RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9125
(117 letters)
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 103 bits (258), Expect = 2e-28
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 1 MVIHCCGLSSPHALLDRSMQKVKQTFELSVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAG 60
++++ G+ L ++++TFE++VL+HFW + FL M + GH VT++S AG
Sbjct: 111 ILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAG 170
Query: 61 LTGQPHHTSMAASQFAVQGLSEALAQQLW--KKPNVHVTLVHIYPFLLSADLKSNIRLR 117
P + +S+FA G + L +L + V T + P ++ N
Sbjct: 171 HVSVPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLC--PNFVNTGFIKNPSTS 227
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 80.4 bits (199), Expect = 1e-19
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Query: 1 MVIHCCGLSSPHALLDRSMQKVKQTFELSVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAG 60
M+I ++ L + V+++ E++ LS+ L L PML G V +SS+AG
Sbjct: 109 MLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAAL-PMLKQSNGSIVVVSSLAG 167
Query: 61 LTGQPHHTSMAASQFAVQGLSEALAQQL-WKKPNVHVTLVH 100
P + +AS+FA+ G ++ ++ + NV +TL
Sbjct: 168 KVAYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCV 208
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B),
NAD(P)-binding rossmann-fold structural genomics,
NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Length = 207
Score = 69.5 bits (171), Expect = 5e-16
Identities = 17/100 (17%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Query: 1 MVIHCCGLSSPHALLDRSMQKVKQTFELSVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAG 60
+++H G + ++ + V++ +L+ ++L+ V +
Sbjct: 69 LLVHAVGKAGRASVREAGRDLVEEMLAAHLLTAAFVLK----HARFQKGARAVFFGAYPR 124
Query: 61 LTGQPHHTSMAASQFAVQGLSEALAQQLWKKPNVHVTLVH 100
P + AA++ A++ EA ++L + VH+ LV
Sbjct: 125 YVQVPGFAAYAAAKGALEAYLEAARKEL-LREGVHLVLVR 163
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 68.0 bits (167), Expect = 3e-15
Identities = 14/94 (14%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 7 GLSSPHALLDRSMQKVKQTFELSVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPH 66
G + + +++++ E +++S + ++ + ++ G + S A G+ +
Sbjct: 86 GTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTV-RLIGERGGVLANVLSSAAQVGKAN 144
Query: 67 HTSMAASQFAVQGLSEALAQQLWKKPNVHVTLVH 100
+ AS++ ++G E+L +L K + + ++
Sbjct: 145 ESLYCASKWGMRGFLESLRAEL-KDSPLRLVNLY 177
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 66.9 bits (164), Expect = 9e-15
Identities = 22/100 (22%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 2 VIHCCGLSSPHALLDRSMQKVKQTFELSVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAGL 61
I G + +L+ + + ++ +E++ + F E ML+ G+G + A L
Sbjct: 87 TIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQGKIFFTGATASL 146
Query: 62 TGQPHHTSMAASQFAVQGLSEALAQQLWKKPNVHVTLVHI 101
G + A+++F ++ +++++A++L K N+HV + I
Sbjct: 147 RGGSGFAAFASAKFGLRAVAQSMARELMPK-NIHVAHLII 185
>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones,
alternative binding mode, oxidoreductase; HET: TES;
1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A*
1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A*
3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A*
3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
Length = 327
Score = 66.6 bits (163), Expect = 2e-14
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 7 GLSSPHALLDRSMQKVKQTFELSVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPH 66
GL L V +++V+ +L+ FL M G G + SV GL G P
Sbjct: 92 GLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPF 151
Query: 67 HTSMAASQFAVQGLSEALAQQLWKKP-NVHVTLV 99
+ AS+FA++GL E+LA L P VH++L+
Sbjct: 152 NDVYCASKFALEGLCESLAVLL--LPFGVHLSLI 183
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.00A {Streptomyces avermitilis}
Length = 281
Score = 63.1 bits (154), Expect = 2e-13
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 18 SMQKVKQTFELSVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAV 77
+ ++++ FEL V L L M G G V +SS G ++ +A++ A+
Sbjct: 99 TERELRDLFELHVFGPARLTRALLPQMRERGSGSVVNISSFGGQLSFAGFSAYSATKAAL 158
Query: 78 QGLSEALAQQLWKKP-NVHVTLV 99
+ LSE LA ++ P + V +V
Sbjct: 159 EQLSEGLADEV--APFGIKVLIV 179
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 62.8 bits (153), Expect = 4e-13
Identities = 20/95 (21%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 7 GLSSPHALLDRSMQKVKQTFELSVLSHFWLLEEFLTPMLSSGR-GHWVTLSSVAGLTGQP 65
G+ L + + ++ + +E FL +L G GH +S AGL
Sbjct: 117 GIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLVPNA 176
Query: 66 HHTSMAASQFAVQGLSEALAQQLWKKPNVHVTLVH 100
+ +++ V GL+E LA+++ + V+++
Sbjct: 177 GLGTYGVAKYGVVGLAETLAREVKPN-GIGVSVLC 210
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 60.5 bits (147), Expect = 2e-12
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 34 FWLLEEFLTPML------SSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQ 87
+ F+ M+ GH V +S+A ++FAV+GLSE+L
Sbjct: 123 VNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAAGSPGIYNTTKFAVRGLSESLHYS 182
Query: 88 LWKKPNVHVTLVH 100
L K + V+++
Sbjct: 183 L-LKYEIGVSVLC 194
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 58.7 bits (143), Expect = 8e-12
Identities = 18/90 (20%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 11 PHALLDRSMQKVKQTFELSVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSM 70
L + ++ E++V++ + +L+ M G+ ++S A G
Sbjct: 99 MDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKYGFADGGIY 158
Query: 71 AASQFAVQGLSEALAQQLWKKPNVHVTLVH 100
+++FA+ GL+E+L ++L + VT +
Sbjct: 159 GSTKFALLGLAESLYRELAPL-GIRVTTLC 187
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics,
unknown function, oxidoreductase, PSI- 2; 2.40A
{Corynebacterium glutamicum}
Length = 245
Score = 58.3 bits (142), Expect = 1e-11
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 41 LTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQLWKKPNVHVTLVH 100
L P L + G + ++S AG P +T AAS+ A++GL++A ++ + V+ V
Sbjct: 117 LLPALRAASGCVIYINSGAGNGPHPGNTIYAASKHALRGLADAFRKEEANN-GIRVSTVS 175
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 57.6 bits (140), Expect = 2e-11
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 41 LTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQLWKKPNVHVTLV 99
M GH ++SVA H + S+F +GL E + K NV +T V
Sbjct: 129 FALMERQHSGHIFFITSVAATKAFRHSSIYCMSKFGQRGLVETMRLYARKC-NVRITDV 186
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 56.7 bits (137), Expect = 7e-11
Identities = 14/84 (16%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 18 SMQKVKQTFELSVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSM-AASQFA 76
+ ++ + ++++VLS + L M G + +SS + G P + + A++ A
Sbjct: 107 TPEQFAELYDINVLSTQRVNRAALPHMRRQKHGLLIWISSSSSAGGTPPYLAPYFAAKAA 166
Query: 77 VQGLSEALAQQLWKKP-NVHVTLV 99
+ ++ A++L + +++
Sbjct: 167 MDAIAVQYAREL--SRWGIETSII 188
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 56.1 bits (136), Expect = 9e-11
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 34 FWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQLWKKPN 93
+ LL F M+++ RGH + +SS+AG + AS++ + GL + A++L +
Sbjct: 143 YLLLRAFAPAMIAAKRGHIINISSLAGKNPVADGAAYTASKWGLNGLMTSAAEELRQH-Q 201
Query: 94 VHVTLV 99
V V+LV
Sbjct: 202 VRVSLV 207
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
rossman fold, structural genomics, NPPSFA; 2.40A
{Thermus thermophilus}
Length = 234
Score = 53.7 bits (130), Expect = 5e-10
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 40 FLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQLWKKPNVHVTLV 99
+ +L G G V + S+AG + AS+F + GL+ A L + NV V V
Sbjct: 120 AVPALLRRGGGTIVNVGSLAGKNPFKGGAAYNASKFGLLGLAGAAMLDLREA-NVRVVNV 178
Query: 100 H 100
Sbjct: 179 L 179
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 53.0 bits (128), Expect = 8e-10
Identities = 20/100 (20%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 1 MVIHCCGLSSPHALLDRSMQKVKQTFELSVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAG 60
V+H G L ++ ++++ E ++ S +L E + + V + S A
Sbjct: 75 TVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQP-VNVVMIMSTAA 133
Query: 61 LTGQPHHTSMAASQFAVQGLSEALAQQLWKKPNVHVTLVH 100
+ ++ A ++AV+GL E++ +L K + + V+
Sbjct: 134 QQPKAQESTYCAVKWAVKGLIESVRLELKGK-PMKIIAVY 172
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 52.5 bits (126), Expect = 2e-09
Identities = 11/95 (11%), Positives = 32/95 (33%), Gaps = 4/95 (4%)
Query: 7 GLSSPHALLDRSMQKVKQTFELSVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQ-- 64
S LD +++ ++ + + + + S H + +S L
Sbjct: 138 SAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLNPVWF 197
Query: 65 PHHTSMAASQFAVQGLSEALAQQLWKKPNVHVTLV 99
H + +++ + +A++ K + V +
Sbjct: 198 KQHCAYTIAKYGMSMYVLGMAEEF--KGEIAVNAL 230
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 51.8 bits (125), Expect = 3e-09
Identities = 13/65 (20%), Positives = 29/65 (44%)
Query: 24 QTFELSVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEA 83
+ +L S + FL + S V ++S+ +PH + +A++ V+ L +
Sbjct: 113 EELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLASQPEPHMVATSAARAGVKNLVRS 172
Query: 84 LAQQL 88
+A +
Sbjct: 173 MAFEF 177
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 51.5 bits (124), Expect = 4e-09
Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Query: 7 GLSSPHALLDR-SMQKVKQTFELSVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQP 65
G+ P ++ + K+ ++++ S L+ L P L G+ V +SS A
Sbjct: 87 GVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIAL-PELKKTNGNVVFVSSDACNMYFS 145
Query: 66 HHTSMAASQFAVQGLSEALAQQLWKKPNVHVTLV 99
