BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9135
(1107 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1C0F|A Chain A, Crystal Structure Of Dictyostelium Caatp-Actin In Complex
With Gelsolin Segment 1
Length = 368
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 91/386 (23%), Positives = 153/386 (39%), Gaps = 72/386 (18%)
Query: 738 GVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDP-HTNKLRNLYEYKDADDLYGLLI----- 791
+V+D GS K G G P+ S V P HT K + Y +A G+L
Sbjct: 7 ALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGK--DSYVGDEAQSKRGILTLKYPI 64
Query: 792 --------EFIRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLS 839
+ + KI F+ +P++ +++ E+ L P R + +++F+ + +
Sbjct: 65 EXGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPA 124
Query: 840 LLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIR 899
+ ++SL G TG+V+D G + +P+YEG + A L L G R
Sbjct: 125 MYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAG--------R 176
Query: 900 SLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIK-----VCSCFVTTMERSAEIAAKNP 954
L +K L T + E I+ DIK V F M+ +A +A
Sbjct: 177 DLTDYMMKILTERGYSFTTTAERE-----IVRDIKEKLAYVALDFEAEMQTAASSSALEK 231
Query: 955 DHKYPSGFMYPLKNGK-KIP-----------VSGHIRETAFEVLFELDLDMLNIATIILD 1002
++ P G + + N + + P S I ET + + + D+D I D
Sbjct: 232 SYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVD------IRKD 285
Query: 1003 SLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKEN 1062
+V S G T FP + R ++L L + + IK P +
Sbjct: 286 LYGNVVLSGG---TTMFP---GIADRMNKELTALAPST------MKIKIIA----PPERK 329
Query: 1063 YVAWLGGAIFAATESYNKRAIQKDVY 1088
Y W+GG+I A+ ++ + I K+ Y
Sbjct: 330 YSVWIGGSILASLSTFQQMWISKEEY 355
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 88/396 (22%), Positives = 157/396 (39%), Gaps = 81/396 (20%)
Query: 43 KGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDP-HTNKLRNLYEYKDADDLYGLLI---- 97
+ +V+D GS K G G P+ S V P HT K + Y +A G+L
Sbjct: 6 QALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGK--DSYVGDEAQSKRGILTLKYP 63
Query: 98 ---------EFIRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVL 144
+ + KI F+ +P++ +++ E+ L P R + +++F+ +
Sbjct: 64 IEXGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP 123
Query: 145 SLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHI- 203
++ ++SL G TG+V+D G + +P+YEG + A L L G+ + ++
Sbjct: 124 AMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYMM 183
Query: 204 ----RRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTME 259
RG S + ++ +IK E L+ V F M+
Sbjct: 184 KILTERGYSFTTTAEREIVRDIK---------------EKLA-------YVALDFEAEMQ 221
Query: 260 RSAEIAAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETAFEVLFELDLD 307
+A +A ++ P G + + N + + P S I ET + + + D+D
Sbjct: 222 TAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVD 281
Query: 308 MLNIATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNF 367
I D +V S G T FP + R ++L L + + IK
Sbjct: 282 ------IRKDLYGNVVLSGG---TTMFP---GIADRMNKELTALAPST------MKIKII 323
Query: 368 KFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVY 403
P + Y W+GG+I A+ ++ + I K+ Y
Sbjct: 324 A----PPERKYSVWIGGSILASLSTFQQMWISKEEY 355
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
Query: 436 GHIRETAFEVLFE---LDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLK 492
G+ R E LF+ L ++ I +S++K D++K L N++L+GGT M PG+
Sbjct: 244 GNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIA 303
Query: 493 YRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDA 552
R+ +EL L S + IK P + Y W+GG+I A+ ++ + I K+
Sbjct: 304 DRMNKELTALAPS-----TMKIKIIA----PPERKYSVWIGGSILASLSTFQQMWISKEE 354
Query: 553 Y 553
Y
Sbjct: 355 Y 355
>pdb|4EFH|A Chain A, Acanthamoeba Actin Complex With Spir Domain D
Length = 375
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 91/391 (23%), Positives = 152/391 (38%), Gaps = 75/391 (19%)
Query: 738 GVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDP-HTNKL-----RNLYEYKDADDLYGLLI 791
+V+D GS K G G P+ S V P HT + ++ Y +A G+L
Sbjct: 7 ALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRGILT 66
Query: 792 -------------EFIRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKH 834
+ + KI F+ +P++ +++ E+ L P R + +++F+
Sbjct: 67 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 126
Query: 835 YEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSV 894
+ ++ ++SL G TG+VLD G +P+YEG + A L L G
Sbjct: 127 FNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAG---- 182
Query: 895 ESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT-----TMERSAEI 949
R L +K L T + E I+ DIK C+V M +A
Sbjct: 183 ----RDLTDYLMKILTERGYSFTTTAERE-----IVRDIKEKLCYVALDFEQEMHTAASS 233
Query: 950 AAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETAFEVLFELDLDMLNIA 997
+A ++ P G + + N + + P S I ET + + + D+D
Sbjct: 234 SALEKSYELPDGQVITIGNERFRAPEALFQPSFLGMESAGIHETTYNSIMKCDVD----- 288
Query: 998 TIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEF 1057
I D +V S G T FP + R ++L L + IK
Sbjct: 289 -IRKDLYGNVVLSGG---TTMFP---GIADRMQKELTAL------APSTMKIKIIA---- 331
Query: 1058 PAKENYVAWLGGAIFAATESYNKRAIQKDVY 1088
P + Y W+GG+I A+ ++ + I K+ Y
Sbjct: 332 PPERKYSVWIGGSILASLSTFQQMWISKEEY 362
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 89/401 (22%), Positives = 155/401 (38%), Gaps = 84/401 (20%)
Query: 43 KGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDP-HTNKL-----RNLYEYKDADDLYGLL 96
+ +V+D GS K G G P+ S V P HT + ++ Y +A G+L
Sbjct: 6 QALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRGIL 65
Query: 97 I-------------EFIRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFK 139
+ + KI F+ +P++ +++ E+ L P R + +++F+
Sbjct: 66 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 125
Query: 140 HYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSV 199
+ ++ ++SL G TG+VLD G +P+YEG + A L L G+ +
Sbjct: 126 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDL 185
Query: 200 EAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT--- 256
++ +K L T + E I+ DIK C+V
Sbjct: 186 TDYL-----------------MKILTERGYSFTTTAERE-----IVRDIKEKLCYVALDF 223
Query: 257 --TMERSAEIAAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETAFEVLF 302
M +A +A ++ P G + + N + + P S I ET + +
Sbjct: 224 EQEMHTAASSSALEKSYELPDGQVITIGNERFRAPEALFQPSFLGMESAGIHETTYNSIM 283
Query: 303 ELDLDMLNIATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKL 362
