RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9123
         (118 letters)



>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein
           2, CFT2 {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 514

 Score = 38.6 bits (89), Expect = 5e-05
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 52  GSVLVPCYPSG----VIYDLFECLSSHLDNSSLTQIPMFFISPVADISLAYSNILAEW 105
           GSV++P   SG    +   + E L      ++ TQ+P+  +S     +L Y+  + EW
Sbjct: 242 GSVIIPVDMSGKFLDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEW 299


>d1vkya_ e.53.1.1 (A:) Queuosine biosynthesis protein queA
          {Thermotoga maritima [TaxId: 2336]}
          Length = 332

 Score = 24.6 bits (53), Expect = 4.0
 Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 4/49 (8%)

Query: 9  DSLIASTASSN-GQSKIAVLLHSDLNNITCDEKWMRDIKNQNESGSVLV 56
            LIA         S+   L+         + +  R+I    E G +LV
Sbjct: 9  PELIAQEPVEPRDASR---LMVLHRKTQRIEHRIFREIIEYLEPGDLLV 54


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.130    0.381 

Gapped
Lambda     K      H
   0.267   0.0726    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 400,069
Number of extensions: 15518
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 4
Length of query: 118
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 44
Effective length of database: 1,391,576
Effective search space: 61229344
Effective search space used: 61229344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (21.9 bits)