Query psy9131
Match_columns 78
No_of_seqs 118 out of 630
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 19:42:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9131.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9131hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1782 Predicted metal-depend 99.9 2E-24 4.3E-29 167.7 5.6 75 2-77 188-273 (637)
2 KOG1136|consensus 99.9 2E-22 4.2E-27 151.8 5.8 75 3-77 12-100 (501)
3 KOG1137|consensus 99.9 1.9E-22 4.1E-27 157.5 2.4 76 3-78 22-106 (668)
4 TIGR03675 arCOG00543 arCOG0054 99.8 2.3E-21 4.9E-26 153.0 5.6 75 2-77 182-267 (630)
5 COG1236 YSH1 Predicted exonucl 99.8 3.1E-20 6.8E-25 140.8 6.4 76 2-78 8-89 (427)
6 KOG1135|consensus 99.6 5.1E-16 1.1E-20 123.6 6.0 76 3-78 10-92 (764)
7 KOG1138|consensus 99.6 7.8E-17 1.7E-21 125.6 0.5 67 12-78 69-135 (653)
8 TIGR00649 MG423 conserved hypo 99.6 3.3E-15 7.1E-20 112.1 7.3 73 2-76 8-96 (422)
9 COG0595 mRNA degradation ribon 99.4 4.5E-13 9.7E-18 105.2 6.1 75 2-77 16-105 (555)
10 smart00849 Lactamase_B Metallo 99.3 3.7E-12 8.1E-17 82.5 3.7 71 3-75 1-77 (183)
11 PRK00055 ribonuclease Z; Revie 99.2 7.8E-12 1.7E-16 86.9 2.0 69 6-75 18-96 (270)
12 TIGR02108 PQQ_syn_pqqB coenzym 99.1 5E-11 1.1E-15 87.3 4.7 69 5-75 35-115 (302)
13 PRK02113 putative hydrolase; P 99.1 4E-11 8.8E-16 83.8 3.8 70 5-75 32-105 (252)
14 PRK11244 phnP carbon-phosphoru 99.1 1.2E-10 2.6E-15 81.7 5.5 68 4-74 33-103 (250)
15 PRK05184 pyrroloquinoline quin 99.1 1.4E-10 3E-15 84.5 6.0 70 4-75 35-116 (302)
16 TIGR02651 RNase_Z ribonuclease 99.1 5.9E-11 1.3E-15 84.5 3.1 70 5-75 15-94 (299)
17 TIGR03307 PhnP phosphonate met 99.1 2.3E-10 5.1E-15 79.6 5.7 66 6-74 25-93 (238)
18 PF00753 Lactamase_B: Metallo- 99.0 1.8E-11 4E-16 78.3 -0.9 67 4-71 2-76 (194)
19 TIGR02649 true_RNase_BN ribonu 99.0 2E-10 4.3E-15 82.8 3.0 70 5-75 14-97 (303)
20 COG1237 Metal-dependent hydrol 99.0 4.4E-10 9.5E-15 81.6 4.3 66 8-73 22-94 (259)
21 PRK00685 metal-dependent hydro 98.9 2.2E-09 4.7E-14 73.6 6.1 72 1-75 1-76 (228)
22 PRK11921 metallo-beta-lactamas 98.8 4.9E-09 1.1E-13 78.5 4.0 69 5-75 30-106 (394)
23 PRK02126 ribonuclease Z; Provi 98.7 3.2E-08 7E-13 73.4 4.9 66 7-76 15-89 (334)
24 PF12706 Lactamase_B_2: Beta-l 98.6 6.3E-09 1.4E-13 68.8 0.5 59 18-76 2-69 (194)
25 PRK05452 anaerobic nitric oxid 98.6 3.6E-08 7.8E-13 76.1 4.2 70 5-75 32-108 (479)
26 PRK04286 hypothetical protein; 98.6 2.4E-08 5.3E-13 72.6 2.4 69 6-74 13-105 (298)
27 COG1234 ElaC Metal-dependent h 98.6 3.1E-08 6.8E-13 72.2 2.3 60 3-63 15-79 (292)
28 COG1235 PhnP Metal-dependent h 98.2 8.4E-07 1.8E-11 63.3 2.1 37 37-75 60-98 (269)
29 TIGR00361 ComEC_Rec2 DNA inter 98.1 3.7E-06 8E-11 66.9 4.7 60 8-70 450-522 (662)
30 TIGR03413 GSH_gloB hydroxyacyl 98.1 1.7E-06 3.6E-11 61.4 2.2 61 10-73 12-77 (248)
31 PF13483 Lactamase_B_3: Beta-l 98.1 7.9E-06 1.7E-10 53.8 4.9 45 6-53 5-52 (163)
32 PRK11709 putative L-ascorbate 98.0 3.1E-05 6.7E-10 58.2 6.9 40 36-75 106-149 (355)
33 PRK11539 ComEC family competen 97.9 1.2E-05 2.5E-10 65.1 4.4 60 8-70 511-583 (755)
34 COG0426 FpaA Uncharacterized f 97.8 1.2E-05 2.5E-10 61.5 2.8 71 4-76 32-110 (388)
35 COG0491 GloB Zn-dependent hydr 97.8 2E-05 4.4E-10 52.7 3.7 62 8-71 25-95 (252)
36 COG2333 ComEC Predicted hydrol 97.7 6.4E-05 1.4E-09 55.5 5.3 63 8-72 54-124 (293)
37 PRK10241 hydroxyacylglutathion 97.7 2.2E-05 4.8E-10 55.8 2.2 61 10-73 14-80 (251)
38 COG2220 Predicted Zn-dependent 97.5 0.00018 3.8E-09 50.8 4.8 67 6-73 12-87 (258)
39 PLN02469 hydroxyacylglutathion 97.4 0.0001 2.2E-09 53.0 2.2 60 10-72 14-80 (258)
40 PLN02398 hydroxyacylglutathion 97.2 0.00018 4E-09 53.7 1.9 61 9-73 88-155 (329)
41 PLN02962 hydroxyacylglutathion 96.8 0.00074 1.6E-08 48.5 1.8 65 5-71 20-94 (251)
42 TIGR02650 RNase_Z_T_toga ribon 96.7 0.0011 2.3E-08 48.9 2.1 41 17-59 19-62 (277)
43 PF02112 PDEase_II: cAMP phosp 95.2 0.054 1.2E-06 40.8 5.5 36 38-75 78-121 (335)
44 KOG0813|consensus 94.9 0.024 5.3E-07 41.6 2.8 63 8-70 13-84 (265)
45 COG2248 Predicted hydrolase (m 93.8 0.064 1.4E-06 39.9 3.0 71 6-76 13-112 (304)
46 KOG2121|consensus 93.7 0.01 2.2E-07 48.8 -1.5 50 9-59 462-523 (746)
47 KOG1137|consensus 91.8 0.24 5.1E-06 40.3 3.8 75 2-76 157-251 (668)
48 KOG3798|consensus 90.4 0.43 9.3E-06 35.8 3.8 44 6-49 86-142 (343)
49 PF13691 Lactamase_B_4: tRNase 84.2 1.5 3.3E-05 25.6 2.9 41 8-49 12-56 (63)
50 KOG3592|consensus 82.9 0.52 1.1E-05 39.5 0.8 47 12-58 52-102 (934)
51 PF14597 Lactamase_B_5: Metall 78.7 0.56 1.2E-05 33.3 -0.3 70 3-74 18-88 (199)
52 KOG4736|consensus 77.3 3.2 6.8E-05 31.3 3.3 35 18-54 106-142 (302)
53 KOG1361|consensus 76.9 1.8 4E-05 34.3 2.0 34 38-76 111-147 (481)
54 cd07206 Pat_TGL3-4-5_SDP1 Tria 56.2 2.1 4.6E-05 31.9 -1.3 53 16-73 198-251 (298)
55 cd07202 cPLA2_Grp-IVC Group IV 54.6 14 0.0003 29.1 2.9 42 15-58 280-323 (430)
56 PF13911 AhpC-TSA_2: AhpC/TSA 44.8 15 0.00033 22.4 1.5 41 34-76 8-48 (115)
57 KOG1138|consensus 44.0 34 0.00074 28.1 3.6 18 8-25 12-30 (653)
58 cd07201 cPLA2_Grp-IVB-IVD-IVE- 36.6 34 0.00074 27.8 2.6 30 19-48 374-404 (541)
59 COG2015 Alkyl sulfatase and re 35.7 18 0.00039 29.6 0.9 23 37-59 162-186 (655)
60 PHA02700 ORF017 DNA-binding ph 31.6 57 0.0012 21.0 2.6 20 1-20 1-22 (106)
61 COG5212 PDE1 Low-affinity cAMP 29.8 22 0.00047 27.2 0.5 36 38-75 111-152 (356)
62 cd00147 cPLA2_like Cytosolic p 28.3 62 0.0013 25.4 2.8 27 19-45 290-318 (438)
63 TIGR03688 pupylate_PafA2 prote 27.0 53 0.0011 26.3 2.2 29 3-32 75-105 (485)
64 cd07210 Pat_hypo_W_succinogene 26.8 51 0.0011 22.9 1.9 35 13-49 141-175 (221)
65 cd04848 Peptidases_S8_Autotran 26.7 59 0.0013 21.9 2.2 16 18-33 6-22 (267)
66 PF07684 NODP: NOTCH protein; 24.0 34 0.00074 19.8 0.5 15 5-19 1-15 (63)
67 PF08323 Glyco_transf_5: Starc 22.4 51 0.0011 23.1 1.3 19 39-60 133-153 (245)
No 1
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=99.90 E-value=2e-24 Score=167.66 Aligned_cols=75 Identities=21% Similarity=0.314 Sum_probs=63.1
Q ss_pred CCCcccCCeEEEEeCC-eEEEeCcCCC------CCCCC--CCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEec
Q psy9131 2 DTERMHRSTVGRECCG-KVFVDSAPEF------QPPLS--QLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYAT 70 (78)
Q Consensus 2 ~~~~V~~S~~l~e~~~-~~llDcG~~~------~~p~~--~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T 70 (78)
+.+||||||+++++.+ ++|||||++. ..|.+ +.+.+..+|||+||||| |||.||+|++ .||.|+||||
T Consensus 188 g~~EVGRSa~lv~T~eSrVLlDcG~n~a~~~~~~~Pyl~vpE~~~~~lDAViiTHAHLDH~G~lP~Lfk-Ygy~GPVY~T 266 (637)
T COG1782 188 GFREVGRSALLVSTPESRVLLDCGVNVAGNGEDAFPYLDVPEFQPDELDAVIITHAHLDHCGFLPLLFK-YGYDGPVYCT 266 (637)
T ss_pred cchhccceeEEEecCCceEEEeccccCCCCccccCcccccccccccccceEEEeecccccccchhhhhh-cCCCCCeeeC
Confidence 4689999999999988 8999999732 22322 23555689999999999 9999999995 8999999999
Q ss_pred hhhhhcc
Q psy9131 71 EPTLQIG 77 (78)
Q Consensus 71 ~~T~~l~ 77 (78)
+||++|.
