~~~ 110 (118)
+..|+|.-.++|..+. . ++++|++.++-. .+...+.+..|.|+.++.
T Consensus 82 ~~sPCG~CRQ~l~e~~---~----~~~~v~l~~~~~~~~~~~l~eLLP~~f~~~~ 129 (131)
T PRK05578 82 PLSPCGRCRQVLAEFG---G----PDLLVTLVAKDGPTGEMTLGELLPYAFTPDD 129 (131)
T ss_pred ccCccHHHHHHHHHhC---C----CCcEEEEEcCCCCEEEEEHHHhCcCcCChhh
Confidence 4689999988877663 1 468899876543 333555777777776653
No 194
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=26.11 E-value=2.9e+02 Score=20.88 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=46.3
Q ss_pred cCCeEEEcCCc-hHHHHHHHHHHHHHhhcCCCCCCCEEEeChhHHHHHHHHHHHHhhhhH
Q psy9123 50 ESGSVLVPCYP-SGVIYDLFECLSSHLDNSSLTQIPMFFISPVADISLAYSNILAEWNTK 108 (118)
Q Consensus 50 ~GG~VLIPaFa-vGRtqELL~~L~~l~~~~~Lp~iPIyldSPmA~~al~~~~~~~Ewl~~ 108 (118)
..|.++|-+-| +|-|.-|+..+..++..+++++-.|.+.++.-..+-++-+...+.+.+
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~ 71 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEE 71 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCc
Confidence 47777777666 799999999999888888888888999999888777777777665544
No 195
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=26.04 E-value=1.6e+02 Score=22.20 Aligned_cols=61 Identities=15% Similarity=0.015 Sum_probs=45.5
Q ss_pred eEEEEccccchhhHHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHHhhcCCCCCCCEEEeC
Q psy9123 24 IAVLLHSDLNNITCDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSHLDNSSLTQIPMFFIS 89 (118)
Q Consensus 24 ~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l~~~~~Lp~iPIyldS 89 (118)
|+|..-. +...+ .+++..+++....|+.=|.-.|.=.+++-.+.+.+++.+..++.++.=-
T Consensus 41 feVi~~g-~~~tp----~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~~GG 101 (143)
T COG2185 41 FEVINLG-LFQTP----EEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDILVVVGG 101 (143)
T ss_pred ceEEecC-CcCCH----HHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceEEeecC
Confidence 6765432 33333 3466777899999999999999999999999988888888777766533
No 196
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=25.81 E-value=80 Score=24.42 Aligned_cols=30 Identities=7% Similarity=-0.138 Sum_probs=24.3
Q ss_pred ccchhhHHHHHHHHHHHHhcCCeEEEcCCc
Q psy9123 31 DLNNITCDEKWMRDIKNQNESGSVLVPCYP 60 (118)
Q Consensus 31 ~~~~~~~~eL~~~I~~Tl~~GG~VLIPaFa 60 (118)
-++.+..+...+.+.+.++.||.+++=+|.
T Consensus 125 ~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 125 ALPEEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred cCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 356677788999999999999987776664
No 197
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=25.74 E-value=5.7e+02 Score=24.07 Aligned_cols=61 Identities=11% Similarity=0.026 Sum_probs=32.1
Q ss_pred EccccchhhHHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHH------------------HHHHHhhcCCCCCCCEEEeC
Q psy9123 28 LHSDLNNITCDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFE------------------CLSSHLDNSSLTQIPMFFIS 89 (118)
Q Consensus 28 ~~~~~~~~~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~------------------~L~~l~~~~~Lp~iPIyldS 89 (118)
+..|..+.....-.+.+.+.+++.|-=++.+...+-+..+.. ++.. .++.+. .+|||+.+
T Consensus 6 i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~Pv~~~~ 83 (713)
T PRK15399 6 IMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEHNPRICGVIFDWDEYSLDLCSD-INQLNE-YLPLYAFI 83 (713)
T ss_pred EecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhcccceeEEEEecccchHHHHHH-HHHhCC-CCCEEEEc
Confidence 334443333333344455566666666666666665555444 2222 233333 59999987
Q ss_pred h
Q psy9123 90 P 90 (118)
Q Consensus 90 P 90 (118)
.
T Consensus 84 ~ 84 (713)
T PRK15399 84 N 84 (713)
T ss_pred C
Confidence 6
No 198
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=25.67 E-value=85 Score=25.77 Aligned_cols=37 Identities=3% Similarity=-0.032 Sum_probs=26.2
Q ss_pred CceeEEEEccccch--hhHHHHHHHHHHHHhcCCeEEEc
Q psy9123 21 QSKIAVLLHSDLNN--ITCDEKWMRDIKNQNESGSVLVP 57 (118)
Q Consensus 21 ~~~~~~~~~~~~~~--~~~~eL~~~I~~Tl~~GG~VLIP 57 (118)
..+||+++...... .....+.+.+.+.++.||.+++=
T Consensus 187 ~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 187 LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 45799988754331 12356777888999999999874
No 199
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=25.61 E-value=31 Score=21.85 Aligned_cols=41 Identities=22% Similarity=0.309 Sum_probs=29.6
Q ss_pred CCCchhHHHHhhcccCCCceeEEEEccccchhhHHHHHHHHHH
Q psy9123 4 NGDNLDSLIASTASSNGQSKIAVLLHSDLNNITCDEKWMRDIK 46 (118)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~I~~ 46 (118)
.|=|++||-++....+|.+++-+.+.+| ++..+.|..-+++
T Consensus 16 Rg~nI~sl~v~~~~~~~~~riti~v~~~--~~~i~~l~~Ql~K 56 (63)
T PF13710_consen 16 RGFNIESLSVGPTEDPGISRITIVVSGD--DREIEQLVKQLEK 56 (63)
T ss_dssp TT-EECEEEEEE-SSTTEEEEEEEEES---CCHHHHHHHHHHC
T ss_pred CCeEEeeEEeeecCCCCEEEEEEEEeeC--chhHHHHHHHHhc
Confidence 4678888888887888999999888876 5666777766655
No 200
>PF09181 ProRS-C_2: Prolyl-tRNA synthetase, C-terminal; InterPro: IPR015264 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found predominantly found in prolyl-tRNA synthetases from archaeal Methanococci species. It contains a zinc binding site, and adopts a structure consisting of alpha helices and antiparallel beta sheets arranged in 2 layers, in a beta-alpha-beta-alpha-beta motif []. ; GO: 0000166 nucleotide binding, 0004827 proline-tRNA ligase activity, 0005524 ATP binding, 0006433 prolyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1NJ8_C.
Probab=25.56 E-value=49 Score=22.24 Aligned_cols=24 Identities=13% Similarity=0.122 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHH-hcCCeEEEcCCc
Q psy9123 37 CDEKWMRDIKNQ-NESGSVLVPCYP 60 (118)
Q Consensus 37 ~~eL~~~I~~Tl-~~GG~VLIPaFa 60 (118)
+..|.+-|.+++ ++.|.||||-.-
T Consensus 11 ~~~l~e~iK~~L~ekrgviLiPy~e 35 (68)
T PF09181_consen 11 VNLLIEKIKEILSEKRGVILIPYDE 35 (68)
T ss_dssp ------HHHHHCTTT-SEEEEE--G
T ss_pred chhhHHHHHHHHHhcCCEEEEeCcH
Confidence 456777888886 569999999653
No 201
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=25.41 E-value=1e+02 Score=25.22 Aligned_cols=38 Identities=11% Similarity=0.128 Sum_probs=31.8
Q ss_pred CCceeEEEEccc----cchhhHHHHHHHHHHHHhcCCeEEEc
Q psy9123 20 GQSKIAVLLHSD----LNNITCDEKWMRDIKNQNESGSVLVP 57 (118)
Q Consensus 20 ~~~~~~~~~~~~----~~~~~~~eL~~~I~~Tl~~GG~VLIP 57 (118)
...+|||++.=+ ..+.+.++++......++.||.++|=
T Consensus 199 ~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 199 FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 567799987655 45778889999999999999999873
No 202
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=25.26 E-value=1.5e+02 Score=17.68 Aligned_cols=39 Identities=8% Similarity=-0.037 Sum_probs=25.5
Q ss_pred CceeEEEEccccchhhH-----HHHHHHHHHHHhcCCeEEEcCC
Q psy9123 21 QSKIAVLLHSDLNNITC-----DEKWMRDIKNQNESGSVLVPCY 59 (118)
Q Consensus 21 ~~~~~~~~~~~~~~~~~-----~eL~~~I~~Tl~~GG~VLIPaF 59 (118)
.+++|+++.......+. ..+.+.+.+..++|+.++-=|.
