RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9131
(78 letters)
>gnl|CDD|224157 COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold
involved in RNA processing [Translation, ribosomal
structure and biogenesis].
Length = 427
Score = 29.3 bits (66), Expect = 0.16
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 20/86 (23%)
Query: 8 RSTVGREC-------------CGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLS--ML 52
VGR C CG D +PE PL L F +V+ +L+++ +
Sbjct: 9 AREVGRSCVLLETGGTRILLDCGLFPGDPSPER--PL--LPPFPKVDAVLLTHAHLDHIG 64
Query: 53 ALPFITEGTGFEGVVYATEPTLQIGK 78
ALP++ GFEG VYAT PT + K
Sbjct: 65 ALPYLVR-NGFEGPVYATPPTAALLK 89
>gnl|CDD|199852 cd03871, M14_CPB, Peptidase M14 carboxypeptidase subfamily
A/B-like; Carboxypeptidase B subgroup. Peptidase M14
Carboxypeptidase B (CPB) belongs to the carboxypeptidase
A/B subfamily of the M14 family of
metallocarboxypeptidases (MCPs). The M14 family are
zinc-binding CPs which hydrolyze single, C-terminal
amino acids from polypeptide chains, and have a
recognition site for the free C-terminal carboxyl group,
which is a key determinant of specificity.
Carboxypeptidase B (CPB) enzymes only cleave the basic
residues lysine or arginine. A/B subfamily enzymes are
normally synthesized as inactive precursors containing
preceding signal peptide, followed by a globular
N-terminal pro-region linked to the enzyme; these
proenzymes are called procarboxypeptidases. The
procarboxypeptidase B (PCPB) is produced by the exocrine
pancreas and stored as stable zymogen in the pancreatic
granules until secretion into the digestive tract
occurs. PCPB has been reported to be a good serum marker
for the diagnosis of acute pancreatitis and graft
rejection in pancreas transplant recipients.
Length = 300
Score = 26.3 bits (58), Expect = 1.4
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 10 TVG--RECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLS------MLALPF 56
TVG R C + + SAPE + L DF N+ I YL+ ML P+
Sbjct: 147 TVGASRNPCDETYCGSAPESEKETKALADFIRNNLSSIKAYLTIHSYSQMLLYPY 201
>gnl|CDD|188365 TIGR03675, arCOG00543, arCOG00543 universal archaeal
KH-domain/beta-lactamase-domain protein. This family of
proteins is universal in the archaea and consistsof an
N-terminal type-1 KH-domain (pfam00013) a central
beta-lactamase-domain (pfam00753) with a C-terminal
motif associated with RNA metabolism (pfam07521).
KH-domains are associated with RNA-binding, so taken
together, this protein is a likely metal-dependent
RNAase. This family was defined in as arCOG01782.
Length = 630
Score = 25.7 bits (57), Expect = 3.1
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 62 GFEGVVYATEPTLQI 76
G++G VY T PT +
Sbjct: 252 GYDGPVYCTPPTRDL 266
>gnl|CDD|227623 COG5307, COG5307, SEC7 domain proteins [General function prediction
only].
Length = 1024
Score = 25.5 bits (56), Expect = 3.3
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 28 QPPLSQLVDFSEVNMILISNYLSMLALPF 56
PPL + VD S+ N+ +I + + + F
Sbjct: 686 SPPLQKEVDISKKNVDIIKSESKISNVLF 714
>gnl|CDD|182876 PRK10974, PRK10974, glycerol-3-phosphate transporter periplasmic
binding protein; Provisional.
Length = 438
Score = 25.1 bits (55), Expect = 3.8
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 43 ILISNYLSMLALPFITEGTGFEGVVYATEPTLQIGK 78
I + N+ + LPF ++ GF+G T+ L+ K
Sbjct: 197 IQLENFSAWHGLPFASKNNGFDG----TDAVLEFNK 228
>gnl|CDD|238751 cd01474, vWA_ATR, ATR (Anthrax Toxin Receptor): Anthrax toxin is
a key virulence factor for Bacillus anthracis, the
causative agent of anthrax. ATR is the cellular
receptor for the anthrax protective antigen and
facilitates entry of the toxin into cells. The VWA
domain in ATR contains the toxin binding site and
mediates interaction with protective antigen. The
binding is mediated by divalent cations that binds to
the MIDAS motif. These proteins are a family of
vertebrate ECM receptors expressed by endothelial
cells.
Length = 185
Score = 24.8 bits (54), Expect = 4.7
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 41 NMILISNYLSMLALPFITEGTGFEGVVYATEPTLQIG 77
N I I +++ L F + G F + ++T T +
Sbjct: 20 NWIEIYDFVEQLVDRFNSPGLRFSFITFSTRATKILP 56
>gnl|CDD|224696 COG1782, COG1782, Predicted metal-dependent RNase, consists of a
metallo-beta-lactamase domain and an RNA-binding KH
domain [General function prediction only].
Length = 637
Score = 24.6 bits (54), Expect = 5.7
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 62 GFEGVVYATEPT 73
G++G VY T PT
Sbjct: 258 GYDGPVYCTPPT 269
>gnl|CDD|227297 COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF
[Intracellular trafficking and secretion].
Length = 355
Score = 24.2 bits (53), Expect = 7.7
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 28 QPPLSQLVDFSEVNMIL-ISNYLSMLALPFITEGTGFEGVVYATEPTLQIGK 78
Q Q+ S V++I+ I+ + I E TG EG VY T+ +
Sbjct: 302 QTIRRQIA--SAVDVIVQIARLGDGRRITEIAEVTGMEGGVYVTQDIFEFDP 351
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.403
Gapped
Lambda K H
0.267 0.0693 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,808,891
Number of extensions: 285171
Number of successful extensions: 224
Number of sequences better than 10.0: 1
Number of HSP's gapped: 224
Number of HSP's successfully gapped: 13
Length of query: 78
Length of database: 10,937,602
Length adjustment: 47
Effective length of query: 31
Effective length of database: 8,852,964
Effective search space: 274441884
Effective search space used: 274441884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.3 bits)