T Consensus 267 ~PTRDlm 273 (637)
T COG1782 267 PPTRDLM 273 (637)
T ss_pred CCcHHHH
Confidence 9999974
No 2
>KOG1136|consensus
Probab=99.86 E-value=2e-22 Score=151.83 Aligned_cols=75 Identities=24% Similarity=0.396 Sum_probs=65.3
Q ss_pred CCcccCCeEEEEeCC-eEEEeCcCC------CCCCCCCCCCC-----CCccEEEecCCC--CcchhhhhhhccCCcceEE
Q psy9131 3 TERMHRSTVGRECCG-KVFVDSAPE------FQPPLSQLVDF-----SEVNMILISNYL--SMLALPFITEGTGFEGVVY 68 (78)
Q Consensus 3 ~~~V~~S~~l~e~~~-~~llDcG~~------~~~p~~~~~~~-----~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy 68 (78)
.|+|||||+++.++| .+.+||||. .+.|+++.+.. +-||+|+|||+| |||+|||.++..||.|+||
T Consensus 12 GQdvGrSCilvsi~Gk~iM~DCGMHMG~nD~rRfPdFSyI~~~g~~~~~idCvIIsHFHlDHcGaLPyfsEv~GY~GPIY 91 (501)
T KOG1136|consen 12 GQDVGRSCILVSIGGKNIMFDCGMHMGFNDDRRFPDFSYISKSGRFTDAIDCVIISHFHLDHCGALPYFSEVVGYDGPIY 91 (501)
T ss_pred CcccCceEEEEEECCcEEEEecccccccCccccCCCceeecCCCCcccceeEEEEeeecccccccccchHhhhCCCCceE
Confidence 589999999999999 567999982 34477765543 569999999999 9999999999999999999
Q ss_pred echhhhhcc
Q psy9131 69 ATEPTLQIG 77 (78)
Q Consensus 69 ~T~~T~~l~ 77 (78)
||.||++++
T Consensus 92 Mt~PTkaic 100 (501)
T KOG1136|consen 92 MTYPTKAIC 100 (501)
T ss_pred Eecchhhhc
Confidence 999999875
No 3
>KOG1137|consensus
Probab=99.85 E-value=1.9e-22 Score=157.52 Aligned_cols=76 Identities=30% Similarity=0.423 Sum_probs=70.4
Q ss_pred CCcccCCeEEEEeCC-eEEEeCcC------CCCCCCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhh
Q psy9131 3 TERMHRSTVGRECCG-KVFVDSAP------EFQPPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPT 73 (78)
Q Consensus 3 ~~~V~~S~~l~e~~~-~~llDcG~------~~~~p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T 73 (78)
.+||||||+++|++| ++++|||. ...+|.++.+|++.||.++|||+| |+++|||+++|+.|+|++|||+||
T Consensus 22 g~EVGRSC~ile~kGk~iMld~gvhpaysg~aslpf~d~vd~s~id~llIthFhldh~aslp~~~qkTsf~grvfmth~T 101 (668)
T KOG1137|consen 22 GNEVGRSCHILEYKGKTIMLDCGVHPAYSGMASLPFYDEVDLSAIDPLLITHFHLDHAASLPFTLQKTSFIGRVFMTHPT 101 (668)
T ss_pred CcccCceEEEEEecCeEEEeccccCccccccccccchhhcccccccHHHHhhhhhhhcccccceeeeccccceeEEecch
Confidence 589999999999999 56799995 356799999999999999999999 999999999999999999999999
Q ss_pred hhccC
Q psy9131 74 LQIGK 78 (78)
Q Consensus 74 ~~l~r 78 (78)
+.+.|
T Consensus 102 kAi~k 106 (668)
T KOG1137|consen 102 KAIYK 106 (668)
T ss_pred HHHHH
Confidence 98765
No 4
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=99.84 E-value=2.3e-21 Score=152.98 Aligned_cols=75 Identities=19% Similarity=0.325 Sum_probs=63.0
Q ss_pred CCCcccCCeEEEEeCC-eEEEeCcCCCC------CCCC--CCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEec
Q psy9131 2 DTERMHRSTVGRECCG-KVFVDSAPEFQ------PPLS--QLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYAT 70 (78)
Q Consensus 2 ~~~~V~~S~~l~e~~~-~~llDcG~~~~------~p~~--~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T 70 (78)
.++||||||++++.++ ++|||||+... .|.+ ..+++.+||+|||||+| |+|+||+|++ .||+|+||||
T Consensus 182 g~~eVG~Sc~Ll~~~~~~ILIDcG~~~~~~~~~~~p~l~~~~~~~~~IDaVlITHaH~DHiG~LP~L~k-~g~~gpIY~T 260 (630)
T TIGR03675 182 GFREVGRSALLLSTPESRILLDCGVNVGANGDNAYPYLDVPEFQLDELDAVVITHAHLDHSGLVPLLFK-YGYDGPVYCT 260 (630)
T ss_pred cCCccCCCEEEEEECCCEEEEECCCCccccchhhcccccccCCCHHHCcEEEECCCCHHHHhhHHHHHH-hCCCCceeec
Confidence 4699999999999988 77899997432 1322 22457899999999999 9999999996 7899999999
Q ss_pred hhhhhcc
Q psy9131 71 EPTLQIG 77 (78)
Q Consensus 71 ~~T~~l~ 77 (78)
+||++++
T Consensus 261 ~pT~~l~ 267 (630)
T TIGR03675 261 PPTRDLM 267 (630)
T ss_pred HHHHHHH
Confidence 9999875
No 5
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=3.1e-20 Score=140.84 Aligned_cols=76 Identities=32% Similarity=0.460 Sum_probs=62.2
Q ss_pred CCCcccCCeEEEEeCC-eEEEeCcCCCCCC--CCCCCCC-CCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhh
Q psy9131 2 DTERMHRSTVGRECCG-KVFVDSAPEFQPP--LSQLVDF-SEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQ 75 (78)
Q Consensus 2 ~~~~V~~S~~l~e~~~-~~llDcG~~~~~p--~~~~~~~-~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~ 75 (78)
.++||||||++++.++ ++++|||+....+ ..+..++ .+|||++|||+| |+|+||++++ .+|+++||||+||+.
T Consensus 8 ~~~evg~s~~~l~~~~~~il~D~G~~~~~~~~~~p~~~~~~~vDavllTHaHlDH~g~lp~l~~-~~~~~~v~aT~~T~~ 86 (427)
T COG1236 8 AAREVGRSCVLLETGGTRILLDCGLFPGDPSPERPLLPPFPKVDAVLLTHAHLDHIGALPYLVR-NGFEGPVYATPPTAA 86 (427)
T ss_pred ccCCcCcEEEEEEECCceEEEECCCCcCcCCccCCCCCCCCCcCEEEeccCchhhhcccHHHHH-hccCCceeeccCHHH
Confidence 4789999999999998 7899999854322 3332211 179999999999 9999999997 569999999999999
Q ss_pred ccC
Q psy9131 76 IGK 78 (78)
Q Consensus 76 l~r 78 (78)
+++
T Consensus 87 l~~ 89 (427)
T COG1236 87 LLK 89 (427)
T ss_pred HHH
Confidence 874
No 6
>KOG1135|consensus
Probab=99.62 E-value=5.1e-16 Score=123.62 Aligned_cols=76 Identities=21% Similarity=0.360 Sum_probs=64.4
Q ss_pred CCcccCCeEEEEeCC-eEEEeCcCC--CCCCCCCCCC--CCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhh
Q psy9131 3 TERMHRSTVGRECCG-KVFVDSAPE--FQPPLSQLVD--FSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQ 75 (78)
Q Consensus 3 ~~~V~~S~~l~e~~~-~~llDcG~~--~~~p~~~~~~--~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~ 75 (78)
+.+=+.-|++++++| ++|||||.. +..+.+.++. ..+||||||||+. |+|||||++.+.|++.+||||.|+..
T Consensus 10 ~~de~~~cyllqiD~~~iLiDcGwd~~f~~~~i~~l~~~i~~iDaILLShpd~~hlGaLpY~~~k~gl~~~VYAT~PV~~ 89 (764)
T KOG1135|consen 10 ATDEGPLCYLLQIDGVRILIDCGWDESFDMSMIKELKPVIPTIDAILLSHPDILHLGALPYAVGKLGLNAPVYATLPVIK 89 (764)
T ss_pred ccCCCcceEEEEEcCeEEEEeCCCcchhccchhhhhhcccccccEEEecCCChHHhccchhhHhhCCccceEEEecchhh
Confidence 455577899999999 889999963 4444444332 4889999999999 99999999999999999999999999
Q ss_pred ccC
Q psy9131 76 IGK 78 (78)
Q Consensus 76 l~r 78 (78)
|||
T Consensus 90 mG~ 92 (764)
T KOG1135|consen 90 MGQ 92 (764)
T ss_pred hhh
Confidence 986
No 7
>KOG1138|consensus
Probab=99.61 E-value=7.8e-17 Score=125.57 Aligned_cols=67 Identities=63% Similarity=1.112 Sum_probs=63.1
Q ss_pred EEEeCCeEEEeCcCCCCCCCCCCCCCCCccEEEecCCCCcchhhhhhhccCCcceEEechhhhhccC
Q psy9131 12 GRECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSMLALPFITEGTGFEGVVYATEPTLQIGK 78 (78)
Q Consensus 12 l~e~~~~~llDcG~~~~~p~~~~~~~~~iDavliSh~HH~g~LP~l~~~~gf~g~Iy~T~~T~~l~r 78 (78)
+.|+.|++++|.-+++.+|....+|.++||+||||++|.+.||||+++.+||.|+||||+||.|+||
T Consensus 69 lke~~~rvfvesppe~~l~~t~lld~stiDvILISNy~~mlgLPfiTentGF~gkiY~TE~t~qiGr 135 (653)
T KOG1138|consen 69 LKECCGRVFVESPPEFTLPATHLLDASTIDVILISNYMGMLGLPFITENTGFFGKIYATEPTAQIGR 135 (653)
T ss_pred HHHhCCceEEcCCchhccchhhhhcccceeEEEEcchhhhcccceeecCCCceeEEEEechHHHHHH
Confidence 3467789999999999999999999999999999999999999999999999999999999999987
No 8
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=99.59 E-value=3.3e-15 Score=112.12 Aligned_cols=73 Identities=16% Similarity=0.190 Sum_probs=57.3
Q ss_pred CCCcccCCeEEEEeCC-eEEEeCcCCCC----------CCCCCCC--CCCCccEEEecCCC--CcchhhhhhhccCCc-c
Q psy9131 2 DTERMHRSTVGRECCG-KVFVDSAPEFQ----------PPLSQLV--DFSEVNMILISNYL--SMLALPFITEGTGFE-G 65 (78)
Q Consensus 2 ~~~~V~~S~~l~e~~~-~~llDcG~~~~----------~p~~~~~--~~~~iDavliSh~H--H~g~LP~l~~~~gf~-g 65 (78)
+++|||+||++++.++ .+|||||.... .|++..+ ...+||+|+|||+| |+|+||+|.+. ++ .
T Consensus 8 G~~eiG~n~~ll~~~~~~iliD~G~~~~~~~~~g~~~~iPd~~~l~~~~~~i~~I~iTH~H~DHiggl~~l~~~--~~~~ 85 (422)
T TIGR00649 8 GLGEIGKNMYVVEIDDDVFIFDAGILFPEDAMLGVDGVIPDFSYLQENQDKVKGIFITHGHEDHIGAVPYLFHT--VGFP 85 (422)
T ss_pred CCCccCCeEEEEEECCeEEEEeCCCCCCcccccCCccccCCHHHHHhccccCCEEEECCCChHHhCcHHHHHHh--CCCC
Confidence 4689999999999988 56899997322 1222222 35789999999999 99999999863 44 6
Q ss_pred eEEechhhhhc
Q psy9131 66 VVYATEPTLQI 76 (78)
Q Consensus 66 ~Iy~T~~T~~l 76 (78)
+||+|+.|.++
T Consensus 86 ~Vy~~~~t~~~ 96 (422)
T TIGR00649 86 PIYGTPLTIAL 96 (422)
T ss_pred eEEeCHHHHHH
Confidence 89999999865
No 9
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.40 E-value=4.5e-13 Score=105.22 Aligned_cols=75 Identities=17% Similarity=0.254 Sum_probs=59.3
Q ss_pred CCCcccCCeEEEEeCCeE-EEeCcCCC---CC-------CCCCCC--CCCCccEEEecCCC--CcchhhhhhhccCCcce
Q psy9131 2 DTERMHRSTVGRECCGKV-FVDSAPEF---QP-------PLSQLV--DFSEVNMILISNYL--SMLALPFITEGTGFEGV 66 (78)
Q Consensus 2 ~~~~V~~S~~l~e~~~~~-llDcG~~~---~~-------p~~~~~--~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~ 66 (78)
+-+|+|++|+.+++++.+ ++|||..+ ++ |++..+ +..+|++|+|||+| |+|+||||+.+..| .+
T Consensus 16 G~~EiGkN~~vve~~~~i~i~D~G~~fp~~~~~gvDliIPd~~yl~~n~~kvkgI~lTHgHeDHIGaip~ll~~~~~-~p 94 (555)
T COG0595 16 GVGEIGKNMYVVEYGDDIIILDAGLKFPEDDLLGVDLIIPDFSYLEENKDKVKGIFLTHGHEDHIGALPYLLKQVLF-AP 94 (555)
T ss_pred ChhhhccceEEEEECCcEEEEECccccCccccccccEEecChHHhhhccccceEEEecCCchhhccchHHHHhcCCc-Cc
Confidence 458999999999999965 69999632 11 444322 45799999999999 99999999974332 89
Q ss_pred EEechhhhhcc
Q psy9131 67 VYATEPTLQIG 77 (78)
Q Consensus 67 Iy~T~~T~~l~ 77 (78)
||+|+.|..|-
T Consensus 95 iy~s~lt~~Li 105 (555)
T COG0595 95 IYASPLTAALI 105 (555)
T ss_pred eecCHhhHHHH
Confidence 99999998874
No 10
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.27 E-value=3.7e-12 Score=82.50 Aligned_cols=71 Identities=18% Similarity=0.199 Sum_probs=55.1
Q ss_pred CCcccCCeEEEEeCC-eEEEeCcCCCCCC---CCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhh
Q psy9131 3 TERMHRSTVGRECCG-KVFVDSAPEFQPP---LSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQ 75 (78)
Q Consensus 3 ~~~V~~S~~l~e~~~-~~llDcG~~~~~p---~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~ 75 (78)
.++.+++|++++.++ .+|+|||...... .+....+++||+|++||.| |++++|.+.+. ++.+||+++.+.+
T Consensus 1 ~~~~~~~~~li~~~~~~iliD~g~~~~~~~~~~l~~~~~~~i~~i~iTH~H~DH~~g~~~~~~~--~~~~i~~~~~~~~ 77 (183)
T smart00849 1 LGGVGVNSYLVEGDGGAILIDTGPGEAEDLLAELKKLGPKDIDAIILTHGHPDHIGGLPELLEA--PGAPVYAPEGTAE 77 (183)
T ss_pred CCccceeEEEEEeCCceEEEeCCCChhHHHHHHHHHcCchhhcEEEecccCcchhccHHHHHhC--CCCcEEEchhhhH
Confidence 367889999999988 5789999532211 1222347899999999999 99999999974 6789999887764
No 11
>PRK00055 ribonuclease Z; Reviewed
Probab=99.18 E-value=7.8e-12 Score=86.92 Aligned_cols=69 Identities=13% Similarity=0.118 Sum_probs=49.9
Q ss_pred ccCCeEEEEeCC-eEEEeCcCC--CCCCCCCCCCCCCccEEEecCCC--CcchhhhhhhccC-----CcceEEechhhhh
Q psy9131 6 MHRSTVGRECCG-KVFVDSAPE--FQPPLSQLVDFSEVNMILISNYL--SMLALPFITEGTG-----FEGVVYATEPTLQ 75 (78)
Q Consensus 6 V~~S~~l~e~~~-~~llDcG~~--~~~p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~g-----f~g~Iy~T~~T~~ 75 (78)
-.+||++++.++ ++|||||.- .++... .+++++||+|+|||.| |+++||.+....- -+-+||+.+.+.+
T Consensus 18 r~~~~~li~~~~~~iLiD~G~g~~~~l~~~-~~~~~~i~~i~lTH~H~DHi~Gl~~l~~~~~~~~~~~~l~iy~p~~~~~ 96 (270)
T PRK00055 18 RNVSSILLRLGGELFLFDCGEGTQRQLLKT-GIKPRKIDKIFITHLHGDHIFGLPGLLSTRSLSGRTEPLTIYGPKGIKE 96 (270)
T ss_pred CCCCEEEEEECCcEEEEECCHHHHHHHHHc-CCCHHHCCEEEEeCCCchhhCcHHHHHHHhhhcCCCceEEEECCccHHH
Confidence 368999999987 678999962 111111 2577899999999999 9999998773221 1246998776654
No 12
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=99.14 E-value=5e-11 Score=87.26 Aligned_cols=69 Identities=20% Similarity=0.275 Sum_probs=53.5
Q ss_pred cccCCeEEEEeCC--eEEEeCcCC-----CCCCCC---CCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechh
Q psy9131 5 RMHRSTVGRECCG--KVFVDSAPE-----FQPPLS---QLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEP 72 (78)
Q Consensus 5 ~V~~S~~l~e~~~--~~llDcG~~-----~~~p~~---~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~ 72 (78)
.-++|+++|+.++ ++|||||+. .+...+ ..+++++||+|||||.| |+.+|+.|.+ +.+-+||+++.
