Query psy9124
Match_columns 213
No_of_seqs 182 out of 1349
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 19:32:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9124.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9124hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0225 MsrA Peptide methionin 100.0 5.2E-53 1.1E-57 352.4 6.2 137 11-151 3-164 (174)
2 PRK13014 methionine sulfoxide 100.0 5.3E-50 1.1E-54 338.9 6.1 142 9-154 3-170 (186)
3 PRK14054 methionine sulfoxide 100.0 7.2E-49 1.6E-53 328.6 5.8 132 13-148 2-158 (172)
4 PRK00058 methionine sulfoxide 100.0 2.7E-48 5.8E-53 334.2 6.5 134 11-149 42-203 (213)
5 PF01625 PMSR: Peptide methion 100.0 2.8E-48 6.1E-53 320.2 1.8 129 15-148 1-154 (155)
6 TIGR00401 msrA methionine-S-su 100.0 2E-47 4.4E-52 313.4 5.5 122 15-140 1-144 (149)
7 PRK05528 methionine sulfoxide 100.0 5.5E-46 1.2E-50 307.0 5.7 131 14-150 1-149 (156)
8 KOG1635|consensus 100.0 8E-46 1.7E-50 308.7 4.9 135 9-148 19-178 (191)
9 PRK05550 bifunctional methioni 100.0 1.1E-44 2.3E-49 323.2 5.3 135 11-150 124-282 (283)
10 PRK14018 trifunctional thiored 100.0 3.3E-44 7.3E-49 342.3 5.4 137 11-152 195-354 (521)
11 PF00403 HMA: Heavy-metal-asso 82.0 0.75 1.6E-05 31.1 1.2 46 21-74 10-55 (62)
12 PF08098 ATX_III: Anemonia sul 79.3 0.73 1.6E-05 27.5 0.4 8 20-27 12-19 (27)
13 PF03852 Vsr: DNA mismatch end 65.1 3.6 7.8E-05 30.6 1.3 14 13-26 55-68 (75)
14 PF03622 IBV_3B: IBV 3B protei 40.0 16 0.00034 26.2 1.1 22 8-29 31-52 (64)
15 COG3727 Vsr DNA G:T-mismatch r 32.2 24 0.00051 29.3 1.1 18 12-29 55-72 (150)
16 KOG2003|consensus 31.0 16 0.00036 36.2 0.0 43 133-178 510-554 (840)
17 COG2608 CopZ Copper chaperone 30.7 37 0.00081 24.0 1.8 48 20-75 13-60 (71)
18 PF02083 Urotensin_II: Urotens 29.3 18 0.00038 18.0 -0.0 6 21-26 4-9 (12)
19 KOG1402|consensus 23.4 51 0.0011 31.5 1.8 18 9-26 145-162 (427)
20 PF02682 AHS1: Allophanate hyd 21.3 70 0.0015 27.4 2.1 41 25-75 28-70 (202)
No 1
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-53 Score=352.38 Aligned_cols=137 Identities=23% Similarity=0.398 Sum_probs=124.3
Q ss_pred CCCccEEEEecCCcchhhhhccCCCCeEEEEeeecCCCCCCCcccccccc-----------cccchhhHHHHHhhcc---
Q psy9124 11 QNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAF-----------TEQEVVVVEYCLDLFE--- 76 (213)
Q Consensus 11 ~~~~~~a~fagGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe~V~~~-----------~~~e~Vs~e~LL~iF~--- 76 (213)
++++++|+||||||||+|++|+++|||++|+|||+||+++||||++||++ |||++|||++||++||
T Consensus 3 ~~~~~~a~fagGCFWg~E~~f~~i~GV~~t~~GYagG~~~nptY~~Vcsg~TgHaE~V~V~yDp~~isy~~LL~~ff~ih 82 (174)
T COG0225 3 PAGMEKAYFAGGCFWGVEAYFEQIPGVLSTVSGYAGGHTPNPTYEEVCSGTTGHAEAVEVTYDPKVISYEELLEVFFEIH 82 (174)
T ss_pred cCCcEEEEEeccCccchHHHHhhCCCeEEEeeeEcCCCCCCCChhhccCCCCCceEEEEEEeCCccccHHHHHHHHheec
Confidence 57899999999999999999999999999999999999999999999975 5899999999999999
Q ss_pred -ccCCccc----cccccccccccCcccccCCchhhccc-cccccccccCC--ceEEeecCCCCCCchhhccC---CCCCC
Q psy9124 77 -PSGHGKR----RRRRDSNSSNMTQTFTYASHPHVHHH-DNHDNDTQYTK--FQENIEYTVLMPGDLYRKTI---SMESS 145 (213)
Q Consensus 77 -PT~~~rq----G~QYRSaIy~~~~eq~~~q~~~a~~~-~~~~~~~~~~k--vTEi~p~~~F~pAE~YHQ~Y---~p~~y 145 (213)
||+.||| |+|||||||++|++ |+.+|+++ ++...++.+++ +|||+|+++|||||||||+| ||++|
T Consensus 83 DPT~~nrQGnD~GtqYRs~Iy~~~~~----q~~~a~~~~~~~q~~~~~~~~IvteI~p~~~Fy~AEeYHQ~Yl~KNP~gY 158 (174)
T COG0225 83 DPTSLNRQGNDRGTQYRSAIYYTNEE----QKAIAEASIEELQASGYFKKPIVTEIEPAKNFYPAEEYHQDYLKKNPNGY 158 (174)
T ss_pred CCCCCCccCCcccccceeEEEEcCHH----HHHHHHHHHHHHHHhccCCCCeEEEeeccccCcccHHHHHHHHHhCCCCc
Confidence 9999999 99999999999995 78888885 23334567774 99999999999999999999 99999
Q ss_pred ccchhh
Q psy9124 146 CSTFLL 151 (213)
Q Consensus 146 C~~~l~ 151 (213)
|+..+.
