BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9124
(213 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P08761|MSRA_DROME Peptide methionine sulfoxide reductase OS=Drosophila melanogaster
GN=Eip71CD PE=2 SV=2
Length = 246
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 47/79 (59%), Gaps = 8/79 (10%)
Query: 5 MSQTNGQNNTK-TAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTE- 62
+S + N TK TA MGCFW + L+G T+GVLRT VGY+GG+++ PTYR + TE
Sbjct: 29 ISPVHDVNVTKATATFGMGCFWGAESLYGATRGVLRTTVGYAGGSSDLPTYRKMGDHTEV 88
Query: 63 ------QEVVVVEYCLDLF 75
V+ + LDLF
Sbjct: 89 LEIDYDPTVISFKELLDLF 107
>sp|O83641|MSRAB_TREPA Peptide methionine sulfoxide reductase MsrB/MsrA OS=Treponema
pallidum (strain Nichols) GN=msrAB PE=3 SV=1
Length = 291
Score = 64.7 bits (156), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 37/58 (63%)
Query: 16 TAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQEVVVVEYCLD 73
TA+ A GCFW+ + F KGVLR +VGY+GGTT++PTYRN+ T VE D
Sbjct: 128 TALFAAGCFWSTEAYFRRVKGVLRVRVGYTGGTTKSPTYRNVCTGTTGHAEAVEILFD 185
>sp|A4FYX5|MSRA_METM5 Peptide methionine sulfoxide reductase MsrA OS=Methanococcus
maripaludis (strain C5 / ATCC BAA-1333) GN=msrA PE=3
SV=1
Length = 157
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 33/45 (73%)
Query: 13 NTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
NT+TAV MGCFW+ + LF KGV+ T+VG+ GGT +NPTY +
Sbjct: 3 NTETAVFGMGCFWSAEELFRKIKGVISTEVGFMGGTVKNPTYGQV 47
>sp|B2TZL3|MSRA_SHIB3 Peptide methionine sulfoxide reductase MsrA OS=Shigella boydii
serotype 18 (strain CDC 3083-94 / BS512) GN=msrA PE=3
SV=1
Length = 212
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%)
Query: 6 SQTNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
S TN + + A+ AMGCFW + LF GV T GY+GG T NPTYR +
Sbjct: 35 SMTNVPDGMEIAIFAMGCFWGVESLFWQLPGVYSTAAGYTGGYTPNPTYREV 86
>sp|A6VFD6|MSRA_METM7 Peptide methionine sulfoxide reductase MsrA OS=Methanococcus
maripaludis (strain C7 / ATCC BAA-1331) GN=msrA PE=3
SV=1
Length = 157
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 31/45 (68%)
Query: 13 NTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
NT+TAV MGCFW+ + LF GV+ T+VGY GG +NPTY +
Sbjct: 3 NTETAVFGMGCFWSAEELFRHVDGVISTEVGYMGGNVKNPTYGQV 47
>sp|Q9SL43|MSRA5_ARATH Peptide methionine sulfoxide reductase A5 OS=Arabidopsis thaliana
GN=MSRA5 PE=2 SV=1
Length = 254
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 15 KTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQEVVVVEY 70
K+AV A+G FW + FG GV+RT GY+GGT NP YRN+ E V VEY
Sbjct: 53 KSAVFALGSFWRSEAAFGCINGVVRTSAGYAGGTKTNPEYRNLGDHAES--VQVEY 106
>sp|Q5YUS0|MSRA_NOCFA Peptide methionine sulfoxide reductase MsrA OS=Nocardia farcinica
(strain IFM 10152) GN=msrA PE=3 SV=1
Length = 170
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 36/57 (63%)
Query: 13 NTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQEVVVVE 69
+T+ A+LA GCFW L GV+ T+VGY+GGT ++PTYRN P E +V +
Sbjct: 3 DTRRAILAGGCFWGMQDLIRRQPGVVSTRVGYTGGTNDHPTYRNHPGHAEAVEIVYD 59
>sp|Q31TF9|MSRA_SHIBS Peptide methionine sulfoxide reductase MsrA OS=Shigella boydii
serotype 4 (strain Sb227) GN=msrA PE=3 SV=1
Length = 212
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%)
Query: 6 SQTNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
S TN + + A+ AMGCFW + LF GV T GY+GG T NPTYR +
Sbjct: 35 SMTNEPDGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREV 86