T Consensus 35 ~R~rss~ll~~~g~~~iLID~Gpd~r~ql~~~~~~~~~~gl~~~~IdaI~lTH~H~DHi~GL~~L~~--~~~lpVya~~~ 112 (302)
T TIGR02108 35 ARTQSSIAVSADGERWVLLNASPDIRQQIQATPALHPQRGLRHTPIAGVVLTDGEIDHTTGLLTLRE--GQPFTLYATEM 112 (302)
T ss_pred cccccEEEEEeCCCEEEEEECCHHHHHHHHhCcccccccCCCcccCCEEEEeCCCcchhhCHHHHcC--CCCceEEECHH
Confidence 5678999997644 568999982 122222 13678999999999999 9999999964 36789999999
Q ss_pred hhh
Q psy9131 73 TLQ 75 (78)
Q Consensus 73 T~~ 75 (78)
|.+
T Consensus 113 t~~ 115 (302)
T TIGR02108 113 VLQ 115 (302)
T ss_pred HHH
Confidence 874
No 13
>PRK02113 putative hydrolase; Provisional
Probab=99.14 E-value=4e-11 Score=83.79 Aligned_cols=70 Identities=19% Similarity=0.237 Sum_probs=50.3
Q ss_pred cccCCeEEEEeCC-eEEEeCcCCCCCCCCCCCCCCCccEEEecCCC--Ccchhhhhhhc-cCCcceEEechhhhh
Q psy9131 5 RMHRSTVGRECCG-KVFVDSAPEFQPPLSQLVDFSEVNMILISNYL--SMLALPFITEG-TGFEGVVYATEPTLQ 75 (78)
Q Consensus 5 ~V~~S~~l~e~~~-~~llDcG~~~~~p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~-~gf~g~Iy~T~~T~~ 75 (78)
.-.+||++++.++ ++|||||+-... .....++.+||+|+|||.| |+++||.+... .+.+-+||+++.+.+
T Consensus 32 ~R~~~s~li~~~~~~iLiD~G~g~~~-~l~~~~~~~id~I~lTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~ 105 (252)
T PRK02113 32 NRLRTSALVETEGARILIDCGPDFRE-QMLRLPFGKIDAVLITHEHYDHVGGLDDLRPFCRFGEVPIYAEQYVAE 105 (252)
T ss_pred cceeeEEEEEECCeEEEEECCchHHH-HHHhcCccccCEEEECCCChhhhCCHHHHHHhccCCCceEEECHHHHH
Confidence 3467999999988 678999972111 0111256889999999999 99999987531 123578999887654
No 14
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=99.12 E-value=1.2e-10 Score=81.72 Aligned_cols=68 Identities=18% Similarity=0.147 Sum_probs=50.2
Q ss_pred CcccCCeEEEEeCC-eEEEeCcCCCCCCCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhh
Q psy9131 4 ERMHRSTVGRECCG-KVFVDSAPEFQPPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTL 74 (78)
Q Consensus 4 ~~V~~S~~l~e~~~-~~llDcG~~~~~p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~ 74 (78)
.+-.+||++++.++ ++|||||.. .+.. .+++.+||+|+|||.| |+++|+.+....+-+-+||+++.+.
T Consensus 33 ~~r~~~s~li~~~~~~iLiD~G~~-~~~~--~~~~~~i~~i~iTH~H~DHi~gl~~l~~~~~~~i~i~~~~~~~ 103 (250)
T PRK11244 33 YRRRPCSALIEFNGARTLIDAGLP-DLAE--RFPPGSLQQILLTHYHMDHVQGLFPLRWGVGDPIPVYGPPDPE 103 (250)
T ss_pred CCcceeEEEEEECCCEEEEECCCh-HHhh--cCCcccCCEEEEccCchhhhccHHHHHhhcCCceeEEeCCchh
Confidence 34567899999988 788999952 1111 2567899999999999 9999987753223346899987653
No 15
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=99.12 E-value=1.4e-10 Score=84.54 Aligned_cols=70 Identities=20% Similarity=0.249 Sum_probs=53.0
Q ss_pred CcccCCeEEEEeCC-e-EEEeCcCC--CCCCC---CC---CCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEech
Q psy9131 4 ERMHRSTVGRECCG-K-VFVDSAPE--FQPPL---SQ---LVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATE 71 (78)
Q Consensus 4 ~~V~~S~~l~e~~~-~-~llDcG~~--~~~p~---~~---~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~ 71 (78)
.+-++||++++.+| . +|||||+- .++.. .. -++..+||+|+|||+| |+.+||.|.+ +.+-+||+++
T Consensus 35 ~~R~~ss~li~~~g~~~iLiD~G~g~~~ql~~~~~~~~~~g~~~~~ldav~lTH~H~DHi~Gl~~l~~--~~~l~Vyg~~ 112 (302)
T PRK05184 35 KPRTQSSIAVSADGEDWVLLNASPDIRQQIQATPALQPARGLRDTPIAAVVLTDGQIDHTTGLLTLRE--GQPFPVYATP 112 (302)
T ss_pred CcccccEEEEEcCCCEEEEEECChhHHHHHHhchhcCccccCCcccccEEEEeCCchhhhhChHhhcc--CCCeEEEeCH
Confidence 56789999999866 4 68999972 11111 11 1466799999999999 9999999953 4567899998
Q ss_pred hhhh
Q psy9131 72 PTLQ 75 (78)
Q Consensus 72 ~T~~ 75 (78)
.|.+
T Consensus 113 ~~~~ 116 (302)
T PRK05184 113 AVLE 116 (302)
T ss_pred HHHH
Confidence 8875
No 16
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=99.09 E-value=5.9e-11 Score=84.49 Aligned_cols=70 Identities=16% Similarity=0.170 Sum_probs=50.5
Q ss_pred cccCCeEEEEeCC-eEEEeCcCC--CCCCCCCCCCCCCccEEEecCCC--CcchhhhhhhccCC-----cceEEechhhh
Q psy9131 5 RMHRSTVGRECCG-KVFVDSAPE--FQPPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGF-----EGVVYATEPTL 74 (78)
Q Consensus 5 ~V~~S~~l~e~~~-~~llDcG~~--~~~p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf-----~g~Iy~T~~T~ 74 (78)
.-..||++++.++ ++|||||.- .++... .+++.+||+|+|||+| |+++||.+.....+ +-+||+.+.+.
T Consensus 15 ~r~~~~~~v~~~~~~iLiD~G~g~~~~l~~~-~~~~~~i~~IfiTH~H~DH~~Gl~~l~~~~~~~~~~~~i~Iy~p~~~~ 93 (299)
T TIGR02651 15 ERNLPSIALKLNGELWLFDCGEGTQRQMLRS-GISPMKIDRIFITHLHGDHILGLPGLLSTMSFQGRKEPLTIYGPPGIK 93 (299)
T ss_pred CCCCceEEEEECCeEEEEECCHHHHHHHHHc-CCCHHHCcEEEEECCchhhhcChHHHHHhhccCCCCceEEEECCccHH
Confidence 3467999999988 678999962 111111 2466889999999999 99999988743222 24699987765
Q ss_pred h
Q psy9131 75 Q 75 (78)
Q Consensus 75 ~ 75 (78)
+
T Consensus 94 ~ 94 (299)
T TIGR02651 94 E 94 (299)
T ss_pred H
Confidence 4
No 17
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=99.08 E-value=2.3e-10 Score=79.62 Aligned_cols=66 Identities=17% Similarity=0.151 Sum_probs=49.1
Q ss_pred ccCCeEEEEeCC-eEEEeCcCCCCCCCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhh
Q psy9131 6 MHRSTVGRECCG-KVFVDSAPEFQPPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTL 74 (78)
Q Consensus 6 V~~S~~l~e~~~-~~llDcG~~~~~p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~ 74 (78)
-.+||++++.++ .+|||||... .. ..+++.+||+|+|||.| |+++|+.+....+-+-+||+++.+.
T Consensus 25 r~~~s~~i~~~~~~iliD~G~~~-~~--~~~~~~~id~i~iTH~H~DHi~gl~~l~~~~~~~~~v~~~~~~~ 93 (238)
T TIGR03307 25 RQPCSAVIEFNGARTLIDAGLTD-LA--ERFPPGSLQAILLTHYHMDHVQGLFPLRWGVGEPIPVYGPPDEE 93 (238)
T ss_pred CcceEEEEEECCcEEEEECCChh-Hh--hccCccCCCEEEEecCchhhhcchHHHHHhcCCceeEEeCchHh
Confidence 457899999988 6789999521 11 12467899999999999 9999987654333356899988764
No 18
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=99.05 E-value=1.8e-11 Score=78.32 Aligned_cols=67 Identities=9% Similarity=0.098 Sum_probs=49.5
Q ss_pred CcccCCeEEEEeCC-eEEEeCcCCCCCC-----CCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEech
Q psy9131 4 ERMHRSTVGRECCG-KVFVDSAPEFQPP-----LSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATE 71 (78)
Q Consensus 4 ~~V~~S~~l~e~~~-~~llDcG~~~~~p-----~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~ 71 (78)
++.+.+|++++.++ .+|||+|.....+ .....+.++|++||+||+| |+|+++.+.++. -...+++..