T Consensus 159 ~~~~~~ 164 (174)
T COG0225 159 CHIGLT 164 (174)
T ss_pred eeeccc
Confidence 997443
No 2
>PRK13014 methionine sulfoxide reductase A; Provisional
Probab=100.00 E-value=5.3e-50 Score=338.94 Aligned_cols=142 Identities=23% Similarity=0.374 Sum_probs=126.7
Q ss_pred CCCCCccEEEEecCCcchhhhhccCCCCeEEEEeeecCCCCCCCcccccccc-----------cccchhhHHHHHhhcc-
Q psy9124 9 NGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAF-----------TEQEVVVVEYCLDLFE- 76 (213)
Q Consensus 9 ~~~~~~~~a~fagGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe~V~~~-----------~~~e~Vs~e~LL~iF~- 76 (213)
+.++++++|+||||||||+|++|+++|||++|+|||+||.++||||++||++ |||++|||++||++||
T Consensus 3 ~~~~~~~~a~~agGCFWg~E~~f~~l~GV~~t~vGYagG~~~nPtY~~Vcsg~tgH~E~V~V~yDp~~iSy~~LL~~Ff~ 82 (186)
T PRK13014 3 AAADGMETATFAGGCFWGVEGVFQHVPGVVSVVSGYSGGHVDNPTYEQVCTGTTGHAEAVQITYDPKQVSYENLLQIFFS 82 (186)
T ss_pred CCCCCccEEEEecCCceeeHHHHccCCCEEEEEeeecCCCCCCCChhhhcCCCCCceEEEEEEECCCcCCHHHHHHHHHH
Confidence 5678899999999999999999999999999999999999999999999975 5899999999999999
Q ss_pred ---ccCCccc----cccccccccccCcccccCCchhhccc-cccccccccCC--ceEEeecCCCCCCchhhccC---CCC
Q psy9124 77 ---PSGHGKR----RRRRDSNSSNMTQTFTYASHPHVHHH-DNHDNDTQYTK--FQENIEYTVLMPGDLYRKTI---SME 143 (213)
Q Consensus 77 ---PT~~~rq----G~QYRSaIy~~~~eq~~~q~~~a~~~-~~~~~~~~~~k--vTEi~p~~~F~pAE~YHQ~Y---~p~ 143 (213)
||+.|+| |+||||+||++|++ |+++|+++ +....+..+.+ +|||+|+++|||||+|||+| ||.
T Consensus 83 ~hDPt~~~~Qg~D~G~QYRS~If~~~~e----Q~~~a~~~~~~~~~~~~~~~~i~Tei~p~~~Fy~AEeyHQ~Yl~k~p~ 158 (186)
T PRK13014 83 THDPTQLNRQGPDRGEQYRSAIFYHDEE----QKKVAEAYIAQLDEAGIFKKPIVTPIKPYKNFYPAEDYHQDYLKKNPT 158 (186)
T ss_pred hcCCCccCCCCCCCCCCceEEEEeCCHH----HHHHHHHHHHHHHhccccCCCcEEEEecCCCeeeCHHHHHHHHHhCCC
Confidence 8888898 99999999999995 78888874 22223334655 99999999999999999999 894
Q ss_pred -CCccchhhhhc
Q psy9124 144 -SSCSTFLLVSG 154 (213)
Q Consensus 144 -~yC~~~l~~s~ 154 (213)
+||+..+.+++
T Consensus 159 ~~yc~~~~~~~~ 170 (186)
T PRK13014 159 HPYIVYNDLPKG 170 (186)
T ss_pred CCccEEEeChhh
Confidence 89999988865
No 3
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=100.00 E-value=7.2e-49 Score=328.60 Aligned_cols=132 Identities=26% Similarity=0.428 Sum_probs=116.6
Q ss_pred CccEEEEecCCcchhhhhccCCCCeEEEEeeecCCCCCCCcccccccc-----------cccchhhHHHHHhhcc----c
Q psy9124 13 NTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAF-----------TEQEVVVVEYCLDLFE----P 77 (213)
Q Consensus 13 ~~~~a~fagGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe~V~~~-----------~~~e~Vs~e~LL~iF~----P 77 (213)
++++|+||||||||+|+.|+++|||++|+|||+||.++||||++||++ |||++|||++||++|| |
T Consensus 2 ~~~~a~fagGCFWg~E~~f~~~~GV~~t~vGYagG~~~~PtY~~Vcsg~tgh~E~V~V~yDp~~isy~~Ll~~f~~~hDP 81 (172)
T PRK14054 2 MMETAVLAGGCFWGMEAPFDRVKGVISTRVGYTGGHVENPTYEQVCSGTTGHAEAVEITYDPAVISYRELLELFFQIHDP 81 (172)
T ss_pred CceEEEEEcCChhhhHHHHccCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCCcCCHHHHHHHHHHhCCC
Confidence 679999999999999999999999999999999999999999999975 5899999999999999 8
Q ss_pred cCCccc----cccccccccccCcccccCCchhhccc-cccccccccCC--ceEEeecCCCCCCchhhccC---CCCCCcc
Q psy9124 78 SGHGKR----RRRRDSNSSNMTQTFTYASHPHVHHH-DNHDNDTQYTK--FQENIEYTVLMPGDLYRKTI---SMESSCS 147 (213)
Q Consensus 78 T~~~rq----G~QYRSaIy~~~~eq~~~q~~~a~~~-~~~~~~~~~~k--vTEi~p~~~F~pAE~YHQ~Y---~p~~yC~ 147 (213)
|..|+| |+||||+||++|++ |+++|+++ +....+..+.+ +|||+|+++|||||+|||+| ||.+||+
T Consensus 82 t~~~~Qg~D~G~qYRS~If~~~~~----q~~~a~~~~~~~~~~~~~~~~i~Tei~~~~~Fy~AEeyHQ~Yl~k~p~~~~~ 157 (172)
T PRK14054 82 TTLNRQGNDRGTQYRSAIFYHDEE----QKEIAEASIAELQASGLFDKPIVTEVEPAETFYEAEEYHQDYLEKNPNGYCC 157 (172)
T ss_pred CccCCCCCCCCcCceeEEEeCCHH----HHHHHHHHHHHHHHhcccCCCcEEEEecCCCceECHHHHHHHHHhCCCCcce
Confidence 888888 99999999999995 78888874 22222222555 89999999999999999999 8977765
Q ss_pred c
Q psy9124 148 T 148 (213)
Q Consensus 148 ~ 148 (213)
.
