RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9124
(213 letters)
>1nwa_A Peptide methionine sulfoxide reductase MSRA; oxidoreductase,
product complex, structural genomics, PSI, protein
structure initiative; 1.50A {Mycobacterium
tuberculosis} SCOP: d.58.28.1
Length = 203
Score = 76.9 bits (190), Expect = 1e-17
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 4 TMSQTNGQNNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQ 63
+ + + A+LA GCFW L GV+ T+VGYSGG N TYRN T
Sbjct: 15 GHIEGRHMTSNQKAILAGGCFWGLQDLIRNQPGVVSTRVGYSGGNIPNATYRNHG--THA 72
Query: 64 EVVVVEY 70
E V + +
Sbjct: 73 EAVEIIF 79
>3bqh_A PILB, peptide methionine sulfoxide reductase MSRA/MSRB;
methionine sulfoxide reductase A, oxidized form, elect
transport; 1.95A {Neisseria meningitidis} PDB: 3bqe_A
3bqf_A* 3bqg_A
Length = 193
Score = 74.9 bits (185), Expect = 4e-17
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 13 NTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQ----EVVVV 68
NT+T LA GCFW + F GV+ GY+ G T+NP+Y ++ E V V
Sbjct: 1 NTRTIYLAGGCFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDV--SYRHTGHAETVKV 58
Query: 69 EY 70
Y
Sbjct: 59 TY 60
>1fvg_A Peptide methionine sulfoxide reductase; oxidoreductase; 1.60A {Bos
taurus} SCOP: d.58.28.1 PDB: 1fva_A 2l90_A*
Length = 199
Score = 73.4 bits (181), Expect = 2e-16
Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
Query: 12 NNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQ----EVVV 67
T+ AV MGCFW + F T KGV T+VG++GG T NPTY+ + + + EVV
Sbjct: 41 EGTQMAVFGMGCFWGAERKFWTLKGVYSTQVGFAGGYTPNPTYKEV--CSGKTGHAEVVR 98
Query: 68 VEY 70
V +
Sbjct: 99 VVF 101
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion,
msrab, linker, hinge, cell membrane, membrane,
multifunctional enzyme, oxidoreductase; 2.40A
{Streptococcus pneumoniae}
Length = 313
Score = 75.1 bits (185), Expect = 2e-16
Identities = 21/58 (36%), Positives = 26/58 (44%)
Query: 13 NTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQEVVVVEY 70
+ LA GCFW + F GVL T VGY+ G E Y+ + E V V Y
Sbjct: 1 HMAEIYLAGGCFWGLEEYFSRISGVLETSVGYANGQVETTNYQLLKETDHAETVQVIY 58
>2j89_A Methionine sulfoxide reductase A; MSRA, poplar, oxidoreductase;
1.7A {Populus trichocarpa}
Length = 261
Score = 73.6 bits (181), Expect = 4e-16
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 16/67 (23%)
Query: 13 NTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQ--------- 63
+ A GCFW + F GV +T+VGY+ G NPTY E
Sbjct: 93 GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYTQGLLHNPTY-------EDVCTGTTNHN 145
Query: 64 EVVVVEY 70
EVV V+Y
Sbjct: 146 EVVRVQY 152
>1ff3_A Peptide methionine sulfoxide reductase; alpha beta roll, PMSR,
MSRA, oxidoreductase; 1.90A {Escherichia coli} SCOP:
d.58.28.1 PDB: 2gt3_A 2iem_A
Length = 211
Score = 67.3 bits (165), Expect = 4e-14
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 12 NNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQ----EVVV 67
+ + A+ AMG FW + LF GV T GY+GG T NPTYR + + E V
Sbjct: 40 DGMEIAIFAMGXFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREV--CSGDTGHAEAVR 97
Query: 68 VEY 70
+ Y
Sbjct: 98 IVY 100
>3pim_A Peptide methionine sulfoxide reductase; methionine-S-sulfoxide
reductase, oxidoreductase; 1.90A {Saccharomyces
cerevisiae} PDB: 3pil_A 3pin_B
Length = 187
Score = 61.5 bits (150), Expect = 4e-12
Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 12/80 (15%)
Query: 1 MAKTMSQTNGQNNTKTAVLAMGCFWAPDGLFG--TTKGVLRTKVGYSGGTTENPTYRNIP 58
++KT+ K LA GCFW + ++ ++ KVGY+ G +
Sbjct: 8 ISKTIKYDP--AKDKLITLACGCFWGTEHMYRKYLNDRIVDCKVGYANGEESKKDSPSSV 65
Query: 59 AFTE--------QEVVVVEY 70
++ EV+ V Y
Sbjct: 66 SYKRVCGGDTDFAEVLQVSY 85
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.040
Identities = 21/130 (16%), Positives = 39/130 (30%), Gaps = 32/130 (24%)
Query: 103 HPHVHHHDNHDNDTQYT----------KFQENIE-YTVLMPGDLYRKTISMESSCSTFLL 151
H H HH D + QY F +N + V D+ + +S E ++
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQ---DMPKSILSKE-EIDHIIM 56
Query: 152 VSGVLGGLLFISAFLMCYLASRLQTA-----------LATRYH------SNNLDHFVREH 194
+ G L + L+ +Q L + S ++ +
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 195 SRKCSLNDQY 204
R + N +
Sbjct: 117 DRLYNDNQVF 126
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.25
Identities = 14/109 (12%), Positives = 32/109 (29%), Gaps = 41/109 (37%)
Query: 124 NIEYTVLMPGDLY----------RKTISM---------ESSCSTFLLVSGVLGGLLFISA 164
++E+ +L+P + K + E + L+
Sbjct: 15 SLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV-----------GK 63
Query: 165 FLMCYLASRLQTALATRYHS---NNLDHFVRE-------HSRKCSLNDQ 203
FL Y++S ++ + ++ L F H+ L +
Sbjct: 64 FL-GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQE 111
>3qyh_A CO-type nitrIle hydratase alpha subunit; cobalt, cysteine sulfinic
acid, lyase; 2.00A {Pseudomonas putida} PDB: 3qyg_A
3qxe_A 3qz9_A 3qz5_A
Length = 226
Score = 27.0 bits (59), Expect = 4.6
Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 13/70 (18%)
Query: 81 GKRRRRRDSNSSNMTQTFTYASHPHVHHHDNHDNDTQYTKFQEN------IEYTVLMPGD 134
G ++ R S SH H HHHD + + + IE ++ P
Sbjct: 5 GGQQMGRGSEFMGQ-------SHTHDHHHDGYQAPPEDIALRVKALESLLIEKGLVDPAA 57
Query: 135 LYRKTISMES 144
+ + E
Sbjct: 58 MDLVVQTYEH 67
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.131 0.396
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,154,498
Number of extensions: 177686
Number of successful extensions: 435
Number of sequences better than 10.0: 1
Number of HSP's gapped: 431
Number of HSP's successfully gapped: 12
Length of query: 213
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 123
Effective length of database: 4,188,903
Effective search space: 515235069
Effective search space used: 515235069
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.4 bits)