>sp|Q0T9G6|MSRA_ECOL5 Peptide methionine sulfoxide reductase MsrA OS=Escherichia coli
O6:K15:H31 (strain 536 / UPEC) GN=msrA PE=3 SV=1
Length = 212
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%)
Query: 6 SQTNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
S TN + + A+ AMGCFW + LF GV T GY+GG T NPTYR +
Sbjct: 35 SMTNVPDGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREV 86
>sp|Q3YUC8|MSRA_SHISS Peptide methionine sulfoxide reductase MsrA OS=Shigella sonnei
(strain Ss046) GN=msrA PE=3 SV=1
Length = 212
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%)
Query: 6 SQTNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
S TN + + A+ AMGCFW + LF GV T GY+GG T NPTYR +
Sbjct: 35 SMTNVPDGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREV 86
>sp|P0A745|MSRA_SHIFL Peptide methionine sulfoxide reductase MsrA OS=Shigella flexneri
GN=msrA PE=3 SV=2
Length = 212
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%)
Query: 6 SQTNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
S TN + + A+ AMGCFW + LF GV T GY+GG T NPTYR +
Sbjct: 35 SMTNVPDGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREV 86
>sp|Q0SXG5|MSRA_SHIF8 Peptide methionine sulfoxide reductase MsrA OS=Shigella flexneri
serotype 5b (strain 8401) GN=msrA PE=3 SV=1
Length = 212
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%)
Query: 6 SQTNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
S TN + + A+ AMGCFW + LF GV T GY+GG T NPTYR +
Sbjct: 35 SMTNVPDGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREV 86
>sp|P0A744|MSRA_ECOLI Peptide methionine sulfoxide reductase MsrA OS=Escherichia coli
(strain K12) GN=msrA PE=1 SV=2
Length = 212
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%)
Query: 6 SQTNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
S TN + + A+ AMGCFW + LF GV T GY+GG T NPTYR +
Sbjct: 35 SMTNVPDGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREV 86
>sp|B1ISY2|MSRA_ECOLC Peptide methionine sulfoxide reductase MsrA OS=Escherichia coli
(strain ATCC 8739 / DSM 1576 / Crooks) GN=msrA PE=3
SV=1
Length = 212
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%)
Query: 6 SQTNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
S TN + + A+ AMGCFW + LF GV T GY+GG T NPTYR +
Sbjct: 35 SMTNVPDGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREV 86
>sp|A8A7X5|MSRA_ECOHS Peptide methionine sulfoxide reductase MsrA OS=Escherichia coli
O9:H4 (strain HS) GN=msrA PE=3 SV=1
Length = 212
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%)
Query: 6 SQTNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
S TN + + A+ AMGCFW + LF GV T GY+GG T NPTYR +
Sbjct: 35 SMTNVPDGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREV 86
>sp|B1XDW8|MSRA_ECODH Peptide methionine sulfoxide reductase MsrA OS=Escherichia coli
(strain K12 / DH10B) GN=msrA PE=3 SV=1
Length = 212
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%)
Query: 6 SQTNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
S TN + + A+ AMGCFW + LF GV T GY+GG T NPTYR +
Sbjct: 35 SMTNVPDGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREV 86
>sp|C4ZR95|MSRA_ECOBW Peptide methionine sulfoxide reductase MsrA OS=Escherichia coli
(strain K12 / MC4100 / BW2952) GN=msrA PE=3 SV=1
Length = 212
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%)
Query: 6 SQTNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
S TN + + A+ AMGCFW + LF GV T GY+GG T NPTYR +