+ +S+ A+ + LA + + V V
Sbjct: 146 SWGAYGSSKAALNHFAMTLANE---ERQVKAIAV 176
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 49.9 bits (120), Expect = 1e-08
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 24 QTFELSVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEA 83
EL+V L++ F P L +G V ++S+ Q + + ++ A+ +S+
Sbjct: 115 DAIELTVFGALRLIQGFT-PALEESKGAVVNVNSMVVRHSQAKYGAYKMAKSALLAMSQT 173
Query: 84 LAQQL 88
LA +L
Sbjct: 174 LATEL 178
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Length = 266
Score = 49.5 bits (119), Expect = 2e-08
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 40 FLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQLWKKPNVHVTLV 99
L PM + G + +SS+AG P H + ++FAV +SE + +++ NV V
Sbjct: 129 VLAPMKARNCGTIINISSIAGKKTFPDHAAYCGTKFAVHAISENVREEVAAS-NVRVMT- 186
Query: 100 HIYPFLLSADLKSNIR 115
I P + +L S+
Sbjct: 187 -IAPSAVKTELLSHTT 201
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 48.7 bits (117), Expect = 4e-08
Identities = 12/55 (21%), Positives = 24/55 (43%)
Query: 34 FWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
F + + M ++G G V ++S GL P H ++ A+ L++ +
Sbjct: 130 FRICRAAIPLMAAAGGGAIVNVASCWGLRPGPGHALYCLTKAALASLTQCMGMDH 184
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 48.3 bits (116), Expect = 5e-08
Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 1/100 (1%)
Query: 2 VIHCCGLSSPHALLDR-SMQKVKQTFELSVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAG 60
++H + P L++ + Q ++V + F L L + S SS G
Sbjct: 98 LLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVG 157
Query: 61 LTGQPHHTSMAASQFAVQGLSEALAQQLWKKPNVHVTLVH 100
G+ + + S+FA +GL + LA +L V ++
Sbjct: 158 RKGRANWGAYGVSKFATEGLMQTLADELEGVTAVRANSIN 197
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 47.4 bits (113), Expect = 1e-07
Identities = 20/92 (21%), Positives = 32/92 (34%), Gaps = 5/92 (5%)
Query: 10 SPHALLDRSMQKVKQTFELSVLSHFWLLEEFLTPMLSSG--RGHWVTLSSVAGLTGQPHH 67
S L + +V + L++ S L L S V +SS+ L
Sbjct: 107 SKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQPYKGW 166
Query: 68 TSMAASQFAVQGLSEALAQQLWKKPNVHVTLV 99
A + A L + LA + +P+V V
Sbjct: 167 GLYCAGKAARDMLYQVLAAE---EPSVRVLSY 195
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 46.9 bits (112), Expect = 1e-07
Identities = 14/95 (14%), Positives = 28/95 (29%), Gaps = 3/95 (3%)
Query: 7 GLSSPHALLDRSMQKVKQTFELSVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPH 66
G + +A + ++ S+ + + G + A L G P
Sbjct: 86 GWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLL--TLAGAKAALDGTPG 143
Query: 67 HTSMAASQFAVQGLSEALAQQL-WKKPNVHVTLVH 100
++ AV L ++LA + V
Sbjct: 144 MIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVL 178
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold,
short-chain dehydrogenase/reducta ALLO-threonine
dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Length = 248
Score = 47.2 bits (113), Expect = 1e-07
Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 3/78 (3%)
Query: 40 FLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQLWKKPNVHVTLV 99
L M+ GH + + S AG A++ V+ S L L V VT
Sbjct: 117 VLPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLNLRTDLHGTA-VRVTD- 174
Query: 100 HIYPFLLSADLKSNIRLR 117
I P L+ SN+R +
Sbjct: 175 -IEPGLVGGTEFSNVRFK 191
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 46.9 bits (112), Expect = 1e-07
Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 3/89 (3%)
Query: 13 ALLDRSMQKVKQTFELSVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAA 72
A ++ + SV S + L G G + A + P
Sbjct: 88 ASSKDFVKNADLMIKQSVWSSAIAAKLAT-THLKPG-GLLQLTGAAAAMGPTPSMIGYGM 145
Query: 73 SQFAVQGLSEALAQQLWKKP-NVHVTLVH 100
++ AV L+ +LA + P N V +
Sbjct: 146 AKAAVHHLTSSLAAKDSGLPDNSAVLTIM 174
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase,
lactamase inhibitor, AN biosynthesis, NADPH,
oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces
clavuligerus} PDB: 2jap_A*
Length = 247
Score = 46.8 bits (112), Expect = 1e-07
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 43 PMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQLWKKPNVHVTLVHIY 102
P L +G V +SS+AG + A++F V SE L Q++ ++ V V + I
Sbjct: 128 PHLLRSKGTVVQMSSIAGRVNVRNAAVYQATKFGVNAFSETLRQEVTER-GVRVVV--IE 184
Query: 103 PFLLSADLKSNIR 115
P +L+ +I
Sbjct: 185 PGTTDTELRGHIT 197
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 46.1 bits (110), Expect = 2e-07
Identities = 12/99 (12%), Positives = 33/99 (33%), Gaps = 4/99 (4%)
Query: 2 VIHCCGLSSPHALLDRSMQKVKQTFELSVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAGL 61
++ G ++ L + + +K T + L+ + + G + +
Sbjct: 62 IVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSF--TLTTGIMME 119
Query: 62 TGQPHHTSMAASQFAVQGLSEALAQQLWKKPNVHVTLVH 100
S A + AV +++ A ++ + + V
Sbjct: 120 DPIVQGASAAMANGAVTAFAKSAAIEM--PRGIRINTVS 156
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 46.4 bits (111), Expect = 2e-07
Identities = 15/96 (15%), Positives = 34/96 (35%), Gaps = 3/96 (3%)
Query: 7 GLSSPHALLDRSMQKVKQTFELSVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQ-- 64
LD M++ +++ F + L +L + H +TL+ L
Sbjct: 99 SAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNPAWW 158
Query: 65 PHHTSMAASQFAVQGLSEALAQQLWKKPNVHVTLVH 100
HT ++ + ++ LA + + V + +
Sbjct: 159 GAHTGYTLAKMGMSLVTLGLAAE-FGPQGVAINALW 193
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural
genomics O infectious diseases, 3-layer(ABA) sandwich,
rossmann fold; HET: NAD; 1.25A {Salmonella enterica
subsp}
Length = 294
Score = 46.0 bits (110), Expect = 3e-07
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 14 LLDRSMQKVKQTFELSVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAAS 73
+ D + ++ +QTF ++V + FW+ +E + P+L G +T SS+ PH AA+
Sbjct: 145 IKDLTSEQFQQTFAVNVFALFWITQEAI-PLLPKG-ASIITTSSIQAYQPSPHLLDYAAT 202
Query: 74 QFAVQGLSEALAQQLWKK 91
+ A+ S LA+Q+ +K
Sbjct: 203 KAAILNYSRGLAKQVAEK 220
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 46.0 bits (110), Expect = 3e-07
Identities = 12/65 (18%), Positives = 28/65 (43%)
Query: 24 QTFELSVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEA 83
+EL V++ L + M + G G + +S+ + + ++ A+ S+
Sbjct: 111 FYWELLVMAAVRLARGLVPGMRARGGGAIIHNASICAVQPLWYEPIYNVTKAALMMFSKT 170
Query: 84 LAQQL 88
LA ++
Sbjct: 171 LATEV 175
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 45.6 bits (109), Expect = 4e-07
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 44 MLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
ML G G V ++SVA L P ++ S+ AV L++++A
Sbjct: 129 MLLQGAGVIVNIASVASLVAFPGRSAYTTSKGAVLQLTKSVAVDY 173
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, infectious D center for structural genomics of
infectious diseases; HET: NAD; 2.05A {Bacillus anthracis
str} PDB: 3i3o_A*
Length = 291
Score = 45.6 bits (109), Expect = 4e-07
Identities = 14/78 (17%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 14 LLDRSMQKVKQTFELSVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAAS 73
L + +++++TF +++ S+F + + L+ + + +S+ G +A+
Sbjct: 142 LEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDV--IINTASIVAYEGNETLIDYSAT 199
Query: 74 QFAVQGLSEALAQQLWKK 91
+ A+ + +L+Q L +K
Sbjct: 200 KGAIVAFTRSLSQSLVQK 217
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 45.6 bits (109), Expect = 4e-07
Identities = 16/65 (24%), Positives = 35/65 (53%)
Query: 24 QTFELSVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEA 83
T ++ + + +E M +G GH V++SS+ + ++T++ S+ A++ L+
Sbjct: 108 WTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIRYLENYTTVGVSKAALEALTRY 167
Query: 84 LAQQL 88
LA +L
Sbjct: 168 LAVEL 172
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 45.6 bits (109), Expect = 5e-07
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 43 PMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
++S+G G V +SS T+ A ++ A++ L+ +A Q
Sbjct: 132 RLISAGGGAIVNISSATAHAAYDMSTAYACTKAAIETLTRYVATQY 177
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 45.2 bits (108), Expect = 5e-07
Identities = 23/83 (27%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 7 GLSSPHALLDRSMQKVKQTFELSVLSHFWLLEEFLTPMLSSGR-GHWVTLSSVAGLTGQP 65
G++ LL+ + + +KQ + ++V S F+ ++ G G + +S+A + G P
Sbjct: 90 GIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAIQGFP 149
Query: 66 HHTSMAASQFAVQGLSEALAQQL 88
++ + ++FAV+GL++A AQ+L
Sbjct: 150 ILSAYSTTKFAVRGLTQAAAQEL 172
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
Length = 277
Score = 45.2 bits (108), Expect = 6e-07
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 43 PMLSSGR-GHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
++ GR G + +SS AG+ QP AS+ AV GL+ A A +L
Sbjct: 146 RIIEGGRGGSIILISSAAGMKMQPFMIHYTASKHAVTGLARAFAAEL 192
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 45.2 bits (108), Expect = 6e-07
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 43 PMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
M G G V ++SV GL + + + AS+ + L+ +LA L
Sbjct: 122 EMRKVGGGAIVNVASVQGLFAEQENAAYNASKGGLVNLTRSLALDL 167
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 45.2 bits (108), Expect = 6e-07
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 44 MLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
M+ G G V LSS+AG + S+ + LS A +L
Sbjct: 149 MIERGGGAIVNLSSLAGQVAVGGTGAYGMSKAGIIQLSRITAAEL 193
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: NAD; 2.10A {Mycobacterium
abscessus}
Length = 281
Score = 45.2 bits (108), Expect = 6e-07