T Consensus 2 ~~~~~n~~li~~~~~~iliD~G~~~~~~~~~~~~~~~~~~~~i~~vi~TH~H~DH~ggl~~~~~~~-~~~~~~~~~ 76 (194)
T PF00753_consen 2 GEGGSNSYLIEGGDGAILIDTGLDPDFAKELELALLGISGEDIDAVILTHAHPDHIGGLPELLEAG-PVVIIYSSA 76 (194)
T ss_dssp SSEEEEEEEEEETTEEEEESEBSSHHHHHHHHHHHHHHTGGGEEEEEESSSSHHHHTTHHHHHHHT-TEEEEEEHH
T ss_pred CCeeEEEEEEEECCEEEEEeCCCCchhhHHhhhhHhhccCCCeEEEEECccccccccccccccccc-ceeeeeccc
Confidence 56788999999988 5689999732221 2234678999999999999 999999999743 233444433
No 19
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=99.01 E-value=2e-10 Score=82.77 Aligned_cols=70 Identities=14% Similarity=0.141 Sum_probs=49.3
Q ss_pred cccCCeEEEEeC-----CeEEEeCcCCC--CCCCCCCCCCCCccEEEecCCC--Ccchhhhhhhcc---C--CcceEEec
Q psy9131 5 RMHRSTVGRECC-----GKVFVDSAPEF--QPPLSQLVDFSEVNMILISNYL--SMLALPFITEGT---G--FEGVVYAT 70 (78)
Q Consensus 5 ~V~~S~~l~e~~-----~~~llDcG~~~--~~p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~---g--f~g~Iy~T 70 (78)
.-.-||++++.+ +++|||||.-. ++... .+++.+||+|+|||.| |+++||.+.... | -+-+||+.
T Consensus 14 ~r~~s~~lv~~~~~~~~~~iLiD~G~g~~~~l~~~-~i~~~~id~IfiTH~H~DHi~Gl~~ll~~~~~~~~~~~l~Iygp 92 (303)
T TIGR02649 14 TRNVTAILLNLQHPTQSGLWLFDCGEGTQHQLLHT-AFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGP 92 (303)
T ss_pred CCCccEEEEEccCCCCCCEEEEECCccHHHHHHHh-CCCHHHCcEEEEeCCChhhcCCHHHHHHHHHhcCCCCCeEEEec
Confidence 345689999973 36789999621 11122 2577999999999999 999999765311 2 12479998
Q ss_pred hhhhh
Q psy9131 71 EPTLQ 75 (78)
Q Consensus 71 ~~T~~ 75 (78)
+.+.+
T Consensus 93 ~~~~~ 97 (303)
T TIGR02649 93 QGIRE 97 (303)
T ss_pred hhHHH
Confidence 87764
No 20
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=98.99 E-value=4.4e-10 Score=81.64 Aligned_cols=66 Identities=18% Similarity=0.211 Sum_probs=50.5
Q ss_pred CCeEEEEeCC-eEEEeCcCCCC----CCCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhh
Q psy9131 8 RSTVGRECCG-KVFVDSAPEFQ----PPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPT 73 (78)
Q Consensus 8 ~S~~l~e~~~-~~llDcG~~~~----~p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T 73 (78)
|-++|+|.++ ++|+|.|.... +-..--+|+++||+|+|||.| |+|+||++.+.+.=..+||+.+-.
T Consensus 22 GfS~LVE~~~~riLFDtG~~~~~ll~Na~~lgvd~~did~vvlSHgH~DH~GGL~~~~~~~~~~i~v~ahp~a 94 (259)
T COG1237 22 GFSALVEDEGTRILFDTGTDSDVLLHNARLLGVDLRDIDAVVLSHGHYDHTGGLPYLLEENNPGIPVYAHPDA 94 (259)
T ss_pred ceEEEEEcCCeEEEEeCCCCcHHHHHHHHHcCCCcccCcEEEEeCCCccccCchHhHHhccCCCceEEeChHH
Confidence 4567899988 78999995311 112224799999999999999 999999998755334689998755
No 21
>PRK00685 metal-dependent hydrolase; Provisional
Probab=98.95 E-value=2.2e-09 Score=73.58 Aligned_cols=72 Identities=19% Similarity=0.147 Sum_probs=50.7
Q ss_pred CCCCcccCCeEEEEeCC-eEEEeCcCCCCCCCCC-CCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhh
Q psy9131 1 MDTERMHRSTVGRECCG-KVFVDSAPEFQPPLSQ-LVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQ 75 (78)
Q Consensus 1 ~~~~~V~~S~~l~e~~~-~~llDcG~~~~~p~~~-~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~ 75 (78)
|+-.=+|-||++++.++ ++|+|++... .|... ..+..++|+|||||.| |++.++.+..+ .+.+||+++-+++
T Consensus 1 m~i~~lG~s~~li~~~~~~iLiDP~~~~-~~~~~~~~~~~~id~vliTH~H~DH~~~~~~~~~~--~~~~v~~~~~~~~ 76 (228)
T PRK00685 1 MKITWLGHSAFLIETGGKKILIDPFITG-NPLADLKPEDVKVDYILLTHGHGDHLGDTVEIAKR--TGATVIANAELAN 76 (228)
T ss_pred CEEEEEcceEEEEEECCEEEEECCCCCC-CCCCCCChhcCcccEEEeCCCCccccccHHHHHHh--CCCEEEEeHHHHH
Confidence 44455788999999999 7789986421 11111 1223489999999999 99988877642 4578998876554
No 22
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=98.80 E-value=4.9e-09 Score=78.46 Aligned_cols=69 Identities=13% Similarity=0.101 Sum_probs=51.1
Q ss_pred cccCCeEEEEeCCeEEEeCcCCCCCCC----C-CCCCCCCccEEEecCCC--CcchhhhhhhccCC-cceEEechhhhh
Q psy9131 5 RMHRSTVGRECCGKVFVDSAPEFQPPL----S-QLVDFSEVNMILISNYL--SMLALPFITEGTGF-EGVVYATEPTLQ 75 (78)
Q Consensus 5 ~V~~S~~l~e~~~~~llDcG~~~~~p~----~-~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf-~g~Iy~T~~T~~ 75 (78)
..+-+||+++.++.+|||+|.....+. + ..+++++||.|++||.| |+|++|.+.+. | ..+||+++.+.+
T Consensus 30 g~~~NsyLI~~~~~vLIDtg~~~~~~~~~~~l~~~~~~~~Id~IilTH~H~DHiggl~~l~~~--~p~a~V~~~~~~~~ 106 (394)
T PRK11921 30 GSSYNSYLIKDEKTVLIDTVWQPFAKEFVENLKKEIDLDKIDYIVANHGEIDHSGALPELMKE--IPDTPIYCTKNGAK 106 (394)
T ss_pred ceEEEEEEEeCCCEEEEeCCCCCcHHHHHHHHHhhcCcccCCEEEeCCCCCchhhHHHHHHHH--CCCCEEEECHHHHH
Confidence 346679999865577899994211111 1 13567899999999999 99999999864 4 478999988764
No 23
>PRK02126 ribonuclease Z; Provisional
Probab=98.66 E-value=3.2e-08 Score=73.40 Aligned_cols=66 Identities=5% Similarity=0.050 Sum_probs=48.5
Q ss_pred cCCeEEEEeC--C-eEEEeCcCCCCCCCCCCCCCCCccEEEecCCC--CcchhhhhhhccCC----cceEEechhhhhc
Q psy9131 7 HRSTVGRECC--G-KVFVDSAPEFQPPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGF----EGVVYATEPTLQI 76 (78)
Q Consensus 7 ~~S~~l~e~~--~-~~llDcG~~~~~p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf----~g~Iy~T~~T~~l 76 (78)
.-+|+++..+ + .+|||||. .. .+...+..+||+|+|||.| |++++|.|.+.. + +-+||+.+.|.++
T Consensus 15 ~dn~~~l~~~~~~~~iLiD~G~-~~--~l~~~~~~~i~~I~iTH~H~DHi~Gl~~l~~~~-~~r~~~l~iygp~~~~~~ 89 (334)
T PRK02126 15 DDPGLYVDFLFERRALLFDLGD-LH--HLPPRELLRISHIFVSHTHMDHFIGFDRLLRHC-LGRPRRLRLFGPPGFADQ 89 (334)
T ss_pred CCcEEEEEECCCCeEEEEcCCC-HH--HHhhcCCCccCEEEEcCCChhHhCcHHHHHHHh-ccCCCCeEEEECHHHHHH
Confidence 3578888863 5 56899997 11 1222467899999999999 999999998632 2 2389998888763
No 24
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=98.65 E-value=6.3e-09 Score=68.77 Aligned_cols=59 Identities=15% Similarity=0.411 Sum_probs=37.2
Q ss_pred eEEEeCcCC-----CC-CCCCCCCCCCCccEEEecCCC--CcchhhhhhhccC-CcceEEechhhhhc
Q psy9131 18 KVFVDSAPE-----FQ-PPLSQLVDFSEVNMILISNYL--SMLALPFITEGTG-FEGVVYATEPTLQI 76 (78)
Q Consensus 18 ~~llDcG~~-----~~-~p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~g-f~g~Iy~T~~T~~l 76 (78)
++|+|||+. .. .+.....+..+||+|+|||+| |+.+||.|....- ..++||+++.+.+.
T Consensus 2 ~iLiD~g~~~~~~~~~~~~~~~~~~~~~id~v~iTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~ 69 (194)
T PF12706_consen 2 RILIDCGPGTRSLRLRQQIMQELEDLPDIDAVFITHSHPDHIAGLPSLIPAWAKHPKPIYGPPETKEF 69 (194)
T ss_dssp EEEESE-TTHHHHTHCHHHTCSSSSSGCEEEEE-SBSSHHHHTTHHHHHHHHHHCTTEEEECHHHHHH
T ss_pred EEEEeCCCCcccccccccccccccccCCCCEEEECCCCccccCChHHHHHHhhcccceEEecHHHHHH
Confidence 578999982 12 111111133499999999999 9899887774321 11389999988764
No 25
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=98.62 E-value=3.6e-08 Score=76.07 Aligned_cols=70 Identities=13% Similarity=0.106 Sum_probs=51.6
Q ss_pred cccCCeEEEEeCCeEEEeCcCCCCCC----CC-CCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhh
Q psy9131 5 RMHRSTVGRECCGKVFVDSAPEFQPP----LS-QLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQ 75 (78)
Q Consensus 5 ~V~~S~~l~e~~~~~llDcG~~~~~p----~~-~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~ 75 (78)
..+.+||+++.+..+|||.|.....+ .+ ..+++.+||+|++||.| |+|++|.|.++. -..+||+++.+.+
T Consensus 32 G~t~NsYLI~~~~~vLIDtg~~~~~~~~l~~l~~~~~~~~Id~IilTH~H~DH~Ggl~~Ll~~~-p~a~V~~s~~~~~ 108 (479)
T PRK05452 32 GSSYNSYLIREEKNVLIDTVDHKFSREFVQNLRNEIDLADIDYIVINHAEEDHAGALTELMAQI-PDTPIYCTANAID 108 (479)
T ss_pred CcEEEEEEEECCCEEEEeCCCcccHHHHHHHHHhcCCHhhCCEEEeCCCCcchhchHHHHHHHC-CCCEEEECHHHHH
Confidence 34778999985557789999421111 11 12467899999999999 999999999742 2588999998864
No 26
>PRK04286 hypothetical protein; Provisional
Probab=98.59 E-value=2.4e-08 Score=72.63 Aligned_cols=69 Identities=14% Similarity=0.117 Sum_probs=43.7
Q ss_pred ccCCeEEEEeCC-eEEEeCcCCC-----CCCCCC-------------CCCCCCccEEEecCCC--Ccchhhhhhhcc---
Q psy9131 6 MHRSTVGRECCG-KVFVDSAPEF-----QPPLSQ-------------LVDFSEVNMILISNYL--SMLALPFITEGT--- 61 (78)
Q Consensus 6 V~~S~~l~e~~~-~~llDcG~~~-----~~p~~~-------------~~~~~~iDavliSh~H--H~g~LP~l~~~~--- 61 (78)
+-.+|++++.++ ++|||+|... ..|..+ ....++||+|||||.| |++++..+.-..
T Consensus 13 ~~~~~~~I~~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~id~IliTH~H~DHi~g~~~~~y~~~~~ 92 (298)
T PRK04286 13 VRSMATFVETKDVRILIDPGVSLAPRRYGLPPHPIELERLEEVREKILEYAKKADVITISHYHYDHHTPFYEDPYELSDE 92 (298)
T ss_pred ceeeEEEEEECCeEEEEcCCCCcCccccCCCCcchhHHHHHHHHHHhhcccccCCEEEecCCccccCCCccccccccccc
Confidence 345999999988 7889999421 222111 1346789999999999 997765441001
Q ss_pred CCcceEEechhhh
Q psy9131 62 GFEGVVYATEPTL 74 (78)
Q Consensus 62 gf~g~Iy~T~~T~ 74 (78)
.++-+||.+.++.