T Consensus 44 ~~~~d~lii~g~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~c~ 87 (115)
T cd01653 44 LDDYDGLILPGGPGTPDDLARDEALLALLREAAAAGKPILGICL 87 (115)
T ss_pred hhccCEEEECCCCCchhhhccCHHHHHHHHHHHHcCCEEEEECc
Confidence 46788888877665554 4567777777777665554333
No 203
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=25.21 E-value=78 Score=26.20 Aligned_cols=30 Identities=17% Similarity=0.164 Sum_probs=23.1
Q ss_pred ccccchhhHHHHHHHHHHHHhcCCeEEEcC
Q psy9123 29 HSDLNNITCDEKWMRDIKNQNESGSVLVPC 58 (118)
Q Consensus 29 ~~~~~~~~~~eL~~~I~~Tl~~GG~VLIPa 58 (118)
..+..-.+.++|.+.+.+++.+||++|+=+
T Consensus 285 ~~~~~~ks~~~li~~l~~~vs~ngnlLLNi 314 (346)
T PF01120_consen 285 TPDEKYKSADELIDILVDSVSRNGNLLLNI 314 (346)
T ss_dssp GGGCGS--HHHHHHHHHHHHTBTEEEEEEE
T ss_pred CCCCCcCCHHHHHHHHHHHhccCceEEEec
Confidence 445666778999999999999999999633
No 204
>PLN02476 O-methyltransferase
Probab=25.14 E-value=1.1e+02 Score=25.07 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=32.6
Q ss_pred CCCchhHHHHhhcccCC-CceeEEEEccccchhhHHHHHHHHHHHHhcCCeEEEc
Q psy9123 4 NGDNLDSLIASTASSNG-QSKIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLVP 57 (118)
Q Consensus 4 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLIP 57 (118)
.||-++.|=. -. .++ ..+||.++. |-......+..+.+.+-++.||.+++-
T Consensus 176 ~GdA~e~L~~-l~-~~~~~~~FD~VFI-Da~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 176 HGLAAESLKS-MI-QNGEGSSYDFAFV-DADKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred EcCHHHHHHH-HH-hcccCCCCCEEEE-CCCHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 4666665522 11 123 357997665 444555667777777889999998875
No 205
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=25.06 E-value=60 Score=27.70 Aligned_cols=47 Identities=11% Similarity=0.034 Sum_probs=32.8
Q ss_pred cchhhHHHHHHHHHHHHhcCCeEEEc--CCchHH----HHHHHHHHHHHhhcC
Q psy9123 32 LNNITCDEKWMRDIKNQNESGSVLVP--CYPSGV----IYDLFECLSSHLDNS 78 (118)
Q Consensus 32 ~~~~~~~eL~~~I~~Tl~~GG~VLIP--aFavGR----tqELL~~L~~l~~~~ 78 (118)
..-.+.++|.+.+.+++.+|||+|+= -.+-|+ ..+.|..+.+.++.+
T Consensus 281 ~~~ks~~~li~~l~~~Vsk~GnlLLNVgP~~dG~ip~~~~~~L~~iG~Wl~~n 333 (384)
T smart00812 281 SDYKSPKELIRDLVDIVSKGGNLLLNVGPKADGTIPEEEEERLLEIGKWLKVN 333 (384)
T ss_pred ccCCCHHHHHHHHhhhcCCCceEEEccCCCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 33568899999999999999999963 344444 344555666655554
No 206
>cd07896 Adenylation_kDNA_ligase_like Adenylation domain of kDNA ligases and similar proteins. The mitochondrial DNA of parasitic protozoans is highly unusual. It is termed the kinetoplast DNA (kDNA) and consists of circular DNA molecules (maxicircles) and several thousand smaller circular molecules (minicircles). This group is composed of kDNA ligase, Chlorella virus DNA ligase, and similar proteins. kDNA ligase and Chlorella virus DNA ligase are the smallest known ATP-dependent ligases. They are involved in DNA replication or repair. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. They have a highly modular architecture consisting of a unique arrangement of two or more discrete domains. The adenylation and the C-terminal oligonucleotide/oligosaccharide binding (OB)-fold domains comprise a catalytic core unit that is common to most me
Probab=24.67 E-value=1.8e+02 Score=21.14 Aligned_cols=54 Identities=9% Similarity=-0.105 Sum_probs=32.3
Q ss_pred eEEEEccccch-hhHHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHHhhcCC
Q psy9123 24 IAVLLHSDLNN-ITCDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSHLDNSS 79 (118)
Q Consensus 24 ~~~~~~~~~~~-~~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l~~~~~ 79 (118)
||+|- .+++= +..+.|.+.+. .+..+...++|...+.-..++..++.+..+.|.
T Consensus 95 FDil~-~~~p~~eR~~~L~~~i~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~ 149 (174)
T cd07896 95 FDLPS-AKGPFEERLERLKNLLE-KIPNPHIKIVPQIPVKSNEALDQYLDEVVAAGG 149 (174)
T ss_pred EeCCC-CCCCHHHHHHHHHHHHH-hCCCCcEEEEeeeeeCCHHHHHHHHHHHHhcCC
Confidence 56665 32222 22333444333 223466788899888877788888887777653
No 207
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=24.52 E-value=66 Score=25.05 Aligned_cols=38 Identities=8% Similarity=0.032 Sum_probs=29.5
Q ss_pred ceeEEEEcc----ccchhhHHHHHHHHHHHHhcCCeEEEcCC
Q psy9123 22 SKIAVLLHS----DLNNITCDEKWMRDIKNQNESGSVLVPCY 59 (118)
Q Consensus 22 ~~~~~~~~~----~~~~~~~~eL~~~I~~Tl~~GG~VLIPaF 59 (118)
.++|+++.+ -+..+...++.+.+.+.++.||-.+|=+|
T Consensus 93 ~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 93 EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 468987642 56777788899999999999999998443
No 208
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=24.51 E-value=82 Score=24.71 Aligned_cols=45 Identities=9% Similarity=0.057 Sum_probs=30.6
Q ss_pred ceeEEEEccccchhhHHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHH
Q psy9123 22 SKIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECL 71 (118)
Q Consensus 22 ~~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L 71 (118)
..||+++...-+ . ..+.+.+.++.||.+++-....+-..+|-..+
T Consensus 150 ~sfD~I~~~~~~-~----~~~e~~rvLkpgG~li~~~p~~~~l~el~~~~ 194 (272)
T PRK11088 150 QSLDAIIRIYAP-C----KAEELARVVKPGGIVITVTPGPRHLFELKGLI 194 (272)
T ss_pred CceeEEEEecCC-C----CHHHHHhhccCCCEEEEEeCCCcchHHHHHHh
Confidence 368988865432 2 23456788999999999777666566665544
No 209
>TIGR02909 spore_YkwD uncharacterized protein, YkwD family. Members of this protein family represent a subset of those belonging to Pfam family pfam00188 (SCP-like extracellular protein). Based on currently cuttoffs for this model, all member proteins are found in Bacteria capable of endospore formation. Members include a named but uncharacterized protein, YkwD of Bacillus subtilis. Only the C-terminal region is well-conserved and is included in the seed alignment for this model. Three members of this family have an N-terminal domain homologous to the spore coat assembly protein SafA.
Probab=24.36 E-value=1.4e+02 Score=20.68 Aligned_cols=39 Identities=10% Similarity=0.092 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCEEEeChhHHHHHHHHHHH
Q psy9123 62 GVIYDLFECLSSHLDNSSLTQIPMFFISPVADISLAYSNIL 102 (118)
Q Consensus 62 GRtqELL~~L~~l~~~~~Lp~iPIyldSPmA~~al~~~~~~ 102 (118)
.--++++..++++..+.++| |+-.+.-++..|...++-+
T Consensus 3 ~~e~~~l~~iN~~R~~~Gl~--pL~~~~~L~~~A~~hA~~m 41 (127)
T TIGR02909 3 AEEKRVVELVNAERAKNGLK--PLKADPELSKVARLKSEDM 41 (127)
T ss_pred HHHHHHHHHHHHHHHHcCCC--CCccCHHHHHHHHHHHHHH
Confidence 34678999999999999997 4555666666554444433
No 210
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=24.35 E-value=2.9e+02 Score=20.96 Aligned_cols=51 Identities=10% Similarity=0.045 Sum_probs=26.6
Q ss_pred HHhcCCeEEEcCCchHHHHHHHHHHHHHhhcCCCCCCCEEEeChhHHHHHH
Q psy9123 47 NQNESGSVLVPCYPSGVIYDLFECLSSHLDNSSLTQIPMFFISPVADISLA 97 (118)
Q Consensus 47 Tl~~GG~VLIPaFavGRtqELL~~L~~l~~~~~Lp~iPIyldSPmA~~al~ 97 (118)
.+++++.-.|..|+..=+..++..+........+.+.+++.+||...++++
T Consensus 165 ~l~~~~~d~i~f~S~~~~~~f~~~~~~~~~~~~l~~~~~v~Ig~~ta~al~ 215 (240)
T PRK09189 165 ILGGAPFDAVLLYSRVAARRFFALMRLSIAPPADEKTRFLCLSARVAAALP 215 (240)
T ss_pred HHhcCCCCEEEEeCHHHHHHHHHHHhhhcCcccccccCeEEeCHHHHHHHh
Confidence 344555545544443334444444432211122356788899998877744
No 211
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=24.06 E-value=1.5e+02 Score=22.54 Aligned_cols=42 Identities=26% Similarity=0.353 Sum_probs=33.6
Q ss_pred CceeEEEEccccchhhHHHHHHHHHHHHhcCCeEEEcCCc--hHHHHHHH
Q psy9123 21 QSKIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLVPCYP--SGVIYDLF 68 (118)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLIPaFa--vGRtqELL 68 (118)
.-+|+|.=+|+-++.+ .-.|.+-+.+.|-=+||..| .| +|+|
T Consensus 16 ~K~IAvVG~S~~P~r~----sy~V~kyL~~~GY~ViPVNP~~~~--~eiL 59 (140)
T COG1832 16 AKTIAVVGASDKPDRP----SYRVAKYLQQKGYRVIPVNPKLAG--EEIL 59 (140)
T ss_pred CceEEEEecCCCCCcc----HHHHHHHHHHCCCEEEeeCcccch--HHhc
Confidence 3579999999999888 44566778899999999999 76 4544
No 212
>PF11074 DUF2779: Domain of unknown function(DUF2779); InterPro: IPR021301 This domain is conserved in bacteria. The function is not known.