Sbjct: 35 SMTNVPDGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREV 86
>sp|B7M9I1|MSRA_ECO8A Peptide methionine sulfoxide reductase MsrA OS=Escherichia coli
O8 (strain IAI1) GN=msrA PE=3 SV=1
Length = 212
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%)
Query: 6 SQTNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
S TN + + A+ AMGCFW + LF GV T GY+GG T NPTYR +
Sbjct: 35 SMTNVPDGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREV 86
>sp|B7LCT1|MSRA_ECO55 Peptide methionine sulfoxide reductase MsrA OS=Escherichia coli
(strain 55989 / EAEC) GN=msrA PE=3 SV=1
Length = 212
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%)
Query: 6 SQTNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
S TN + + A+ AMGCFW + LF GV T GY+GG T NPTYR +
Sbjct: 35 SMTNVPDGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREV 86
>sp|B7MLN1|MSRA_ECO45 Peptide methionine sulfoxide reductase MsrA OS=Escherichia coli
O45:K1 (strain S88 / ExPEC) GN=msrA PE=3 SV=1
Length = 212
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%)
Query: 6 SQTNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
S TN + + A+ AMGCFW + LF GV T GY+GG T NPTYR +
Sbjct: 35 SMTNVPDGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREV 86
>sp|A7ZV98|MSRA_ECO24 Peptide methionine sulfoxide reductase MsrA OS=Escherichia coli
O139:H28 (strain E24377A / ETEC) GN=msrA PE=3 SV=1
Length = 212
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%)
Query: 6 SQTNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
S TN + + A+ AMGCFW + LF GV T GY+GG T NPTYR +
Sbjct: 35 SMTNVPDGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREV 86
>sp|B7NGF6|MSRA_ECOLU Peptide methionine sulfoxide reductase MsrA OS=Escherichia coli
O17:K52:H18 (strain UMN026 / ExPEC) GN=msrA PE=3 SV=1
Length = 212
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%)
Query: 6 SQTNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
S TN + + A+ AMGCFW + LF GV T GY+GG T NPTYR +
Sbjct: 35 SMTNVPDGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREV 86
>sp|B7MTA1|MSRA_ECO81 Peptide methionine sulfoxide reductase MsrA OS=Escherichia coli
O81 (strain ED1a) GN=msrA PE=3 SV=1
Length = 212
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%)
Query: 6 SQTNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
S TN + + A+ AMGCFW + LF GV T GY+GG T NPTYR +
Sbjct: 35 SMTNVPDGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREV 86
>sp|B7NUD2|MSRA_ECO7I Peptide methionine sulfoxide reductase MsrA OS=Escherichia coli
O7:K1 (strain IAI39 / ExPEC) GN=msrA PE=3 SV=1
Length = 212
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%)
Query: 6 SQTNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
S TN + + A+ AMGCFW + LF GV T GY+GG T NPTYR +
Sbjct: 35 SMTNVPDGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREV 86
>sp|B6I2D2|MSRA_ECOSE Peptide methionine sulfoxide reductase MsrA OS=Escherichia coli
(strain SE11) GN=msrA PE=3 SV=1
Length = 212
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%)
Query: 6 SQTNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
S TN + + A+ AMGCFW + LF GV T GY+GG T NPTYR +
Sbjct: 35 SMTNVPDGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREV 86
>sp|B7LMP0|MSRA_ESCF3 Peptide methionine sulfoxide reductase MsrA OS=Escherichia
fergusonii (strain ATCC 35469 / DSM 13698 / CDC
0568-73) GN=msrA PE=3 SV=1
Length = 212