T Consensus 93 ~~~i~iy~~~~~~ 105 (298)
T PRK04286 93 EIPKEIYKGKIVL 105 (298)
T ss_pred cchHHHhcCceec
Confidence 1234566665543
No 27
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=98.56 E-value=3.1e-08 Score=72.18 Aligned_cols=60 Identities=18% Similarity=0.200 Sum_probs=42.2
Q ss_pred CCcccCCeEEEEeCC-eEEEeCcC--CCCCCCCCCCCCCCccEEEecCCC--CcchhhhhhhccCC
Q psy9131 3 TERMHRSTVGRECCG-KVFVDSAP--EFQPPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGF 63 (78)
Q Consensus 3 ~~~V~~S~~l~e~~~-~~llDcG~--~~~~p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf 63 (78)
+.+-..|.++++.++ +.|+|||- ..++.. ..+.+.+||+|+|||.| |+.+||-|+....|
T Consensus 15 t~~r~~~s~ll~~~~~~~L~DcGeGt~~~l~~-~~~~~~~i~~IfITH~H~DHi~gL~~ll~~~~~ 79 (292)
T COG1234 15 TKDRNVSSILLRLEGEKFLFDCGEGTQHQLLR-AGLPPRKIDAIFITHLHGDHIAGLPGLLVSRSF 79 (292)
T ss_pred cCccccceeEEEeCCeeEEEECCHhHHHHHHH-hcCChhhccEEEeeccccchhcCcHHHHHHhhc
Confidence 445566788999877 67899994 111111 23566799999999999 99999966643434
No 28
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=98.18 E-value=8.4e-07 Score=63.29 Aligned_cols=37 Identities=19% Similarity=0.334 Sum_probs=31.2
Q ss_pred CCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhh
Q psy9131 37 FSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQ 75 (78)
Q Consensus 37 ~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~ 75 (78)
+..+|+||+||.| |+.++|.|.++ |.-++|+++.|..
T Consensus 60 ~~~idai~~TH~H~DHi~Gl~~l~~~--~~~~~~~~~~~~~ 98 (269)
T COG1235 60 VSDLDAILLTHEHSDHIQGLDDLRRA--YTLPIYVNPGTLR 98 (269)
T ss_pred ccccCeEEEecccHHhhcChHHHHHH--hcCCcccccceec
Confidence 3699999999999 99999999974 6678888776654
No 29
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=98.12 E-value=3.7e-06 Score=66.93 Aligned_cols=60 Identities=10% Similarity=0.132 Sum_probs=44.2
Q ss_pred CCeEEEEeCCe-EEEeCcCCCCC---------CCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCc-ceEEec
Q psy9131 8 RSTVGRECCGK-VFVDSAPEFQP---------PLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFE-GVVYAT 70 (78)
Q Consensus 8 ~S~~l~e~~~~-~llDcG~~~~~---------p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~-g~Iy~T 70 (78)
|.|++++.+++ +++|+|..... |.......+ ||.+++||.| |+|+++.+.++ |+ .+||..
T Consensus 450 Gdaili~~~~~~iLIDtG~~~~~~~~~~~~l~p~L~~~Gi~-ID~lilTH~d~DHiGGl~~ll~~--~~v~~i~~~ 522 (662)
T TIGR00361 450 GLAMFIGANGKGILYDTGEPWREGSLGEKVIIPFLTAKGIK-LEALILSHADQDHIGGAEIILKH--HPVKRLVIP 522 (662)
T ss_pred ceEEEEEECCeEEEEeCCCCCCCCCccHHHHHHHHHHcCCC-cCEEEECCCchhhhCcHHHHHHh--CCccEEEec
Confidence 67899999884 57999963211 223333455 9999999999 99999999864 66 567754
No 30
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=98.10 E-value=1.7e-06 Score=61.36 Aligned_cols=61 Identities=13% Similarity=0.017 Sum_probs=40.9
Q ss_pred eEEEEeCC--eEEEeCcCCCCC-CCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhh
Q psy9131 10 TVGRECCG--KVFVDSAPEFQP-PLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPT 73 (78)
Q Consensus 10 ~~l~e~~~--~~llDcG~~~~~-p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T 73 (78)
+|++..++ .++||+|..... ..+... ..++++|++||.| |+|+++.+.+. |..+||+++.+
T Consensus 12 ~yli~~~~~~~ilID~g~~~~i~~~l~~~-g~~l~~Il~TH~H~DHigG~~~l~~~--~~~~V~~~~~~ 77 (248)
T TIGR03413 12 IWLLHDPDGQAAVVDPGEAEPVLDALEAR-GLTLTAILLTHHHHDHVGGVAELLEA--FPAPVYGPAEE 77 (248)
T ss_pred EEEEEcCCCCEEEEcCCChHHHHHHHHHc-CCeeeEEEeCCCCccccCCHHHHHHH--CCCeEEecccc
Confidence 56666544 567999952110 111111 2358999999999 99999999864 55789987643
No 31
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=98.07 E-value=7.9e-06 Score=53.79 Aligned_cols=45 Identities=16% Similarity=0.096 Sum_probs=28.7
Q ss_pred ccCCeEEEEeCC-eEEEeCcCCCCCCCCCCCCCCCccEEEecCCC--Ccch
Q psy9131 6 MHRSTVGRECCG-KVFVDSAPEFQPPLSQLVDFSEVNMILISNYL--SMLA 53 (78)
Q Consensus 6 V~~S~~l~e~~~-~~llDcG~~~~~p~~~~~~~~~iDavliSh~H--H~g~ 53 (78)
.|-||+++|.+| ++++|.... .+.+. ..+.++|+|+|||.| |+..
T Consensus 5 lgha~~~ie~~g~~iliDP~~~--~~~~~-~~~~~~D~IlisH~H~DH~~~ 52 (163)
T PF13483_consen 5 LGHASFLIETGGKRILIDPWFS--SVGYA-PPPPKADAILISHSHPDHFDP 52 (163)
T ss_dssp EETTEEEEEETTEEEEES--TT--T--T--TSS-B-SEEEESSSSTTT-CC
T ss_pred EEeeEEEEEECCEEEEECCCCC--ccCcc-cccCCCCEEEECCCccccCCh
Confidence 588999999999 678999842 11111 124899999999999 7654
No 32
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=97.96 E-value=3.1e-05 Score=58.21 Aligned_cols=40 Identities=5% Similarity=0.071 Sum_probs=25.8
Q ss_pred CCCCccEEEecCCC--Cc--chhhhhhhccCCcceEEechhhhh
Q psy9131 36 DFSEVNMILISNYL--SM--LALPFITEGTGFEGVVYATEPTLQ 75 (78)
Q Consensus 36 ~~~~iDavliSh~H--H~--g~LP~l~~~~gf~g~Iy~T~~T~~ 75 (78)
+...||+|||||.| |+ ..+..|.+..+-..++++...+.+
T Consensus 106 ~i~~IDaVLiTH~H~DHlD~~tl~~l~~~~~~~~~~v~p~~~~~ 149 (355)
T PRK11709 106 AIREIDAVLATHDHSDHIDVNVAAAVLQNCADHVKFIGPQACVD 149 (355)
T ss_pred HCCCCCEEEECCCcccccChHHHHHHHhhcCCCcEEEEcHHHHH
Confidence 34789999999999 98 345555542222356777655543
No 33
>PRK11539 ComEC family competence protein; Provisional
Probab=97.93 E-value=1.2e-05 Score=65.10 Aligned_cols=60 Identities=15% Similarity=0.164 Sum_probs=43.8
Q ss_pred CCeEEEEeCCe-EEEeCcCCCCC---------CCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCc-ceEEec
Q psy9131 8 RSTVGRECCGK-VFVDSAPEFQP---------PLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFE-GVVYAT 70 (78)
Q Consensus 8 ~S~~l~e~~~~-~llDcG~~~~~---------p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~-g~Iy~T 70 (78)
|.|.+++.+++ +++|+|..... |....... ++|.|++||.| |+|+++.+.++ |+ .+||..
T Consensus 511 G~a~li~~~~~~lLiDtG~~~~~~~~~~~~i~P~L~~~Gi-~lD~lilSH~d~DH~GGl~~Ll~~--~~~~~i~~~ 583 (755)
T PRK11539 511 GLAVVIERNGKAILYDTGNAWPTGDSAQQVIIPWLRWHGL-TPEGIILSHEHLDHRGGLASLLHA--WPMAWIRSP 583 (755)
T ss_pred ceEEEEEECCEEEEEeCCCCCCCCcchHHHHHHHHHHcCC-CcCEEEeCCCCcccCCCHHHHHHh--CCcceeecc
Confidence 67888998885 57999973211 22222334 59999999999 99999999863 54 678865
No 34
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=97.84 E-value=1.2e-05 Score=61.51 Aligned_cols=71 Identities=15% Similarity=0.185 Sum_probs=55.0
Q ss_pred CcccCCeEEEEeCC-eEEEeCcCC-CCC----CCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhh
Q psy9131 4 ERMHRSTVGRECCG-KVFVDSAPE-FQP----PLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQ 75 (78)
Q Consensus 4 ~~V~~S~~l~e~~~-~~llDcG~~-~~~----p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~ 75 (78)
+.++-+.||+. ++ .+|||-+-. +.. .....+|+++||.|+++|.. |+|+||.+.+... +.+|+||.+.++
T Consensus 32 ~GttyNSYLI~-~~k~aLID~~~~~~~~~~l~~l~~~id~k~iDYIi~~H~ePDhsg~l~~ll~~~p-~a~ii~s~~~~~ 109 (388)
T COG0426 32 RGTTYNSYLIV-GDKTALIDTVGEKFFDEYLENLSKYIDPKEIDYIIVNHTEPDHSGSLPELLELAP-NAKIICSKLAAR 109 (388)
T ss_pred CCceeeeEEEe-CCcEEEECCCCcchHHHHHHHHHhhcChhcCeEEEECCCCcchhhhHHHHHHhCC-CCEEEeeHHHHH
Confidence 56788899999 66 568999842 110 11235799999999999999 9999999997543 699999998765
Q ss_pred c
Q psy9131 76 I 76 (78)
Q Consensus 76 l 76 (78)
+
T Consensus 110 ~ 110 (388)
T COG0426 110 F 110 (388)
T ss_pred H
Confidence 4
No 35
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=97.84 E-value=2e-05 Score=52.72 Aligned_cols=62 Identities=16% Similarity=0.101 Sum_probs=39.3
Q ss_pred CCeEEEEeCC--eEEEeCcCCCC----C-CCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEech
Q psy9131 8 RSTVGRECCG--KVFVDSAPEFQ----P-PLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATE 71 (78)
Q Consensus 8 ~S~~l~e~~~--~~llDcG~~~~----~-p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~ 71 (78)
.+++++..++ .++||+|.... . ........ +|+.|++||.| |+|++..+.+... ..++|..+
T Consensus 25 ~~~~~~~~~~~~~~liD~G~~~~~~~~~~~~l~~~~~-~i~~vilTH~H~DH~gg~~~~~~~~~-~~~~~~~~ 95 (252)
T COG0491 25 NSVYLLVDGEGGAVLIDTGLGDADAEALLEALAALGL-DVDAILLTHGHFDHIGGAAVLKEAFG-AAPVIAPA 95 (252)
T ss_pred ccEEEEEcCCCceEEEeCCCCchHHHHHHHHHHHcCC-ChheeeecCCchhhhccHHHHHhhcC-CceEEccc
Confidence 3445555533 67899997422 1 11222223 89999999999 9999998886432 35664443
No 36
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=97.75 E-value=6.4e-05 Score=55.48 Aligned_cols=63 Identities=6% Similarity=0.096 Sum_probs=47.6
Q ss_pred CCeEEEEeCC-eEEEeCcCCCC----CCCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCc-ceEEechh
Q psy9131 8 RSTVGRECCG-KVFVDSAPEFQ----PPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFE-GVVYATEP 72 (78)
Q Consensus 8 ~S~~l~e~~~-~~llDcG~~~~----~p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~-g~Iy~T~~ 72 (78)
|...+++.++ +.++|-|.... .|.+......+||.+|+||+| |+|+++.+.+. |+ ..+|+-.+
T Consensus 54 g~a~li~~~~~~~l~dtg~~~~~~~iip~Lk~~GV~~iD~lIlTH~d~DHiGg~~~vl~~--~~v~~~~i~~~ 124 (293)
T COG2333 54 GLATLIRSEGKTILYDTGNSMGQDVIIPYLKSLGVRKLDQLILTHPDADHIGGLDEVLKT--IKVPELWIYAG 124 (293)
T ss_pred CeEEEEeeCCceEEeecCcccCceeehhhHhHcCCccccEEEeccCCccccCCHHHHHhh--CCCCcEEEeCC
Confidence 4477888878 56799997311 266667788999999999999 99999999963 44 46666433
No 37
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=97.70 E-value=2.2e-05 Score=55.81 Aligned_cols=61 Identities=16% Similarity=0.066 Sum_probs=39.4
Q ss_pred eEEEEe-CC-eEEEeCcCCCCC-CCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCc-ceEEechhh
Q psy9131 10 TVGREC-CG-KVFVDSAPEFQP-PLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFE-GVVYATEPT 73 (78)
Q Consensus 10 ~~l~e~-~~-~~llDcG~~~~~-p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~-g~Iy~T~~T 73 (78)
++++.. ++ .++||.|..... ..+... -.++|+|++||.| |+|+++.|.++ |+ .+||+...+
T Consensus 14 ~~li~~~~~~~ilIDpg~~~~vl~~l~~~-g~~l~~IllTH~H~DHigG~~~l~~~--~~~~~V~~~~~~ 80 (251)
T PRK10241 14 IWVLNDEAGRCLIVDPGEAEPVLNAIAEN-NWQPEAIFLTHHHHDHVGGVKELVEK--FPQIVVYGPQET 80 (251)
T ss_pred EEEEEcCCCcEEEECCCChHHHHHHHHHc-CCccCEEEeCCCCchhhccHHHHHHH--CCCCEEEecccc
Confidence 356654 34 467999942110 011111 1357899999999 99999999874 54 689986543
No 38
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=97.53 E-value=0.00018 Score=50.77 Aligned_cols=67 Identities=13% Similarity=0.061 Sum_probs=42.5
Q ss_pred ccCCeEEEEeCC-eEEEeCcCCCCC-C-C----CCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhh
Q psy9131 6 MHRSTVGRECCG-KVFVDSAPEFQP-P-L----SQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPT 73 (78)
Q Consensus 6 V~~S~~l~e~~~-~~llDcG~~~~~-p-~----~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T 73 (78)
.|-||+++|.++ ++|+|=...... + . ..+.....+|+|+|||-| |+. .+.+..+..=+..++.++..