+ D+D I D +V S G T FP + R ++L L +
Sbjct: 284 KCDVD------IRKDLYGNVVLSGG---TTMFP---GIADRMQKELTAL------APSTM 325
Query: 363 FIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVY 403
IK P + Y W+GG+I A+ ++ + I K+ Y
Sbjct: 326 KIKIIA----PPERKYSVWIGGSILASLSTFQQMWISKEEY 362
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 12/121 (9%)
Query: 436 GHIRETAFEVLFE---LDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLK 492
G+ R A E LF+ L ++ I +S++K D++K L N++L+GGT M PG+
Sbjct: 251 GNERFRAPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIA 310
Query: 493 YRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDA 552
R+ +EL L S + IK P + Y W+GG+I A+ ++ + I K+
Sbjct: 311 DRMQKELTALAPS-----TMKIKIIA----PPERKYSVWIGGSILASLSTFQQMWISKEE 361
Query: 553 Y 553
Y
Sbjct: 362 Y 362
>pdb|3A5M|C Chain C, Crystal Structure Of A Dictyostelium P109i Mg2+-Actin In
Complex With Human Gelsolin Segment 1
pdb|3A5O|C Chain C, Crystal Structure Of A Dictyostelium P109i Ca2+-Actin In
Complex With Human Gelsolin Segment 1
Length = 375
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 88/391 (22%), Positives = 154/391 (39%), Gaps = 75/391 (19%)
Query: 738 GVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDP-HTNKL-----RNLYEYKDADDLYGLLI 791
+V+D GS K G G P+ S V P HT + ++ Y +A G+L
Sbjct: 7 ALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRGILT 66
Query: 792 -------------EFIRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKH 834
+ + KI F+ +P++ +++ E++L P R + +++F+
Sbjct: 67 LKYPIEXGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAILNPKANREKMTQIMFET 126
Query: 835 YEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSV 894
+ ++ ++SL G TG+V+D G + +P+YEG + A L L G
Sbjct: 127 FNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRD-- 184
Query: 895 ESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIK-----VCSCFVTTMERSAEI 949
L D + + Y T + +I+ DIK V F M+ +A
Sbjct: 185 -------LTDYMMKILTERGYSFTT----TAAAAIVRDIKEKLAYVALDFEAEMQTAASS 233
Query: 950 AAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETAFEVLFELDLDMLNIA 997
+A ++ P G + + N + + P S I ET + + + D+D
Sbjct: 234 SALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVD----- 288
Query: 998 TIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEF 1057
I D +V S G T FP + R ++L L + IK
Sbjct: 289 -IRKDLYGNVVLSGG---TTMFP---GIADRMNKELTAL------APSTMKIKIIA---- 331
Query: 1058 PAKENYVAWLGGAIFAATESYNKRAIQKDVY 1088
P + Y W+GG+I A+ ++ + I K+ Y
Sbjct: 332 PPERKYSVWIGGSILASLSTFQQMWISKEEY 362
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 87/401 (21%), Positives = 159/401 (39%), Gaps = 84/401 (20%)
Query: 43 KGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDP-HTNKL-----RNLYEYKDADDLYGLL 96
+ +V+D GS K G G P+ S V P HT + ++ Y +A G+L
Sbjct: 6 QALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRGIL 65
Query: 97 I-------------EFIRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFK 139
+ + KI F+ +P++ +++ E++L P R + +++F+
Sbjct: 66 TLKYPIEXGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAILNPKANREKMTQIMFE 125
Query: 140 HYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSV 199
+ ++ ++SL G TG+V+D G + +P+YEG + A L L G+ +
Sbjct: 126 TFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 185
Query: 200 EAHI-----RRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCF 254
++ RG S + + ++ +IK E L+ V F
Sbjct: 186 TDYMMKILTERGYSFTTTAAAAIVRDIK---------------EKLA-------YVALDF 223
Query: 255 VTTMERSAEIAAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETAFEVLF 302
M+ +A +A ++ P G + + N + + P S I ET + +
Sbjct: 224 EAEMQTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIM 283
Query: 303 ELDLDMLNIATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKL 362
+ D+D I D +V S G T FP + R ++L L +
Sbjct: 284 KCDVD------IRKDLYGNVVLSGG---TTMFP---GIADRMNKELTAL------APSTM 325
Query: 363 FIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVY 403
IK P + Y W+GG+I A+ ++ + I K+ Y
Sbjct: 326 KIKIIA----PPERKYSVWIGGSILASLSTFQQMWISKEEY 362
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
Query: 436 GHIRETAFEVLFE---LDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLK 492
G+ R E LF+ L ++ I +S++K D++K L N++L+GGT M PG+
Sbjct: 251 GNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIA 310
Query: 493 YRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDA 552
R+ +EL L S K K+ P + Y W+GG+I A+ ++ + I K+
Sbjct: 311 DRMNKELTALAPS-TMKIKIIA--------PPERKYSVWIGGSILASLSTFQQMWISKEE 361
Query: 553 Y 553
Y
Sbjct: 362 Y 362
>pdb|3A5L|C Chain C, Crystal Structure Of A Dictyostelium P109a Mg2+-Actin In
Complex With Human Gelsolin Segment 1
pdb|3A5N|C Chain C, Crystal Structure Of A Dictyostelium P109a Ca2+-Actin In
Complex With Human Gelsolin Segment 1
Length = 375
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 88/391 (22%), Positives = 153/391 (39%), Gaps = 75/391 (19%)
Query: 738 GVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDP-HTNKL-----RNLYEYKDADDLYGLLI 791
+V+D GS K G G P+ S V P HT + ++ Y +A G+L
Sbjct: 7 ALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRGILT 66
Query: 792 -------------EFIRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKH 834
+ + KI F+ +P++ +++ E+ L P R + +++F+
Sbjct: 67 LKYPIEXGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAALNPKANREKMTQIMFET 126
Query: 835 YEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSV 894
+ ++ ++SL G TG+V+D G + +P+YEG + A L L G
Sbjct: 127 FNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRD-- 184
Query: 895 ESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIK-----VCSCFVTTMERSAEI 949
L D + + Y T + +I+ DIK V F M+ +A
Sbjct: 185 -------LTDYMMKILTERGYSFTT----TAAAAIVRDIKEKLAYVALDFEAEMQTAASS 233
Query: 950 AAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETAFEVLFELDLDMLNIA 997
+A ++ P G + + N + + P S I ET + + + D+D
Sbjct: 234 SALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVD----- 288
Query: 998 TIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEF 1057
I D +V S G T FP + R ++L L + IK
Sbjct: 289 -IRKDLYGNVVLSGG---TTMFP---GIADRMNKELTAL------APSTMKIKIIA---- 331
Query: 1058 PAKENYVAWLGGAIFAATESYNKRAIQKDVY 1088
P + Y W+GG+I A+ ++ + I K+ Y
Sbjct: 332 PPERKYSVWIGGSILASLSTFQQMWISKEEY 362
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 87/401 (21%), Positives = 158/401 (39%), Gaps = 84/401 (20%)
