RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9124
         (213 letters)



>d1nwaa_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 168

 Score = 62.9 bits (152), Expect = 3e-13
 Identities = 32/134 (23%), Positives = 50/134 (37%), Gaps = 9/134 (6%)

Query: 12  NNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQEVVVVEYC 71
            + + A+LA GCFW    L     GV+ T+VGYSGG   N TYRN     E   ++ +  
Sbjct: 4   TSNQKAILAGGCFWGLQDLIRNQPGVVSTRVGYSGGNIPNATYRNHGTHAEAVEIIFDPT 63

Query: 72  LDLFEPSGHG---------KRRRRRDSNSSNMTQTFTYASHPHVHHHDNHDNDTQYTKFQ 122
           +  +               K R+  D  +S  +  F +         D   +      + 
Sbjct: 64  VTDYRTLLEFFFQIHDPTTKDRQGNDRGTSYRSAIFYFDEQQKRIALDTIADVEASGLWP 123

Query: 123 ENIEYTVLMPGDLY 136
             +   V   GD +
Sbjct: 124 GKVVTEVSPAGDFW 137


>d1ff3a_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase
           {Escherichia coli [TaxId: 562]}
          Length = 211

 Score = 58.6 bits (141), Expect = 2e-11
 Identities = 27/115 (23%), Positives = 38/115 (33%), Gaps = 6/115 (5%)

Query: 12  NNTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQEVVVVEYC 71
           +  + A+ AMGCFW  + LF    GV  T  GY+GG T NPTYR + +        V   
Sbjct: 40  DGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIV 99

Query: 72  LDLFEPS------GHGKRRRRRDSNSSNMTQTFTYASHPHVHHHDNHDNDTQYTK 120
            D    S         +                 Y S  +    +         +
Sbjct: 100 YDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLE 154


>d1fvga_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 192

 Score = 54.0 bits (129), Expect = 8e-10
 Identities = 30/119 (25%), Positives = 46/119 (38%), Gaps = 12/119 (10%)

Query: 13  NTKTAVLAMGCFWAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQEVVVVEYCL 72
            T+ AV  MGCFW  +  F T KGV  T+VG++GG T NPTY+ + +       VV    
Sbjct: 36  GTQMAVFGMGCFWGAERKFWTLKGVYSTQVGFAGGYTPNPTYKEVCSGKTGHAEVVRVVF 95

Query: 73  DLFEPSGHGKRRRRRDSNSSNMTQTFTYASHPHVHHHDNHDNDTQYTKFQENIEYTVLM 131
                       +    +   + + F     P       +D+ +QY           + 
Sbjct: 96  ------------QPEHISFEELLKVFWENHDPTQGMRQGNDHGSQYRSAIYPTSAEHVG 142


>d2chua1 c.92.2.4 (A:24-310) Enterochelin uptake protein CeuE
           {Campylobacter jejuni [TaxId: 197]}
          Length = 287

 Score = 28.3 bits (62), Expect = 0.55
 Identities = 7/45 (15%), Positives = 18/45 (40%)

Query: 25  WAPDGLFGTTKGVLRTKVGYSGGTTENPTYRNIPAFTEQEVVVVE 69
             PD +F   + V+      + G  +N       A   ++++ ++
Sbjct: 216 KNPDYIFVVDRNVILGNKERAQGILDNALVAKTKAAQNKKIIYLD 260


>d1qo8a1 a.138.1.3 (A:2-102) Flavocytochrome c3 (respiratory
           fumarate reductase), N-terminal domain {Shewanella
           frigidimarina [TaxId: 56812]}
          Length = 101

 Score = 25.6 bits (55), Expect = 2.2
 Identities = 5/47 (10%), Positives = 9/47 (19%)

Query: 71  CLDLFEPSGHGKRRRRRDSNSSNMTQTFTYASHPHVHHHDNHDNDTQ 117
           C          +        S +               H++H  D  
Sbjct: 17  CHAKPIKVTDSETHENAQCKSCHGEYAELANDKLQFDPHNSHLGDIN 63


>d1of8a_ c.1.10.4 (A:) 3-deoxy-D-arabino-heptulosonate-7-phosphate
           synthase (DAHP synthase, AroG) {Baker's yeast
           (Saccharomyces cerevisiae), tyrosine-regulated isozyme
           [TaxId: 4932]}
          Length = 346

 Score = 26.4 bits (58), Expect = 3.0
 Identities = 14/99 (14%), Positives = 21/99 (21%), Gaps = 20/99 (20%)

Query: 70  YCLDLFEPSGHGKR--------------------RRRRDSNSSNMTQTFTYASHPHVHHH 109
           Y  DL      G R                    +   D   +        A+H H    
Sbjct: 145 YLADLVSFGAIGARTTESQLHRELASGLSFPVGFKNGTDGTLNVAVDACQAAAHSHHFMG 204

Query: 110 DNHDNDTQYTKFQENIEYTVLMPGDLYRKTISMESSCST 148
                    T  + N    V++ G         +S    
Sbjct: 205 VTKHGVAAITTTKGNEHCFVILRGGKKGTNYDAKSVAEA 243


>d2d69a2 d.58.9.1 (A:8-133) Ribulose 1,5-bisphosphate
          carboxylase-oxygenase {Archaeon Pyrococcus horikoshii
          [TaxId: 53953]}
          Length = 126

 Score = 25.4 bits (56), Expect = 3.8
 Identities = 6/21 (28%), Positives = 9/21 (42%)

Query: 57 IPAFTEQEVVVVEYCLDLFEP 77
          +    E  +  + Y L LFE 
Sbjct: 68 LEKHGEGYIAKIAYPLTLFEE 88


>d2gycn1 b.34.5.6 (N:1-114) Ribosomal protein L19 {Escherichia
          coli [TaxId: 562]}
          Length = 114

 Score = 24.0 bits (52), Expect = 8.0
 Identities = 8/44 (18%), Positives = 12/44 (27%), Gaps = 2/44 (4%)

Query: 46 GGTTENPTYRNIPA--FTEQEVVVVEYCLDLFEPSGHGKRRRRR 87
           G     T R I      E+        +D       G  R+ +
Sbjct: 52 RGLHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAK 95


>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus
           cereus [TaxId: 1396]}
          Length = 251

 Score = 24.6 bits (52), Expect = 9.1
 Identities = 13/70 (18%), Positives = 22/70 (31%)

Query: 102 SHPHVHHHDNHDNDTQYTKFQENIEYTVLMPGDLYRKTISMESSCSTFLLVSGVLGGLLF 161
           S    +        T    F   +    + P ++  K  +    C   L + G  GG   
Sbjct: 173 STGDGYAWAEKAGHTITELFGGGVSVKEINPKEMSSKFTNGLYFCGEVLDIHGYTGGYNI 232

Query: 162 ISAFLMCYLA 171
            SA +   +A
Sbjct: 233 TSALVTGRIA 242


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.131    0.396 

Gapped
Lambda     K      H
   0.267   0.0416    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 748,948
Number of extensions: 31526
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 11
Length of query: 213
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 131
Effective length of database: 1,281,736
Effective search space: 167907416
Effective search space used: 167907416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.2 bits)