Probab=23.97 E-value=1.9e+02 Score=21.04 Aligned_cols=44 Identities=20% Similarity=0.124 Sum_probs=33.4
Q ss_pred ccchhhHHHHHHHHHHHHhcC-CeEEEcC--CchHHHHHHHHHHHHH
Q psy9123 31 DLNNITCDEKWMRDIKNQNES-GSVLVPC--YPSGVIYDLFECLSSH 74 (118)
Q Consensus 31 ~~~~~~~~eL~~~I~~Tl~~G-G~VLIPa--FavGRtqELL~~L~~l 74 (118)
+...|++.++.+.+.+.+.+. |++++-- |=.+|..||.+...++
T Consensus 51 ~~~~DPr~~~~~~L~~~i~~~~g~ivvyN~sfE~~rL~ela~~~p~~ 97 (130)
T PF11074_consen 51 DPGEDPRRELIEALIKAIGSIYGSIVVYNKSFEKTRLKELAELFPDY 97 (130)
T ss_pred cCCCCchHHHHHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHhHHH
Confidence 555788888999999999888 9999865 4556777777775443
No 213
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=23.95 E-value=1.3e+02 Score=24.04 Aligned_cols=59 Identities=12% Similarity=0.014 Sum_probs=33.3
Q ss_pred CCCchhHHHHhhcccCCCceeEEEEccccchhhHHHHHHHHHHHHhcCCeEEEc-CCchHH
Q psy9123 4 NGDNLDSLIASTASSNGQSKIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLVP-CYPSGV 63 (118)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLIP-aFavGR 63 (118)
.||-++.|=.-.+..+...+||.+..---... .....+.+.+-++.||.+++- ++--|+
T Consensus 137 ~G~a~e~L~~l~~~~~~~~~fD~iFiDadK~~-Y~~y~~~~l~ll~~GGviv~DNvl~~G~ 196 (247)
T PLN02589 137 EGPALPVLDQMIEDGKYHGTFDFIFVDADKDN-YINYHKRLIDLVKVGGVIGYDNTLWNGS 196 (247)
T ss_pred eccHHHHHHHHHhccccCCcccEEEecCCHHH-hHHHHHHHHHhcCCCeEEEEcCCCCCCc
Confidence 46655544332222112357998776444444 445556667789999998875 433343
No 214
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=23.94 E-value=1.1e+02 Score=25.37 Aligned_cols=38 Identities=11% Similarity=0.070 Sum_probs=24.2
Q ss_pred EEEEccccc---hhhHHHHHHHHHHHHhcCCe----EEEcCCchHH
Q psy9123 25 AVLLHSDLN---NITCDEKWMRDIKNQNESGS----VLVPCYPSGV 63 (118)
Q Consensus 25 ~~~~~~~~~---~~~~~eL~~~I~~Tl~~GG~----VLIPaFavGR 63 (118)
||.+..++. ++..-||+ .+.+++++.|. ++||-|+-.|
T Consensus 55 ~V~iiqs~~~p~nd~lmeLl-~~~~alr~~~a~~i~~ViPYl~YaR 99 (319)
T PRK04923 55 EVFVIQPTCAPSAENLMELL-VLIDALKRASAASVTAVIPYFGYSR 99 (319)
T ss_pred eEEEEecCCCCCchHHHHHH-HHHHHHHHcCCcEEEEEeecccccc
Confidence 565554332 44455555 44567777774 8999999876
No 215
>TIGR00111 pelota probable translation factor pelota. This model describes the Drosophila protein Pelota, the budding yeast protein DOM34 which it can replace, and a set of closely related archaeal proteins. Members contain a proposed RNA binding motif. The meiotic defect in pelota mutants may be a complex result of a protein translation defect, as suggested in yeast by ribosomal protein RPS30A being a multicopy suppressor and by an altered polyribosome profile in DOM34 mutants rescued by RPS30A. This family is homologous to a family of peptide chain release factors. Pelota is proposed to act in protein translation.
Probab=23.79 E-value=1.3e+02 Score=25.23 Aligned_cols=35 Identities=20% Similarity=0.082 Sum_probs=25.4
Q ss_pred eeEEEEccccchhhHHHHHHHHHHHHhcCCeEEEc
Q psy9123 23 KIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLVP 57 (118)
Q Consensus 23 ~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLIP 57 (118)
-++.||.+|-.=...++..+.+..+-+.||.|.|=
T Consensus 293 AVetLLIsD~l~~~r~~~~~l~~~v~~~gg~V~i~ 327 (351)
T TIGR00111 293 AIEYLLVTDKVLVQREEIEKLLDSVESMGGKVVIL 327 (351)
T ss_pred CceEEEEecchhhhHHHHHHHHHHHHHcCCEEEEE
Confidence 46889999876223455777888888899987764
No 216
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=23.53 E-value=1.3e+02 Score=23.33 Aligned_cols=34 Identities=6% Similarity=-0.086 Sum_probs=27.0
Q ss_pred eeEEEEc----cccchhhHHHHHHHHHHHHhcCCeEEE
Q psy9123 23 KIAVLLH----SDLNNITCDEKWMRDIKNQNESGSVLV 56 (118)
Q Consensus 23 ~~~~~~~----~~~~~~~~~eL~~~I~~Tl~~GG~VLI 56 (118)
+||..+- .-++.+..++..+.+.+.++.||.+++
T Consensus 116 ~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 116 DVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 6777663 246677788999999999999998776
No 217
>PF01722 BolA: BolA-like protein; InterPro: IPR002634 This family consist of the morpho-protein BolA from Escherichia coli and its various homologs. In E. coli, over-expression of this protein causes round morphology and may be involved in switching the cell between elongation and septation systems during cell division []. The expression of BolA is growth rate regulated and is induced during the transition into the the stationary phase []. BolA is also induced by stress during early stages of growth [] and may have a general role in stress response. It has also been suggested that BolA can induce the transcription of penicillin binding proteins 6 and 5 [, ].; PDB: 1XS3_A 1V60_A 3O2E_A 1NY8_A 3TR3_A 2KZ0_A 2DHM_A 2KDN_A 1V9J_A.
Probab=23.46 E-value=68 Score=21.31 Aligned_cols=18 Identities=22% Similarity=0.254 Sum_probs=16.0
Q ss_pred CCCceeEEEEccccchhh
Q psy9123 19 NGQSKIAVLLHSDLNNIT 36 (118)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~ 36 (118)
+|+|.|.|.++|+.++..
T Consensus 25 ~g~sHf~i~IvS~~F~g~ 42 (76)
T PF01722_consen 25 GGGSHFKIIIVSDEFEGK 42 (76)
T ss_dssp CSSSEEEEEEECGGGTTS
T ss_pred CCCceEEEEEEcHHhCCC
Confidence 679999999999988765
No 218
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=23.41 E-value=2.5e+02 Score=20.71 Aligned_cols=43 Identities=12% Similarity=0.080 Sum_probs=27.4
Q ss_pred HHHHHhhcCCCCCCCEEEeChh---HHHHHHHHHHHHhhhhHHHHH
Q psy9123 70 CLSSHLDNSSLTQIPMFFISPV---ADISLAYSNILAEWNTKVEVQ 112 (118)
Q Consensus 70 ~L~~l~~~~~Lp~iPIyldSPm---A~~al~~~~~~~Ewl~~~~~~ 112 (118)
.+.+.+..-+++.-|||++|.. ..+..++-+.+..-+.++++.
T Consensus 144 ~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~ 189 (197)
T cd04104 144 NCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRH 189 (197)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHH
Confidence 3333444334666799999987 456666666666667766653
No 219
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=23.37 E-value=1.5e+02 Score=18.84 Aligned_cols=20 Identities=5% Similarity=-0.119 Sum_probs=11.3
Q ss_pred eEEEcCCchHHHHHHHHHHH
Q psy9123 53 SVLVPCYPSGVIYDLFECLS 72 (118)
Q Consensus 53 ~VLIPaFavGRtqELL~~L~ 72 (118)
.|++--.+...+.+++..+.