Query: 43 KGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDP-HTNKL-----RNLYEYKDADDLYGLL 96
+ +V+D GS K G G P+ S V P HT + ++ Y +A G+L
Sbjct: 6 QALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRGIL 65
Query: 97 I-------------EFIRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFK 139
+ + KI F+ +P++ +++ E+ L P R + +++F+
Sbjct: 66 TLKYPIEXGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAALNPKANREKMTQIMFE 125
Query: 140 HYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSV 199
+ ++ ++SL G TG+V+D G + +P+YEG + A L L G+ +
Sbjct: 126 TFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 185
Query: 200 EAHI-----RRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCF 254
++ RG S + + ++ +IK E L+ V F
Sbjct: 186 TDYMMKILTERGYSFTTTAAAAIVRDIK---------------EKLA-------YVALDF 223
Query: 255 VTTMERSAEIAAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETAFEVLF 302
M+ +A +A ++ P G + + N + + P S I ET + +
Sbjct: 224 EAEMQTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIM 283
Query: 303 ELDLDMLNIATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKL 362
+ D+D I D +V S G T FP + R ++L L +
Sbjct: 284 KCDVD------IRKDLYGNVVLSGG---TTMFP---GIADRMNKELTAL------APSTM 325
Query: 363 FIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVY 403
IK P + Y W+GG+I A+ ++ + I K+ Y
Sbjct: 326 KIKIIA----PPERKYSVWIGGSILASLSTFQQMWISKEEY 362
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
Query: 436 GHIRETAFEVLFE---LDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLK 492
G+ R E LF+ L ++ I +S++K D++K L N++L+GGT M PG+
Sbjct: 251 GNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIA 310
Query: 493 YRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDA 552
R+ +EL L S K K+ P + Y W+GG+I A+ ++ + I K+
Sbjct: 311 DRMNKELTALAPS-TMKIKIIA--------PPERKYSVWIGGSILASLSTFQQMWISKEE 361
Query: 553 Y 553
Y
Sbjct: 362 Y 362
>pdb|3CHW|A Chain A, Complex Of Dictyostelium Discoideum Actin With Profilin And
The Last Poly-Pro Of Human Vasp
pdb|3CIP|A Chain A, Complex Of Dictyostelium Discoideum Actin With Gelsolin
Length = 375
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 90/391 (23%), Positives = 153/391 (39%), Gaps = 75/391 (19%)
Query: 738 GVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDP-HTNKL-----RNLYEYKDADDLYGLLI 791
+V+D GS K G G P+ S V P HT + ++ Y +A G+L
Sbjct: 7 ALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRGILT 66
Query: 792 -------------EFIRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKH 834
+ + KI F+ +P++ +++ E+ L P R + +++F+
Sbjct: 67 LKYPIEXGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 126
Query: 835 YEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSV 894
+ ++ ++SL G TG+V+D G + +P+YEG + A L L G
Sbjct: 127 FNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAG---- 182
Query: 895 ESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIK-----VCSCFVTTMERSAEI 949
R L +K L T + E I+ DIK V F M+ +A
Sbjct: 183 ----RDLTDYMMKILTERGYSFTTTAERE-----IVRDIKEKLAYVALDFEAEMQTAASS 233
Query: 950 AAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETAFEVLFELDLDMLNIA 997
+A ++ P G + + N + + P S I ET + + + D+D
Sbjct: 234 SALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVD----- 288
Query: 998 TIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEF 1057
I D +V S G T FP + R ++L L + IK
Sbjct: 289 -IRKDLYGNVVLSGG---TTMFP---GIADRMNKELTAL------APSTMKIKIIA---- 331
Query: 1058 PAKENYVAWLGGAIFAATESYNKRAIQKDVY 1088
P + Y W+GG+I A+ ++ + I K+ Y
Sbjct: 332 PPERKYSVWIGGSILASLSTFQQMWISKEEY 362
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 87/401 (21%), Positives = 157/401 (39%), Gaps = 84/401 (20%)
Query: 43 KGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDP-HTNKL-----RNLYEYKDADDLYGLL 96
+ +V+D GS K G G P+ S V P HT + ++ Y +A G+L
Sbjct: 6 QALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRGIL 65
Query: 97 I-------------EFIRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFK 139
+ + KI F+ +P++ +++ E+ L P R + +++F+
Sbjct: 66 TLKYPIEXGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 125
Query: 140 HYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSV 199
+ ++ ++SL G TG+V+D G + +P+YEG + A L L G+ +
Sbjct: 126 TFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 185
Query: 200 EAHI-----RRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCF 254
++ RG S + ++ +IK E L+ V F
Sbjct: 186 TDYMMKILTERGYSFTTTAEREIVRDIK---------------EKLA-------YVALDF 223
Query: 255 VTTMERSAEIAAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETAFEVLF 302
M+ +A +A ++ P G + + N + + P S I ET + +
Sbjct: 224 EAEMQTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIM 283
Query: 303 ELDLDMLNIATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKL 362
+ D+D I D +V S G T FP + R ++L L +
Sbjct: 284 KCDVD------IRKDLYGNVVLSGG---TTMFP---GIADRMNKELTAL------APSTM 325
Query: 363 FIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVY 403
IK P + Y W+GG+I A+ ++ + I K+ Y
Sbjct: 326 KIKIIA----PPERKYSVWIGGSILASLSTFQQMWISKEEY 362
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
Query: 436 GHIRETAFEVLFE---LDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLK 492
G+ R E LF+ L ++ I +S++K D++K L N++L+GGT M PG+
Sbjct: 251 GNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIA 310
Query: 493 YRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDA 552
R+ +EL L S K K+ P + Y W+GG+I A+ ++ + I K+
Sbjct: 311 DRMNKELTALAPS-TMKIKIIA--------PPERKYSVWIGGSILASLSTFQQMWISKEE 361
Query: 553 Y 553
Y
Sbjct: 362 Y 362
>pdb|1NLV|A Chain A, Crystal Structure Of Dictyostelium Discoideum Actin
Complexed With Ca Atp And Human Gelsolin Segment 1
pdb|1NM1|A Chain A, Crystal Structure Of D. Dicsoideum Actin Complexed With
Gelsolin Segment 1 And Mg Atp At 1.8 A Resolution
pdb|1NMD|A Chain A, Crystal Structure Of D. Discoideum Actin-Gelsolin Segment 1
Complex Crystallized In Presence Of Lithium Atp
Length = 375
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 90/391 (23%), Positives = 152/391 (38%), Gaps = 75/391 (19%)
Query: 738 GVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDP-HTNKL-----RNLYEYKDADDLYGLLI 791
+V+D GS K G G P+ S V P HT + ++ Y +A G+L
Sbjct: 7 ALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRGILT 66
Query: 792 -------------EFIRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKH 834
+ + KI F+ +P++ +++ E+ L P R + +++F+