T Consensus 158 ~ 158 (172)
T PRK14054 158 I 158 (172)
T ss_pred e
Confidence 4
No 4
>PRK00058 methionine sulfoxide reductase A; Provisional
Probab=100.00 E-value=2.7e-48 Score=334.20 Aligned_cols=134 Identities=24% Similarity=0.371 Sum_probs=118.9
Q ss_pred CCCccEEEEecCCcchhhhhccCCCCeEEEEeeecCCCCCCCcccccccc-----------cccchhhHHHHHhhcc---
Q psy9124 11 QNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAF-----------TEQEVVVVEYCLDLFE--- 76 (213)
Q Consensus 11 ~~~~~~a~fagGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe~V~~~-----------~~~e~Vs~e~LL~iF~--- 76 (213)
++++++|+||||||||+|++|++++||++|+|||+||..+||||++||++ |||++|||++||++||
T Consensus 42 ~~~~~~a~fagGCFWg~E~~F~~l~GV~~t~vGYagG~~~~PtY~~VcsG~tgH~EaV~V~YDp~~ISy~~LL~~Ff~~h 121 (213)
T PRK00058 42 PEGMEQAIFGMGCFWGAERLFWQLPGVYSTAVGYAGGYTPNPTYREVCSGRTGHAEVVRVVYDPAVISYEQLLQVFWENH 121 (213)
T ss_pred CCCccEEEEEccCcchhHHHHhcCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHHHHhc
Confidence 46799999999999999999999999999999999999999999999986 5899999999999999
Q ss_pred -ccCCccc----cccccccccccCcccccCCchhhccccccccccc-----cCC-ceEEeecCCCCCCchhhccC---CC
Q psy9124 77 -PSGHGKR----RRRRDSNSSNMTQTFTYASHPHVHHHDNHDNDTQ-----YTK-FQENIEYTVLMPGDLYRKTI---SM 142 (213)
Q Consensus 77 -PT~~~rq----G~QYRSaIy~~~~eq~~~q~~~a~~~~~~~~~~~-----~~k-vTEi~p~~~F~pAE~YHQ~Y---~p 142 (213)
||..|+| |+||||+|||+|++ |++.|+++ +...++. ..+ +|||+|++.|||||+|||+| ||
T Consensus 122 DPt~~n~QG~D~G~QYRS~Ify~~~e----Q~~~a~~~-~~~~~~~~~~~~~~~i~TeI~~~~~Fy~AEeyHQ~Yl~k~p 196 (213)
T PRK00058 122 DPTQGMRQGNDVGTQYRSAIYTLTPE----QLAAAEAS-REAYQQALAAAGDGPITTEIAPAPPFYYAEDYHQQYLAKNP 196 (213)
T ss_pred CCcccCCCCCCCCcCceEEEEeCCHH----HHHHHHHH-HHHHHHHhhhccCCCeEEEEecCCCcccCHHHHHHHHHhCC
Confidence 8888998 99999999999995 78888874 2222221 234 99999999999999999999 89
Q ss_pred CCCccch
Q psy9124 143 ESSCSTF 149 (213)
Q Consensus 143 ~~yC~~~ 149 (213)
.+|||.+
T Consensus 197 ~~yc~~~ 203 (213)
T PRK00058 197 NGYCGLG 203 (213)
T ss_pred CCccccC
Confidence 9999953
No 5
>PF01625 PMSR: Peptide methionine sulfoxide reductase; InterPro: IPR002569 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []. It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represent MsrA, the crystal structure of which has been determined in a number of organisms. In Mycobacterium tuberculosis, the MsrA structure has been determined to 1.5 Angstrom resolution []. In contrast to the three catalytic cysteine residues found in previously characterised MsrA structures, M. tuberculosis MsrA represents a class containing only two functional cysteine residues. The overall structure shows no resemblance to the structures of MsrB (IPR002579 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. In a number of pathogenic bacteria including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor, 0019538 protein metabolic process, 0055114 oxidation-reduction process; PDB: 2GT3_A 1FF3_B 2IEM_A 3E0M_D 2J89_A 3PIN_B 3PIM_B 3PIL_B 2L90_A 3BQF_A ....
Probab=100.00 E-value=2.8e-48 Score=320.18 Aligned_cols=129 Identities=26% Similarity=0.439 Sum_probs=112.1
Q ss_pred cEEEEecCCcchhhhhccCCCCeEEEEeeecCCCCCCCcccccccc-----------cccchhhHHHHHhhcc----ccC
Q psy9124 15 KTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAF-----------TEQEVVVVEYCLDLFE----PSG 79 (213)
Q Consensus 15 ~~a~fagGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe~V~~~-----------~~~e~Vs~e~LL~iF~----PT~ 79 (213)
|+|+||||||||+|++|+++|||++|+|||+||..++|||++||++ +||++|||++||++|| ||.
