RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy9123
         (118 letters)



>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA
           processing, artemis, V(D)J recombination, double-strand
           break repair; 2.50A {Saccharomyces cerevisiae} SCOP:
           d.157.1.10
          Length = 717

 Score = 51.3 bits (122), Expect = 7e-09
 Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 5/74 (6%)

Query: 37  CDEKWMRDIKNQ-NESGSVLVPCYPSG----VIYDLFECLSSHLDNSSLTQIPMFFISPV 91
             + +   +K   +  GSV++P   SG    +   + E L      ++ TQ+P+  +S  
Sbjct: 226 RSKIFKDTLKKGLSSDGSVIIPVDMSGKFLDLFTQVHELLFESTKINAHTQVPVLILSYA 285

Query: 92  ADISLAYSNILAEW 105
              +L Y+  + EW
Sbjct: 286 RGRTLTYAKSMLEW 299


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.315    0.130    0.381 

Gapped
Lambda     K      H
   0.267   0.0489    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,633,435
Number of extensions: 79616
Number of successful extensions: 122
Number of sequences better than 10.0: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 1
Length of query: 118
Length of database: 6,701,793
Length adjustment: 81
Effective length of query: 37
Effective length of database: 4,440,192
Effective search space: 164287104
Effective search space used: 164287104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.0 bits)