Sbjct: 67 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 126
Query: 835 YEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSV 894
+ ++ ++SL G TG+V+D G + +P+YEG + A L L G
Sbjct: 127 FNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAG---- 182
Query: 895 ESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIK-----VCSCFVTTMERSAEI 949
R L +K L T + E I+ DIK V F M +A
Sbjct: 183 ----RDLTDYMMKILTERGYSFTTTAERE-----IVRDIKEKLAYVALDFEQEMATAASS 233
Query: 950 AAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETAFEVLFELDLDMLNIA 997
+A ++ P G + + N + + P S I ET + + + D+D
Sbjct: 234 SALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVD----- 288
Query: 998 TIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEF 1057
I D +V S G T FP + R ++L L + IK
Sbjct: 289 -IRKDLYGNVVLSGG---TTMFP---GIADRMNKELTAL------APSTMKIKIIA---- 331
Query: 1058 PAKENYVAWLGGAIFAATESYNKRAIQKDVY 1088
P + Y W+GG+I A+ ++ + I K+ Y
Sbjct: 332 PPERKYSVWIGGSILASLSTFQQMWISKEEY 362
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 85/395 (21%), Positives = 157/395 (39%), Gaps = 72/395 (18%)
Query: 43 KGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDP-HTNKL-----RNLYEYKDADDLYGLL 96
+ +V+D GS K G G P+ S V P HT + ++ Y +A G+L
Sbjct: 6 QALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRGIL 65
Query: 97 I-------------EFIRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFK 139
+ + KI F+ +P++ +++ E+ L P R + +++F+
Sbjct: 66 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 125
Query: 140 HYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSV 199
+ ++ ++SL G TG+V+D G + +P+YEG + A L L G+ +
Sbjct: 126 TFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 185
Query: 200 EAHI-----RRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCF 254
++ RG S + ++ +IK E + ++ +++ +
Sbjct: 186 TDYMMKILTERGYSFTTTAEREIVRDIK------------EKLAYVALDFEQEMATAAS- 232
Query: 255 VTTMERSAE------IAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDM 308
+ +E+S E I N + P P G + S I ET + + + D+D
Sbjct: 233 SSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGME---SAGIHETTYNSIMKCDVD- 288
Query: 309 LNIATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFK 368
I D +V S G T FP + R ++L L + IK
Sbjct: 289 -----IRKDLYGNVVLSGG---TTMFP---GIADRMNKELTAL------APSTMKIKIIA 331
Query: 369 FHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVY 403
P + Y W+GG+I A+ ++ + I K+ Y
Sbjct: 332 ----PPERKYSVWIGGSILASLSTFQQMWISKEEY 362
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
Query: 436 GHIRETAFEVLFE---LDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLK 492
G+ R E LF+ L ++ I +S++K D++K L N++L+GGT M PG+
Sbjct: 251 GNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIA 310
Query: 493 YRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDA 552
R+ +EL L S K K+ P + Y W+GG+I A+ ++ + I K+
Sbjct: 311 DRMNKELTALAPS-TMKIKIIA--------PPERKYSVWIGGSILASLSTFQQMWISKEE 361
Query: 553 Y 553
Y
Sbjct: 362 Y 362
>pdb|1YVN|A Chain A, The Yeast Actin Val 159 Asn Mutant Complex With Human
Gelsolin Segment 1
Length = 375
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 89/405 (21%), Positives = 162/405 (40%), Gaps = 64/405 (15%)
Query: 18 AEKTGVVLDIGSKYTKYGIFGSFQPKGVVLDIGSKYTKYGIF-GSFQPKGFIKSQVKDPH 76
+E +V+D GS K G G P+ V I + GI G Q ++ + +
Sbjct: 3 SEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGIMVGMGQKDSYVGDEAQSKR 62
Query: 77 TN-KLRNLYEY---KDADDLYGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNT 132
LR E+ + DD+ + F+ +P++ +++ E+ + P R
Sbjct: 63 GILTLRYPIEHGIVTNWDDMEKIW----HHTFYNELRVAPEEHPVLLTEAPMNPKSNREK 118
Query: 133 LAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDL 192
+ +++F+ + V + ++SL + G TG+VLD G ++P+Y G + A +
Sbjct: 119 MTQIMFETFNVPAFYVSIQAVLSLYSSGRTTGIVLDSGDGNTHVVPIYAGFSLPHAILRI 178
Query: 193 SLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCS 252
L G+ + ++ +K L T + E I+ DIK
Sbjct: 179 DLAGRDLTDYL-----------------MKILSERGYSFSTTAERE-----IVRDIKEKL 216
Query: 253 CFVT-TMERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFE---LDLDM 308
C+V E+ + AA++ + Y L +G+ I + G+ R A E LF L L+
Sbjct: 217 CYVALDFEQEMQTAAQSSSIEKS----YELPDGQVITI-GNERFRAPEALFHPSVLGLES 271
Query: 309 LNIATIILDSLLSVASSDGREE----------TQYFPFRCWVNTRTPEKLCCLVGWSNIC 358
I +S++ D R+E T FP + R +++ L S
Sbjct: 272 AGIDQTTYNSIMK-CDVDVRKELYGNIVMSGGTTMFP---GIAERMQKEITALAPSS--- 324
Query: 359 CYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVY 403
+ +K P + Y W+GG+I A+ ++ + I K Y
Sbjct: 325 ---MKVKIIA----PPERKYSVWIGGSILASLTTFQQMWISKQEY 362
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 88/389 (22%), Positives = 154/389 (39%), Gaps = 69/389 (17%)
Query: 737 TGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL------RNLYEYKDADDLYGLL 790
+V+D GS K G G P+ S V P + ++ Y +A G+L
Sbjct: 6 AALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGIMVGMGQKDSYVGDEAQSKRGIL 65
Query: 791 I-------------EFIRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFK 833
+ + KI F+ +P++ +++ E+ + P R + +++F+
Sbjct: 66 TLRYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKSNREKMTQIMFE 125
Query: 834 HYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQS 893
+ V + ++SL + G TG+VLD G ++P+Y G + A + L G
Sbjct: 126 TFNVPAFYVSIQAVLSLYSSGRTTGIVLDSGDGNTHVVPIYAGFSLPHAILRIDLAG--- 182
Query: 894 VESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT-TMERSAEIAAK 952
R L +K L T + E I+ DIK C+V E+ + AA+
Sbjct: 183 -----RDLTDYLMKILSERGYSFSTTAERE-----IVRDIKEKLCYVALDFEQEMQTAAQ 232
Query: 953 NPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFE---LDLDMLNIATIILDSLLSVAS 1009
+ + Y L +G+ I + G+ R A E LF L L+ I +S++
Sbjct: 233 SSSIEKS----YELPDGQVITI-GNERFRAPEALFHPSVLGLESAGIDQTTYNSIMK-CD 286
Query: 1010 SDGREE----------TQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPA 1059
D R+E T FP + R +++ L S + +K P
Sbjct: 287 VDVRKELYGNIVMSGGTTMFP---GIAERMQKEITALAPSS------MKVKIIA----PP 333
Query: 1060 KENYVAWLGGAIFAATESYNKRAIQKDVY 1088
+ Y W+GG+I A+ ++ + I K Y
Sbjct: 334 ERKYSVWIGGSILASLTTFQQMWISKQEY 362
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 12/121 (9%)
Query: 436 GHIRETAFEVLFE---LDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLK 492
G+ R A E LF L L+ I +S++K D++K L NI+++GGT M PG+
Sbjct: 251 GNERFRAPEALFHPSVLGLESAGIDQTTYNSIMKCDVDVRKELYGNIVMSGGTTMFPGIA 310
Query: 493 YRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDA 552