T Consensus 12 lGha~~lie~~~~~iliDP~~~~~~~~~~~~~~~~~~~~~~~D~ilitH~H~DHl~-~~~~~~~~~~~~~~~~~p~~ 87 (258)
T COG2220 12 LGHAAFLIETGGKRILIDPVLSGAPSPSNFPGGLFEDLLPPIDYILITHDHYDHLD-DETLIALRTNKAPVVVVPLG 87 (258)
T ss_pred ecceEEEEEECCEEEEECcccCCCCCcccccCcCChhhcCCCCEEEEeCCCccccC-HHHHHHHhcCCCcEEEeHHH
Confidence 578999999999 678987752111 1 1 223456789999999999 755 35544332113455555544
No 39
>PLN02469 hydroxyacylglutathione hydrolase
Probab=97.39 E-value=0.0001 Score=52.96 Aligned_cols=60 Identities=10% Similarity=-0.076 Sum_probs=40.3
Q ss_pred eEEEEeCC---eEEEeCcCCCCC-CCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCc-ceEEechh
Q psy9131 10 TVGRECCG---KVFVDSAPEFQP-PLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFE-GVVYATEP 72 (78)
Q Consensus 10 ~~l~e~~~---~~llDcG~~~~~-p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~-g~Iy~T~~ 72 (78)
||++..++ .++||.|-.... ..... ...+|++||+||.| |+|+++.|.++ |. .+||+...
T Consensus 14 ~Yli~d~~~~~~vlIDp~~~~~il~~l~~-~g~~l~~Il~TH~H~DH~gG~~~l~~~--~~~~~V~~~~~ 80 (258)
T PLN02469 14 AYLIIDESTKDAAVVDPVDPEKVLQAAHE-HGAKIKLVLTTHHHWDHAGGNEKIKKL--VPGIKVYGGSL 80 (258)
T ss_pred EEEEEeCCCCeEEEECCCChHHHHHHHHH-cCCcccEEEecCCCCccccCHHHHHHH--CCCCEEEEech
Confidence 78886542 468998831000 00111 13579999999999 99999999874 43 68998643
No 40
>PLN02398 hydroxyacylglutathione hydrolase
Probab=97.20 E-value=0.00018 Score=53.73 Aligned_cols=61 Identities=10% Similarity=-0.048 Sum_probs=41.4
Q ss_pred CeEEEEeCC---eEEEeCcCCCCCCCCCC--CCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhh
Q psy9131 9 STVGRECCG---KVFVDSAPEFQPPLSQL--VDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPT 73 (78)
Q Consensus 9 S~~l~e~~~---~~llDcG~~~~~p~~~~--~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T 73 (78)
.||++...+ .++||-|- ..+-... -...+|++||+||.| |+|++..|.++ |..+||+....
T Consensus 88 y~Yli~d~~t~~~~vVDP~~--a~~vl~~l~~~g~~L~~ILlTH~H~DH~GG~~~L~~~--~ga~V~g~~~~ 155 (329)
T PLN02398 88 YAYLLHDEDTGTVGVVDPSE--AVPVIDALSRKNRNLTYILNTHHHYDHTGGNLELKAR--YGAKVIGSAVD 155 (329)
T ss_pred EEEEEEECCCCEEEEEcCCC--HHHHHHHHHhcCCCceEEEECCCCchhhCCHHHHHHh--cCCEEEEehHH
Confidence 477775432 35799773 1111110 123579999999999 99999999875 45899998654
No 41
>PLN02962 hydroxyacylglutathione hydrolase
Probab=96.78 E-value=0.00074 Score=48.51 Aligned_cols=65 Identities=6% Similarity=-0.111 Sum_probs=41.1
Q ss_pred cccCCeEEEEe----CC-eEEEeCcCCCCCCCCCCC--CCCCccEEEecCCC--CcchhhhhhhccCC-cceEEech
Q psy9131 5 RMHRSTVGREC----CG-KVFVDSAPEFQPPLSQLV--DFSEVNMILISNYL--SMLALPFITEGTGF-EGVVYATE 71 (78)
Q Consensus 5 ~V~~S~~l~e~----~~-~~llDcG~~~~~p~~~~~--~~~~iDavliSh~H--H~g~LP~l~~~~gf-~g~Iy~T~ 71 (78)
..+-.||++-. ++ .++||.|..........+ .-.+|.+||+||.| |+++++.|.++ | ..++|+.+
T Consensus 20 ~~~~~~Yll~d~~~~~~~avlIDP~~~~~~~~l~~l~~~g~~i~~Il~TH~H~DHigg~~~l~~~--~~~a~v~~~~ 94 (251)
T PLN02962 20 ESSTYTYLLADVSHPDKPALLIDPVDKTVDRDLSLVKELGLKLIYAMNTHVHADHVTGTGLLKTK--LPGVKSIISK 94 (251)
T ss_pred CceeEEEEEEeCCCCCCEEEEECCCCCcHHHHHHHHHHCCCeeEEEEcCCCCchhHHHHHHHHHH--CCCCeEEecc
Confidence 34557888764 23 468998842100111111 12468899999999 99999999864 4 36777754
No 42
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=96.69 E-value=0.0011 Score=48.87 Aligned_cols=41 Identities=5% Similarity=-0.025 Sum_probs=28.9
Q ss_pred CeEEEe-CcCCCCCCCCCCCCCCCccEEEecCCC--Ccchhhhhhh
Q psy9131 17 GKVFVD-SAPEFQPPLSQLVDFSEVNMILISNYL--SMLALPFITE 59 (78)
Q Consensus 17 ~~~llD-cG~~~~~p~~~~~~~~~iDavliSh~H--H~g~LP~l~~ 59 (78)
.++++| .| ...+..-.--...++.|+|||+| |+|+||.++.
T Consensus 19 ~~ilfD~ag--~g~~~~l~~k~~~l~~vFlTH~H~DHi~gL~~~~~ 62 (277)
T TIGR02650 19 EEIIFDAAE--EGSSTLGGKKVAAFKVFFLHGGHDDHAAGLGGVNI 62 (277)
T ss_pred hhheehhhc--ccchhHHhhhHhhcCEEEeecCchhhhcchHHHHh
Confidence 378899 88 23333222234778999999999 9999976654
No 43
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=95.22 E-value=0.054 Score=40.81 Aligned_cols=36 Identities=14% Similarity=0.191 Sum_probs=27.2
Q ss_pred CCccEEEecCCC--CcchhhhhhhccCC------cceEEechhhhh
Q psy9131 38 SEVNMILISNYL--SMLALPFITEGTGF------EGVVYATEPTLQ 75 (78)
Q Consensus 38 ~~iDavliSh~H--H~g~LP~l~~~~gf------~g~Iy~T~~T~~ 75 (78)
+.|.+.+|||+| |+.||=.-. .++ +-+||+.+.|.+
T Consensus 78 ~~I~~ylItH~HLDHi~gLvins--p~~~~~~~~~K~i~gl~~ti~ 121 (335)
T PF02112_consen 78 NHIKGYLITHPHLDHIAGLVINS--PEDYLPNSSPKTIYGLPSTIE 121 (335)
T ss_pred HhhheEEecCCchhhHHHHHhcC--cccccccCCCCcEEECHHHHH
Confidence 478999999999 999983222 334 357999998875
No 44
>KOG0813|consensus
Probab=94.93 E-value=0.024 Score=41.61 Aligned_cols=63 Identities=11% Similarity=-0.033 Sum_probs=38.8
Q ss_pred CCeEEEEeCC-eEEEeCcC----CCCCCCCCCC--CCCCccEEEecCCC--CcchhhhhhhccCCcceEEec
Q psy9131 8 RSTVGRECCG-KVFVDSAP----EFQPPLSQLV--DFSEVNMILISNYL--SMLALPFITEGTGFEGVVYAT 70 (78)
Q Consensus 8 ~S~~l~e~~~-~~llDcG~----~~~~p~~~~~--~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T 70 (78)
..+||+-.+. ++..|.+- ++-.+..... .-.++++||.||.| |+||+.-|.+..-..-++|..