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%)
Query: 6 SQTNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
S TN + + A+ AMGCFW + LF GV T GY+GG T NPTYR +
Sbjct: 35 SMTNVPDGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREV 86
>sp|B5Z3H5|MSRA_ECO5E Peptide methionine sulfoxide reductase MsrA OS=Escherichia coli
O157:H7 (strain EC4115 / EHEC) GN=msrA PE=3 SV=1
Length = 212
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%)
Query: 6 SQTNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
S TN + + A+ AMGCFW + LF GV T GY+GG T NPTYR +
Sbjct: 35 SMTNVPDGMEIAIFAMGCFWGVERLFWQLHGVYSTAAGYTGGYTPNPTYREV 86
>sp|Q8XCG3|MSRA_ECO57 Peptide methionine sulfoxide reductase MsrA OS=Escherichia coli
O157:H7 GN=msrA PE=3 SV=3
Length = 212
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%)
Query: 6 SQTNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
S TN + + A+ AMGCFW + LF GV T GY+GG T NPTYR +
Sbjct: 35 SMTNVPDGMEIAIFAMGCFWGVERLFWQLHGVYSTAAGYTGGYTPNPTYREV 86
>sp|B7UQN3|MSRA_ECO27 Peptide methionine sulfoxide reductase MsrA OS=Escherichia coli
O127:H6 (strain E2348/69 / EPEC) GN=msrA PE=3 SV=1
Length = 212
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%)
Query: 6 SQTNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
S TN + + A+ AMGCFW + LF GV T GY+GG T NPTYR +
Sbjct: 35 SMTNVPDGMEIAIFAMGCFWGVERLFWQLHGVYSTAAGYTGGYTPNPTYREV 86
>sp|B1LRA3|MSRA_ECOSM Peptide methionine sulfoxide reductase MsrA OS=Escherichia coli
(strain SMS-3-5 / SECEC) GN=msrA PE=3 SV=1
Length = 212
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%)
Query: 6 SQTNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
S TN + + A+ AMGCFW + LF GV T GY+GG T NPTYR +
Sbjct: 35 SMTNVPDGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREV 86
>sp|A9AB97|MSRA_METM6 Peptide methionine sulfoxide reductase MsrA OS=Methanococcus
maripaludis (strain C6 / ATCC BAA-1332) GN=msrA PE=3
SV=1
Length = 157
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 31/45 (68%)
Query: 13 NTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
NT+TAV MGCFW+ + LF GV+ T+VG+ GG +NPTY +
Sbjct: 3 NTETAVFGMGCFWSAEELFRKINGVISTEVGFMGGNIKNPTYGQV 47
>sp|A7MM56|MSRA_CROS8 Peptide methionine sulfoxide reductase MsrA OS=Cronobacter
sakazakii (strain ATCC BAA-894) GN=msrA PE=3 SV=1
Length = 212
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 30/52 (57%)
Query: 6 SQTNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
S TN + A+ AMGCFW + LF GV T GY+GG T NPTYR +
Sbjct: 35 SMTNVPEGMEVALFAMGCFWGVERLFWALPGVYSTAAGYTGGYTPNPTYREV 86
>sp|Q9CCZ3|MSRA_MYCLE Peptide methionine sulfoxide reductase MsrA OS=Mycobacterium
leprae (strain TN) GN=msrA PE=3 SV=1
Length = 177
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 31/47 (65%)
Query: 10 GQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRN 56
+ NT+ A+LA GCFW LF GV+ T+VGY+GG T N TYRN
Sbjct: 2 ARTNTRKAILAGGCFWGIQNLFRRQPGVISTRVGYTGGGTPNATYRN 48
>sp|B8ZTJ5|MSRA_MYCLB Peptide methionine sulfoxide reductase MsrA OS=Mycobacterium
leprae (strain Br4923) GN=msrA PE=3 SV=1
Length = 177
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 31/47 (65%)
Query: 10 GQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRN 56
+ NT+ A+LA GCFW LF GV+ T+VGY+GG T N TYRN
Sbjct: 2 ARTNTRKAILAGGCFWGIQNLFRRQPGVISTRVGYTGGGTPNATYRN 48
>sp|A4W5V5|MSRA_ENT38 Peptide methionine sulfoxide reductase MsrA OS=Enterobacter sp.