R+ +E+ L S K K+ P + Y W+GG+I A+ ++ + I K
Sbjct: 311 ERMQKEITALAPS-SMKVKIIA--------PPERKYSVWIGGSILASLTTFQQMWISKQE 361
Query: 553 Y 553
Y
Sbjct: 362 Y 362
>pdb|3EKS|A Chain A, Crystal Structure Of Monomeric Actin Bound To Cytochalasin D
pdb|3EKU|A Chain A, Crystal Structure Of Monomeric Actin Bound To Cytochalasin D
pdb|3EL2|A Chain A, Crystal Structure Of Monomeric Actin Bound To Ca-Atp
Length = 375
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 88/388 (22%), Positives = 154/388 (39%), Gaps = 69/388 (17%)
Query: 738 GVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL------RNLYEYKDADDLYGLLI 791
+V+D GS K G G P+ S V P + ++ Y +A G+L
Sbjct: 7 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 66
Query: 792 -------------EFIRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKH 834
+ + KI F+ +P++ +++ E+ L P R + +++F+
Sbjct: 67 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 126
Query: 835 YEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSV 894
+ ++ ++SL G TG+VLD G + +P+YEG + A L L G
Sbjct: 127 FNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG---- 182
Query: 895 ESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT-TMERSAEIAAKN 953
R L +K L T E+ E I+ DIK C+V E+ AA +
Sbjct: 183 ----RDLTDYLMKILTERGYSFTTTEERE-----IVRDIKEKLCYVALDFEQEMATAASS 233
Query: 954 PDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFE---LDLDMLNIATIILDSLLSVASS 1010
+ Y LK+G+ I + G+ R E LF+ L ++ I +S++
Sbjct: 234 SSLEKS----YELKDGQVITI-GNERFRCPEALFQPSFLGMEACGIHETTYNSIMK-CDV 287
Query: 1011 DGREE----------TQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAK 1060
D R++ T +P + R +++ L + + IK P +
Sbjct: 288 DIRKDLYANTVLSGGTTMYP---GIADRMQKEITALAPST------MKIKIIA----PPE 334
Query: 1061 ENYVAWLGGAIFAATESYNKRAIQKDVY 1088
Y W+GG+I A+ ++ + I K Y
Sbjct: 335 RKYSVWIGGSILASLSTFQQMWISKQEY 362
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 91/405 (22%), Positives = 164/405 (40%), Gaps = 66/405 (16%)
Query: 19 EKTGVVLDIGSKYTKYGIFGSFQPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTN 78
E +V+D GS K G G P+ V I + G+ K S V D +
Sbjct: 4 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK---DSYVGDEAQS 60
Query: 79 KLRNLYEYKDADDLYGLLIEF--IRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNT 132
K R + K + +G++ + + KI F+ +P++ +++ E+ L P R
Sbjct: 61 K-RGILTLKYPIE-HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 118
Query: 133 LAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDL 192
+ +++F+ + ++ ++SL G TG+VLD G + +P+YEG + A L
Sbjct: 119 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 178
Query: 193 SLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCS 252
L G+ + ++ +K L T E+ E I+ DIK
Sbjct: 179 DLAGRDLTDYL-----------------MKILTERGYSFTTTEERE-----IVRDIKEKL 216
Query: 253 CFVT-TMERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFE---LDLDM 308
C+V E+ AA + + Y LK+G+ I + G+ R E LF+ L ++
Sbjct: 217 CYVALDFEQEMATAASSSSLEKS----YELKDGQVITI-GNERFRCPEALFQPSFLGMEA 271
Query: 309 LNIATIILDSLLSVASSDGREE----------TQYFPFRCWVNTRTPEKLCCLVGWSNIC 358
I +S++ D R++ T +P + R +++ L +
Sbjct: 272 CGIHETTYNSIMK-CDVDIRKDLYANTVLSGGTTMYP---GIADRMQKEITALAPST--- 324
Query: 359 CYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVY 403
+ IK P + Y W+GG+I A+ ++ + I K Y
Sbjct: 325 ---MKIKIIA----PPERKYSVWIGGSILASLSTFQQMWISKQEY 362
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 12/121 (9%)
Query: 436 GHIRETAFEVLFE---LDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLK 492
G+ R E LF+ L ++ I +S++K D++K L N +L+GGT M PG+
Sbjct: 251 GNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIA 310
Query: 493 YRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDA 552
R+ +E+ L S K K+ P + Y W+GG+I A+ ++ + I K
Sbjct: 311 DRMQKEITALAPS-TMKIKIIA--------PPERKYSVWIGGSILASLSTFQQMWISKQE 361
Query: 553 Y 553
Y
Sbjct: 362 Y 362
>pdb|3CI5|A Chain A, Complex Of Phosphorylated Dictyostelium Discoideum Actin
With Gelsolin
Length = 375
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 89/391 (22%), Positives = 152/391 (38%), Gaps = 75/391 (19%)
Query: 738 GVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDP-HTNKLRNLYEYK-----DADDLYGLLI 791
+V+D GS K G G P+ S V P HT + + + +A G+L
Sbjct: 7 ALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSXVGDEAQSKRGILT 66
Query: 792 -------------EFIRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKH 834
+ + KI F+ +P++ +++ E+ L P R + +++F+
Sbjct: 67 LKYPIEXGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 126
Query: 835 YEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSV 894
+ ++ ++SL G TG+V+D G + +P+YEG + A L L G
Sbjct: 127 FNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAG---- 182
Query: 895 ESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIK-----VCSCFVTTMERSAEI 949
R L +K L T + E I+ DIK V F M+ +A
Sbjct: 183 ----RDLTDYMMKILTERGYSFTTTAERE-----IVRDIKEKLAYVALDFEAEMQTAASS 233
Query: 950 AAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETAFEVLFELDLDMLNIA 997
+A ++ P G + + N + + P S I ET + + + D+D
Sbjct: 234 SALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVD----- 288
Query: 998 TIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEF 1057
I D +V S G T FP + R ++L L + IK
Sbjct: 289 -IRKDLYGNVVLSGG---TTMFP---GIADRMNKELTAL------APSTMKIKIIA---- 331
Query: 1058 PAKENYVAWLGGAIFAATESYNKRAIQKDVY 1088
P + Y W+GG+I A+ ++ + I K+ Y
Sbjct: 332 PPERKYSVWIGGSILASLSTFQQMWISKEEY 362
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 88/408 (21%), Positives = 157/408 (38%), Gaps = 78/408 (19%)
Query: 22 GVVLDIGSKYTKYGIFGSFQPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLR 81
+V+D GS K G G P+ V I + G+ K S V D +K R
Sbjct: 7 ALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQK---DSXVGDEAQSK-R 62
Query: 82 NLYEYK---------DADDLYGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNT 132
+ K + DD+ + F+ +P++ +++ E+ L P R
Sbjct: 63 GILTLKYPIEXGIVTNWDDMEKIW----HHTFYNELRVAPEEHPVLLTEAPLNPKANREK 118
Query: 133 LAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDL 192
+ +++F+ + ++ ++SL G TG+V+D G + +P+YEG + A L
Sbjct: 119 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRL 178
Query: 193 SLGGQSVEAHI-----RRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIED 247
L G+ + ++ RG S + ++ +IK E L+
Sbjct: 179 DLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIK---------------EKLA------ 217