T Consensus 1 e~a~fa~GCFW~~e~~f~~~~GV~~t~vGYagG~~~~PtY~~v~~g~tgh~E~V~V~yD~~~is~~~Ll~~f~~~~dPt~ 80 (155)
T PF01625_consen 1 EKAYFAGGCFWGVEAAFRRLPGVISTRVGYAGGTTPNPTYRQVCSGRTGHAEAVRVTYDPSVISYEELLDVFFRIHDPTQ 80 (155)
T ss_dssp EEEEEEESSHHHHHHHHHTSTTEEEEEEEEESSSSSS--HHHHHTTTTT-EEEEEEEEETTTS-HHHHHHHHHHHS-TTS
T ss_pred CEEEEecCCCeEhHHHHhhCCCEEEEEecccCCCCCCCcceeeecCCCCCeEEEEEEECCCcccHHHHHHHHHHhcCCcc
Confidence 5899999999999999999999999999999999999999999986 5899999999999999 999
Q ss_pred Cccc----cccccccccccCcccccCCchhhccccccccccc-cCC--ceEEeecCCCCCCchhhccC---CCCCCccc
Q psy9124 80 HGKR----RRRRDSNSSNMTQTFTYASHPHVHHHDNHDNDTQ-YTK--FQENIEYTVLMPGDLYRKTI---SMESSCST 148 (213)
Q Consensus 80 ~~rq----G~QYRSaIy~~~~eq~~~q~~~a~~~~~~~~~~~-~~k--vTEi~p~~~F~pAE~YHQ~Y---~p~~yC~~ 148 (213)
.|+| |+||||+||++|++ |+.+|+++ +...+.. +.+ +|||+|++.|||||+|||+| ||..||+.
T Consensus 81 ~~~Qg~d~G~qYrs~If~~~~~----q~~~a~~~-~~~~~~~~~~~~i~tei~p~~~Fy~AE~yHQ~Yl~k~p~~yc~~ 154 (155)
T PF01625_consen 81 VNGQGNDRGTQYRSAIFYHDEE----QKKIAEAS-IAELQAKRFGRPIVTEIEPLKNFYPAEEYHQKYLEKNPNGYCHY 154 (155)
T ss_dssp TSEETTEESGGG-EEEEESSHH----HHHHHHHH-HHHHHHHTTSSSBS-EEEECEEEEEHHGGGTTHHHHSTTSTTSS
T ss_pred cccccCcccccceeEEecCCHH----HHHHHHHH-HHHHHHhcCCCCeEEEEecCCcEEECHHHHHHHHHhCCcccEec
Confidence 8888 99999999999995 78888885 3333333 555 99999999999999999999 99999985
No 6
>TIGR00401 msrA methionine-S-sulfoxide reductase. This model describes peptide methionine sulfoxide reductase (MsrA), a repair enzyme for proteins that have been inactivated by oxidation. The enzyme from E. coli is coextensive with this model and has enzymatic activity. However, in all completed genomes in which this module is present, a second protein module, described in TIGR00357, is also found, and in several cases as part of the same polypeptide chain: N-terminal to this module in Helicobacter pylori and Haemophilus influenzae (as in PilB of Neisseria gonorrhoeae) but C-terminal to it in Treponema pallidum. PilB, containing both domains, has been shown to be important for the expression of adhesins in certain pathogens.
Probab=100.00 E-value=2e-47 Score=313.40 Aligned_cols=122 Identities=25% Similarity=0.396 Sum_probs=109.7
Q ss_pred cEEEEecCCcchhhhhccCCCCeEEEEeeecCCCCCCCcccccccc-----------cccchhhHHHHHhhcc----ccC
Q psy9124 15 KTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAF-----------TEQEVVVVEYCLDLFE----PSG 79 (213)
Q Consensus 15 ~~a~fagGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe~V~~~-----------~~~e~Vs~e~LL~iF~----PT~ 79 (213)
++|+||||||||+|++|+++|||++|+|||+||..+||+|++||++ +||.+|||++||++|| ||.
T Consensus 1 ~~~~~agGCFWg~E~~f~~~~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~E~V~V~yDp~~is~~~Ll~~f~~~hdPt~ 80 (149)
T TIGR00401 1 EIATFAGGCFWGVEKYFWLIPGVYSTAVGYTGGYTPNPTYEEVCSGDTGHAEAVQVTYDPKVISYEELLDVFWEIHDPTQ 80 (149)
T ss_pred CEEEEecCCchhhHHHHhcCCCEEEEEEeeCCCCCCCCChhhcccCCCCceEEEEEEECCCcCcHHHHHHHHHHhCCCCc
Confidence 5799999999999999999999999999999999999999999986 5899999999999999 888
Q ss_pred Cccc----cccccccccccCcccccCCchhhccc-cccccccccCC--ceEEeecCCCCCCchhhccC
Q psy9124 80 HGKR----RRRRDSNSSNMTQTFTYASHPHVHHH-DNHDNDTQYTK--FQENIEYTVLMPGDLYRKTI 140 (213)
Q Consensus 80 ~~rq----G~QYRSaIy~~~~eq~~~q~~~a~~~-~~~~~~~~~~k--vTEi~p~~~F~pAE~YHQ~Y 140 (213)
.|+| |+||||+||++|++ |++.|+++ +....+..+.+ +|||+|+++|||||+|||+|
T Consensus 81 ~~~Qg~d~G~qYRs~If~~~~~----q~~~a~~~~~~~~~~~~~~~~i~tei~~~~~Fy~AE~yHQ~Y 144 (149)
T TIGR00401 81 GNRQGNDIGTQYRSGIYYHSDE----QEKAARASKERLQAAANYGDPIVTEIEPAENFYYAEEYHQQY 144 (149)
T ss_pred CCCCCCCCCCCceEEEEeCCHH----HHHHHHHHHHHHHHhcccCCCeEEEEecCCCeeecHHHHHHH