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 43 PMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
M+ G VT+SS+ G + S +S++ V GL++ A L
Sbjct: 144 GMIKRNYGRIVTVSSMLGHSANFAQASYVSSKWGVIGLTKCAAHDL 189
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 44.8 bits (107), Expect = 7e-07
Identities = 15/55 (27%), Positives = 25/55 (45%)
Query: 34 FWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
F L + M +G G + +SS+AG S +S+ AV L+ +A +
Sbjct: 124 FRLSQLAAPHMQKAGGGAILNISSMAGENTNVRMASYGSSKAAVNHLTRNIAFDV 178
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 44.8 bits (107), Expect = 7e-07
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 13 ALLDRSMQKVKQTFELSVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAA 72
D M ++ +EL+V S F L + M +G G +T++S+A + TS A+
Sbjct: 102 KPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYAS 161
Query: 73 SQFAVQGLSEALAQQLWKKPNVHV 96
S+ A L +A L +K N+ V
Sbjct: 162 SKAAASHLVRNMAFDLGEK-NIRV 184
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 44.9 bits (107), Expect = 8e-07
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 34 FWLLEEFLTPMLSSGR-GHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
F + L+S G V +S+A G P +AS+FAV G ++ALA+++
Sbjct: 122 FLANQIACRHFLASNTKGVIVNTASLAAKVGAPLLAHYSASKFAVFGWTQALAREM 177
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 44.8 bits (107), Expect = 8e-07
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 43 PMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
M +G G V +SS AGL G +S AS++ V+GLS+ A +L
Sbjct: 124 AMKDAGGGSIVNISSAAGLMGLALTSSYGASKWGVRGLSKLAAVEL 169
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain
oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A
{Saccharomyces cerevisiae}
Length = 287
Score = 45.0 bits (107), Expect = 9e-07
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 40 FLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQLWKKPNVHVTLV 99
L + G V L S+AG P + AS+FAV +++L ++L + V L+
Sbjct: 158 VLPIFQAKNSGDIVNLGSIAGRDAYPTGSIYCASKFAVGAFTDSLRKELINTK-IRVILI 216
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 44.8 bits (107), Expect = 9e-07
Identities = 13/55 (23%), Positives = 28/55 (50%)
Query: 34 FWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
F L ++ + G VT++S A T + ++ AS+ A++ L+ ++ +L
Sbjct: 110 FNLFQQTMNQFRRQRGGAIVTVASDAAHTPRIGMSAYGASKAALKSLALSVGLEL 164
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 44.9 bits (107), Expect = 9e-07
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 43 PMLSSGR-GHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
M+ +G G V +SS AGL P + +AS+ + L+ LA +L
Sbjct: 150 AMIEAGNGGSIVVVSSSAGLKATPGNGHYSASKHGLTALTNTLAIEL 196
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 44.4 bits (106), Expect = 1e-06
Identities = 14/65 (21%), Positives = 29/65 (44%)
Query: 24 QTFELSVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEA 83
Q FE + LL+ + P+ ++G + ++S G ++ ++ A L E+
Sbjct: 101 QMFEALSIFPILLLQSAIAPLRAAGGASVIFITSSVGKKPLAYNPLYGPARAATVALVES 160
Query: 84 LAQQL 88
A+ L
Sbjct: 161 AAKTL 165
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 44.8 bits (107), Expect = 1e-06
Identities = 15/65 (23%), Positives = 30/65 (46%)
Query: 24 QTFELSVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEA 83
+ ++V + + + + M G G + +SSV P+ S+ A+ GL++
Sbjct: 118 KILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHPFPNLGPYNVSKTALLGLTKN 177
Query: 84 LAQQL 88
LA +L
Sbjct: 178 LAVEL 182
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 44.5 bits (106), Expect = 1e-06
Identities = 16/65 (24%), Positives = 31/65 (47%)
Query: 24 QTFELSVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEA 83
+T +L+V ++L+ M+ G G +V +SS+A + ++ AV L +
Sbjct: 118 RTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAASNTHRWFGAYGVTKSAVDHLMQL 177
Query: 84 LAQQL 88
A +L
Sbjct: 178 AADEL 182
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 44.5 bits (106), Expect = 1e-06
Identities = 11/70 (15%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 34 FWLLEEFLTPML--SSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQLWKK 91
F +E M G + S++ + +P+ A++ A+ GL+++ + +
Sbjct: 139 FLCTQEAFRVMKAQEPRGGRIINNGSISATSPRPYSAPYTATKHAITGLTKSTSLD-GRV 197
Query: 92 PNVHVTLVHI 101
++ + I
Sbjct: 198 HDIACGQIDI 207
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 44.5 bits (106), Expect = 1e-06
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 43 PMLSSGRGHW-VTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQLWKKPNVHVTLVH 100
M++ GRG + SSV GL PH A++ V GL A +L + + V VH
Sbjct: 150 HMIAGGRGGSIILTSSVGGLKAYPHTGHYVAAKHGVVGLMRAFGVELGQH-MIRVNSVH 207
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 44.4 bits (106), Expect = 1e-06
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 34 FWLLEEFLTPMLSSGR-GHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
L M+++G G +T++S A L P H + S+ + ++ LA++L
Sbjct: 134 ALLASAVGKAMVAAGEGGAIITVASAAALAPLPDHYAYCTSKAGLVMATKVLAREL 189
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 44.1 bits (105), Expect = 1e-06
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 44 MLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQLWKKPNVHVTLVH 100
M + G + + S+ L+ P A++FAV+ +S+ L Q+ N+ VT V+
Sbjct: 127 MEAQRSGQIINIGSIGALSVVPTAAVYCATKFAVRAISDGLRQE---STNIRVTCVN 180
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 44.0 bits (105), Expect = 2e-06
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 34 FWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQLWKKPN 93
F L + L +L S G V SS G G+ + + AAS+FA +G+ + LA + +
Sbjct: 129 FMLTQALLPLLLKSDAGSLVFTSSSVGRQGRANWGAYAASKFATEGMMQVLADEY--QQR 186
Query: 94 VHV 96
+ V
Sbjct: 187 LRV 189
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 44.0 bits (105), Expect = 2e-06
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 44 MLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
M +GRG + +SS+ GL G A++FAV+GL+++ A +L
Sbjct: 127 MKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALEL 171
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 44.1 bits (105), Expect = 2e-06
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 44 MLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQLWKK 91
M+ S V +SSV + ++ S+ AV GL++++A
Sbjct: 120 MIRSRDPSIVNISSVQASIITKNASAYVTSKHAVIGLTKSIALDYAPL 167
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 44.1 bits (105), Expect = 2e-06
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 44 MLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
M +G G + +S + T+ AS+ A+ L+ A+A
Sbjct: 147 MRRNGGGSIINTTSYTATSAIADRTAYVASKGAISSLTRAMAMDH 191
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
1.60A {Thermococcus sibiricus}
Length = 235
Score = 44.1 bits (105), Expect = 2e-06
Identities = 20/99 (20%), Positives = 42/99 (42%), Gaps = 4/99 (4%)
Query: 2 VIHCCGLSSPHALLDRSMQKVKQTFELSVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAGL 61
V+ GL L + S ++ + E+++L + L+ FL + +G VT S V+
Sbjct: 84 VVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTGGLALVTTSDVSAR 143
Query: 62 TGQPHHTSMAASQFAVQGLSEALAQQLWKKPNVHVTLVH 100
P+ ++++A + L + P+V +
Sbjct: 144 L-IPYGGGYVSTKWAARALVRTFQIE---NPDVRFFELR 178
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 43.8 bits (104), Expect = 2e-06
Identities = 9/88 (10%), Positives = 32/88 (36%), Gaps = 2/88 (2%)
Query: 14 LLDRSMQKVKQTFELSVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQ-PHHTSMAA 72
+ + +++ + V + + + + M H +TLS L + T
Sbjct: 109 IEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEPKWLRPTPYMM 168
Query: 73 SQFAVQGLSEALAQQLWKKPNVHVTLVH 100
+++ + + +A++ + + +
Sbjct: 169 AKYGMTLCALGIAEE-LRDAGIASNTLW 195
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 43.7 bits (104), Expect = 2e-06
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 34 FWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
W M G G V SS A ++ ++ + GL++ L+++L
Sbjct: 125 LWCTRAVYKKMTKRGGGAIVNQSSTAAWLYSNYY---GLAKVGINGLTQQLSREL 176
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 43.8 bits (104), Expect = 2e-06
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 43 PMLSSGR-GHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
M+ G+ G + +SS GL G P + AAS+ VQGL +LA ++
Sbjct: 180 SMIERGQGGSVIFVSSTVGLRGAPGQSHYAASKHGVQGLMLSLANEV 226
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 43.7 bits (104), Expect = 2e-06
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 44 MLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQLWKK 91
M G G V +SV G+ G + + AA++ V GL+ A + +
Sbjct: 139 MREQGSGMVVNTASVGGIRGIGNQSGYAAAKHGVVGLTRNSAVEYGRY 186
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 43.7 bits (104), Expect = 2e-06
Identities = 15/65 (23%), Positives = 24/65 (36%)
Query: 24 QTFELSVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEA 83
+++ L S W+ M+ G G V + SV L + V G+
Sbjct: 111 ESYRLLARSAVWVGRRAAEQMVEKGWGRMVYIGSVTLLRPWQDLALSNIMRLPVIGVVRT 170
Query: 84 LAQQL 88
LA +L
Sbjct: 171 LALEL 175
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A
{Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 43.3 bits (103), Expect = 3e-06
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 34 FWLLEEFLTPMLSSGR-GHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
W ++ + G G + S AG G P ++S+FAV+GL++ A+ L
Sbjct: 115 IWGIQAAVEAFKKEGHGGKIINACSQAGHVGNPELAVYSSSKFAVRGLTQTAARDL 170
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 43.4 bits (103), Expect = 3e-06
Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 4/62 (6%)
Query: 41 LTPMLSSGRGHW---VTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQLWKKPNVHVT 97
L G + SV G +AS+ AV + +LA+ V
Sbjct: 119 LDFWDKRKGGPGGIIANICSVTGFNAIHQVPVYSASKAAVVSFTNSLAKLAPIT-GVTAY 177
Query: 98 LV 99
+
Sbjct: 178 SI 179
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 43.3 bits (103), Expect = 3e-06
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 44 MLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQLWKK 91
ML+ G G + ++SV + + S+ A+ GL+ ++A K
Sbjct: 127 MLAIGHGSIINIASVQSYAATKNAAAYVTSKHALLGLTRSVAIDYAPK 174
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 43.3 bits (103), Expect = 3e-06
Identities = 10/55 (18%), Positives = 24/55 (43%)
Query: 34 FWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
F L+ + M GH + ++S ++ +++ L+ AL+++L
Sbjct: 109 FALVNAVASQMKKRKSGHIIFITSATPFGPWKELSTYTSARAGACTLANALSKEL 163
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 43.3 bits (103), Expect = 3e-06
Identities = 8/55 (14%), Positives = 21/55 (38%)
Query: 34 FWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
+ + + +S V +S G H + A++ ++ L+ + A +
Sbjct: 134 YLINLHCEPLLTASEVADIVHISDDVTRKGSSKHIAYCATKAGLESLTLSFAARF 188
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 42.9 bits (102), Expect = 4e-06
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 43 PMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
P L +G+ + +SS+ G GQ A++ AV +++ALA
Sbjct: 127 PYLRKSQGNVINISSLVGAIGQAQAVPYVATKGAVTAMTKALALDE 172
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 42.9 bits (102), Expect = 4e-06
Identities = 10/63 (15%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 30 VLSHFWLLEEFLTPMLSSGRGHW----VTLSSVAGLTGQPHHTSMAASQFAVQGLSEALA 85
V + + + + +G + ++S +P+ A++ V +++ALA
Sbjct: 116 VRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGRPRPNLAWYNATKGWVVSVTKALA 175
Query: 86 QQL 88
+L
Sbjct: 176 IEL 178
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.95A {Mycobacterium avium}
Length = 299
Score = 43.0 bits (102), Expect = 4e-06
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 43 PMLSSGR-GHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
+++ R G V SS+ GL G + + AS+ + GL +A +L
Sbjct: 163 HIMAGKRGGSIVFTSSIGGLRGAENIGNYIASKHGLHGLMRTMALEL 209
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 42.9 bits (102), Expect = 4e-06
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 24 QTFELSVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEA 83
+ FE++++S L +L M+ G + ++S A + +A++ LS +
Sbjct: 111 KLFEVNIMSGVRLTRSYLKKMIERKEGRVIFIASEAAIMPSQEMAHYSATKTMQLSLSRS 170
Query: 84 LAQQLWKKPNVHV 96
LA+ NV V
Sbjct: 171 LAELT-TGTNVTV 182
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 42.5 bits (101), Expect = 5e-06
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 34 FWLLEEFLTPMLSSGR-GHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
+ L+ M++ GR G + ++S AG G+ A++ AV L+++ L
Sbjct: 118 LFTLQAAARQMIAQGRGGKIINMASQAGRRGEALVAIYCATKAAVISLTQSAGLDL 173
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 42.5 bits (101), Expect = 5e-06
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 43 PMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQLWKK 91
ML G+G V +S+AG+ G ++ + GL+ ++A +
Sbjct: 130 IMLKQGKGVIVNTASIAGIRGGFAGAPYTVAKHGLIGLTRSIAAHYGDQ 178
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 42.2 bits (100), Expect = 7e-06
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 34 FWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQ--FAVQGLSEALAQQL 88
F + + ML G GH V++++ S AS + ++ +LA +
Sbjct: 132 FHITQRAAAEMLKQGSGHIVSITTSLVDQPMVGMPSALASLTKGGLNAVTRSLAMEF 188
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 42.2 bits (100), Expect = 8e-06
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 43 PMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQLWKKPNVHV 96
M++ G V +S+AG+ G P+ + S+ A+ L+E A L N+ V
Sbjct: 130 QMITQNYGRIVNTASMAGVKGPPNMAAYGTSKGAIIALTETAALDLAPY-NIRV 182
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 41.9 bits (99), Expect = 1e-05
Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 3/95 (3%)
Query: 7 GLSSPHALLDRSMQKVKQTFELSVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPH 66
G S +A D ++ VK ++++ S F +L+ G G +V + A L
Sbjct: 97 GWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGA-KLLNQG-GLFVLTGASAALNRTSG 154
Query: 67 HTSMAASQFAVQGLSEALAQQL-WKKPNVHVTLVH 100
+ A++ A + + LA + +
Sbjct: 155 MIAYGATKAATHHIIKDLASENGGLPAGSTSLGIL 189
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 41.8 bits (99), Expect = 1e-05
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 43 PMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQLWKKPNVHV 96
P L S RG V S AG A++ AV GL +A +L P+V V
Sbjct: 128 PALVSSRGSVVFTISNAGFYPNGGGPLYTATKHAVVGLVRQMAFEL--APHVRV 179
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
genomics, structural genomics consortium,
oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
c.2.1.2
Length = 279
Score = 41.9 bits (99), Expect = 1e-05
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 7 GLSSPHALLDRSMQKVKQTFELSVLSHFWLLEEFLTPMLSSG--RGHWVTLSSVAGLTGQ 64
GL+ P LL S K F ++VL+ E M GH + ++S++G
Sbjct: 120 GLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVL 179
Query: 65 PHHTSM--AASQFAVQGLSEALAQQL-WKKPNVHVTLV 99
P + +A+++AV L+E L Q+L + ++ T +
Sbjct: 180 PLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCI 217
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 41.7 bits (99), Expect = 1e-05
Identities = 18/69 (26%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 24 QTFELSVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAG-LTGQPHHTSMAASQFAVQGLSE 82
+ L+V S + +++ FL ML+ G+ + +SSVA + G + + ++ AV GL++
Sbjct: 100 FSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKGVVNRCVYSTTKAAVIGLTK 159
Query: 83 ALAQQLWKK 91
++A ++
Sbjct: 160 SVAADFIQQ 168
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 41.4 bits (98), Expect = 1e-05
Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 4/84 (4%)
Query: 7 GLSSPHALLDR-SMQKVKQTFELSVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQP 65
G + Q ++++ S F + L M G VT SS AG G
Sbjct: 95 GGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGA--IVTFSSQAGRDGGG 152
Query: 66 HHTSM-AASQFAVQGLSEALAQQL 88
A S+ AV + LA+++
Sbjct: 153 PGALAYATSKGAVMTFTRGLAKEV 176
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 41.3 bits (98), Expect = 1e-05
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 44 MLSSGRGHW-VTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQLWKKP-NVHVTLVH 100
M + G G + +SS+ G G P + AS+ AV+ +S++ A K +V V VH
Sbjct: 128 MKNKGLGASIINMSSIEGFVGDPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVH 186
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 41.0 bits (97), Expect = 2e-05
Identities = 10/87 (11%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 2 VIHCCGLSSPHALLDRSMQKVKQTFELSVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAGL 61
I+ G +++ S + ++ ++ +++ M +G +T+++
Sbjct: 95 AINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGH--IITIATSLLA 152
Query: 62 TGQPHHTSMAASQFAVQGLSEALAQQL 88
+++ A ++ V+ + A +++L
Sbjct: 153 AYTGFYSTYAGNKAPVEHYTRAASKEL 179
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 41.0 bits (97), Expect = 2e-05
Identities = 12/65 (18%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 24 QTFELSVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEA 83
+ +++ F L E + GR + +S+ P + AA++ V+ ++
Sbjct: 131 RVIAVNLKGTFNTLREAAQRLRVGGR--IINMSTSQVGLLHPSYGIYAAAKAGVEAMTHV 188
Query: 84 LAQQL 88
L+++L
Sbjct: 189 LSKEL 193
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 41.0 bits (97), Expect = 2e-05
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 43 PMLSSGR-GHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
G V +SV G Q + AA++ V L+ A +
Sbjct: 146 YFRGVDHGGVIVNNASVLGWRAQHSQSHYAAAKAGVMALTRCSAIEA 192
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 41.0 bits (97), Expect = 2e-05
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 34 FWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMA--ASQFAVQGLSEALAQQLWKK 91
FW F M++ G G V L S++G + + AS+ AV L+ ALA + W
Sbjct: 121 FWASRAFGRAMVARGAGAIVNLGSMSGTIVNRPQFASSYMASKGAVHQLTRALAAE-WAG 179
Query: 92 PNVHV 96
V V
Sbjct: 180 RGVRV 184
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 41.0 bits (97), Expect = 2e-05
Identities = 18/65 (27%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 32 SHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQLWKK 91
+ + L + + +S G+ + LSS+AG + P + +AS+ A+ ++++LA + W K
Sbjct: 133 AAYHLSQIAYPLLKASQNGNVIFLSSIAGFSALPSVSLYSASKGAINQMTKSLACE-WAK 191
Query: 92 PNVHV 96
N+ V
Sbjct: 192 DNIRV 196
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 40.9 bits (97), Expect = 2e-05
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 7 GLSSPHALLDRSMQKVKQTFELSVLSHFWLLEEFLTPMLSSG-RGHWVTLSSVAGLTGQP 65
GL +P + + S+ + + ++ F E + + + +G + +SSV P
Sbjct: 94 GLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWP 153
Query: 66 HHTSMAASQFAVQGLSEALAQQL 88
AAS+ ++ ++E LA +
Sbjct: 154 LFVHYAASKGGMKLMTETLALEY 176
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 40.9 bits (97), Expect = 2e-05
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 43 PMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
M +G G + L+S +T +++ A G + ALA L
Sbjct: 127 GMKRNGWGRIINLTSTTYWLKIEAYTHYISTKAANIGFTRALASDL 172