T Consensus 13 Ny~YLl~~~~~~~~a~~vDP~~pe~v~~~~~~~~~~~~~l~~Il~THhH~DHsGGn~~i~~~~~~~~~v~g~ 84 (265)
T KOG0813|consen 13 NYMYLLGDGDKTIDADLVDPAEPEYVIPSLKKLDDENRRLTAILTTHHHYDHSGGNEDIKREIPYDIKVIGG 84 (265)
T ss_pred ceEEEEecccceeeeeeecCcchHHHHHHHHhhhhccCceeEEEeccccccccCcHHHHHhhccCCcEEecC
Confidence 3456776634 55566562 1111122211 34689999999999 999999999742234666654
No 45
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=93.85 E-value=0.064 Score=39.92 Aligned_cols=71 Identities=20% Similarity=0.215 Sum_probs=42.5
Q ss_pred ccCCeEEEEeCC-eEEEeCcC-----CCCCCCCC-CC------------CCCCccEEEecCCC---Ccchhhhhhh----
Q psy9131 6 MHRSTVGRECCG-KVFVDSAP-----EFQPPLSQ-LV------------DFSEVNMILISNYL---SMLALPFITE---- 59 (78)
Q Consensus 6 V~~S~~l~e~~~-~~llDcG~-----~~~~p~~~-~~------------~~~~iDavliSh~H---H~g~LP~l~~---- 59 (78)
|-.-|.++|+.+ +||+|-|. .+.+|.-+ .+ -..+.|.|.|||+| |.-..|-+++
T Consensus 13 VRSmAt~vet~dv~ILiDpGVsLaPkRy~LPPh~~E~erl~~~r~~i~~~ak~a~VitISHYHYDHhtPf~~~~y~~s~e 92 (304)
T COG2248 13 VRSMATFVETKDVGILIDPGVSLAPKRYGLPPHQRELERLRQAREKIQRYAKKADVITISHYHYDHHTPFFDGIYEASGE 92 (304)
T ss_pred hhhhhheeecCCeeEEECCccccCccccCCCCCHHHHHHHHHHHHHHHHHHhhCCEEEEeeeccccCCccccchhhhccc
Confidence 444578999999 89999995 34444211 01 14678999999999 4332332222
Q ss_pred --ccCCcce-EEechhhhhc
Q psy9131 60 --GTGFEGV-VYATEPTLQI 76 (78)
Q Consensus 60 --~~gf~g~-Iy~T~~T~~l 76 (78)
+.=|+|| +++-+||..+
T Consensus 93 ~~~eiY~gK~lLlKhPte~I 112 (304)
T COG2248 93 TAKEIYKGKLLLLKHPTENI 112 (304)
T ss_pred chHHHhcCcEEEecCchhhh
Confidence 1224555 4456666544
No 46
>KOG2121|consensus
Probab=93.67 E-value=0.01 Score=48.76 Aligned_cols=50 Identities=14% Similarity=0.192 Sum_probs=33.5
Q ss_pred CeEEEEeCC--eEEEeCcC--------CCCCCCCCCCCCCCccEEEecCCC--Ccchhhhhhh
Q psy9131 9 STVGRECCG--KVFVDSAP--------EFQPPLSQLVDFSEVNMILISNYL--SMLALPFITE 59 (78)
Q Consensus 9 S~~l~e~~~--~~llDcG~--------~~~~p~~~~~~~~~iDavliSh~H--H~g~LP~l~~ 59 (78)
|.+++++.. .++||||= .+..-... --..++-||+|||.| |-.||+-+.+
T Consensus 462 SS~lv~i~~~~~IlLDCGEgTlgql~R~YG~~~~~-~~lr~LraI~ISHlHADHh~Gl~~vL~ 523 (746)
T KOG2121|consen 462 SSILVRIDSDDSILLDCGEGTLGQLVRHYGVENVD-TALRKLRAIFISHLHADHHLGLISVLQ 523 (746)
T ss_pred EEEEEeccCCccEEeecCCchHHHHHHHhhhcchH-HHHHhHHHHHHHhhcccccccHHHHHH
Confidence 567888855 48899993 12221111 124788999999999 7777776653
No 47
>KOG1137|consensus
Probab=91.82 E-value=0.24 Score=40.26 Aligned_cols=75 Identities=12% Similarity=0.016 Sum_probs=49.8
Q ss_pred CCCcccCCe-EEEEeCCeEEEeCcC---CCCC-------CCCCC--CCCCCccEEEecCCC--CcchhhhhhhccCCc--
Q psy9131 2 DTERMHRST-VGRECCGKVFVDSAP---EFQP-------PLSQL--VDFSEVNMILISNYL--SMLALPFITEGTGFE-- 64 (78)
Q Consensus 2 ~~~~V~~S~-~l~e~~~~~llDcG~---~~~~-------p~~~~--~~~~~iDavliSh~H--H~g~LP~l~~~~gf~-- 64 (78)
.|++|.|.| +++|+.|-++|+.|- +++. |...+ .=..++-++.+.|.| |-++||.+....--+
T Consensus 157 ~aGhVlgacMf~veiagv~lLyTGd~sreeDrhl~aae~P~~~~dvli~estygv~~h~~r~~re~rlt~vIh~~v~rGG 236 (668)
T KOG1137|consen 157 HAGHVLGACMFMVEIAGVRLLYTGDYSREEDRHLIAAEMPPTGPDVLITESTYGVQIHEPREEREGRLTWVIHSTVPRGG 236 (668)
T ss_pred ccchhhhheeeeeeeceEEEEeccccchhhcccccchhCCCCCccEEEEEeeeeEEecCchHHhhhhhhhhHHhhccCCC
Confidence 489999999 588999989999994 2222 32221 112567778888888 999999887433222
Q ss_pred ---ceEEechhhhhc
Q psy9131 65 ---GVVYATEPTLQI 76 (78)
Q Consensus 65 ---g~Iy~T~~T~~l 76 (78)
-+|||.-.+.+|
T Consensus 237 R~L~PvFAlgrAqEL 251 (668)
T KOG1137|consen 237 RVLIPVFALGRAQEL 251 (668)
T ss_pred ceEeeeeecchHHHH
Confidence 356666555543
No 48
>KOG3798|consensus
Probab=90.42 E-value=0.43 Score=35.82 Aligned_cols=44 Identities=25% Similarity=0.479 Sum_probs=31.5
Q ss_pred ccCCeEEEEeCCeEEEeCc------------C-CCCCCCCCCCCCCCccEEEecCCC
Q psy9131 6 MHRSTVGRECCGKVFVDSA------------P-EFQPPLSQLVDFSEVNMILISNYL 49 (78)
Q Consensus 6 V~~S~~l~e~~~~~llDcG------------~-~~~~p~~~~~~~~~iDavliSh~H 49 (78)
.|-||.++..+|.+++|=- | ++..|....-++.++|.+++||.|
T Consensus 86 lg~a~~~~~~~g~~~~tdpvf~d~~if~s~gPkry~~pp~~~~~~p~~d~~~vsh~h 142 (343)
T KOG3798|consen 86 LGHATVLVDLEGVKFVTDPVWADRASFTSFGPKRYRPPPMKLEDLPDLDFAVVSHDH 142 (343)
T ss_pred hcceeEEEeccCcEEecchhhccchhhcccCcccccCCchhhccCCCCceecccccc
Confidence 4779999999995544432 2 233344445688999999999999
No 49
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=84.18 E-value=1.5 Score=25.57 Aligned_cols=41 Identities=7% Similarity=0.046 Sum_probs=29.3
Q ss_pred CCeEEEEeCC-eEEE-eCcC--CCCCCCCCCCCCCCccEEEecCCC
Q psy9131 8 RSTVGRECCG-KVFV-DSAP--EFQPPLSQLVDFSEVNMILISNYL 49 (78)
Q Consensus 8 ~S~~l~e~~~-~~ll-DcG~--~~~~p~~~~~~~~~iDavliSh~H 49 (78)
+.|+++..++ |.|+ +||= +....+ ..+...+++.|++|+..
T Consensus 12 ~p~l~l~~d~~rYlFGn~gEGtQR~~~e-~~ikl~kl~~IFlT~~~ 56 (63)
T PF13691_consen 12 GPSLLLFFDSRRYLFGNCGEGTQRACNE-HKIKLSKLNDIFLTGLS 56 (63)
T ss_pred CCEEEEEeCCceEEeccCCcHHHHHHHH-cCCCccccceEEECCCC
Confidence 3899999988 5679 8983 111122 23667999999999876
No 50
>KOG3592|consensus
Probab=82.91 E-value=0.52 Score=39.46 Aligned_cols=47 Identities=15% Similarity=0.233 Sum_probs=30.1
Q ss_pred EEEeCC-eEEEeCcCCCCCCCCCCC-CCCCccEEEecCCC--Ccchhhhhh
Q psy9131 12 GRECCG-KVFVDSAPEFQPPLSQLV-DFSEVNMILISNYL--SMLALPFIT 58 (78)
Q Consensus 12 l~e~~~-~~llDcG~~~~~p~~~~~-~~~~iDavliSh~H--H~g~LP~l~ 58 (78)
|..++| .||+|.|.+...+++..+ ....||+|||||.- .++||=-|+
T Consensus 52 LFavnGf~iLv~GgserKS~fwklVrHldrVdaVLLthpg~dNLpginsll 102 (934)
T KOG3592|consen 52 LFAVNGFNILVNGGSERKSCFWKLVRHLDRVDAVLLTHPGADNLPGINSLL 102 (934)
T ss_pred eEeecceEEeecCCcccccchHHHHHHHhhhhhhhhcccccCccccchHHH
Confidence 345677 455666655444444433 56899999999987 666555444
No 51
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=78.66 E-value=0.56 Score=33.30 Aligned_cols=70 Identities=13% Similarity=0.117 Sum_probs=35.6
Q ss_pred CCcccCCeEEEEeCC-eEEEeCcCCCCCCCCCCCCCCCccEEEecCCCCcchhhhhhhccCCcceEEechhhh
Q psy9131 3 TERMHRSTVGRECCG-KVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSMLALPFITEGTGFEGVVYATEPTL 74 (78)
Q Consensus 3 ~~~V~~S~~l~e~~~-~~llDcG~~~~~p~~~~~~~~~iDavliSh~HH~g~LP~l~~~~gf~g~Iy~T~~T~ 74 (78)
++...=.|+++...+ +++||--+....-.........++.|+|||..|+-+---+-+. |..+||.-..-+
T Consensus 18 ~~n~dfng~~~~~p~GnilIDP~~ls~~~~~~l~a~ggv~~IvLTn~dHvR~A~~ya~~--~~a~i~~p~~d~ 88 (199)
T PF14597_consen 18 ARNLDFNGHAWRRPEGNILIDPPPLSAHDWKHLDALGGVAWIVLTNRDHVRAAEDYAEQ--TGAKIYGPAADA 88 (199)
T ss_dssp TTTEEEEEEEE--TT--EEES-----HHHHHHHHHTT--SEEE-SSGGG-TTHHHHHHH--S--EEEEEGGGC
T ss_pred hhccCceeEEEEcCCCCEEecCccccHHHHHHHHhcCCceEEEEeCChhHhHHHHHHHH--hCCeeeccHHHH
Confidence 344555677777755 7889876521100001123478999999999998886666653 779999865543
No 52
>KOG4736|consensus
Probab=77.35 E-value=3.2 Score=31.25 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=24.8
Q ss_pred eEEEeCcCCCCCCCCCCCCCCCccEEEecCCC--Ccchh
Q psy9131 18 KVFVDSAPEFQPPLSQLVDFSEVNMILISNYL--SMLAL 54 (78)
Q Consensus 18 ~~llDcG~~~~~p~~~~~~~~~iDavliSh~H--H~g~L 54 (78)
-+++|-|.- .-.-..+.++.||.|.+||.+ |+|.+
T Consensus 106 v~v~~~gls--~lak~~vt~d~i~~vv~t~~~~~hlgn~ 142 (302)
T KOG4736|consen 106 VVVVDTGLS--VLAKEGVTLDQIDSVVITHKSPGHLGNN 142 (302)
T ss_pred eEEEecCCc--hhhhcCcChhhcceeEEeccCccccccc
Confidence 345777742 111224677999999999999 99988
No 53
>KOG1361|consensus
Probab=76.86 E-value=1.8 Score=34.34 Aligned_cols=34 Identities=12% Similarity=0.316 Sum_probs=26.4
Q ss_pred CCccEEEecCCC--CcchhhhhhhccCCc-ceEEechhhhhc
Q psy9131 38 SEVNMILISNYL--SMLALPFITEGTGFE-GVVYATEPTLQI 76 (78)
Q Consensus 38 ~~iDavliSh~H--H~g~LP~l~~~~gf~-g~Iy~T~~T~~l 76 (78)
.+.-+=++||+| |=.+| . ..|. |++||++-|+.|
T Consensus 111 ~~~s~yFLsHFHSDHy~GL----~-~sW~~p~lYCS~ita~L 147 (481)
T KOG1361|consen 111 EGCSAYFLSHFHSDHYIGL----T-KSWSHPPLYCSPITARL 147 (481)
T ss_pred cccceeeeecccccccccc----c-ccccCCcccccccchhh
Confidence 356788999999 97776 2 3465 789999999876
No 54
>cd07206 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase. Triacylglycerol lipases are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This family includes subfamilies of proteins: TGL3, TGL4, TGL5, and SDP1.
Probab=56.20 E-value=2.1 Score=31.86 Aligned_cols=53 Identities=23% Similarity=0.424 Sum_probs=36.6
Q ss_pred CCeEEEeCcCCCCCCCCCCCCCCCccEEEecCCC-CcchhhhhhhccCCcceEEechhh
Q psy9131 16 CGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYL-SMLALPFITEGTGFEGVVYATEPT 73 (78)
Q Consensus 16 ~~~~llDcG~~~~~p~~~~~~~~~iDavliSh~H-H~g~LP~l~~~~gf~g~Iy~T~~T 73 (78)
+++.++|.|+....|--.....-.+|-+++|+.. |. .|++ +.|.|.|...+..
T Consensus 198 ~g~~~~DGgv~~~iPv~~l~~~~nvn~~Ivsq~np~~--~pf~---q~~~gditI~P~~ 251 (298)
T cd07206 198 PGRKWVDGSVSDDLPAKRLARLYNVNHFIVSQTNPHV--VPFL---QEYSGDITIIPPF 251 (298)
T ss_pred CCCcccCCCcCcchHHHHHHHHcCCCeEEEEcccCcc--ccee---eeccCcEEEeeCc
Confidence 3466788777666664333334567999999999 76 5887 2378999888553
No 55
>cd07202 cPLA2_Grp-IVC Group IVC cytoplasmic phospholipase A2; catalytic domain; Ca-independent. Group IVC cPLA2, a small 61 kDa protein, is a single domain alpha/beta hydrolase. It lacks a C2 domain; therefore, it has no Ca-dependence. Group IVC cPLA2 is also referred to as cPLA2-gamma. The cPLA2-gamma enzyme is predominantly found in cardiac and skeletal muscles, and to a lesser extent in the brain. Human cPLA2-gamma is approximately 30% identical to cPLA2-alpha. The catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms. Movement of the cPLA2 lid possibly exposes a greater hydrophobic surface and the active site. cPLA2 be
Probab=54.57 E-value=14 Score=29.09 Aligned_cols=42 Identities=17% Similarity=0.217 Sum_probs=28.3
Q ss_pred eCCeE-EEeCcCCCCCCCCCCCC-CCCccEEEecCCCCcchhhhhh
Q psy9131 15 CCGKV-FVDSAPEFQPPLSQLVD-FSEVNMILISNYLSMLALPFIT 58 (78)
Q Consensus 15 ~~~~~-llDcG~~~~~p~~~~~~-~~~iDavliSh~HH~g~LP~l~ 58 (78)
.++++ |+|+|+....|.++.+. .++||.||.= .-+.+-||..