Confidence 8888 99999999999995 78888874 22222335665 99999999999999999999
No 7
>PRK05528 methionine sulfoxide reductase A; Provisional
Probab=100.00 E-value=5.5e-46 Score=306.98 Aligned_cols=131 Identities=16% Similarity=0.212 Sum_probs=114.0
Q ss_pred ccEEEEecCCcchhhhhccCCCCeEEEEeeecCCCCCCCccc------ccccccccchhhHHHHHhhcc----ccCCccc
Q psy9124 14 TKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYR------NIPAFTEQEVVVVEYCLDLFE----PSGHGKR 83 (213)
Q Consensus 14 ~~~a~fagGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe------~V~~~~~~e~Vs~e~LL~iF~----PT~~~rq 83 (213)
|++|+||||||||+|++|+++|||++|+|||+||..+||+.. -|...|||.+|||++||++|| ||..|+|
T Consensus 1 ~~~a~fagGCFWg~E~~f~~l~GV~~t~vGYagG~~~~p~~~~tgH~E~V~V~yDp~~isy~~LL~~f~~~hdPt~~~~Q 80 (156)
T PRK05528 1 METVYFAGGCLWGVQAFFKTLPGVIHTEAGRANGRTSTLDGPYDGYAECVKTHFDPRMVSITDLMGYLFEIIDPYSVNKQ 80 (156)
T ss_pred CCEEEEecCCchhhHHHHhcCCCEEEEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCcCCHHHHHHHHHHhCCccccccc
Confidence 578999999999999999999999999999999999998633 366678999999999999999 8888888
Q ss_pred ----cccccccccccCcccccCCchhhccccccccccccCC-ceEEeecCCCCCCchhhccC---CCCCCccchh
Q psy9124 84 ----RRRRDSNSSNMTQTFTYASHPHVHHHDNHDNDTQYTK-FQENIEYTVLMPGDLYRKTI---SMESSCSTFL 150 (213)
Q Consensus 84 ----G~QYRSaIy~~~~eq~~~q~~~a~~~~~~~~~~~~~k-vTEi~p~~~F~pAE~YHQ~Y---~p~~yC~~~l 150 (213)
|+|||||||++|++ |++.|++. ....++. .+ +|||.|+++|||||+|||+| ||.+||+..+
T Consensus 81 g~D~G~QYRS~If~~d~e----Q~~~a~~~-~~~~~~~-~~i~Tei~~~~~Fy~AE~yHQ~Yl~k~p~~yc~~~~ 149 (156)
T PRK05528 81 GNDVGEKYRTGIYSEVDD----HLIEARQF-IERREDA-DKIAVEVLPLTNYVKSAEEHQDRLEKFPEDYCHIPK 149 (156)
T ss_pred CCCCCCCceEEEEeCCHH----HHHHHHHH-HHHHhcC-CCeEEEEecCCCeeecHHHHHHHHHhCCCCCcccCh
Confidence 99999999999995 78888874 2222221 24 89999999999999999999 8999998743
No 8
>KOG1635|consensus
Probab=100.00 E-value=8e-46 Score=308.65 Aligned_cols=135 Identities=21% Similarity=0.401 Sum_probs=119.8
Q ss_pred CCCCCccEEEEecCCcchhhhhccCCCCeEEEEeeecCCCCCCCcccccccc-----------cccchhhHHHHHhhcc-
Q psy9124 9 NGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAF-----------TEQEVVVVEYCLDLFE- 76 (213)
Q Consensus 9 ~~~~~~~~a~fagGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe~V~~~-----------~~~e~Vs~e~LL~iF~- 76 (213)
.++++++.|+||+|||||+|+.|+++|||++|+|||+||.+.||||++||++ |||++|+|++|||+||
T Consensus 19 ~~~~g~q~a~fg~GCFWg~E~a~~~l~gV~~T~vGYagG~~~nPtYk~vc~~tT~HaEvvrV~ydpk~~sy~~Lld~Fw~ 98 (191)
T KOG1635|consen 19 VPAPGLQFATFGAGCFWGVELAYQRLPGVVRTEVGYAGGITDNPTYKDVCSGTTNHAEVVRVQYDPKVISYEELLDFFWS 98 (191)
T ss_pred CCCCccceeeeeccchhhHHHHHhhcCCeEEEeecccCCccCCcchhhhccCCCCcceEEEEEeCcccccHHHHHHHHHH
Confidence 3456689999999999999999999999999999999999999999999994 5899999999999999
Q ss_pred ---ccCCccc----cccccccccccCcccccCCchhhcccccccccccc-CC-ceEEeecCCCCCCchhhccC---CC-C
Q psy9124 77 ---PSGHGKR----RRRRDSNSSNMTQTFTYASHPHVHHHDNHDNDTQY-TK-FQENIEYTVLMPGDLYRKTI---SM-E 143 (213)
Q Consensus 77 ---PT~~~rq----G~QYRSaIy~~~~eq~~~q~~~a~~~~~~~~~~~~-~k-vTEi~p~~~F~pAE~YHQ~Y---~p-~ 143 (213)
||+.||| |+||||+||++++| |+.+|.++ +++.++++ ++ +|+|+|++.||.||+|||+| +| .
T Consensus 99 ~HdPtt~n~QG~D~GtQYRS~I~~~s~e----q~k~A~~s-~e~~Q~k~~~kI~T~I~p~~kFY~AE~yHQqYl~K~~~~ 173 (191)
T KOG1635|consen 99 RHDPTTLNRQGNDVGTQYRSGIYTYSPE----QEKLARES-KEREQKKWNGKIVTEILPAKKFYRAEEYHQQYLSKNPRN 173 (191)
T ss_pred cCCchhhhccCCcccceeeeeeeeCCHH----HHHHHHHH-HHHHHhccCCcceEEEeeccchhhchHHHHHHHhhCCCC
Confidence 8888998 99999999999995 78888876 44555554 44 99999999999999999999 77 7
Q ss_pred CCccc
Q psy9124 144 SSCST 148 (213)
Q Consensus 144 ~yC~~ 148 (213)
|||..