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 40.7 bits (96), Expect = 2e-05
Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 5/70 (7%)
Query: 24 QTFELSVLSHFWLLEEFLTPMLSSG-----RGHWVTLSSVAGLTGQPHHTSMAASQFAVQ 78
+ F + ++ +L+ F G V L P ++ A+
Sbjct: 131 ELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAMTDLPLPGFCVYTMAKHALG 190
Query: 79 GLSEALAQQL 88
GL+ A A +L
Sbjct: 191 GLTRAAALEL 200
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 40.7 bits (96), Expect = 3e-05
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 44 MLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
M +G G V ++S G G + AS+ V G ++++ +L
Sbjct: 149 MREAGWGRIVNIASTGGKQGVMYAAPYTASKHGVVGFTKSVGFEL 193
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 40.6 bits (96), Expect = 3e-05
Identities = 10/63 (15%), Positives = 30/63 (47%)
Query: 26 FELSVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALA 85
+ L+ ++ +L M G G V ++S + ++ + + +++ A+ G + L+
Sbjct: 109 IDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISPIENLYTSNSARMALTGFLKTLS 168
Query: 86 QQL 88
++
Sbjct: 169 FEV 171
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 40.6 bits (96), Expect = 3e-05
Identities = 14/57 (24%), Positives = 30/57 (52%)
Query: 32 SHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
S + L + + +SG G+ + +SS+AG+ + +A++ A+ L+ LA +
Sbjct: 126 SAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSASVGSIYSATKGALNQLARNLACEW 182
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 40.3 bits (95), Expect = 4e-05
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 44 MLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
ML G G V ++S G G H +AS+ V G ++AL +L
Sbjct: 147 MLERGTGRIVNIASTGGKQGVVHAAPYSASKHGVVGFTKALGLEL 191
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 40.2 bits (95), Expect = 4e-05
Identities = 10/56 (17%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 34 FWLLEEFLTPMLSSGR-GHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
+ + +++ G G V +SS +H+ +++ A+ L++ +A +L
Sbjct: 112 IQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALEL 167
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 39.8 bits (94), Expect = 5e-05
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 32 SHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQLWKK 91
+ + L + +S RG+ V +SSV+G P+ A++ A+ L+ LA + W K
Sbjct: 121 AAYHLSVLAHPFLKASERGNVVFISSVSGALAVPYEAVYGATKGAMDQLTRCLAFE-WAK 179
Query: 92 PNVHV 96
N+ V
Sbjct: 180 DNIRV 184
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 39.5 bits (93), Expect = 5e-05
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 40 FLTPMLSSGRG-HWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQLWKKPNVHVTL 98
L +++ G G V L SVAG P ++ V+ S L L V VT
Sbjct: 140 LLPRLIAHGAGASIVNLGSVAGKWPYPGSHVYGGTKAFVEQFSLNLRCDLQGTG-VRVTN 198
Query: 99 V 99
+
Sbjct: 199 L 199
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 39.4 bits (93), Expect = 6e-05
Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 34 FWLLEEFLTPMLSSGR-GHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQLWKKP 92
F+ + + G G+ + + + P AA++ V +++ LA + +K
Sbjct: 119 FYCSQAIGKYWIEKGIKGNIINMVATYAWDAGPGVIHSAAAKAGVLAMTKTLAVEWGRKY 178
Query: 93 NVHV 96
+ V
Sbjct: 179 GIRV 182
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 39.5 bits (93), Expect = 6e-05
Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 44 MLSSGRGHWVTLSSVAGLTGQPHHTSM-AASQFAVQGLSEALAQQL 88
M+ + +G V +S++ T + + A++ AV GL+ +L +L
Sbjct: 140 MIPAKKGSIVFTASISSFTAGEGVSHVYTATKHAVLGLTTSLCTEL 185
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 39.5 bits (93), Expect = 6e-05
Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Query: 7 GLSSPHALLDR-SMQKVKQTFELSVLSHFWLLEEFLTPMLSSGRGHW---VTLSSVAGLT 62
G+ +D S++++++ ++V E + M G V +SS+A +
Sbjct: 113 GIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAIL 172
Query: 63 GQPHHTSM-AASQFAVQGLSEALAQQL 88
G AAS+ A+ + LA+++
Sbjct: 173 GSATQYVDYAASKAAIDTFTIGLAREV 199
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 39.4 bits (93), Expect = 6e-05
Identities = 17/83 (20%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 7 GLSSPHALLDRSMQKVKQTFELSVLSHFWLLEEFLTPMLSSGR-GHWVTLSSVAGLTGQP 65
L L+ + + ++F +++ S F + + M++ G G V +SS+ P
Sbjct: 85 ALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFP 144
Query: 66 HHTSMAASQFAVQGLSEALAQQL 88
+ + ++++ A+ L++A+A +L
Sbjct: 145 NLITYSSTKGAMTMLTKAMAMEL 167
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, protein structure initiati nysgrc; 2.30A
{Sinorhizobium meliloti}
Length = 271
Score = 39.5 bits (93), Expect = 6e-05
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 24 QTFELSVLSHFWLLEEFLTPMLSSGRGHWVTLSS-VAGLTGQPHHTSMAASQFAVQGLSE 82
+ ++ + F + + GR +T+ S +A L P + +AS+ A+ GL++
Sbjct: 135 EVMAVNFRAPFVAIRSASRHLGDGGR--IITIGSNLAELVPWPGISLYSASKAALAGLTK 192
Query: 83 ALAQQL 88
LA+ L
Sbjct: 193 GLARDL 198
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann
fold; HET: NAI; 1.80A {Pseudomonas SP}
Length = 255
Score = 39.5 bits (93), Expect = 7e-05
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 28 LSVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQ 87
+ ++ L + + G +A GQ H + A S++AV L+
Sbjct: 112 VGSIAATQPGAAELPMVEAMLAGDEARAIELAEQQGQT-HLAYAGSKYAVTCLARRNVVD 170
Query: 88 L 88
Sbjct: 171 W 171
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 39.5 bits (93), Expect = 7e-05
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 7 GLSSPHALLDRSMQKVKQTFELSVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPH 66
G S L + + ++ TF+ +V + +++ L P+L+ G V S AG TG P
Sbjct: 112 GGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKAL-PLLARG-SSVVLTGSTAGSTGTPA 169
Query: 67 HTSMAASQFAVQGLSEALAQQL 88
+ AAS+ A++ + L
Sbjct: 170 FSVYAASKAALRSFARNWILDL 191
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 39.4 bits (93), Expect = 7e-05
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 43 PMLSSGR-GHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
M ++G+ G ++++S G P+ + A++ V G + ALA +L
Sbjct: 125 QMRAAGKAGRVISIASNTFFAGTPNMAAYVAAKGGVIGFTRALATEL 171
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 39.2 bits (92), Expect = 8e-05
Identities = 9/46 (19%), Positives = 17/46 (36%)
Query: 43 PMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
P +S V L + + A+ GL+++ A +L
Sbjct: 167 PNCTSSNLSIVNLCDAMVDQPCMAFSLYNMGKHALVGLTQSAALEL 212
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
genomics, putative 3-oxoacyl-(acyl carrier protei
reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus
anthracis str}
Length = 255
Score = 39.1 bits (92), Expect = 9e-05
Identities = 12/65 (18%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 24 QTFELSVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEA 83
+ ++ + F+++++ L+ + + R + +SS A P + + ++ A+ ++
Sbjct: 117 RMVSVNAKAPFFIIQQALSRLRDNSR--IINISSAATRISLPDFIAYSMTKGAINTMTFT 174
Query: 84 LAQQL 88
LA+QL
Sbjct: 175 LAKQL 179
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 39.0 bits (92), Expect = 9e-05
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 34 FWLLEEFLTPMLSSGRGHWVTLSSVAGLTG--QPHHTSMAASQFAVQGLSEALAQQLWKK 91
F + ML +G V + S++GL + AS+ V +LA + W
Sbjct: 127 FRSCQAVGRIMLEQKQGVIVAIGSMSGLIVNRPQQQAAYNASKAGVHQYIRSLAAE-WAP 185
Query: 92 PNVHV 96
+
Sbjct: 186 HGIRA 190
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 38.7 bits (91), Expect = 1e-04
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 34 FWLLEEFLTPMLSSGRGHW---VTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
+ + L ML+S + ++SV+ + P S+ + S+ LA +L
Sbjct: 145 VFFTQAVLKAMLASDARASRSIINITSVSAVMTSPERLDYCMSKAGLAAFSQGLALRL 202
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A
{Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 38.7 bits (91), Expect = 1e-04
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 24 QTFELSVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAG-LTGQPHHTSMAASQFAVQGLSE 82
+ F L+ F++ ++ L GR + SS+A +TG P+H A S+ AV+G
Sbjct: 125 KVFNLNTRGQFFVAQQGLKHCRRGGRI--ILTSSIAAVMTGIPNHALYAGSKAAVEGFCR 182
Query: 83 ALAQQL 88
A A
Sbjct: 183 AFAVDC 188
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 38.8 bits (91), Expect = 1e-04
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 34 FWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQLWKKPN 93
F + G V +++ G GQ +++ AV ++ LA + W N
Sbjct: 141 FNVSRVLYEKFFRDHGGVIVNITATLGNRGQALQVHAGSAKAAVDAMTRHLAVE-WGPQN 199
Query: 94 VHV 96
+ V
Sbjct: 200 IRV 202
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 38.7 bits (91), Expect = 1e-04
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 24 QTFELSVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEA 83
+ F ++ F+ ++ P++ G G V SSVA G P + +AS+ A+ +
Sbjct: 108 RQFAVNTKGAFFTVQRLT-PLIREG-GSIVFTSSVADEGGHPGMSVYSASKAALVSFASV 165
Query: 84 LAQQL 88
LA +L
Sbjct: 166 LAAEL 170
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 38.6 bits (90), Expect = 1e-04
Identities = 10/79 (12%), Positives = 30/79 (37%), Gaps = 6/79 (7%)
Query: 16 DRSMQKVKQTFELSVLSHFWLLEEFLTPMLSSGRGHW------VTLSSVAGLTGQPHHTS 69
+ F + ++ ++L++ F + + H + + +T
Sbjct: 174 EAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQPLLGYTI 233
Query: 70 MAASQFAVQGLSEALAQQL 88
++ A++GL+ + A +L
Sbjct: 234 YTMAKGALEGLTRSAALEL 252
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 38.4 bits (90), Expect = 1e-04
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 34 FWLLEEFLTPMLSSGR--GHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
