BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy9131
         (78 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2I7T|A Chain A, Structure Of Human Cpsf-73
 pdb|2I7V|A Chain A, Structure Of Human Cpsf-73
          Length = 459

 Score = 29.6 bits (65), Expect = 0.42,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query: 30  PLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQI 76
           P   L+D +E++++LIS++      ALP+  + T F+G  + T  T  I
Sbjct: 54  PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAI 102


>pdb|3D4U|A Chain A, Bovine Thrombin-Activatable Fibrinolysis Inhibitor (Tafia)
           In Complex With Tick-Derived Carboxypeptidase Inhibitor
          Length = 309

 Score = 29.3 bits (64), Expect = 0.66,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 16  CGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSM 51
           C +++  + PE +P +  + DF   N+  I  Y+SM
Sbjct: 160 CSEIYCGTYPESEPEVKAVADFLRRNIKHIKAYISM 195


>pdb|3DGV|A Chain A, Crystal Structure Of Thrombin Activatable Fibrinolysis
           Inhibitor (Tafi)
 pdb|3DGV|B Chain B, Crystal Structure Of Thrombin Activatable Fibrinolysis
           Inhibitor (Tafi)
 pdb|3DGV|C Chain C, Crystal Structure Of Thrombin Activatable Fibrinolysis
           Inhibitor (Tafi)
 pdb|3OSL|A Chain A, Structure Of Bovine Thrombin-Activatable Fibrinolysis
           Inhibitor In Complex With Tick Carboxypeptidase
           Inhibitor
 pdb|3OSL|C Chain C, Structure Of Bovine Thrombin-Activatable Fibrinolysis
           Inhibitor In Complex With Tick Carboxypeptidase
           Inhibitor
          Length = 401

 Score = 29.3 bits (64), Expect = 0.66,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 16  CGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSM 51
           C +++  + PE +P +  + DF   N+  I  Y+SM
Sbjct: 252 CSEIYCGTYPESEPEVKAVADFLRRNIKHIKAYISM 287


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,165,266
Number of Sequences: 62578
Number of extensions: 66476
Number of successful extensions: 108
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 105
Number of HSP's gapped (non-prelim): 3
length of query: 78
length of database: 14,973,337
effective HSP length: 47
effective length of query: 31
effective length of database: 12,032,171
effective search space: 372997301
effective search space used: 372997301
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)