T Consensus 35 iivvddgs~d~t~~~~~~~~ 54 (291)
T COG0463 35 IIVVDDGSTDGTTEIAIEYG 54 (291)
T ss_pred EEEEeCCCCCChHHHHHHHh
Confidence 55555555666655555544
No 220
>COG1806 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.25 E-value=4.5e+02 Score=22.03 Aligned_cols=79 Identities=16% Similarity=0.063 Sum_probs=49.8
Q ss_pred CceeEEEEccccchhhHHHHHHHHHHHHhcCC--eEEEcCCchHHH-HHHHHHHH-HHhhcCCCCCCCEEEeChhHHHHH
Q psy9123 21 QSKIAVLLHSDLNNITCDEKWMRDIKNQNESG--SVLVPCYPSGVI-YDLFECLS-SHLDNSSLTQIPMFFISPVADISL 96 (118)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG--~VLIPaFavGRt-qELL~~L~-~l~~~~~Lp~iPIyldSPmA~~al 96 (118)
.+++.|-++||-...|.+-+.+++..-...-. ....| |+--|- -.+.+.+. .-.+.+.+ .|..|+|-++..+.
T Consensus 1 ~~~~~v~~VSDsTGeTae~~~rA~laQF~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~iv--~~tiv~~~v~~~l~ 77 (273)
T COG1806 1 STKRHVFYVSDSTGETAELIGRAALAQFPGVKFKAITHP-FPDIRSKAQLVEVLILAAYAPGIV--RPTIVDSEVRPELR 77 (273)
T ss_pred CCcceEEEEeCChHHHHHHHHHHHHHhcCCCCCCceeee-cccchhHHHHHHHHHHHhhcCCce--EEEEehHHhHHHHH
Confidence 36889999999999998877777665555333 34444 343332 23333333 23444433 78999999998886
Q ss_pred HHHHHH
Q psy9123 97 AYSNIL 102 (118)
Q Consensus 97 ~~~~~~ 102 (118)
+.....
T Consensus 78 ~~~~~~ 83 (273)
T COG1806 78 EICAEA 83 (273)
T ss_pred HHHHHc
Confidence 665543
No 221
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=23.21 E-value=69 Score=24.55 Aligned_cols=35 Identities=14% Similarity=0.045 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHH
Q psy9123 36 TCDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSS 73 (118)
Q Consensus 36 ~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~ 73 (118)
..+++.+.+.+..++ |. .-++++||+..-+..+.+
T Consensus 22 ~~~~~~~~i~~~~~~-gi--~fv~aTGR~~~~~~~~~~ 56 (249)
T TIGR01485 22 ALLRLNALLEDHRGE-DS--LLVYSTGRSPHSYKELQK 56 (249)
T ss_pred HHHHHHHHHHHhhcc-Cc--eEEEEcCCCHHHHHHHHh
Confidence 346777777764444 44 344578999887776644
No 222
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=23.00 E-value=3.6e+02 Score=20.79 Aligned_cols=74 Identities=11% Similarity=0.055 Sum_probs=52.2
Q ss_pred HHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHHhhcCC---------------C---CCCCEEEeChhHHHHHHHHHH
Q psy9123 40 KWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSHLDNSS---------------L---TQIPMFFISPVADISLAYSNI 101 (118)
Q Consensus 40 L~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l~~~~~---------------L---p~iPIyldSPmA~~al~~~~~ 101 (118)
+.+.+. +.-+.|-|+|=....|++.+++..+....+.|- + .++.|++-++-...+-+.--.
T Consensus 99 f~~ql~-~~~~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~s~l~~l~~~~D~~i~ip~~~~~~v~e~h~~ 177 (196)
T PRK10886 99 YAKQVR-ALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSHRSARIQEMHML 177 (196)
T ss_pred HHHHHH-HcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhccccCCEEEEcCCCchHHHHHHHHH
Confidence 344444 666777788888889999999999988777662 2 256666666666677666666
Q ss_pred HHhhhhHHHHHhh
Q psy9123 102 LAEWNTKVEVQIL 114 (118)
Q Consensus 102 ~~Ewl~~~~~~~L 114 (118)
...|+++...+.+
T Consensus 178 i~H~l~~~v~~~~ 190 (196)
T PRK10886 178 TVNCLCDLIDNTL 190 (196)
T ss_pred HHHHHHHHHHHHh
Confidence 7778887776555
No 223
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=22.75 E-value=1.5e+02 Score=20.00 Aligned_cols=66 Identities=18% Similarity=0.141 Sum_probs=34.1
Q ss_pred ceeEEEEccccchhhHHHHHHHHHHHHhcCCeEEEcCCc----hHH-HHHHHHHHHHHhhcCCCCCCCEEEeCh
Q psy9123 22 SKIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLVPCYP----SGV-IYDLFECLSSHLDNSSLTQIPMFFISP 90 (118)
Q Consensus 22 ~~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLIPaFa----vGR-tqELL~~L~~l~~~~~Lp~iPIyldSP 90 (118)
.++.|..-...+..... . .|.+.+++...+|+-..+ .+- .+|+-+.+....+.++..=+||+++.-
T Consensus 29 ~~~~v~~d~~~~~~~~~--~-~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a~~~~~~~~~~~iIPI~~~~~ 99 (140)
T smart00255 29 YGLCVFIDDFEPGGGDL--E-EIDEAIEKSRIAIVVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVI 99 (140)
T ss_pred CCcEEEecCcccccchH--H-HHHHHHHHCcEEEEEECcccccChhHHHHHHHHHHHHHHcCCCeEEEEEEecC
Confidence 35666554443332222 2 666666655555444222 222 457776666555434344488888853
No 224
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=22.62 E-value=2.5e+02 Score=22.27 Aligned_cols=53 Identities=13% Similarity=0.285 Sum_probs=0.0
Q ss_pred eeEEEEccccchhhHHHHHHHHHHHHhcCCeEEE-cCCchHH--HHHHHHHHHHHhhc
Q psy9123 23 KIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLV-PCYPSGV--IYDLFECLSSHLDN 77 (118)
Q Consensus 23 ~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLI-PaFavGR--tqELL~~L~~l~~~ 77 (118)
+..|++.++ .-+.++..++...+-+.|-.+++ |-|++|. .+.++....+++..
T Consensus 92 g~~vVigtt--g~~~e~~~~l~~aA~~~g~~v~~a~NfSlGv~ll~~~~~~aa~~l~~ 147 (266)
T TIGR00036 92 GVRLVVGTT--GFSEEDKQELADLAEKAGIAAVIAPNFSIGVNLMFKLLEKAAKYLGD 147 (266)
T ss_pred CCCEEEECC--CCCHHHHHHHHHHHhcCCccEEEECcccHHHHHHHHHHHHHHHhccC
No 225
>KOG3191|consensus
Probab=22.62 E-value=1.2e+02 Score=24.38 Aligned_cols=70 Identities=13% Similarity=0.075 Sum_probs=42.8
Q ss_pred CCCchhHHHHhhcccCCCceeEEEEccccchhh-----------------------HHHHHHHHHHHHhcCCeEEEcCCc
Q psy9123 4 NGDNLDSLIASTASSNGQSKIAVLLHSDLNNIT-----------------------CDEKWMRDIKNQNESGSVLVPCYP 60 (118)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~eL~~~I~~Tl~~GG~VLIPaFa 60 (118)
|+-++|..+++-+++--..|.|||+.----.-+ .++|...+.+-+...|...+-+-.
T Consensus 91 n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~ 170 (209)
T KOG3191|consen 91 NRVHIDVVRTDLLSGLRNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALR 170 (209)
T ss_pred cCCccceeehhHHhhhccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehh
Confidence 677788888888888778999999853221111 234444444455555555555555
Q ss_pred hHHHHHHHHHHHH
Q psy9123 61 SGVIYDLFECLSS 73 (118)
Q Consensus 61 vGRtqELL~~L~~ 73 (118)
.-+-+|++..++.
