RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9131
         (78 letters)



>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation
          specificity factor subunit 3 {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 451

 Score = 35.9 bits (81), Expect = 1e-04
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 16 CGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLS--MLALPFITEGTGFEGVVYATEPT 73
          CG +          P   L+D +E++++LIS++      ALP+  + T F+G  + T  T
Sbjct: 33 CG-IHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHAT 91

Query: 74 LQ 75
            
Sbjct: 92 KA 93


>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two
          protein 2, CFT2 {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 514

 Score = 31.7 bits (71), Expect = 0.005
 Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 11/68 (16%)

Query: 17 GKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLS--MLALPFI----TEGTGFEGVVYAT 70
           KV  +   ++           E+++I++S      + A   +    T        VYAT
Sbjct: 36 SKVSYEQCIKYWE-----KVIPEIDVIILSQPTIECLGAHSLLYYNFTSHFISRIQVYAT 90

Query: 71 EPTLQIGK 78
           P + +G+
Sbjct: 91 LPVINLGR 98


>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP)
          {Great pond snail (Lymnaea stagnalis) [TaxId: 6523]}
          Length = 208

 Score = 25.5 bits (55), Expect = 0.73
 Identities = 1/17 (5%), Positives = 7/17 (41%)

Query: 31 LSQLVDFSEVNMILISN 47
             +++ +E+   +   
Sbjct: 36 FINILEVNEITNEVDVV 52


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.403 

Gapped
Lambda     K      H
   0.267   0.0485    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 264,452
Number of extensions: 9164
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 3
Length of query: 78
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 33
Effective length of database: 1,789,746
Effective search space: 59061618
Effective search space used: 59061618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.5 bits)