T Consensus 174 Gy~~s 178 (191)
T KOG1635|consen 174 GYAQS 178 (191)
T ss_pred ccccc
Confidence 88543
No 9
>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional
Probab=100.00 E-value=1.1e-44 Score=323.23 Aligned_cols=135 Identities=21% Similarity=0.345 Sum_probs=119.0
Q ss_pred CCCccEEEEecCCcchhhhhccCCCCeEEEEeeecCCCCCCCcccccccc-----------cccchhhHHHHHhhcc---
Q psy9124 11 QNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAF-----------TEQEVVVVEYCLDLFE--- 76 (213)
Q Consensus 11 ~~~~~~a~fagGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe~V~~~-----------~~~e~Vs~e~LL~iF~--- 76 (213)
+..+++|+||||||||+|++|+++|||++|+|||+||.++||||++||++ |||.+|||++||++||
T Consensus 124 ~~~~~~~~fagGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtY~~VcsG~tgH~EaV~V~yDp~~isy~~LL~~F~~~h 203 (283)
T PRK05550 124 AYDTEEAIFAGGCFWGVEYYFKKLPGVLSVESGYTGGDTKNPTYEQVCSGTTGHAEAVRVEFDPAKISYETLLKVFFEIH 203 (283)
T ss_pred cccceEEEEecCCchhhhhhHhhCcCEEEEEEeeCCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHHHhhc
Confidence 45689999999999999999999999999999999999999999999986 5899999999999998
Q ss_pred -ccCCccc----cccccccccccCcccccCCchhhccccccccccccCC-ceEEeecCCCCCCchhhccC---CCCC-Cc
Q psy9124 77 -PSGHGKR----RRRRDSNSSNMTQTFTYASHPHVHHHDNHDNDTQYTK-FQENIEYTVLMPGDLYRKTI---SMES-SC 146 (213)
Q Consensus 77 -PT~~~rq----G~QYRSaIy~~~~eq~~~q~~~a~~~~~~~~~~~~~k-vTEi~p~~~F~pAE~YHQ~Y---~p~~-yC 146 (213)
||..|+| |+||||+||++|++ |+++|+++ +...++...+ +|||+|+++|||||+|||+| ||.+ ||
T Consensus 204 DPt~~~~Qg~D~G~QYRS~If~~d~e----q~~~A~~~-~~~~~~~~~~i~TeI~~l~~Fy~AEeyHQ~Yl~k~p~~~yc 278 (283)
T PRK05550 204 DPTQLNRQGPDIGTQYRSAIFYHDDE----QKQIAEKL-IAELTKKGYPVVTEVEAAGPFYPAEDYHQDYYEKHGKQPYC 278 (283)
T ss_pred CCCccCCCCCCCCcCceEEEEeCCHH----HHHHHHHH-HHHHHhcCCceEEEEeeCCCeeECHHHHHHHHHhCCCCCee
Confidence 8888888 99999999999995 78888875 2223322225 99999999999999999999 8865 99
Q ss_pred cchh
Q psy9124 147 STFL 150 (213)
Q Consensus 147 ~~~l 150 (213)
+..+
T Consensus 279 ~~~~ 282 (283)
T PRK05550 279 HIVV 282 (283)
T ss_pred eeeC
Confidence 8754
No 10
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=100.00 E-value=3.3e-44 Score=342.27 Aligned_cols=137 Identities=21% Similarity=0.377 Sum_probs=123.9
Q ss_pred CCCccEEEEecCCcchhhhhccCCCCeEEEEeeecCCCCCCCcccccccc----------cccchhhHHHHHhhcc----
Q psy9124 11 QNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAF----------TEQEVVVVEYCLDLFE---- 76 (213)
Q Consensus 11 ~~~~~~a~fagGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe~V~~~----------~~~e~Vs~e~LL~iF~---- 76 (213)
+.++++|+||||||||+|++|+++|||++|+||||||.++||||++||++ |||.+|||++||++||
T Consensus 195 ~~~~~~~~~agGCFWg~e~~f~~~~GV~~t~~GYagG~~~~PtY~~Vc~gtgH~E~V~V~yDp~~is~~~Ll~~f~~~~d 274 (521)
T PRK14018 195 IMNTRTIYLAGGCFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVYRHSGHAETVKVTYDADKLSLDTILQYYFRVVD 274 (521)
T ss_pred CCCccEEEEecCCchhhHHHHccCCCEEEEEEeeCCCCCCCCChhhccCCCCcEEEEEEEECCCcCcHHHHHHHHHHhCC
Confidence 56789999999999999999999999999999999999999999999875 5899999999999999
Q ss_pred ccCCccc----cccccccccccCcccccCCchhhccccccccccccCC--ceEEeecCCCCCCchhhccC---CCCCCcc
Q psy9124 77 PSGHGKR----RRRRDSNSSNMTQTFTYASHPHVHHHDNHDNDTQYTK--FQENIEYTVLMPGDLYRKTI---SMESSCS 147 (213)
Q Consensus 77 PT~~~rq----G~QYRSaIy~~~~eq~~~q~~~a~~~~~~~~~~~~~k--vTEi~p~~~F~pAE~YHQ~Y---~p~~yC~ 147 (213)
||..|+| |+||||+|||+|++ |++.|+++ ....++++.+ +|||.|++.|||||+|||+| ||.+||+
T Consensus 275 Pt~~~~Qg~d~G~qYrs~I~~~~~e----q~~~a~~~-~~~~~~~~~~~i~tei~~~~~Fy~AE~yHQ~Yl~k~p~~yc~ 349 (521)
T PRK14018 275 PTSLNKQGNDTGTQYRSGVYYTDPA----DKAVIAAA-LKREQQKYQLPLVVENEPLKNFYDAEEYHQDYLIKNPNGYCH 349 (521)
T ss_pred CccccccCCCCCCCceEEEEeCCHH----HHHHHHHH-HHHHHHHcCCCeEEEEecCCCeeecHHHHHHHHHhCCCceeE
Confidence 9999988 99999999999995 78888875 3334455665 99999999999999999999 8999999
Q ss_pred chhhh
Q psy9124 148 TFLLV 152 (213)
Q Consensus 148 ~~l~~ 152 (213)
..+..