T Consensus 171 ~N~p~ei~k~l~~ 183 (209)
T KOG3191|consen 171 ANKPKEILKILEK 183 (209)
T ss_pred hcCHHHHHHHHhh
Confidence 5555555554443
No 226
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=22.60 E-value=1.3e+02 Score=24.75 Aligned_cols=38 Identities=16% Similarity=0.119 Sum_probs=25.2
Q ss_pred EEEEccccc---hhhHHHHHHHHHHHHhcCCe----EEEcCCchHH
Q psy9123 25 AVLLHSDLN---NITCDEKWMRDIKNQNESGS----VLVPCYPSGV 63 (118)
Q Consensus 25 ~~~~~~~~~---~~~~~eL~~~I~~Tl~~GG~----VLIPaFavGR 63 (118)
||++..++. ++..-||+ .+.+++++.|. ++||-|+-.|
T Consensus 40 ~V~iv~s~~~p~nd~l~eLl-~~~~a~r~~~a~~i~~ViPYl~YsR 84 (302)
T PLN02369 40 DVFLVQPTCPPANENLMELL-IMIDACRRASAKRITAVIPYFGYAR 84 (302)
T ss_pred eEEEEecCCCCcchHHHHHH-HHHHHHHHcCCCeEEEEeecccccc
Confidence 677666653 33444555 45567777774 8999998776
No 227
>PRK09630 DNA topoisomerase IV subunit A; Provisional
Probab=22.46 E-value=83 Score=28.27 Aligned_cols=45 Identities=27% Similarity=0.290 Sum_probs=39.1
Q ss_pred cCCCceeEEEEccccchhhHHHHHHHHHHHHhcCCeEEEcCCchH
Q psy9123 18 SNGQSKIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLVPCYPSG 62 (118)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLIPaFavG 62 (118)
-||.+-|+|=.++.-++-...|+++.+..-++..--.+.|-||.|
T Consensus 150 vNGa~GIAvG~AT~IpPHNl~Evida~i~~L~~~~~~~~PDFptG 194 (479)
T PRK09630 150 LHGVDGIAVGMTTKIFPHNFCELLEAQIAILNDQPFTLLPDFPSG 194 (479)
T ss_pred ccCCceeeeccccCCCCCCHHHHHHHHHHHhCCCCCcCCcCCCCC
Confidence 489999999999999999999999999988877766677777765
No 228
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=22.31 E-value=1.1e+02 Score=25.93 Aligned_cols=37 Identities=5% Similarity=0.032 Sum_probs=27.3
Q ss_pred ceeEEEEccccch----hhHHHHHHHHHHHHhcCCeEEEcC
Q psy9123 22 SKIAVLLHSDLNN----ITCDEKWMRDIKNQNESGSVLVPC 58 (118)
Q Consensus 22 ~~~~~~~~~~~~~----~~~~eL~~~I~~Tl~~GG~VLIPa 58 (118)
.+||+++.....+ ...+.+.+.+.+.++.||.++|=.
T Consensus 227 ~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 227 GQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred CCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 3699887655433 334678888999999999999843
No 229
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=22.20 E-value=3.6e+02 Score=21.93 Aligned_cols=12 Identities=25% Similarity=0.454 Sum_probs=6.1
Q ss_pred CeEEEcCCchHH
Q psy9123 52 GSVLVPCYPSGV 63 (118)
Q Consensus 52 G~VLIPaFavGR 63 (118)
+..+.|.++.||
T Consensus 194 ~i~i~p~~~~~~ 205 (318)
T TIGR03470 194 GMTISPGYAYEK 205 (318)
T ss_pred EEEEecCccccc
Confidence 445555555443
No 230
>PRK06936 type III secretion system ATPase; Provisional
Probab=22.08 E-value=3.7e+02 Score=23.72 Aligned_cols=77 Identities=14% Similarity=0.101 Sum_probs=39.0
Q ss_pred ceeEEEEccccchhhHHHHHHHHHHHHhcCC---eEEEcCC----chHHHHHHH--HHHHHHhhcCCCCCCCEEEeChhH
Q psy9123 22 SKIAVLLHSDLNNITCDEKWMRDIKNQNESG---SVLVPCY----PSGVIYDLF--ECLSSHLDNSSLTQIPMFFISPVA 92 (118)
Q Consensus 22 ~~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG---~VLIPaF----avGRtqELL--~~L~~l~~~~~Lp~iPIyldSPmA 92 (118)
.+.||.|.. +..+.-+|..+.+.+.+...| +|+|-+- |..|..-.. -.+.+|+++.+- ++-+++||
T Consensus 186 ~~~dv~V~~-liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~a~tiAEyfrd~G~-~Vll~~Ds--- 260 (439)
T PRK06936 186 AEVDVTVLA-LIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAEYFRDQGK-RVLLLMDS--- 260 (439)
T ss_pred CCCCEEEEE-EEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCC-CEEEeccc---
Confidence 334443333 333333444555555555444 4444333 344443333 334566655443 57777777
Q ss_pred HHHHHHHHHHHhh
Q psy9123 93 DISLAYSNILAEW 105 (118)
Q Consensus 93 ~~al~~~~~~~Ew 105 (118)
.|.|++.++|.
T Consensus 261 --lTR~A~A~REi 271 (439)
T PRK06936 261 --VTRFARAQREI 271 (439)
T ss_pred --hhHHHHHHHHH
Confidence 66777777765
No 231
>PRK14873 primosome assembly protein PriA; Provisional
Probab=22.05 E-value=3e+02 Score=25.40 Aligned_cols=61 Identities=10% Similarity=0.038 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHHhhcCCCCCCCEEEeChhHHHHHHHHHHHHhhhh
Q psy9123 38 DEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSHLDNSSLTQIPMFFISPVADISLAYSNILAEWNT 107 (118)
Q Consensus 38 ~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l~~~~~Lp~iPIyldSPmA~~al~~~~~~~Ewl~ 107 (118)
+-+++.|.++++.|+.+||=.--.+-|.+++..|...+.... ...+-|-++.. +.|..|+.
T Consensus 175 evyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~----v~~lhS~l~~~-----~R~~~w~~ 235 (665)
T PRK14873 175 RRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGD----VAVLSAGLGPA-----DRYRRWLA 235 (665)
T ss_pred HHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCc----EEEECCCCCHH-----HHHHHHHH
Confidence 457789999999999999988899999999999988775222 13455555543 46667754
No 232
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=21.97 E-value=1.2e+02 Score=23.51 Aligned_cols=53 Identities=11% Similarity=0.174 Sum_probs=31.3
Q ss_pred CCCCchhHHHHhhcccCCCceeEEEEccccchhhHHHHHHHHHHHHhcCCeEEEc
Q psy9123 3 QNGDNLDSLIASTASSNGQSKIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLVP 57 (118)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLIP 57 (118)
.+||.++.|=.-. ......+||.+..--- .+...+..+.+.+-++.||.+++-
T Consensus 102 ~~gda~~~l~~l~-~~~~~~~fD~VFiDa~-K~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 102 IEGDALEVLPELA-NDGEEGQFDFVFIDAD-KRNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp EES-HHHHHHHHH-HTTTTTSEEEEEEEST-GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEeccHhhHHHHH-hccCCCceeEEEEccc-ccchhhHHHHHhhhccCCeEEEEc
Confidence 3566666543222 2222468998766443 444455555666788999988874
No 233
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=21.97 E-value=92 Score=25.13 Aligned_cols=41 Identities=5% Similarity=0.050 Sum_probs=31.1
Q ss_pred eeEEEEccccch----hhHHHHHHHHHHHHhcCCeEEEcCCchHH
Q psy9123 23 KIAVLLHSDLNN----ITCDEKWMRDIKNQNESGSVLVPCYPSGV 63 (118)
Q Consensus 23 ~~~~~~~~~~~~----~~~~eL~~~I~~Tl~~GG~VLIPaFavGR 63 (118)
+||.++.-...| ....++.+.+.+.++.||.+++=++....
T Consensus 127 ~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~ 171 (273)
T PF02353_consen 127 KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRD 171 (273)
T ss_dssp S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--
T ss_pred CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 888888777776 44688999999999999999976555444
No 234
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=21.96 E-value=84 Score=23.16 Aligned_cols=39 Identities=18% Similarity=0.087 Sum_probs=25.5
Q ss_pred ccCCCceeEEEEccccchhhHHHHHHHHHHHHhcCCeEEEcCCchH
Q psy9123 17 SSNGQSKIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLVPCYPSG 62 (118)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLIPaFavG 62 (118)
+.++++-.-+.++.| .+-..+.+..+.||+|+-|.++++
T Consensus 66 ~~p~~~~~~iy~~v~-------did~~l~rv~~~GG~V~~p~~~~p 104 (127)
T COG3324 66 SPPGGGGWVIYFAVD-------DIDATLERVVAAGGKVLRPKTEFP 104 (127)
T ss_pred CCCCCCCEEEEEecC-------ChHHHHHHHHhcCCeEEecccccC
Confidence 344444455555533 344566778899999999988764
No 235
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=21.95 E-value=1.4e+02 Score=23.14 Aligned_cols=35 Identities=9% Similarity=0.196 Sum_probs=24.2
Q ss_pred ceeEEEEccccch--hhHHHHHHHHHHHHhcCCeEEE
Q psy9123 22 SKIAVLLHSDLNN--ITCDEKWMRDIKNQNESGSVLV 56 (118)
Q Consensus 22 ~~~~~~~~~~~~~--~~~~eL~~~I~~Tl~~GG~VLI 56 (118)
..||+++...... ....++.+.+.+.++.||.+++
T Consensus 145 ~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i 181 (272)
T PRK11873 145 NSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAI 181 (272)
T ss_pred CceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEE
Confidence 3699887543211 1134567778899999999998
No 236
>PRK09694 helicase Cas3; Provisional
Probab=21.95 E-value=1.8e+02 Score=27.80 Aligned_cols=37 Identities=19% Similarity=0.145 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHH
Q psy9123 38 DEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSH 74 (118)
Q Consensus 38 ~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l 74 (118)
+++.+.|.+.++.||+|+|=+..+.++|++-..|.+.