(strain 638) GN=msrA PE=3 SV=1
Length = 213
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%)
Query: 6 SQTNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
S TN + + A+ AMGCFW + LF GV T GY+GG T NPTYR +
Sbjct: 35 SMTNVPDGMEIALFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREV 86
>sp|A1TH24|MSRA_MYCVP Peptide methionine sulfoxide reductase MsrA OS=Mycobacterium
vanbaalenii (strain DSM 7251 / PYR-1) GN=msrA PE=3 SV=1
Length = 169
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 13/98 (13%)
Query: 12 NNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQ-EVV---- 66
++ K AVLA GCFW L GV+ T+VGY+GG ++PTYRN P E E+V
Sbjct: 2 SDHKRAVLAGGCFWGMQDLIRKQPGVVSTRVGYTGGQNDHPTYRNHPGHAEAIEIVYDPA 61
Query: 67 ------VVEYCLDLFEPSGHGKRRRRRDSNSSNMTQTF 98
++E+ + +P+ K R+ D +S ++ F
Sbjct: 62 QTDYRALLEFFFQIHDPT--TKNRQGNDVGTSYRSEIF 97
>sp|A8G8X6|MSRA_SERP5 Peptide methionine sulfoxide reductase MsrA OS=Serratia
proteamaculans (strain 568) GN=msrA PE=3 SV=1
Length = 213
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%)
Query: 6 SQTNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
S T + + A+ AMGCFW + LF +GV T GYSGG T NPTYR +
Sbjct: 36 SMTQVPDGLEVAIFAMGCFWGVERLFWQQQGVYSTAAGYSGGYTPNPTYREV 87
>sp|A4T413|MSRA_MYCGI Peptide methionine sulfoxide reductase MsrA OS=Mycobacterium
gilvum (strain PYR-GCK) GN=msrA PE=3 SV=1
Length = 169
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 13/98 (13%)
Query: 12 NNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQ-EVV---- 66
++ K AVLA GCFW L GV+ T+VGY+GG ++PTYRN P E E+V
Sbjct: 2 SDHKRAVLAGGCFWGMQDLIRKQPGVVSTRVGYTGGQNDHPTYRNHPGHAEAIEIVYDPA 61
Query: 67 ------VVEYCLDLFEPSGHGKRRRRRDSNSSNMTQTF 98
++E+ + +P+ K R+ D +S ++ F
Sbjct: 62 QTDYRALLEFFFQIHDPT--TKNRQGNDIGTSYRSEIF 97
>sp|A8M3K6|MSRA_SALAI Peptide methionine sulfoxide reductase MsrA OS=Salinispora
arenicola (strain CNS-205) GN=msrA PE=3 SV=1
Length = 220
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 29/46 (63%)
Query: 12 NNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
T+ AV MGCFW + LF T GVL T VGY+GG T NP+Y +
Sbjct: 43 EGTQVAVFGMGCFWGAERLFWTLPGVLTTSVGYAGGYTPNPSYEEV 88
>sp|Q97MV3|MSRA_CLOAB Peptide methionine sulfoxide reductase MsrA OS=Clostridium
acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 /
LMG 5710 / VKM B-1787) GN=msrA PE=3 SV=1
Length = 162
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 28/43 (65%)
Query: 15 KTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
K + A GCFW + F T GVL TKVGY+ G TE+PTY ++
Sbjct: 2 KKIIFAGGCFWGVEAYFNTIDGVLNTKVGYANGNTEDPTYEDV 44
>sp|P54149|MSRA_BOVIN Mitochondrial peptide methionine sulfoxide reductase OS=Bos taurus
GN=MSRA PE=1 SV=2
Length = 233
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%)
Query: 12 NNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
T+ AV MGCFW + F T KGV T+VG++GG T NPTY+ +
Sbjct: 61 EGTQMAVFGMGCFWGAERKFWTLKGVYSTQVGFAGGYTPNPTYKEV 106
>sp|Q6NEL2|MSRA_CORDI Peptide methionine sulfoxide reductase MsrA OS=Corynebacterium
diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype
gravis) GN=msrA PE=3 SV=1
Length = 220
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%)
Query: 10 GQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRN 56
GQ T+T + +GC+W + LF T GV+ T VG++GG T NPTYR
Sbjct: 39 GQPGTETIYIGIGCYWGAEKLFWETPGVVYTSVGFAGGITPNPTYRE 85
>sp|Q328B8|MSRA_SHIDS Peptide methionine sulfoxide reductase MsrA OS=Shigella
dysenteriae serotype 1 (strain Sd197) GN=msrA PE=3 SV=1
Length = 212
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 30/52 (57%)