T Consensus 350 ~~~~~ 354 (521)
T PRK14018 350 IDLRK 354 (521)
T ss_pred eeccc
Confidence 87764
No 11
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=82.01 E-value=0.75 Score=31.15 Aligned_cols=46 Identities=15% Similarity=0.230 Sum_probs=35.3
Q ss_pred cCCcchhhhhccCCCCeEEEEeeecCCCCCCCcccccccccccchhhHHHHHhh
Q psy9124 21 MGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQEVVVVEYCLDL 74 (213)
Q Consensus 21 gGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe~V~~~~~~e~Vs~e~LL~i 74 (213)
++|-+-++..+.++|||.++.+=+..+ .|...+++..+++++|.+.
T Consensus 10 ~~C~~~v~~~l~~~~GV~~v~vd~~~~--------~v~v~~~~~~~~~~~i~~~ 55 (62)
T PF00403_consen 10 EGCAKKVEKALSKLPGVKSVKVDLETK--------TVTVTYDPDKTSIEKIIEA 55 (62)
T ss_dssp HHHHHHHHHHHHTSTTEEEEEEETTTT--------EEEEEESTTTSCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCcEEEEECCCC--------EEEEEEecCCCCHHHHHHH
Confidence 578899999999999999999977765 4444666666777766654
No 12
>PF08098 ATX_III: Anemonia sulcata toxin III family; InterPro: IPR012509 This entry occurs within the Anemonia sulcata toxin III (ATX III) neurotoxin family. ATX III is a neurotoxin that is produced by sea anemone; it adopts a compact structure containing four reverse turns and two other chain reversals, but no regular alpha-helix or beta-sheet. A hydrophobic patch found on the surface of the peptide may constitute part of the sodium channel binding surface [].; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0042151 nematocyst; PDB: 1ANS_A.
Probab=79.35 E-value=0.73 Score=27.54 Aligned_cols=8 Identities=38% Similarity=1.078 Sum_probs=5.0
Q ss_pred ecCCcchh
Q psy9124 20 AMGCFWAP 27 (213)
Q Consensus 20 agGCFWg~ 27 (213)
-||||||-
T Consensus 12 ~~gC~WGQ 19 (27)
T PF08098_consen 12 TGGCPWGQ 19 (27)
T ss_dssp TTT-SSS-
T ss_pred ecCCcccc
Confidence 47899994
No 13
>PF03852 Vsr: DNA mismatch endonuclease Vsr; InterPro: IPR004603 This entry represents VSR (very short patch repair) endonucleases, which occur in a variety of bacteria. VSR recognises a TG mismatched base pair, generated after spontaneous deamination of methylated cytosines, and cleaves the phosphate backbone on the 5' side of the thymine []. GT mismatches can lead to C-to-T transition mutations if not repaired. VSR repairs the mismatches in favour of the G-containing strand. In Escherichia coli, this endonuclease nicks double-stranded DNA within the sequence CT(AT)GN or NT(AT)GG next to the thymidine residue, which is mismatched to 2'-deoxyguanosine []. The incision is mismatch-dependent and strand specific. The structure of VSR is similar to the core structure of restriction endonucleases, which have a 3-layer alpha/beta/alpha topology []. ; GO: 0004519 endonuclease activity, 0006298 mismatch repair; PDB: 1ODG_A 1VSR_A 1CW0_A.
Probab=65.12 E-value=3.6 Score=30.55 Aligned_cols=14 Identities=43% Similarity=1.061 Sum_probs=11.2
Q ss_pred CccEEEEecCCcch
Q psy9124 13 NTKTAVLAMGCFWA 26 (213)
Q Consensus 13 ~~~~a~fagGCFWg 26 (213)
..+.|+|--||||.
T Consensus 55 ~~k~aIFVdGCFWH 68 (75)
T PF03852_consen 55 KYKIAIFVDGCFWH 68 (75)
T ss_dssp GGTEEEEEE-TTTT
T ss_pred CCCEEEEEecceeC
Confidence 35889999999996
No 14
>PF03622 IBV_3B: IBV 3B protein ; InterPro: IPR005295 These proteins are the product of ORF 3B from Infectious bronchitis virus). Currently, the function of this protein remains unknown [].
Probab=39.96 E-value=16 Score=26.23 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=18.4
Q ss_pred cCCCCCccEEEEecCCcchhhh
Q psy9124 8 TNGQNNTKTAVLAMGCFWAPDG 29 (213)
Q Consensus 8 ~~~~~~~~~a~fagGCFWg~E~ 29 (213)
|+.-++.+.+|.-+|.||-.|.