T Consensus 547 ~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~ 583 (878)
T PRK09694 547 LTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKEL 583 (878)
T ss_pred HHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhh
Confidence 5677778888899999999999999999999888754
No 237
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=21.92 E-value=3.8e+02 Score=20.83 Aligned_cols=55 Identities=9% Similarity=-0.077 Sum_probs=22.6
Q ss_pred eeEEEEccccchhhHHHH-HHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHHhhc
Q psy9123 23 KIAVLLHSDLNNITCDEK-WMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSHLDN 77 (118)
Q Consensus 23 ~~~~~~~~~~~~~~~~eL-~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l~~~ 77 (118)
|+++|+.....+....+. .+-+.++-+..|.=+.-.-++....+....+.++.++
T Consensus 1 kva~l~~g~~~D~~~n~~~~~G~~~~~~~~gv~~~~~e~~~~~~~~~~~i~~~~~~ 56 (258)
T cd06353 1 KVAFVYVGPIGDQGWNYAHDEGRKAAEKALGVEVTYVENVPEGADAERVLRELAAQ 56 (258)
T ss_pred CEEEEEeCCCCccchhHHHHHHHHHHHHhcCCeEEEEecCCchHhHHHHHHHHHHc
Confidence 445555544444444433 4444444433333222222222233444444444444
No 238
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=21.76 E-value=1.2e+02 Score=27.79 Aligned_cols=44 Identities=18% Similarity=0.129 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHHhhcCCCCCCCEEEeC
Q psy9123 39 EKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSHLDNSSLTQIPMFFIS 89 (118)
Q Consensus 39 eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l~~~~~Lp~iPIyldS 89 (118)
+....+.+.++.|++|+|=+.+|.|+|++-..|..-.. ++|+.+
T Consensus 428 ~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~-------~v~LlH 471 (733)
T COG1203 428 ELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGP-------KVLLLH 471 (733)
T ss_pred hhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCC-------CEEEEe
Confidence 56778888999999999999999999999877753321 576654
No 239
>PLN02360 probable 6-phosphogluconolactonase
Probab=21.55 E-value=1.5e+02 Score=23.73 Aligned_cols=37 Identities=11% Similarity=0.110 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHH
Q psy9123 37 CDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSH 74 (118)
Q Consensus 37 ~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l 74 (118)
.+.+.+.+.++++++|.+-|. .+-|.+-.+++.|.+.
T Consensus 27 a~~i~~~~~~a~~~~~~~~la-lsGGS~~~~~~~L~~~ 63 (268)
T PLN02360 27 AEYIAELSEASVKERGVFAIA-LSGGSLISFMGKLCEA 63 (268)
T ss_pred HHHHHHHHHHHHHhCCcEEEE-ECCCCHHHHHHHHhcc
Confidence 344555555666777876665 3666677777777543
No 240
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=21.48 E-value=2.2e+02 Score=21.28 Aligned_cols=28 Identities=14% Similarity=-0.029 Sum_probs=12.5
Q ss_pred ccchhhHHHHHHHHHHHHhcCCeEEEcC
Q psy9123 31 DLNNITCDEKWMRDIKNQNESGSVLVPC 58 (118)
Q Consensus 31 ~~~~~~~~eL~~~I~~Tl~~GG~VLIPa 58 (118)
.+..+..+.+.+.+.+..++|+.|||-+
T Consensus 167 ~LD~~~~~~l~~~l~~~~~~~~tiii~s 194 (214)
T PRK13543 167 NLDLEGITLVNRMISAHLRGGGAALVTT 194 (214)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 3334444444444444444444444433
No 241
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=21.45 E-value=1.3e+02 Score=26.07 Aligned_cols=50 Identities=18% Similarity=0.091 Sum_probs=35.5
Q ss_pred cccCCCceeEEEEccccchhhHHHHHHHHHHHHhcCCeEEEcCCchHHHHH
Q psy9123 16 ASSNGQSKIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLVPCYPSGVIYD 66 (118)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqE 66 (118)
-+.|+.+|.+||++++-.+.... ..++.+.+==+-+.+=|=+|+.-|+..
T Consensus 131 ~~~~~~e~v~Vll~AtrkE~v~~-ri~a~~~AGl~~~vlDV~~fAl~ra~~ 180 (354)
T COG4972 131 PSANEPEKVQVLLVATRKEVVES-RIDAFELAGLEPKVLDVESFALLRAYR 180 (354)
T ss_pred cccCCCccEEEEEEEeehhhhHH-HHHHHHHcCCCceEEehHHHHHHHHHH
Confidence 35677799999999987766533 344444443334466788999999988
No 242
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=21.36 E-value=1.5e+02 Score=24.76 Aligned_cols=39 Identities=13% Similarity=0.072 Sum_probs=24.8
Q ss_pred EEEEcccc--c-hhhHHHHHHHHHHHHhcCCe----EEEcCCchHHH
Q psy9123 25 AVLLHSDL--N-NITCDEKWMRDIKNQNESGS----VLVPCYPSGVI 64 (118)
Q Consensus 25 ~~~~~~~~--~-~~~~~eL~~~I~~Tl~~GG~----VLIPaFavGRt 64 (118)
||++..++ + ++..-||+ .+.+++++.|. ++||.|+-.|-
T Consensus 58 dV~ii~s~~~~~nd~l~eLl-l~~~alr~~~a~~i~lViPYl~YaRQ 103 (323)
T PRK02458 58 DIYIIQSTSFPVNDHLWELL-IMIDACKRASANTVNVVLPYFGYARQ 103 (323)
T ss_pred eEEEEecCCCCCchHHHHHH-HHHHHHHHcCCceEEEEEeccccchh
Confidence 46555544 2 34455665 34557777775 89999998773
No 243
>PRK09966 putative inner membrane diguanylate cyclase; Provisional
Probab=21.28 E-value=1.5e+02 Score=23.97 Aligned_cols=56 Identities=13% Similarity=0.000 Sum_probs=34.2
Q ss_pred CCCceeEEEEccccchhhHHHHHHHHHHHHhc-----C----------CeEEEcCCchHHHHHHHHHHHHHhh
Q psy9123 19 NGQSKIAVLLHSDLNNITCDEKWMRDIKNQNE-----S----------GSVLVPCYPSGVIYDLFECLSSHLD 76 (118)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~eL~~~I~~Tl~~-----G----------G~VLIPaFavGRtqELL~~L~~l~~ 76 (118)
-|+..|.+++-....++..+++++.+.+.+++ + |..+.|-.. -..+|+...+..+.
T Consensus 325 ~~~deF~ill~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~siG~~~~~~~~--~~~~ll~~Ad~al~ 395 (407)
T PRK09966 325 LGGDEFAMVLYDVQSESEVQQICSALTQIFNLPFDLHNGHQTTMTLSIGYAMTIEHA--SAEKLQELADHNMY 395 (407)
T ss_pred EccceEEEEEcCCCCHHHHHHHHHHHHHHHhCCeeecCCcEEEEEEEEEEEeCCCCC--CHHHHHHHHHHHHH
Confidence 47889999997655555667777777776643 3 333433332 24666666665543
No 244
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=21.25 E-value=3.1e+02 Score=19.36 Aligned_cols=19 Identities=16% Similarity=0.100 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHhhcCCCC
Q psy9123 63 VIYDLFECLSSHLDNSSLT 81 (118)
Q Consensus 63 RtqELL~~L~~l~~~~~Lp 81 (118)
+..++-..+.++-++.+++
T Consensus 122 ~~~~~n~~~~~~a~~~~v~ 140 (183)
T cd04501 122 KLKSLNRWLKDYARENGLL 140 (183)
T ss_pred HHHHHHHHHHHHHHHcCCC
Confidence 4444444555555544443
No 245
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=21.15 E-value=1.3e+02 Score=22.97 Aligned_cols=38 Identities=8% Similarity=-0.090 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHH
Q psy9123 37 CDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSH 74 (118)
Q Consensus 37 ~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l 74 (118)
-.++.+.+.+.++.||.+-+=++--.-+.+.+..+...
T Consensus 112 ~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~ 149 (195)
T PF02390_consen 112 NPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEES 149 (195)
T ss_dssp SHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence 36899999999999999999999999999999999874
No 246
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=21.09 E-value=2.8e+02 Score=18.79 Aligned_cols=30 Identities=7% Similarity=-0.034 Sum_probs=18.2
Q ss_pred EEEccccchhhHHHHHHHHHHHHhcCCeEE
Q psy9123 26 VLLHSDLNNITCDEKWMRDIKNQNESGSVL 55 (118)
Q Consensus 26 ~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VL 55 (118)
||++-|..+.+...|..++..+-+.|+.+.
T Consensus 2 ILVavD~S~~s~~al~~a~~~a~~~~~~l~ 31 (146)
T cd01989 2 VAVAVDKDKKSKNALKWALDNLATKGQTIV 31 (146)
T ss_pred EEEEecCccccHHHHHHHHHhccCCCCcEE
Confidence 566677766666666666655555555553
No 247
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=21.08 E-value=2e+02 Score=19.40 Aligned_cols=55 Identities=11% Similarity=-0.043 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHHhhcCCCCCCCEEEeChhH
Q psy9123 36 TCDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSHLDNSSLTQIPMFFISPVA 92 (118)
Q Consensus 36 ~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l~~~~~Lp~iPIyldSPmA 92 (118)
..+.+.+.+.+.++.|-+++|-..-..+ +-...+.+..++.+.+-.-|+++.|-.