Query: 248 IKVCSCFVTTMERSAEIAAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRE 295
V F M+ +A +A ++ P G + + N + + P S I E
Sbjct: 218 -YVALDFEAEMQTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHE 276
Query: 296 TAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWS 355
T + + + D+D I D +V S G T FP + R ++L L
Sbjct: 277 TTYNSIMKCDVD------IRKDLYGNVVLSGG---TTMFP---GIADRMNKELTAL---- 320
Query: 356 NICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVY 403
+ IK P + Y W+GG+I A+ ++ + I K+ Y
Sbjct: 321 --APSTMKIKIIA----PPERKYSVWIGGSILASLSTFQQMWISKEEY 362
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
Query: 436 GHIRETAFEVLFE---LDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLK 492
G+ R E LF+ L ++ I +S++K D++K L N++L+GGT M PG+
Sbjct: 251 GNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIA 310
Query: 493 YRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDA 552
R+ +EL L S K K+ P + Y W+GG+I A+ ++ + I K+
Sbjct: 311 DRMNKELTALAPS-TMKIKIIA--------PPERKYSVWIGGSILASLSTFQQMWISKEE 361
Query: 553 Y 553
Y
Sbjct: 362 Y 362
>pdb|3B63|F Chain F, Actin Filament Model In The Extended Form Of Acromsomal
Bundle In The Limulus Sperm
Length = 357
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 89/391 (22%), Positives = 149/391 (38%), Gaps = 74/391 (18%)
Query: 737 TGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL------RNLYEYKDADDLYGLL 790
T +V D GS K G G P+ S V P + ++ Y +A G+L
Sbjct: 2 TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 61
Query: 791 -----IEFI-----------RKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKH 834
IE I F+ +P++ ++ E+ L P R + +++F+
Sbjct: 62 TLKYPIEGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFET 121
Query: 835 YEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSV 894
+ V ++ ++SL G TG+VLD G +P+YEG + A L L G
Sbjct: 122 FNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAG---- 177
Query: 895 ESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT-----TMERSAEI 949
R L +K L VT + E I+ DIK C+V M +A
Sbjct: 178 ----RDLTDYLMKILTERGYSFVTTAERE-----IVRDIKEKLCYVALDFENEMATAASS 228
Query: 950 AAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETAFEVLFELDLDMLNIA 997
++ ++ P G + + N + + P S I ET + + + D+D
Sbjct: 229 SSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDID----- 283
Query: 998 TIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEF 1057
I D + S G T +P + R +++ L + + IK
Sbjct: 284 -IRKDLYANNVMSGG---TTMYP---GIADRMQKEITALAPST------MKIKIIA---- 326
Query: 1058 PAKENYVAWLGGAIFAATESYNKRAIQKDVY 1088
P + Y W+GG+I A+ ++ + I K Y
Sbjct: 327 PPERKYSVWIGGSILASLSTFQQMWITKQEY 357
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 84/401 (20%), Positives = 153/401 (38%), Gaps = 63/401 (15%)
Query: 21 TGVVLDIGSKYTKYGIFGSFQPKGVVLDIGSKYTKYGIF-GSFQPKGFIKSQVKDPHTNK 79
T +V D GS K G G P+ V I + G+ G Q ++ + +
Sbjct: 2 TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR-GI 60
Query: 80 LRNLYEYKDADDLYGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFK 139
L Y + + + + F+ +P++ ++ E+ L P R + +++F+
Sbjct: 61 LTLKYPIEGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFE 120
Query: 140 HYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSV 199
+ V ++ ++SL G TG+VLD G +P+YEG + A L L G+ +
Sbjct: 121 TFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDL 180
Query: 200 EAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT--- 256
++ +K L VT + E I+ DIK C+V
Sbjct: 181 TDYL-----------------MKILTERGYSFVTTAERE-----IVRDIKEKLCYVALDF 218
Query: 257 --TMERSAEIAAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETAFEVLF 302
M +A ++ ++ P G + + N + + P S I ET + +
Sbjct: 219 ENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIM 278
Query: 303 ELDLDMLNIATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKL 362
+ D+D I D + S G T +P + R +++ L + +
Sbjct: 279 KCDID------IRKDLYANNVMSGG---TTMYP---GIADRMQKEITALAPST------M 320
Query: 363 FIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVY 403
IK P + Y W+GG+I A+ ++ + I K Y
Sbjct: 321 KIKIIA----PPERKYSVWIGGSILASLSTFQQMWITKQEY 357
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 10/114 (8%)
Query: 440 ETAFEVLFELDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLLQEL 499
ET F+ F + ++ I +S++K D++K L N +++GGT M PG+ R+ +E+
Sbjct: 254 ETLFQPSF-IGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEI 312
Query: 500 RTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAY 553
L S K K+ P + Y W+GG+I A+ ++ + I K Y
Sbjct: 313 TALAPS-TMKIKIIA--------PPERKYSVWIGGSILASLSTFQQMWITKQEY 357
>pdb|3B63|B Chain B, Actin Filament Model In The Extended Form Of Acromsomal
Bundle In The Limulus Sperm
Length = 364
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 89/391 (22%), Positives = 149/391 (38%), Gaps = 74/391 (18%)
Query: 737 TGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL------RNLYEYKDADDLYGLL 790
T +V D GS K G G P+ S V P + ++ Y +A G+L
Sbjct: 1 TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 60
Query: 791 -----IEFI-----------RKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKH 834
IE I F+ +P++ ++ E+ L P R + +++F+
Sbjct: 61 TLKYPIEGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFET 120
Query: 835 YEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSV 894
+ V ++ ++SL G TG+VLD G +P+YEG + A L L G
Sbjct: 121 FNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAG---- 176
Query: 895 ESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT-----TMERSAEI 949
R L +K L VT + E I+ DIK C+V M +A
Sbjct: 177 ----RDLTDYLMKILTERGYSFVTTAERE-----IVRDIKEKLCYVALDFENEMATAASS 227
Query: 950 AAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETAFEVLFELDLDMLNIA 997
++ ++ P G + + N + + P S I ET + + + D+D
Sbjct: 228 SSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDID----- 282
Query: 998 TIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEF 1057
I D + S G T +P + R +++ L + + IK
Sbjct: 283 -IRKDLYANNVMSGG---TTMYP---GIADRMQKEITALAPST------MKIKIIA---- 325
Query: 1058 PAKENYVAWLGGAIFAATESYNKRAIQKDVY 1088
P + Y W+GG+I A+ ++ + I K Y
Sbjct: 326 PPERKYSVWIGGSILASLSTFQQMWITKQEY 356
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 84/401 (20%), Positives = 153/401 (38%), Gaps = 63/401 (15%)
Query: 21 TGVVLDIGSKYTKYGIFGSFQPKGVVLDIGSKYTKYGIF-GSFQPKGFIKSQVKDPHTNK 79
T +V D GS K G G P+ V I + G+ G Q ++ + +
Sbjct: 1 TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR-GI 59
Query: 80 LRNLYEYKDADDLYGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFK 139
L Y + + + + F+ +P++ ++ E+ L P R + +++F+
Sbjct: 60 LTLKYPIEGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFE 119
Query: 140 HYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSV 199
+ V ++ ++SL G TG+VLD G +P+YEG + A L L G+ +
Sbjct: 120 TFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDL 179
Query: 200 EAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT--- 256
++ +K L VT + E I+ DIK C+V
Sbjct: 180 TDYL-----------------MKILTERGYSFVTTAERE-----IVRDIKEKLCYVALDF 217
Query: 257 --TMERSAEIAAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETAFEVLF 302
M +A ++ ++ P G + + N + + P S I ET + +
Sbjct: 218 ENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIM 277
Query: 303 ELDLDMLNIATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKL 362
+ D+D I D + S G T +P + R +++ L + +
Sbjct: 278 KCDID------IRKDLYANNVMSGG---TTMYP---GIADRMQKEITALAPST------M 319
Query: 363 FIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVY 403
IK P + Y W+GG+I A+ ++ + I K Y
Sbjct: 320 KIKIIA----PPERKYSVWIGGSILASLSTFQQMWITKQEY 356
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 10/114 (8%)
Query: 440 ETAFEVLFELDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLLQEL 499
ET F+ F + ++ I +S++K D++K L N +++GGT M PG+ R+ +E+
Sbjct: 253 ETLFQPSF-IGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEI 311
Query: 500 RTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAY 553
L S + IK P + Y W+GG+I A+ ++ + I K Y
Sbjct: 312 TALAPS-----TMKIKIIA----PPERKYSVWIGGSILASLSTFQQMWITKQEY 356
>pdb|2HF3|A Chain A, Crystal Structure Of Monomeric Actin In The Adp Bound State
pdb|2HF4|A Chain A, Crystal Structure Of Monomeric Actin In Its Atp-Bound State
pdb|3MN7|A Chain A, Structures Of Actin-Bound Wh2 Domains Of Spire And The
Implication For Filament Nucleation
pdb|3MN9|A Chain A, Structures Of Actin-Bound Wh2 Domains Of Spire And The
Implication For Filament Nucleation
pdb|3MMV|A Chain A, Structures Of Actin-Bound Wh2 Domains Of Spire And The
Implication For Filament Nucleation
pdb|3MN6|A Chain A, Structures Of Actin-Bound Wh2 Domains Of Spire And The
Implication For Filament Nucleation
pdb|3MN6|F Chain F, Structures Of Actin-Bound Wh2 Domains Of Spire And The
Implication For Filament Nucleation
pdb|3MN6|K Chain K, Structures Of Actin-Bound Wh2 Domains Of Spire And The
Implication For Filament Nucleation
Length = 374
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 88/388 (22%), Positives = 154/388 (39%), Gaps = 69/388 (17%)
Query: 738 GVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL------RNLYEYKDADDLYGLLI 791
+V+D GS K G G P+ S V P + ++ Y +A G+L
Sbjct: 6 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 65
Query: 792 -------------EFIRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKH 834
+ + KI F+ +P++ +++ E+ L P R + +++F+
Sbjct: 66 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 125
Query: 835 YEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSV 894
+ ++ ++SL G TG+VLD G + +P+YEG + A L L G
Sbjct: 126 FNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG---- 181
Query: 895 ESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT-TMERSAEIAAKN 953
R L +K L T E+ E I+ DIK C+V E+ AA +
Sbjct: 182 ----RDLTDYLMKILTERGYSFTTTEERE-----IVRDIKEKLCYVALDFEQEMATAASS 232
Query: 954 PDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFE---LDLDMLNIATIILDSLLSVASS 1010
+ Y LK+G+ I + G+ R E LF+ L ++ I +S++
Sbjct: 233 SSLEKS----YELKDGQVITI-GNERFRCPEALFQPSFLGMEACGIHETTYNSIMK-CDV 286
Query: 1011 DGREE----------TQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAK 1060
D R++ T +P + R +++ L + + IK P +
Sbjct: 287 DIRKDLYANTVLSGGTTMYP---GIADRMQKEITALAPST------MKIKIIA----PPE 333
Query: 1061 ENYVAWLGGAIFAATESYNKRAIQKDVY 1088
Y W+GG+I A+ ++ + I K Y
Sbjct: 334 RKYSVWIGGSILASLSTFQQMWISKQEY 361
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 91/405 (22%), Positives = 164/405 (40%), Gaps = 66/405 (16%)
Query: 19 EKTGVVLDIGSKYTKYGIFGSFQPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTN 78
E +V+D GS K G G P+ V I + G+ K S V D +
Sbjct: 3 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK---DSYVGDEAQS 59
Query: 79 KLRNLYEYKDADDLYGLLIEF--IRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNT 132
K R + K + +G++ + + KI F+ +P++ +++ E+ L P R
Sbjct: 60 K-RGILTLKYPIE-HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 117
Query: 133 LAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDL 192
+ +++F+ + ++ ++SL G TG+VLD G + +P+YEG + A L
Sbjct: 118 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 177
Query: 193 SLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCS 252
L G+ + ++ +K L T E+ E I+ DIK
Sbjct: 178 DLAGRDLTDYL-----------------MKILTERGYSFTTTEERE-----IVRDIKEKL 215
Query: 253 CFVT-TMERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFE---LDLDM 308
C+V E+ AA + + Y LK+G+ I + G+ R E LF+ L ++
Sbjct: 216 CYVALDFEQEMATAASSSSLEKS----YELKDGQVITI-GNERFRCPEALFQPSFLGMEA 270
Query: 309 LNIATIILDSLLSVASSDGREE----------TQYFPFRCWVNTRTPEKLCCLVGWSNIC 358
I +S++ D R++ T +P + R +++ L +
Sbjct: 271 CGIHETTYNSIMK-CDVDIRKDLYANTVLSGGTTMYP---GIADRMQKEITALAPST--- 323
Query: 359 CYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVY 403
+ IK P + Y W+GG+I A+ ++ + I K Y
Sbjct: 324 ---MKIKIIA----PPERKYSVWIGGSILASLSTFQQMWISKQEY 361
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 12/121 (9%)
Query: 436 GHIRETAFEVLFE---LDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLK 492
G+ R E LF+ L ++ I +S++K D++K L N +L+GGT M PG+
Sbjct: 250 GNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIA 309
Query: 493 YRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDA 552
R+ +E+ L S K K+ P + Y W+GG+I A+ ++ + I K
Sbjct: 310 DRMQKEITALAPS-TMKIKIIA--------PPERKYSVWIGGSILASLSTFQQMWISKQE 360
Query: 553 Y 553
Y
Sbjct: 361 Y 361
>pdb|3W3D|A Chain A, Crystal Structure Of Smooth Muscle G Actin Dnase I Complex
Length = 374
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 86/392 (21%), Positives = 152/392 (38%), Gaps = 75/392 (19%)
Query: 737 TGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL------RNLYEYKDADDLYGLL 790
T +V D GS K G G P+ S V P + ++ Y +A G+L
Sbjct: 5 TALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 64
Query: 791 I-------------EFIRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFK 833