T Consensus 280 ~~~~l~L~DaG~~~N~P~~~lLrP~R~VDlIisf--D~Sa~~pf~~ 323 (430)
T cd07202 280 SRETLHLMDAGLAINSPYPLVLPPVRNTDLILSF--DFSEGDPFET 323 (430)
T ss_pred CCCeeEEeecccccCCCcccccCCCCcccEEEEe--ecCCCchhHH
Confidence 34454 89999987778777654 4899998853 3334456654
No 56
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=44.78 E-value=15 Score=22.43 Aligned_cols=41 Identities=20% Similarity=0.223 Sum_probs=29.0
Q ss_pred CCCCCCccEEEecCCCCcchhhhhhhccCCcceEEechhhhhc
Q psy9131 34 LVDFSEVNMILISNYLSMLALPFITEGTGFEGVVYATEPTLQI 76 (78)
Q Consensus 34 ~~~~~~iDavliSh~HH~g~LP~l~~~~gf~g~Iy~T~~T~~l 76 (78)
.++...|+.|+|++.-.-+.-.|.- .++|+.+||+= |++++
T Consensus 8 ~l~~~gv~lv~I~~g~~~~~~~f~~-~~~~p~~ly~D-~~~~l 48 (115)
T PF13911_consen 8 ELEAAGVKLVVIGCGSPEGIEKFCE-LTGFPFPLYVD-PERKL 48 (115)
T ss_pred HHHHcCCeEEEEEcCCHHHHHHHHh-ccCCCCcEEEe-CcHHH
Confidence 3566889999999888534556664 58899999864 34443
No 57
>KOG1138|consensus
Probab=44.01 E-value=34 Score=28.09 Aligned_cols=18 Identities=6% Similarity=-0.025 Sum_probs=14.6
Q ss_pred CCeEEEEeCC-eEEEeCcC
Q psy9131 8 RSTVGRECCG-KVFVDSAP 25 (78)
Q Consensus 8 ~S~~l~e~~~-~~llDcG~ 25 (78)
--|.+++... ||++|||+
T Consensus 12 ~pc~llk~~~~rIllDcpl 30 (653)
T KOG1138|consen 12 YPCKLLKLQRRRILLDCPL 30 (653)
T ss_pred CCchheeccceeEEecCCc
Confidence 3577888877 78899996
No 58
>cd07201 cPLA2_Grp-IVB-IVD-IVE-IVF Group IVB, IVD, IVE, and IVF cytosolic phospholipase A2; catalytic domain; Ca-dependent. Group IVB, IVD, IVE, and IVF cPLA2 consists of two domains: the regulatory C2 domain and alpha/beta hydrolase PLA2 domain. Group IVB, IVD, IVE, and IVF cPLA2 are also referred to as cPLA2-beta, -delta, -epsilon, and -zeta respectively. cPLA2-beta is approximately 30% identical to cPLA2-alpha and it shows low enzymatic activity compared to cPLA2alpha. cPLA2-beta hydrolyzes palmitic acid from 1-[14C]palmitoyl-2-arachidonoyl-PC and arachidonic acid from 1-palmitoyl-2[14C]arachidonoyl-PC, but not from 1-O-alkyl-2[3H]arachidonoyl-PC. cPLA2-delta, -epsilon, and -zeta are approximately 45-50% identical to cPLA2-beta and 31-37% identical to cPLA2-alpha. It's possible that cPLA2-beta, -delta, -epsilon, and -zeta may have arisen by gene duplication from an ancestral gene. The catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bon
Probab=36.63 E-value=34 Score=27.77 Aligned_cols=30 Identities=30% Similarity=0.382 Sum_probs=22.5
Q ss_pred EEEeCcCCCCCCCCCCCCC-CCccEEEecCC
Q psy9131 19 VFVDSAPEFQPPLSQLVDF-SEVNMILISNY 48 (78)
Q Consensus 19 ~llDcG~~~~~p~~~~~~~-~~iDavliSh~ 48 (78)
.|+|.|+....|.++.+.| ++||.||-=.+
T Consensus 374 ~lvDag~~~N~p~ppllrP~R~VDlIisfd~ 404 (541)
T cd07201 374 CLVDTAFFINTSYPPLLRPERKVDVILSLNY 404 (541)
T ss_pred eeeecccccCCCCCcccCCCCcccEEEEecc
Confidence 3899999877887776654 88998884443
No 59
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=35.74 E-value=18 Score=29.57 Aligned_cols=23 Identities=9% Similarity=-0.012 Sum_probs=19.3
Q ss_pred CCCccEEEecCCC--Ccchhhhhhh
Q psy9131 37 FSEVNMILISNYL--SMLALPFITE 59 (78)
Q Consensus 37 ~~~iDavliSh~H--H~g~LP~l~~ 59 (78)
-..|-+|+-||+| |.|++-=+++
T Consensus 162 ~rPV~aVIYtHsH~DHfGGVkGiv~ 186 (655)
T COG2015 162 QRPVVAVIYTHSHSDHFGGVKGIVS 186 (655)
T ss_pred CCCeEEEEeecccccccCCeeeccC
Confidence 4668999999999 9999876664
No 60
>PHA02700 ORF017 DNA-binding phosphoprotein; Provisional
Probab=31.60 E-value=57 Score=21.01 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=17.1
Q ss_pred CCCCcccCCeEEEEeCC--eEE
Q psy9131 1 MDTERMHRSTVGRECCG--KVF 20 (78)
Q Consensus 1 ~~~~~V~~S~~l~e~~~--~~l 20 (78)
|.++.|.++-|++..+| ++|
T Consensus 1 ~~~~~v~~~PFiint~geGr~L 22 (106)
T PHA02700 1 MEAGGVHKRPFIVNVEGQGRVL 22 (106)
T ss_pred CCCCccccCCeEEeecCcceEE
Confidence 78899999999999985 654
No 61
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=29.78 E-value=22 Score=27.15 Aligned_cols=36 Identities=17% Similarity=0.260 Sum_probs=25.4
Q ss_pred CCccEEEecCCC--Ccchh----hhhhhccCCcceEEechhhhh
Q psy9131 38 SEVNMILISNYL--SMLAL----PFITEGTGFEGVVYATEPTLQ 75 (78)
Q Consensus 38 ~~iDavliSh~H--H~g~L----P~l~~~~gf~g~Iy~T~~T~~ 75 (78)
..|.--+|||+| |+.|| |-..++ =+-.||..+-|.+
T Consensus 111 Q~I~~y~ITH~HLDHIsGlVinSp~~~~q--kkkTI~gl~~tID 152 (356)
T COG5212 111 QSINSYFITHAHLDHISGLVINSPDDSKQ--KKKTIYGLADTID 152 (356)
T ss_pred hhhhheEeccccccchhceeecCcccccc--CCceEEechhHHH
Confidence 568889999999 88776 444542 1356888776654
No 62
>cd00147 cPLA2_like Cytosolic phospholipase A2, catalytic domain; hydrolyses arachidonyl phospholipids. Catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms. Movement of the cPLA2 lid possibly exposes a greater hydrophobic surface and the active site. cPLA2 belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Calcium is required for cPLA2 to bind with membranes or phospholipids. Group IV cPLA2 includes six intercellular enzymes: cPLA2alpha, cPLA2beta, cPLA2gamma, cPLA2delta, cP
Probab=28.32 E-value=62 Score=25.43 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=20.8
Q ss_pred EEEeCcCCCC-CCCCCCC-CCCCccEEEe
Q psy9131 19 VFVDSAPEFQ-PPLSQLV-DFSEVNMILI 45 (78)
Q Consensus 19 ~llDcG~~~~-~p~~~~~-~~~~iDavli 45 (78)
.|+|.|...+ .|..+.+ ..+++|+|+.
T Consensus 290 ~LvDgG~d~qniPl~pLL~p~R~VDvI~a 318 (438)
T cd00147 290 HLVDAGLDINNIPLPPLLRPERDVDVILS 318 (438)
T ss_pred EEeccccccCCCCCccccCCCCCccEEEE
Confidence 3799998655 6776654 5699999997
No 63
>TIGR03688 pupylate_PafA2 proteasome accessory factor PafA2. This protein family is paralogous to (and distinct from) the PafA (proteasome accessory factor) first described in Mycobacterium tuberculosis (see TIGR03686). Members of both this family and TIGR03686 itself tend to cluster with each other, with the ubiquitin analog Pup (TIGR03687) associated with targeting to the proteasome, and with proteasome subunits themselves.
Probab=27.01 E-value=53 Score=26.35 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=21.5
Q ss_pred CCcccCCeEEEEeCCeEEEeCc--CCCCCCCC
Q psy9131 3 TERMHRSTVGRECCGKVFVDSA--PEFQPPLS 32 (78)
Q Consensus 3 ~~~V~~S~~l~e~~~~~llDcG--~~~~~p~~ 32 (78)
..+.+.|-.++..++|+++| | |+++.|+-
T Consensus 75 ~~~~~~sNv~L~NGaRlYvD-haHPEYstpEc 105 (485)
T TIGR03688 75 PHALGVANVILTNGARFYVD-HAHPEYSSPEV 105 (485)
T ss_pred cccccccceeecCCceEecc-CCCccccCccc
Confidence 34666777888878899999 7 67776664
No 64
>cd07210 Pat_hypo_W_succinogenes_WS1459_like Hypothetical patatin similar to WS1459 of Wolinella succinogenes. Patatin-like phospholipase. This family predominantly consists of bacterial patatin glycoproteins. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=26.81 E-value=51 Score=22.90 Aligned_cols=35 Identities=29% Similarity=0.374 Sum_probs=24.3
Q ss_pred EEeCCeEEEeCcCCCCCCCCCCCCCCCccEEEecCCC
Q psy9131 13 RECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYL 49 (78)
Q Consensus 13 ~e~~~~~llDcG~~~~~p~~~~~~~~~iDavliSh~H 49 (78)
++++|+.++|.|+....|..... ...|.|++-+..
T Consensus 141 v~i~g~~~vDGGv~~n~Pi~~~~--~~~~~ii~v~~~ 175 (221)
T cd07210 141 VEIGGRPFVDGGVADRLPFDALR--PEIERILYHHVA 175 (221)
T ss_pred EEECCEEEEeccccccccHHHHh--cCCCEEEEEECC
Confidence 45788899999986556654433 346777777766
No 65
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=26.73 E-value=59 Score=21.94 Aligned_cols=16 Identities=31% Similarity=0.422 Sum_probs=10.7
Q ss_pred eE-EEeCcCCCCCCCCC
Q psy9131 18 KV-FVDSAPEFQPPLSQ 33 (78)
Q Consensus 18 ~~-llDcG~~~~~p~~~ 33 (78)
+| +||.|.....|++.
T Consensus 6 ~VaiiDsG~~~~h~~l~ 22 (267)
T cd04848 6 KVGVIDSGIDLSHPEFA 22 (267)
T ss_pred EEEEEeCCCCCCCcccc
Confidence 45 69999865555543
No 66
>PF07684 NODP: NOTCH protein; InterPro: IPR011656 NOTCH signalling plays a fundamental role during a great number of developmental processes in multicellular animals []. NOD and NODP represent a region present in many NOTCH proteins and NOTCH homologs in multiple species such as NOTCH2 and NOTCH3, LIN12, SC1 and TAN1. The role of the NOD and NODP domains remains to be elucidated.; GO: 0007219 Notch signaling pathway, 0007275 multicellular organismal development, 0030154 cell differentiation, 0016021 integral to membrane; PDB: 3ETO_A 3I08_D 3L95_X 2OO4_A.
Probab=23.99 E-value=34 Score=19.77 Aligned_cols=15 Identities=20% Similarity=-0.022 Sum_probs=11.3
Q ss_pred cccCCeEEEEeCCeE
Q psy9131 5 RMHRSTVGRECCGKV 19 (78)
Q Consensus 5 ~V~~S~~l~e~~~~~ 19 (78)
||.||-+++|++++.
T Consensus 1 e~~Gs~V~LeiDnr~ 15 (63)
T PF07684_consen 1 EVIGSVVYLEIDNRK 15 (63)
T ss_dssp STCEEEEEEEEE-TT
T ss_pred CceeEEEEEEEEhhh
Confidence 678899999998743
No 67
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=22.39 E-value=51 Score=23.08 Aligned_cols=19 Identities=11% Similarity=0.186 Sum_probs=15.1
Q ss_pred CccEEEecCCC--Ccchhhhhhhc
Q psy9131 39 EVNMILISNYL--SMLALPFITEG 60 (78)
Q Consensus 39 ~iDavliSh~H--H~g~LP~l~~~ 60 (78)
..|.| |+| |.+.+|.+++.
T Consensus 133 ~pDII---H~hDW~tal~p~~lk~ 153 (245)
T PF08323_consen 133 KPDII---HCHDWHTALAPLYLKE 153 (245)
T ss_dssp S-SEE---EEECGGGTTHHHHHHH
T ss_pred CCCEE---EecCchHHHHHHHhcc
Confidence 56766 899 99999999964
Done!