T Consensus 31 t~iFDPFE~cyyrgGsfwEieS 52 (64)
T PF03622_consen 31 TEIFDPFEVCYYRGGSFWEIES 52 (64)
T ss_pred hhhcCCeeEEEEecCcEEEeec
Confidence 4455788999999999999886
No 15
>COG3727 Vsr DNA G:T-mismatch repair endonuclease [DNA replication, recombination, and repair]
Probab=32.19 E-value=24 Score=29.32 Aligned_cols=18 Identities=22% Similarity=0.743 Sum_probs=14.3
Q ss_pred CCccEEEEecCCcchhhh
Q psy9124 12 NNTKTAVLAMGCFWAPDG 29 (213)
Q Consensus 12 ~~~~~a~fagGCFWg~E~ 29 (213)
+..+.++|--||||.--+
T Consensus 55 ~~y~~viFvHGCFWh~H~ 72 (150)
T COG3727 55 PKYRCVIFVHGCFWHGHH 72 (150)
T ss_pred cCceEEEEEeeeeccCCc
Confidence 456889999999998433
No 16
>KOG2003|consensus
Probab=31.00 E-value=16 Score=36.21 Aligned_cols=43 Identities=26% Similarity=0.561 Sum_probs=23.8
Q ss_pred CchhhccCCCCCCccchhhhhccchh--hhHHHHHHHHHHHHHHhhhh
Q psy9124 133 GDLYRKTISMESSCSTFLLVSGVLGG--LLFISAFLMCYLASRLQTAL 178 (213)
Q Consensus 133 AE~YHQ~Y~p~~yC~~~l~~s~~l~~--~~~~~~~i~~~lA~Rlngy~ 178 (213)
+|+|.---|....|--.|..-+ |.. +--+.+.+.|. .+|||.|
T Consensus 510 ~~~ykeal~ndasc~ealfnig-lt~e~~~~ldeald~f--~klh~il 554 (840)
T KOG2003|consen 510 AEFYKEALNNDASCTEALFNIG-LTAEALGNLDEALDCF--LKLHAIL 554 (840)
T ss_pred HHHHHHHHcCchHHHHHHHHhc-ccHHHhcCHHHHHHHH--HHHHHHH
Confidence 3444444355677888887633 332 22235666776 4677654
No 17
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=30.66 E-value=37 Score=24.03 Aligned_cols=48 Identities=17% Similarity=0.221 Sum_probs=36.4
Q ss_pred ecCCcchhhhhccCCCCeEEEEeeecCCCCCCCcccccccccccchhhHHHHHhhc
Q psy9124 20 AMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQEVVVVEYCLDLF 75 (213)
Q Consensus 20 agGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtYe~V~~~~~~e~Vs~e~LL~iF 75 (213)
.++|.=-++..+.+++||.++.+-...|. +-..++...++.++|.+..
T Consensus 13 C~~C~~~V~~al~~v~gv~~v~v~l~~~~--------~~V~~d~~~~~~~~i~~ai 60 (71)
T COG2608 13 CGHCVKTVEKALEEVDGVASVDVDLEKGT--------ATVTFDSNKVDIEAIIEAI 60 (71)
T ss_pred cHHHHHHHHHHHhcCCCeeEEEEEcccCe--------EEEEEcCCcCCHHHHHHHH
Confidence 45677778888999999999999988875 3335667677777777654
No 18
>PF02083 Urotensin_II: Urotensin II; InterPro: IPR001483 Urotensin II, a small peptide that contains a disulphide bridge, was originally isolated from the caudal portion of the spinal cord of teleost and elasmobranch fish []. The peptide has also been found in the brain of frogs []. Urotensin II seems to be involved in smooth muscle stimulation.; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=29.32 E-value=18 Score=18.03 Aligned_cols=6 Identities=50% Similarity=1.669 Sum_probs=4.3
Q ss_pred cCCcch
Q psy9124 21 MGCFWA 26 (213)
Q Consensus 21 gGCFWg 26 (213)
.-|||-
T Consensus 4 ~~CFWK 9 (12)
T PF02083_consen 4 SECFWK 9 (12)
T ss_pred cchhhh
Confidence 459994
No 19
>KOG1402|consensus
Probab=23.36 E-value=51 Score=31.47 Aligned_cols=18 Identities=22% Similarity=0.152 Sum_probs=16.1
Q ss_pred CCCCCccEEEEecCCcch
Q psy9124 9 NGQNNTKTAVLAMGCFWA 26 (213)
Q Consensus 9 ~~~~~~~~a~fagGCFWg 26 (213)
++|.+-+++.++-|||||
T Consensus 145 ~ip~nka~il~~~~nFhG 162 (427)
T KOG1402|consen 145 NIPKNKAKILSAENNFHG 162 (427)
T ss_pred cCCccceeEEEecccccC
Confidence 467788999999999999
No 20
>PF02682 AHS1: Allophanate hydrolase subunit 1; InterPro: IPR003833 Allophanate hydrolase catalyses the second reaction in an ATP-dependent, two-step degradation of urea to ammonia and C02. This follows the action of the biotin-containing urea carboxylase. Saccharomyces cerevisiae can use urea as a sole nitrogen source via this degradation pathway []. In yeast, the fusion of allophanate hydrolase to urea carboxylase is called urea amidolyase. In bacteria, the second step in the urea degradation pathway is also the ATP-dependent allophanate hydrolase. The gene encoding this enzyme is found adjacent to the urea carboxylase gene []. Allophanate hydrolase has strict substrate specificity, as analogues of allophanate are not hydrolysed by it []. This domain represents subunit 1 of allophanate hydrolase (AHS1), which is found in urea carboxylase.; PDB: 3VA7_A 3MML_H 3OEP_A 3OPF_C 3ORE_A 2ZP2_A 2KWA_A 2PHC_B.
Probab=21.28 E-value=70 Score=27.43 Aligned_cols=41 Identities=7% Similarity=0.025 Sum_probs=30.2
Q ss_pred chhhhhccC--CCCeEEEEeeecCCCCCCCcccccccccccchhhHHHHHhhc
Q psy9124 25 WAPDGLFGT--TKGVLRTKVGYSGGTTENPTYRNIPAFTEQEVVVVEYCLDLF 75 (213)
Q Consensus 25 Wg~E~~F~~--~~GV~~t~vGYagG~~~nPtYe~V~~~~~~e~Vs~e~LL~iF 75 (213)
|...+.+++ ++||+++..+|. .|..+||+..++...|.+..
T Consensus 28 ~al~~~l~~~~~~gi~e~vp~~~----------sllV~fdp~~~~~~~l~~~l 70 (202)
T PF02682_consen 28 LALARALRAAPLPGIVEVVPAYR----------SLLVHFDPLRIDRAALRAAL 70 (202)
T ss_dssp HHHHHHHHHHT-TTEEEEEEESS----------EEEEEESTTTSHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCeEEeecccc----------EEEEEEcCCcCCHHHHHHHH
Confidence 444555555 899999886664 78889999999888777655
Done!