F + M + G + S++ T +P+ A++ A+ GL+++ A
Sbjct: 148 FLCTQHAFRMMKAQTPRGGRIINNGSISAQTPRPNSAPYTATKHAITGLTKSTALDG 204
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
dehydrogenase, methotrexate resistance, oxidoreductase;
HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Length = 291
Score = 38.5 bits (90), Expect = 1e-04
Identities = 10/79 (12%), Positives = 30/79 (37%), Gaps = 6/79 (7%)
Query: 16 DRSMQKVKQTFELSVLSHFWLLEEFLTPMLSSGRGHW------VTLSSVAGLTGQPHHTS 69
+ F + ++ ++L++ F + + H + + +T
Sbjct: 137 EAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQPLLGYTI 196
Query: 70 MAASQFAVQGLSEALAQQL 88
++ A++GL+ + A +L
Sbjct: 197 YTMAKGALEGLTRSAALEL 215
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 38.3 bits (90), Expect = 2e-04
Identities = 11/54 (20%), Positives = 23/54 (42%)
Query: 35 WLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
+ L L +G + ++S +P + A+++ + L+ ALA L
Sbjct: 111 YELSRLCRDELIKNKGRIINIASTRAFQSEPDSEAYASAKGGIVALTHALAMSL 164
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU
SDR, fungi, oxidoreductase; HET: GOL; 1.48A
{Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A*
3itd_A
Length = 270
Score = 38.3 bits (90), Expect = 2e-04
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 24 QTFELSVLSHFWLLEEFLTPMLSSGRGHWVTLSS-VAGLTGQPHHTSMAASQFAVQGLSE 82
+ F L+ F++ E + GR V SS + P H+ + S+ AV
Sbjct: 122 RVFSLNTRGQFFVAREAYRHLTEGGR--IVLTSSNTSKDFSVPKHSLYSGSKGAVDSFVR 179
Query: 83 ALAQQL 88
++
Sbjct: 180 IFSKDC 185
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 38.3 bits (90), Expect = 2e-04
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 43 PMLSSGR-GHWVTLSSVAGLTG----QPHHTSMAASQFAVQGLSEALAQQL 88
++ G G V +SS AGL G P A++ V GL A L
Sbjct: 143 TLVKQGTGGSIVLISSSAGLAGVGSADPGSVGYVAAKHGVVGLMRVYANLL 193
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 38.3 bits (90), Expect = 2e-04
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 32 SHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
S F + ++ + M+ G G + +SSV G GQ T+ + ++ + G + +LAQ++
Sbjct: 125 SLFNVTKQVIDGMVERGWGRIINISSVNGQKGQFGQTNYSTAKAGIHGFTMSLAQEV 181
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 38.3 bits (90), Expect = 2e-04
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 44 MLSSGRGHWVTLSSVAG-LTGQPHHTSMAASQFAVQGLSEALAQQL 88
+ + G G SS G G AAS+ + GL +ALA +L
Sbjct: 132 IAALGGGSLTFTSSFVGHTAGFAGVAPYAASKAGLIGLVQALAVEL 177
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 37.9 bits (89), Expect = 2e-04
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 34 FWLLEEFLTPMLSSGRGHWVTLSSVAG-LTGQPHHTSMAASQFAVQGLSEALAQQL 88
F+ ++ L +++SG G V SS+ G +TG P + A++ A G A +L
Sbjct: 124 FYAVQACLDALIASGSGRVVLTSSITGPITGYPGWSHYGATKAAQLGFMRTAAIEL 179
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 38.0 bits (89), Expect = 2e-04
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 41 LTPMLSSGRGHW---VTLSSVAGLTGQPHHTSMAASQFAVQGL--SEALAQQL 88
L M G + +SS+AGL AS+ + G S ALA L
Sbjct: 121 LDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAALAANL 173
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 38.0 bits (89), Expect = 2e-04
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 42 TPMLSSGRGHWVTLSS-VAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
P L + +G V +SS VAG QP A ++ A+ + + A L
Sbjct: 133 KPHLVASKGEIVNVSSIVAGPQAQPDFLYYAIAKAALDQYTRSTAIDL 180
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 37.5 bits (88), Expect = 3e-04
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 44 MLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
M +G G + ++SV+ + +AS+ AV L+ A A
Sbjct: 126 MKETG-GSIINMASVSSWLPIEQYAGYSASKAAVSALTRAAALSC 169
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 37.6 bits (88), Expect = 3e-04
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 43 PMLSSGRGHWVTLSSVAGLT--GQPHHTSMAASQFAVQGLSEALAQQLWKK 91
+ G G V +SS+ G P T+ A++ A + + LA +L K
Sbjct: 151 YLKQRGGGAIVVVSSINGTRTFTTPGATAYTATKAAQVAIVQQLALELGKH 201
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 37.6 bits (88), Expect = 3e-04
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 42 TPMLSSGRGHWVTLSSVA-GLTGQPHHTSMAASQFAVQGLSEALAQQL 88
P LSS +G V +SS+A GL P + ++ A+ + A L
Sbjct: 133 VPHLSSTKGEIVNISSIASGLHATPDFPYYSIAKAAIDQYTRNTAIDL 180
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site
inhibitor complex, dinucleotide binding fold,
oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea}
SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Length = 283
Score = 37.6 bits (88), Expect = 3e-04
Identities = 12/66 (18%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 24 QTFELSVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAGL-TGQPHHTSMAASQFAVQGLSE 82
+ F ++ F++ E + GR + + S+ G P H + S+ A++ +
Sbjct: 133 RVFTINTRGQFFVAREAYKHLEIGGR--LILMGSITGQAKAVPKHAVYSGSKGAIETFAR 190
Query: 83 ALAQQL 88
+A +
Sbjct: 191 CMAIDM 196
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 37.2 bits (87), Expect = 4e-04
Identities = 13/52 (25%), Positives = 23/52 (44%)
Query: 34 FWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALA 85
F L M + G + ++SV GL G + A++ V GL++ +
Sbjct: 115 FHGTRLALPGMRARNWGRIINIASVHGLVGSTGKAAYVAAKHGVVGLTKVVG 166
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the
center for structural genomics of I diseases, csgid,
niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 37.1 bits (87), Expect = 4e-04
Identities = 14/82 (17%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Query: 7 GLSSPHALLDRSMQKVKQTFELSVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPH 66
G+ ++ D ++ +K+ +L+V S + ++ + V S +P+
Sbjct: 79 GILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASI--VFNGSDQCFIAKPN 136
Query: 67 HTSMAASQFAVQGLSEALAQQL 88
+ S+ A+ ++++LA L
Sbjct: 137 SFAYTLSKGAIAQMTKSLALDL 158
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty
acid, structural genomi structural genomics/proteomics
initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus}
SCOP: c.2.1.2
Length = 242
Score = 37.2 bits (87), Expect = 4e-04
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 10/97 (10%)
Query: 2 VIHCCGLSSPHALLDR----SMQKVKQTFELSVLSHFWLLEEFLTPML------SSGRGH 51
V+ G+ +L + ++ ++ E+++L F +L M RG
Sbjct: 70 VVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGV 129
Query: 52 WVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
V +SVA GQ + AAS+ V L+ A++L
Sbjct: 130 IVNTASVAAFEGQIGQAAYAASKGGVVALTLPAAREL 166
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 37.2 bits (87), Expect = 4e-04
Identities = 13/57 (22%), Positives = 28/57 (49%)
Query: 32 SHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
+ F + ++F+ M+ G V + SV G G + A+++ + G ++ LA +
Sbjct: 137 AMFNVTKQFIAGMVERRFGRIVNIGSVNGSRGAFGQANYASAKAGIHGFTKTLALET 193
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 37.3 bits (87), Expect = 5e-04
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 32 SHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
+ L E + G + LSS+AG+ G T+ A ++ + GL+EALA L
Sbjct: 322 APQRLTEGLVGNGTIGEGGRVIGLSSMAGIAGNRGQTNYATTKAGMIGLAEALAPVL 378
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 36.8 bits (86), Expect = 5e-04
Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 2/83 (2%)
Query: 14 LLDRSMQKVKQTFELSVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAAS 73
+ + + H++ M+ +G+G V +SS L +
Sbjct: 106 FWETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSL-QYMFNVPYGVG 164
Query: 74 QFAVQGLSEALAQQLWKKPNVHV 96
+ A L+ A +L ++ V
Sbjct: 165 KAACDKLAADCAHEL-RRHGVSC 186
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 36.9 bits (86), Expect = 5e-04
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 34 FWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALA 85
F + + PM G G + ++S GL P ++ A++ + GL++ +A
Sbjct: 140 FHTIRGAIPPMKKKGWGRIINIASAHGLVASPFKSAYVAAKHGIMGLTKTVA 191
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 7e-04
Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 29/107 (27%)
Query: 28 LSVLSHFWL----LEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEA 83
++VL F++ E + L + S+ G P + M ++ L++
Sbjct: 300 ITVL--FFIGVRCYEAYPNTSLPPS----ILEDSLENNEGVP--SPM----LSISNLTQE 347
Query: 84 LAQQLWKKPNVHVTL---VHIY----P--FLLS---ADLKS-NIRLR 117
Q K N H+ V I ++S L N+ LR
Sbjct: 348 QVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLR 394
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 36.6 bits (85), Expect = 8e-04
Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 2/85 (2%)
Query: 7 GLSSPHALLDRSMQKVKQTFELSVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPH 66
G++ A + + T + + + E L + GR V +SS+ +
Sbjct: 91 GIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGR--VVNVSSIMSVRALKS 148
Query: 67 HTSMAASQFAVQGLSEALAQQLWKK 91
+ +F + ++E L K
Sbjct: 149 CSPELQQKFRSETITEEELVGLMNK 173
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 36.5 bits (85), Expect = 8e-04
Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 11/99 (11%)
Query: 1 MVIHCCGLSSPHALLDR-----SMQKVKQTFELSVLSHFWLLEEFLTPML------SSGR 49
V+ G ++ R M +T +L + + + + + R
Sbjct: 107 AVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGER 166
Query: 50 GHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
G V +S+AG GQ T+ AA++ V GL+ A A+ L
Sbjct: 167 GALVLTASIAGYEGQIGQTAYAAAKAGVIGLTIAAARDL 205
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 36.4 bits (85), Expect = 8e-04