T Consensus 55 ~~~~~~~~~~~~l~~g~~~vvd~~~~~~--~~r~~~~~~~~~~~~~~~~v~l~~~~~ 109 (143)
T PF13671_consen 55 AYQILNAAIRKALRNGNSVVVDNTNLSR--EERARLRELARKHGYPVRVVYLDAPEE 109 (143)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEESS--SH--HHHHHHHHHHHHCTEEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHcCCCceeccCcCCH--HHHHHHHHHHHHcCCeEEEEEEECCHH
Confidence 3445567777888999999996444333 223444445555544445566665543
No 248
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=21.00 E-value=2.8e+02 Score=22.30 Aligned_cols=33 Identities=9% Similarity=-0.160 Sum_probs=23.6
Q ss_pred chhhHHHHHHHHHHHHhcCCeEEEcCCchHHHH
Q psy9123 33 NNITCDEKWMRDIKNQNESGSVLVPCYPSGVIY 65 (118)
Q Consensus 33 ~~~~~~eL~~~I~~Tl~~GG~VLIPaFavGRtq 65 (118)
..+....+.+-+.+.++.||.++|-++...-..
T Consensus 152 ~~~e~~~~L~~i~~~L~pgG~~lig~d~~~~~~ 184 (301)
T TIGR03438 152 TPEEAVAFLRRIRQLLGPGGGLLIGVDLVKDPA 184 (301)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEeccCCCCHH
Confidence 344455678888899999999998765544443
No 249
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=20.98 E-value=1.3e+02 Score=21.79 Aligned_cols=36 Identities=6% Similarity=0.092 Sum_probs=24.8
Q ss_pred CceeEEEEccc----cch---hhHHHHHHHHHHHHhcCCeEEE
Q psy9123 21 QSKIAVLLHSD----LNN---ITCDEKWMRDIKNQNESGSVLV 56 (118)
Q Consensus 21 ~~~~~~~~~~~----~~~---~~~~eL~~~I~~Tl~~GG~VLI 56 (118)
..+||+++.-- ..+ +..+++.+...+.++.||.+++
T Consensus 96 ~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 96 DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFL 138 (170)
T ss_dssp TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEE
Confidence 47999988742 222 3456777777778999999965
No 250
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=20.88 E-value=1.3e+02 Score=19.69 Aligned_cols=38 Identities=5% Similarity=0.009 Sum_probs=25.2
Q ss_pred CCCceeEEEEccccch----------hhHHHHHHHHHHHHhcCCeEEE
Q psy9123 19 NGQSKIAVLLHSDLNN----------ITCDEKWMRDIKNQNESGSVLV 56 (118)
Q Consensus 19 ~~~~~~~~~~~~~~~~----------~~~~eL~~~I~~Tl~~GG~VLI 56 (118)
....++|+++..--.. +...++.+.+.+.++.||.+.+
T Consensus 66 ~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 66 LPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp CTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 3457899988643222 2456788888889999998765
No 251
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=20.80 E-value=1.7e+02 Score=24.08 Aligned_cols=39 Identities=13% Similarity=0.100 Sum_probs=25.5
Q ss_pred EEEEccccc---hhhHHHHHHHHHHHHhcCCe----EEEcCCchHHH
Q psy9123 25 AVLLHSDLN---NITCDEKWMRDIKNQNESGS----VLVPCYPSGVI 64 (118)
Q Consensus 25 ~~~~~~~~~---~~~~~eL~~~I~~Tl~~GG~----VLIPaFavGRt 64 (118)
||++..++. ++..-||+ .+.+++++.|. ++||-||=.|-
T Consensus 49 ~V~ii~s~~~~~nd~l~eLl-l~~~alr~~ga~~i~lViPYl~YsRQ 94 (309)
T PRK01259 49 DVFIIQSTCAPTNDNLMELL-IMIDALKRASAGRITAVIPYFGYARQ 94 (309)
T ss_pred EEEEECCCCCCCcHHHHHHH-HHHHHHHHcCCceEEEEeeccccchh
Confidence 676666642 34455655 34557777774 89999998774
No 252
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=20.79 E-value=2.9e+02 Score=18.90 Aligned_cols=56 Identities=14% Similarity=0.154 Sum_probs=32.5
Q ss_pred cCCeEEEc-CCchHHHHHHHHHHHHHhhcCCCCCCCEEEeChhHHHHHHHHHHHHhhhh
Q psy9123 50 ESGSVLVP-CYPSGVIYDLFECLSSHLDNSSLTQIPMFFISPVADISLAYSNILAEWNT 107 (118)
Q Consensus 50 ~GG~VLIP-aFavGRtqELL~~L~~l~~~~~Lp~iPIyldSPmA~~al~~~~~~~Ewl~ 107 (118)
+|++++|- ..-.|+|.-.+..+.+.+.++ ++-.+.+..|.-.-+.++++.+.+++.
T Consensus 13 ~~~~~li~aptGsGKT~~~~~~~l~~~~~~--~~~~~lii~P~~~l~~q~~~~~~~~~~ 69 (169)
T PF00270_consen 13 SGKNVLISAPTGSGKTLAYILPALNRLQEG--KDARVLIIVPTRALAEQQFERLRKFFS 69 (169)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTT--SSSEEEEEESSHHHHHHHHHHHHHHTT
T ss_pred cCCCEEEECCCCCccHHHHHHHHHhhhccC--CCceEEEEeeccccccccccccccccc
Confidence 45554443 344677777766666555554 223567777766666666666655543
No 253
>COG2746 Aminoglycoside N3'-acetyltransferase [Defense mechanisms]
Probab=20.74 E-value=79 Score=26.13 Aligned_cols=34 Identities=18% Similarity=0.306 Sum_probs=20.8
Q ss_pred EEEccccch---------hhHHHHHHHHHHHHhcCCeEEEcCC
Q psy9123 26 VLLHSDLNN---------ITCDEKWMRDIKNQNESGSVLVPCY 59 (118)
Q Consensus 26 ~~~~~~~~~---------~~~~eL~~~I~~Tl~~GG~VLIPaF 59 (118)
|+|||.+-. ...+.|.+..-.++..-|+++.|+|
T Consensus 32 v~vHssl~~~g~~~gg~~~vi~~l~~~~~~vV~~egtlimPt~ 74 (251)
T COG2746 32 VIVHSSLSSFGWVEGGRNTVLQALLDEFKGVVGPEGTLIMPTF 74 (251)
T ss_pred EEEehhhhhhccccCchHHHHHHHHHHhhceeccCccEEcccc
Confidence 667776643 2233444444447888999999943
No 254
>COG1489 SfsA DNA-binding protein, stimulates sugar fermentation [General function prediction only]
Probab=20.71 E-value=39 Score=27.59 Aligned_cols=58 Identities=21% Similarity=0.143 Sum_probs=47.6
Q ss_pred CCCceeEEEEccccchhhHHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHHhhcCC
Q psy9123 19 NGQSKIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSHLDNSS 79 (118)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l~~~~~ 79 (118)
-|.|.||.|+-.+-..+..-|... =|+..+|.-+.|=-|..|=|.=|..|.++.++|.
T Consensus 111 yGnSRiDfll~~~~~~~~~vEVK~---vtL~~~~~a~FPDApT~RG~KHLreL~~~~~~G~ 168 (235)
T COG1489 111 YGNSRIDFLLDDDERPDCYVEVKS---VTLVENGVAMFPDAPTARGQKHLRELERLAKEGY 168 (235)
T ss_pred ccceeEEEEEcCCCCCceEEEEee---EEEeeCCEEECCCCcchhhHHHHHHHHHHHHcCC
Confidence 367999999999876555444332 2788999999999999999999999999999873
No 255
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=20.67 E-value=3.7e+02 Score=20.74 Aligned_cols=45 Identities=9% Similarity=-0.048 Sum_probs=23.3
Q ss_pred HhhcccCCCceeEEEEccccchhhHHHHHHHHHHH--HhcCCeEEEcCCc
Q psy9123 13 ASTASSNGQSKIAVLLHSDLNNITCDEKWMRDIKN--QNESGSVLVPCYP 60 (118)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~I~~T--l~~GG~VLIPaFa 60 (118)
...+.++ +..+++++.... .+... -.+.+.+. .+-.|-++.|+.+
T Consensus 22 ~~~a~~~-~~g~~~~~~~~~-~~~~~-q~~~i~~l~~~~vdgiii~~~~~ 68 (303)
T cd01539 22 EDIQKEN-GGKVEFTFYDAK-NNQST-QNEQIDTALAKGVDLLAVNLVDP 68 (303)
T ss_pred HHHHHhh-CCCeeEEEecCC-CCHHH-HHHHHHHHHHcCCCEEEEecCch
Confidence 3445554 245777766432 22222 23344443 3567888888774
No 256
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=20.59 E-value=1.5e+02 Score=25.91 Aligned_cols=43 Identities=16% Similarity=0.035 Sum_probs=34.6
Q ss_pred chhhHHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHHh
Q psy9123 33 NNITCDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSHL 75 (118)
Q Consensus 33 ~~~~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l~ 75 (118)
..+...+.+++|.+..+.|..|++.+.|.|++=+.|..+.+..