Query: 6 SQTNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
S TN + + A+ AMGCFW + LF V T GY+GG T NPTYR +
Sbjct: 35 SMTNVPDGMEIAIFAMGCFWGVERLFWQLPSVYSTAAGYTGGYTPNPTYREV 86
>sp|B5Y2Y3|MSRA_KLEP3 Peptide methionine sulfoxide reductase MsrA OS=Klebsiella
pneumoniae (strain 342) GN=msrA PE=3 SV=1
Length = 211
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 30/52 (57%)
Query: 6 SQTNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
S TN + A+ AMGCFW + LF GV T GY+GG T NPTYR +
Sbjct: 35 SMTNVPAGMEVALFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREV 86
>sp|Q12TP4|MSRA_METBU Peptide methionine sulfoxide reductase MsrA OS=Methanococcoides
burtonii (strain DSM 6242) GN=msrA PE=3 SV=1
Length = 153
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 29/41 (70%)
Query: 17 AVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
A A GCFW + F +GV+ TKVGY+GGT ++PTY+++
Sbjct: 4 ATFAAGCFWGVEAAFSKVEGVISTKVGYTGGTLKDPTYKDV 44
>sp|A9N540|MSRA_SALPB Peptide methionine sulfoxide reductase MsrA OS=Salmonella
paratyphi B (strain ATCC BAA-1250 / SPB7) GN=msrA PE=3
SV=1
Length = 212
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 29/52 (55%)
Query: 6 SQTNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
S TN + A AMGCFW + LF GV T GY+GG T NPTYR +
Sbjct: 35 SMTNVPAGMEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREV 86
>sp|B4TT49|MSRA_SALSV Peptide methionine sulfoxide reductase MsrA OS=Salmonella
schwarzengrund (strain CVM19633) GN=msrA PE=3 SV=1
Length = 212
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 29/52 (55%)
Query: 6 SQTNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
S TN + A AMGCFW + LF GV T GY+GG T NPTYR +
Sbjct: 35 SMTNVPAGMEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREV 86
>sp|B5F3D4|MSRA_SALA4 Peptide methionine sulfoxide reductase MsrA OS=Salmonella agona
(strain SL483) GN=msrA PE=3 SV=1
Length = 212
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 29/52 (55%)
Query: 6 SQTNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
S TN + A AMGCFW + LF GV T GY+GG T NPTYR +
Sbjct: 35 SMTNVPAGMEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREV 86
>sp|Q8ZK71|MSRA_SALTY Peptide methionine sulfoxide reductase MsrA OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=msrA PE=3 SV=1
Length = 212
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 29/52 (55%)
Query: 6 SQTNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
S TN + A AMGCFW + LF GV T GY+GG T NPTYR +
Sbjct: 35 SMTNVPAGMEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREV 86
>sp|B4T3H1|MSRA_SALNS Peptide methionine sulfoxide reductase MsrA OS=Salmonella newport
(strain SL254) GN=msrA PE=3 SV=1
Length = 212
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 29/52 (55%)
Query: 6 SQTNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNI 57
S TN + A AMGCFW + LF GV T GY+GG T NPTYR +
Sbjct: 35 SMTNVPAGMEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREV 86
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.131 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,594,279
Number of Sequences: 539616
Number of extensions: 3082515
Number of successful extensions: 9124
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 8765
Number of HSP's gapped (non-prelim): 347
length of query: 213
length of database: 191,569,459
effective HSP length: 113
effective length of query: 100
effective length of database: 130,592,851
effective search space: 13059285100
effective search space used: 13059285100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)