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 34 FWLLEEFLTPMLSSGR-GHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
F + + ++S+G G + +SS+ G G T+ AAS+ V GL++ A++L
Sbjct: 128 FLVTQAAAQALVSNGCRGSIINISSIVGKVGNVGQTNYAASKAGVIGLTQTAAREL 183
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 36.3 bits (85), Expect = 8e-04
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 34 FWLLEEFLTPMLSSGRGHWVTLSSVAGLT--GQPHHTSMAASQFAVQGLSEALAQQLWKK 91
F L + M +G G + + SV T G + ++ A+ GL+ ALA++ W +
Sbjct: 106 FLLAQAAAPHMAEAGWGRVLFIGSVTTFTAGGPVPIPAYTTAKTALLGLTRALAKE-WAR 164
Query: 92 PNVHV 96
+ V
Sbjct: 165 LGIRV 169
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 36.4 bits (85), Expect = 9e-04
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 42 TPMLSSGRGHWVTLSS-VAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
L +G V +SS VAG + A ++ A+ + A L
Sbjct: 151 KEHLIKTKGEIVNVSSIVAGPQAHSGYPYYACAKAALDQYTRCTAIDL 198
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 35.7 bits (83), Expect = 0.001
Identities = 12/52 (23%), Positives = 22/52 (42%)
Query: 34 FWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALA 85
F L M G G + ++S GL + ++ A++ V G ++ A
Sbjct: 119 FHGTAAALPHMKKQGFGRIINIASAHGLVASANKSAYVAAKHGVVGFTKVTA 170
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 35.3 bits (82), Expect = 0.002
Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 10/97 (10%)
Query: 2 VIHCCGLSSPHALLDR----SMQKVKQTFELSVLSHFWLLEEFLTPML------SSGRGH 51
+++C G + +L R ++ +T ++++ F ++ M RG
Sbjct: 85 LVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGV 144
Query: 52 WVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
V +S+A GQ + AAS+ V L+ A++L
Sbjct: 145 IVNTASIAAFDGQIGQAAYAASKGGVAALTLPAAREL 181
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 35.3 bits (82), Expect = 0.002
Identities = 11/63 (17%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 34 FWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQLWKKPN 93
F + + + M+ G G + + S+ G+ ++ AA++ ++ L++ +A + + + N
Sbjct: 147 FIVSKAVIPSMIKKGHGKIINICSMMSELGRETVSAYAAAKGGLKMLTKNIASE-YGEAN 205
Query: 94 VHV 96
+
Sbjct: 206 IQC 208
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 35.3 bits (82), Expect = 0.002
Identities = 21/99 (21%), Positives = 45/99 (45%), Gaps = 12/99 (12%)
Query: 2 VIHCCGLSSPHALLDR----SMQKVKQTFELSVLSHFWLLEEFLTPML--------SSGR 49
V++C G + +L R S+ ++ +++++ F +L + + R
Sbjct: 83 VVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEER 142
Query: 50 GHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
G + +SVA GQ + +AS+ V G++ +A+ L
Sbjct: 143 GVIINTASVAAFDGQIGQAAYSASKGGVVGMTLPIARDL 181
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 35.3 bits (81), Expect = 0.002
Identities = 8/68 (11%), Positives = 23/68 (33%)
Query: 15 LDRSMQKVKQTFELSVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQ 74
+ + + ++ +++ + E + + S V +SS G + +
Sbjct: 138 MSETYELAEECLKINYNGVKSVTEVLIPLLQLSDSPRIVNVSSSTGSLKYVSNETALEIL 197
Query: 75 FAVQGLSE 82
L+E
Sbjct: 198 GDGDALTE 205
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 35.2 bits (82), Expect = 0.002
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 34 FWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQLWKKPN 93
+ L F T ML+ G G VT++S+ G + + AAS+ AV GL+ ALA + W
Sbjct: 142 WVLSRSFGTAMLAHGSGRIVTIASMLSFQGGRNVAAYAASKHAVVGLTRALASE-WAGRG 200
Query: 94 VHV 96
V V
Sbjct: 201 VGV 203
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 35.2 bits (82), Expect = 0.002
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Query: 20 QKVKQTFELSVLSHFWLLEEFLTPMLSSG----RGHWVTLSSVAGLTGQPHHT-SMAASQ 74
+KV +L+V S F +++ L + S + + SVAG++ + S+
Sbjct: 130 EKV---MQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISAMGEQAYAYGPSK 186
Query: 75 FAVQGLSEALAQQLWKKPNVHV 96
A+ LS LA++ +++V
Sbjct: 187 AALHQLSRMLAKE-LVGEHINV 207
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 34.8 bits (81), Expect = 0.003
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 32 SHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
F ML G + ++SV G G P + +A++ V GL++ +A++L
Sbjct: 140 GVFLCSRAAAKIMLKQRSGRIINIASVVGEMGNPGQANYSAAKAGVIGLTKTVAKEL 196
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann
fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus}
SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 34.8 bits (81), Expect = 0.003
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 34 FWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
F + M+ +G + ++SV GL G + AA++ V G S+ A++
Sbjct: 115 FLCTQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREG 169
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 34.8 bits (81), Expect = 0.003
Identities = 13/57 (22%), Positives = 29/57 (50%)
Query: 32 SHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
S + + ML G + ++S+AG+ G + AAS+ + G ++++A++
Sbjct: 117 SAYLCTKAVSKIMLKQKSGKIINITSIAGIIGNAGQANYAASKAGLIGFTKSIAKEF 173
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 34.5 bits (80), Expect = 0.003
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 41 LTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
P RG + +SVA GQ + +AS+ + G++ +A+ L
Sbjct: 141 NEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPIARDL 188
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 34.4 bits (80), Expect = 0.004
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 32 SHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
+ F L L PM+ + G V ++SV G G P + AA++ V G++ ALA+++
Sbjct: 139 AVFRLSRAVLRPMMKARGGRIVNITSVVGSAGNPGQVNYAAAKAGVAGMTRALAREI 195
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 34.6 bits (80), Expect = 0.004
Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 34 FWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQLWKKPN 93
F++ + + + G V + G P A++ V L+++LA + W
Sbjct: 136 FYMCKAVYSSWMKEHGGSIVNIIVP-TKAGFPLAVHSGAARAGVYNLTKSLALE-WACSG 193
Query: 94 VHV 96
+ +
Sbjct: 194 IRI 196
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 34.4 bits (80), Expect = 0.004
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 32 SHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
F +++ ML G + LSSV G G P + A++ V GL+++ A++L
Sbjct: 116 GVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAAREL 172
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain
dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 34.2 bits (79), Expect = 0.004
Identities = 17/115 (14%), Positives = 31/115 (26%), Gaps = 35/115 (30%)
Query: 2 VIHCCGLSSPHALLDRSMQKVKQTFELSVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAG- 60
++ C GL +L ++ L++ FL + + V +SSVA
Sbjct: 66 LVLCAGLGPQTKVLGN-------VVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASA 118
Query: 61 ---------------------------LTGQPHHTSMAASQFAVQGLSEALAQQL 88
Q + + A S+ A+ A
Sbjct: 119 HLAFDKNPLALALEAGEEAKARAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAW 173
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 34.4 bits (80), Expect = 0.004
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 43 PMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
M + G + + SV+GL G + + AAS+ V G++ ++A++L
Sbjct: 126 SMQRNKFGRMIFIGSVSGLWGIGNQANYAASKAGVIGMARSIAREL 171
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Length = 246
Score = 34.4 bits (80), Expect = 0.004
Identities = 16/57 (28%), Positives = 28/57 (49%)
Query: 32 SHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
F + M+ G V ++SV G+TG P + A++ V GL++ A++L
Sbjct: 116 GVFLCTKAVSRFMMRQRHGRIVNIASVVGVTGNPGQANYVAAKAGVIGLTKTSAKEL 172
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 34.4 bits (80), Expect = 0.004
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Query: 34 FWLLEEFLTPMLSSGRGHWVTLSSVAGL--TGQPHHTSMAASQFAVQGLSEALAQQL 88
F + + + G V SVAGL G H+ AA + V GL+ LA +L
Sbjct: 116 FLVARKAGEVLEEGGSL--VLTGSVAGLGAFGLAHY---AAGKLGVVGLARTLALEL 167
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation,
peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Length = 604
Score = 34.3 bits (79), Expect = 0.004
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 44 MLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQLWKKPNVHV 96
+ G + ++S +G+ G + ++S+ + GLS+ +A + K N+ V
Sbjct: 441 FVEKQFGRIINITSTSGIYGNFGQANYSSSKAGILGLSKTMAIEG-AKNNIKV 492
Score = 33.9 bits (78), Expect = 0.006
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 44 MLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQLWKKPNVHV 96
G V SS AGL G + A+++ A+ G +E LA++ K N+
Sbjct: 137 FQKQKYGRIVNTSSPAGLYGNFGQANYASAKSALLGFAETLAKEGAKY-NIKA 188
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 34.1 bits (79), Expect = 0.004
Identities = 10/64 (15%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 34 FWLLEEFLTPMLSSGR-GHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQLWKKP 92
++ E ++ + + +++++++ TG A+++ V+ +S++LA + W K
Sbjct: 140 AFVTLEIGKQLIKAQKGAAFLSITTIYAETGSGFVVPSASAKAGVEAMSKSLAAE-WGKY 198
Query: 93 NVHV 96
+
Sbjct: 199 GMRF 202
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 34.0 bits (79), Expect = 0.005
Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 34 FWLLEEFLTPMLSSGRGHWVTLSSVAGLT-GQPHHTSMAASQFAVQGLSEALAQQLWKKP 92
+++ E + + S + + S+ P+ ++ AAS+ V L++ALA++ W +
Sbjct: 135 YYVCREAFSLLRESDNPSIINIGSLTVEEVTMPNISAYAASKGGVASLTKALAKE-WGRY 193
Query: 93 NVHV 96
+ V
Sbjct: 194 GIRV 197
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 34.1 bits (79), Expect = 0.005
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 34 FWLLEEFLTPMLSSGRGHWVTLSSVAG-LTGQPHHTSMAASQFAVQGLSEALAQQL 88