T Consensus 15 ~~e~i~~va~iv~~~~~~g~~vVVVvSA~~~vTd~Lv~~a~~~ 57 (447)
T COG0527 15 DAERILRVADIVKEDSEEGVKVVVVVSAMGGVTDLLVALAEGA 57 (447)
T ss_pred CHHHHHHHHHHHHhhhhcCCcEEEEECCCCCchHHHHHHHhhc
Confidence 3566788899999999999999999999997666666665543
No 257
>PRK13937 phosphoheptose isomerase; Provisional
Probab=20.53 E-value=3.7e+02 Score=20.03 Aligned_cols=32 Identities=19% Similarity=0.231 Sum_probs=26.8
Q ss_pred HHhcCCeEEEcCCchHHHHHHHHHHHHHhhcC
Q psy9123 47 NQNESGSVLVPCYPSGVIYDLFECLSSHLDNS 78 (118)
Q Consensus 47 Tl~~GG~VLIPaFavGRtqELL~~L~~l~~~~ 78 (118)
+.-+.|.++|-..-.|++.+++..+....+.|
T Consensus 102 ~~~~~~Dl~i~iS~sG~t~~~~~~~~~ak~~g 133 (188)
T PRK13937 102 ALGRPGDVLIGISTSGNSPNVLAALEKARELG 133 (188)
T ss_pred hhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCC
Confidence 34566788888888999999999999888876
No 258
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=20.47 E-value=1.6e+02 Score=23.78 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=25.4
Q ss_pred EEEEccccc--hhhHHHHHHHHHHHHhcCCe----EEEcCCchHHH
Q psy9123 25 AVLLHSDLN--NITCDEKWMRDIKNQNESGS----VLVPCYPSGVI 64 (118)
Q Consensus 25 ~~~~~~~~~--~~~~~eL~~~I~~Tl~~GG~----VLIPaFavGRt 64 (118)
||++.+... ++..-||+ .+.+++++.|. ++||-||=.|-
T Consensus 48 ~v~i~~~~~~~~d~l~ell-~~~~alr~~ga~~i~~v~PY~~YaRq 92 (285)
T PRK00934 48 DVVIISTTYPQDENLVELL-LLIDALRDEGAKSITLVIPYLGYARQ 92 (285)
T ss_pred EEEEEeCCCCCcHHHHHHH-HHHHHHHHcCCCeEEEEecCCccccc
Confidence 455555433 34355555 45567888887 89999998764
No 259
>PLN03194 putative disease resistance protein; Provisional
Probab=20.42 E-value=2.8e+02 Score=21.81 Aligned_cols=72 Identities=14% Similarity=0.049 Sum_probs=41.5
Q ss_pred hcccCCCceeEEEEccccchhhHHHHHHHHHHHHhcCC-eEEEcCCchHHHHHHHHHHHHHhhcCCCCCCCEEEeCh
Q psy9123 15 TASSNGQSKIAVLLHSDLNNITCDEKWMRDIKNQNESG-SVLVPCYPSGVIYDLFECLSSHLDNSSLTQIPMFFISP 90 (118)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~eL~~~I~~Tl~~GG-~VLIPaFavGRtqELL~~L~~l~~~~~Lp~iPIyldSP 90 (118)
..||..++++||.+-- --+|+...+.+.+.+++++.| +|.+=..-.++=..+...|.+..++.++. |.+.||
T Consensus 18 ~~~~~~~~~yDVFISF-rG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~---IvVfS~ 90 (187)
T PLN03194 18 PSSSSSAKPCDVFINH-RGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVG---VAVFSP 90 (187)
T ss_pred ccCCCCCCCCcEEEeC-CCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEE---EEEECC
Confidence 4567778899998854 345666778888888886666 33343222333334444444444444332 555555
No 260
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=20.36 E-value=1.2e+02 Score=25.18 Aligned_cols=44 Identities=11% Similarity=0.123 Sum_probs=29.2
Q ss_pred HHHHHHhcCCeEEE---cCCchHHHHHHHHHHHHHhhcCCCCCCCEEEeCh
Q psy9123 43 RDIKNQNESGSVLV---PCYPSGVIYDLFECLSSHLDNSSLTQIPMFFISP 90 (118)
Q Consensus 43 ~I~~Tl~~GG~VLI---PaFavGRtqELL~~L~~l~~~~~Lp~iPIyldSP 90 (118)
.+.+.++.+-++++ |+.|.|+++++ ..+.++.++. ++++++|.-
T Consensus 123 ~le~~i~~~tklv~le~psnptg~v~dl-~~I~~la~~~---g~~vivD~a 169 (378)
T TIGR01329 123 KVKAALGPKTKLVLLESPTNPLQKIVDI-RKISEMAHAQ---NALVVVDNT 169 (378)
T ss_pred HHHHhcCcCceEEEEECCCCCCCeeecH-HHHHHHHHHc---CCEEEEECC
Confidence 34455667788999 99999998884 3344444443 356777764
No 261
>KOG1720|consensus
Probab=20.29 E-value=1.9e+02 Score=23.60 Aligned_cols=37 Identities=19% Similarity=0.254 Sum_probs=29.9
Q ss_pred hhhHHHHHHHHHHHHhcCCeEEEcCCc-hHHHHHHHHHH
Q psy9123 34 NITCDEKWMRDIKNQNESGSVLVPCYP-SGVIYDLFECL 71 (118)
Q Consensus 34 ~~~~~eL~~~I~~Tl~~GG~VLIPaFa-vGRtqELL~~L 71 (118)
.+.+.++.+++..+.+ ||++.|=|-+ .|||=.|+-+.
T Consensus 131 ~~~v~~fv~i~e~~~~-~g~iaVHCkaGlGRTG~liAc~ 168 (225)
T KOG1720|consen 131 DAIVKEFVKIVENAEK-GGKIAVHCKAGLGRTGTLIACY 168 (225)
T ss_pred HHHHHHHHHHHHHHHh-cCeEEEEeccCCCchhHHHHHH
Confidence 3457889999998888 9999999988 69987776443
No 262
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=20.28 E-value=1.8e+02 Score=21.27 Aligned_cols=45 Identities=13% Similarity=0.019 Sum_probs=26.4
Q ss_pred HHHHHHHHHhcCCeEEEcCCchHHHHHHHHHHHHHhhc-----CCCCCCCEEE
Q psy9123 40 KWMRDIKNQNESGSVLVPCYPSGVIYDLFECLSSHLDN-----SSLTQIPMFF 87 (118)
Q Consensus 40 L~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L~~l~~~-----~~Lp~iPIyl 87 (118)
.++.+.+. +++|.- -+++.||.......+..++.+ ..+|.-|+++
T Consensus 32 ~~~a~~~l-~~~G~~--ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp~g~li~ 81 (157)
T smart00775 32 VAKLYRDI-QNNGYK--ILYLTARPIGQADRTRSYLSQIKQDGHNLPHGPVLL 81 (157)
T ss_pred HHHHHHHH-HHcCCe--EEEEcCCcHHHHHHHHHHHHHhhhccccCCCceEEE
Confidence 34444443 344533 457889988887655555554 3466667765
No 263
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=20.24 E-value=1.1e+02 Score=23.48 Aligned_cols=39 Identities=13% Similarity=0.011 Sum_probs=27.8
Q ss_pred cchhhHHHHHHHHHHHHhcCCeEEEcCCchHHHHHHHHHH
Q psy9123 32 LNNITCDEKWMRDIKNQNESGSVLVPCYPSGVIYDLFECL 71 (118)
Q Consensus 32 ~~~~~~~eL~~~I~~Tl~~GG~VLIPaFavGRtqELL~~L 71 (118)
+.+...+++.+.+.++++++|.+.| +.+.|++..-+|-.
T Consensus 3 l~~~~a~~i~~~i~~~i~~~~~~~l-~lsGGstp~~~y~~ 41 (219)
T cd01400 3 LAEALADRIAEALAAAIAKRGRFSL-ALSGGSTPKPLYEL 41 (219)
T ss_pred HHHHHHHHHHHHHHHHHHhcCeEEE-EECCCccHHHHHHH
Confidence 3455667888889999988887554 57778877665544
No 264
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=20.16 E-value=75 Score=25.42 Aligned_cols=27 Identities=19% Similarity=0.020 Sum_probs=20.5
Q ss_pred cccCCCceeEEEEccccchhhHHHHHH
Q psy9123 16 ASSNGQSKIAVLLHSDLNNITCDEKWM 42 (118)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~eL~~ 42 (118)
||+.++.++||.+++---+-|.|-|+.
T Consensus 27 AS~d~g~ePDVVlA~aGd~pT~E~lAA 53 (203)
T PF09363_consen 27 ASTDQGEEPDVVLACAGDVPTLEVLAA 53 (203)
T ss_dssp C-SSSTTT-SEEEEEESHHHHHHHHHH
T ss_pred ccCCCCCCCCEEEEecCchhhHHHHHH
Confidence 677789999999999888888776653
Done!