+ ++ L P+ +SGRG + SS+ G +TG P + AS+ A G A +L
Sbjct: 155 VYTVQACLAPLTASGRGRVILTSSITGPVTGYPGWSHYGASKAAQLGFMRTAAIEL 210
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 34.1 bits (79), Expect = 0.005
Identities = 16/57 (28%), Positives = 34/57 (59%)
Query: 32 SHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
S F++ + M+++ G + +SS+ GLTG + ++S+ V G +++LA++L
Sbjct: 155 SLFYITQPISKRMINNRYGRIINISSIVGLTGNVGQANYSSSKAGVIGFTKSLAKEL 211
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 33.7 bits (78), Expect = 0.006
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 43 PMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
ML + +G V +SSV GL G + AAS+ + G + +LA++L
Sbjct: 132 AMLRAKKGRVVLISSVVGLLGSAGQANYAASKAGLVGFARSLAREL 177
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 33.6 bits (78), Expect = 0.006
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Query: 43 PMLSSGRGHWVTLSSVAGL--TGQPHHTSMAASQFAVQGLSEALAQQL 88
M G V +S L GQ + AAS V GL+ LA +L
Sbjct: 122 AMREKNPGSIVLTASRVYLGNLGQ---ANYAASMAGVVGLTRTLALEL 166
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 33.6 bits (78), Expect = 0.007
Identities = 15/57 (26%), Positives = 30/57 (52%)
Query: 32 SHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
S F L + L M+ +G + + SV G G + AA++ V G ++++A+++
Sbjct: 117 SIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGNAGQANYAAAKAGVIGFTKSMAREV 173
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 33.6 bits (78), Expect = 0.007
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 32 SHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
S F + +E + M+ G +++ SV G G P T+ A++ V G S++LA ++
Sbjct: 116 SIFRMSKECVRGMMKKRWGRIISIGSVVGSAGNPGQTNYCAAKAGVIGFSKSLAYEV 172
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural genomics,
secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 33.6 bits (78), Expect = 0.007
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 32 SHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
+ F E + M+ + G V ++SV G+ G P + AS+ + G + A+A++
Sbjct: 114 AVFRTTREAVKLMMKARFGRIVNITSVVGILGNPGQANYVASKAGLIGFTRAVAKEY 170
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 33.5 bits (77), Expect = 0.007
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 44 MLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQLWKKPNVHV 96
M G + +S +G+ G + +A++ + GL+ L + +K N+H
Sbjct: 138 MKKQNYGRIIMTASASGIYGNFGQANYSAAKLGLLGLANTLVIEG-RKNNIHC 189
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 33.4 bits (77), Expect = 0.008
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 12/59 (20%)
Query: 53 VTLSSVAGLTG-----------QPHHTSMAASQFAVQGLSEALAQQLWKKPNVHVTLVH 100
+T SVAGL P + ++ V + LA QL + ++ ++H
Sbjct: 150 ITTGSVAGLIAAAQPPGAGGPQGPGGAGYSYAKQLVDSYTLQLAAQLAPQ-SIRANVIH 207
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 33.2 bits (77), Expect = 0.010
Identities = 14/57 (24%), Positives = 32/57 (56%)
Query: 32 SHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
++F L E + M+ G + +SS+ G+ G P + AS+ + G++++L+ ++
Sbjct: 118 ANFILNREAIKKMIQKRYGRIINISSIVGIAGNPGQANYCASKAGLIGMTKSLSYEV 174
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 33.3 bits (77), Expect = 0.011
Identities = 8/61 (13%), Positives = 21/61 (34%), Gaps = 6/61 (9%)
Query: 34 FWLLEEFLTPMLSSGRGHW-----VTLSSVAGLTG-QPHHTSMAASQFAVQGLSEALAQQ 87
+ L + ++ + ++ S+AG TG P A++ + + +
Sbjct: 122 VMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTGGGPGAGLYGAAKAFLHNVHKNWVDF 181
Query: 88 L 88
Sbjct: 182 H 182
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 32.5 bits (75), Expect = 0.016
Identities = 16/57 (28%), Positives = 31/57 (54%)
Query: 32 SHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
+ L E + M+ G + ++S+ G+ G P T+ A++ + G S+ALAQ++
Sbjct: 135 AASTLTRELIHSMMRRRYGRIINITSIVGVVGNPGQTNYCAAKAGLIGFSKALAQEI 191
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 32.5 bits (75), Expect = 0.018
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 32 SHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
F + + L M+ G V +SSV G TG + + ++ + G +++LA++L
Sbjct: 119 GTFLVTQNSLRKMIKQRWGRIVNISSVVGFTGNVGQVNYSTTKAGLIGFTKSLAKEL 175
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 32.1 bits (74), Expect = 0.020
Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 34 FWLLEEFLTPMLSSGRGHWVTLS--SVAGLTGQPHHTSMAASQFAVQGLSEALAQQL 88
F LL+ + M G + G + ++ AA++ + L++ +A +
Sbjct: 123 FHLLKLVVPVMRKQNFGRIINYGFQGADSAPGWIYRSAFAAAKVGLVSLTKTVAYEE 179
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 32.1 bits (74), Expect = 0.025
Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 34 FWLLEEFLTPMLSSGRGHWVTLSSVAGLTG--QPHHTSMAASQFAVQGLSEALAQQL 88
F + G G V +S++G TS ++ ++ +LA +
Sbjct: 137 FHCAKAVGHHFKERGTGSLVITASMSGHIANFPQEQTSYNVAKAGCIHMARSLANEW 193
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 32.1 bits (73), Expect = 0.026
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 44 MLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQLWKKPNVHV 96
M G + SS +G+ G + A++ + GL+ +A + + NV
Sbjct: 148 MKKQNYGRIIMTSSNSGIYGNFGQVNYTAAKMGLIGLANTVAIEG-ARNNVLC 199
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 30.0 bits (68), Expect = 0.14
Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 30 VLSHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQLW 89
+ H L+ + G + SS AGL G + +A++ + L+ A ++
Sbjct: 152 TMRHAAAYWRGLSKAGKAVDGRIINTSSGAGLQGSVGQGNYSAAKAGIATLTLVGAAEMG 211
Query: 90 KKPNVHV 96
+ V V
Sbjct: 212 RY-GVTV 217
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 29.7 bits (68), Expect = 0.14
Identities = 10/66 (15%), Positives = 27/66 (40%), Gaps = 6/66 (9%)
Query: 34 FWLLEEFLTPMLSSGRGHW---VTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQLWK 90
F + M++ R + + S+ +P A++ ++ L+ ++A + W
Sbjct: 122 FLVSRSAAKRMIA--RNSGGKIINIGSLTSQAARPTVAPYTAAKGGIKMLTCSMAAE-WA 178
Query: 91 KPNVHV 96
+ N+
Sbjct: 179 QFNIQT 184
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 29.8 bits (68), Expect = 0.15
Identities = 9/57 (15%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 34 FWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQP--HHTSMAASQFAVQGLSEALAQQL 88
++ +G+G + SS++G ++ A L+++LA +
Sbjct: 149 YYCSHNIGKIFKKNGKGSLIITSSISGKIVNIPQLQAPYNTAKAACTHLAKSLAIEW 205
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 28.3 bits (63), Expect = 0.57
Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 35 WLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQFAVQGLSEALAQQ 87
L+ +T ++V SSV+ G + + A+ E + ++
Sbjct: 2000 ANLDR-VTREACPELDYFVIFSSVSCGRGNAGQANYGFANSAM----ERICEK 2047
>1z9b_A Translation initiation factor IF-2; protein synthesis translation
intiation IF2 FMet-tRNA structure; NMR {Geobacillus
stearothermophilus}
Length = 135
Score = 26.8 bits (60), Expect = 1.3
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 77 VQGLSEALAQQLWKKPN--VHVTLVH 100
VQG EAL L K V V ++H
Sbjct: 50 VQGSVEALVAALQKIDVEGVRVKIIH 75
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation
of protein synthesis, cryo-eletron microscopy,
translation/RNA complex; 13.80A {Escherichia coli}
Length = 501
Score = 25.9 bits (58), Expect = 3.1
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 77 VQGLSEALAQQLWKKPN--VHVTLVH 100
VQG EA++ L K V V ++
Sbjct: 310 VQGSVEAISDSLLKLSTDEVKVKIIG 335
>2co3_A SAFA pilus subunit; adhesion, pathogenesis, fibril protein, fold
complementation; 1.78A {Salmonella typhimurium} SCOP:
b.2.3.2 PDB: 3cre_B 3crf_B 2co7_A 3cre_A 3crf_A 2cnz_A
2cny_A 2co1_A 2co2_A 2co4_A 2co6_A
Length = 137
Score = 25.1 bits (54), Expect = 4.7
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 53 VTLSSVAGLTGQPHHTSMAASQFAVQGLS 81
V+L V+GL + S ++ V +
Sbjct: 18 VSLIPVSGLKAGKNAPSAKIAKLVVNSTT 46
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.2 bits (54), Expect = 6.3
Identities = 15/86 (17%), Positives = 27/86 (31%), Gaps = 20/86 (23%)
Query: 29 SVLSHFWLLEEFLTPMLSSGRGHWVTLSSVAGLTGQPHHTSMAASQ-----FAVQGLSEA 83
+LS W M+ V L H S+ Q ++ +
Sbjct: 390 ILLSLIWFDVIKSDVMVV-----------VNKL----HKYSLVEKQPKESTISIPSIYLE 434
Query: 84 LAQQLWKKPNVHVTLVHIYPFLLSAD 109
L +L + +H ++V Y + D
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFD 460
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional,
biotin-dependent, ligase; HET: KCX COA AGS; 2.00A
{Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Length = 1165
Score = 25.0 bits (55), Expect = 8.2
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 53 VTLSSVAGLTGQPHHTSMAAS 73
+ +++G T QP S+ +
Sbjct: 783 AAMDALSGNTSQPCLGSIVEA 803
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A
{Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A*
3hb9_A*
Length = 1150
Score = 25.0 bits (55), Expect = 8.5
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 53 VTLSSVAGLTGQPHHTSMAAS 73
++S++GLT QP S+ +
Sbjct: 766 TAVASMSGLTSQPSANSLYYA 786
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.132 0.409
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,746,259
Number of extensions: 86997
Number of successful extensions: 437
Number of sequences better than 10.0: 1
Number of HSP's gapped: 398
Number of HSP's successfully gapped: 199
Length of query: 117
Length of database: 6,701,793
Length adjustment: 80
Effective length of query: 37
Effective length of database: 4,468,113
Effective search space: 165320181
Effective search space used: 165320181
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.2 bits)