+ + KI F+ +P++ ++ E+ L P R + +++F+
Sbjct: 65 TLKYPIEXGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFE 124
Query: 834 HYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQS 893
+ V ++ ++SL G TG+VLD G +P+YEG + A L L G
Sbjct: 125 TFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAG--- 181
Query: 894 VESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT-----TMERSAE 948
R L +K L VT + E I+ DIK C+V M +A
Sbjct: 182 -----RDLTDYLMKILTERGYSFVTTAERE-----IVRDIKEKLCYVALDFENEMATAAS 231
Query: 949 IAAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETAFEVLFELDLDMLNI 996
++ ++ P G + + N + + P S I ET + + + D+D+
Sbjct: 232 SSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRK- 290
Query: 997 ATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHE 1056
+ +++LS T +P + R +++ L + + IK
Sbjct: 291 -DLYANNVLSGG-------TTMYP---GIADRMQKEITALAPST------MKIKIIA--- 330
Query: 1057 FPAKENYVAWLGGAIFAATESYNKRAIQKDVY 1088
P + Y W+GG+I A+ ++ + I K Y
Sbjct: 331 -PPERKYSVWIGGSILASLSTFQQMWISKQEY 361
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 89/408 (21%), Positives = 161/408 (39%), Gaps = 72/408 (17%)
Query: 19 EKTGVVLDIGSKYTKYGIFGSFQPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTN 78
E T +V D GS K G G P+ V I + G+ K S V D +
Sbjct: 3 ETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK---DSYVGDEAQS 59
Query: 79 KLRNLYEYKDADDLYGLLIEF--IRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNT 132
K R + K + G++ + + KI F+ +P++ ++ E+ L P R
Sbjct: 60 K-RGILTLKYPIEX-GIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREK 117
Query: 133 LAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDL 192
+ +++F+ + V ++ ++SL G TG+VLD G +P+YEG + A L
Sbjct: 118 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL 177
Query: 193 SLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCS 252
L G+ + ++ +K L VT + E I+ DIK
Sbjct: 178 DLAGRDLTDYL-----------------MKILTERGYSFVTTAERE-----IVRDIKEKL 215
Query: 253 CFVT-----TMERSAEIAAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRE 295
C+V M +A ++ ++ P G + + N + + P S I E
Sbjct: 216 CYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHE 275
Query: 296 TAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWS 355
T + + + D+D+ + +++LS T +P + R +++ L +
Sbjct: 276 TTYNSIMKCDIDIRK--DLYANNVLSGG-------TTMYP---GIADRMQKEITALAPST 323
Query: 356 NICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVY 403
+ IK P + Y W+GG+I A+ ++ + I K Y
Sbjct: 324 ------MKIKIIA----PPERKYSVWIGGSILASLSTFQQMWISKQEY 361
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 10/114 (8%)
Query: 440 ETAFEVLFELDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLLQEL 499
ET F+ F + ++ I +S++K D++K L N +L+GGT M PG+ R+ +E+
Sbjct: 258 ETLFQPSF-IGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEI 316
Query: 500 RTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAY 553
L S K K+ P + Y W+GG+I A+ ++ + I K Y
Sbjct: 317 TALAPS-TMKIKIIA--------PPERKYSVWIGGSILASLSTFQQMWISKQEY 361
>pdb|3B63|A Chain A, Actin Filament Model In The Extended Form Of Acromsomal
Bundle In The Limulus Sperm
pdb|3B63|G Chain G, Actin Filament Model In The Extended Form Of Acromsomal
Bundle In The Limulus Sperm
Length = 365
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 88/389 (22%), Positives = 154/389 (39%), Gaps = 69/389 (17%)
Query: 737 TGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL------RNLYEYKDADDLYGLL 790
+V+D GS K G G P+ S V P + ++ Y +A G+L
Sbjct: 1 AALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGIMVGMGQKDSYVGDEAQSKRGIL 60
Query: 791 I-------------EFIRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFK 833
+ + KI F+ +P++ +++ E+ + P R + +++F+
Sbjct: 61 TLRYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKSNREKMTQIMFE 120
Query: 834 HYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQS 893
+ V + ++SL + G TG+VLD G ++P+Y G + A + L G
Sbjct: 121 TFNVPAFYVSIQAVLSLYSSGRTTGIVLDSGDGNTHVVPIYAGFSLPHAILRIDLAG--- 177
Query: 894 VESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT-TMERSAEIAAK 952
R L +K L T + E I+ DIK C+V E+ + AA+
Sbjct: 178 -----RDLTDYLMKILSERGYSFSTTAERE-----IVRDIKEKLCYVALDFEQEMQTAAQ 227
Query: 953 NPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFE---LDLDMLNIATIILDSLLSVAS 1009
+ + Y L +G+ I + G+ R A E LF L L+ I +S++
Sbjct: 228 SSSIEKS----YELPDGQVITI-GNERFRAPEALFHPSVLGLESAGIDQTTYNSIMK-CD 281
Query: 1010 SDGREE----------TQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPA 1059
D R+E T FP + R +++ L S + +K P
Sbjct: 282 VDVRKELYGNIVMSGGTTMFP---GIAERMQKEITALAPSS------MKVKIIA----PP 328
Query: 1060 KENYVAWLGGAIFAATESYNKRAIQKDVY 1088
+ Y W+GG+I A+ ++ + I K Y
Sbjct: 329 ERKYSVWIGGSILASLTTFQQMWISKQEY 357
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 88/402 (21%), Positives = 160/402 (39%), Gaps = 64/402 (15%)
Query: 21 TGVVLDIGSKYTKYGIFGSFQPKGVVLDIGSKYTKYGIF-GSFQPKGFIKSQVKDPHTN- 78
+V+D GS K G G P+ V I + GI G Q ++ + +
Sbjct: 1 AALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGIMVGMGQKDSYVGDEAQSKRGIL 60
Query: 79 KLRNLYEY---KDADDLYGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAK 135
LR E+ + DD+ + F+ +P++ +++ E+ + P R + +
Sbjct: 61 TLRYPIEHGIVTNWDDMEKIW----HHTFYNELRVAPEEHPVLLTEAPMNPKSNREKMTQ 116
Query: 136 VLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLG 195
++F+ + V + ++SL + G TG+VLD G ++P+Y G + A + L
Sbjct: 117 IMFETFNVPAFYVSIQAVLSLYSSGRTTGIVLDSGDGNTHVVPIYAGFSLPHAILRIDLA 176
Query: 196 GQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFV 255
G+ + ++ +K L T + E I+ DIK C+V
Sbjct: 177 GRDLTDYL-----------------MKILSERGYSFSTTAERE-----IVRDIKEKLCYV 214
Query: 256 T-TMERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFE---LDLDMLNI 311
E+ + AA++ + Y L +G+ I + G+ R A E LF L L+ I
Sbjct: 215 ALDFEQEMQTAAQSSSIEKS----YELPDGQVITI-GNERFRAPEALFHPSVLGLESAGI 269
Query: 312 ATIILDSLLSVASSDGREE----------TQYFPFRCWVNTRTPEKLCCLVGWSNICCYK 361
+S++ D R+E T FP + R +++ L S
Sbjct: 270 DQTTYNSIMK-CDVDVRKELYGNIVMSGGTTMFP---GIAERMQKEITALAPSS------ 319
Query: 362 LFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVY 403
+ +K P + Y W+GG+I A+ ++ + I K Y
Sbjct: 320 MKVKIIA----PPERKYSVWIGGSILASLTTFQQMWISKQEY 357
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 12/121 (9%)
Query: 436 GHIRETAFEVLFE---LDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLK 492
G+ R A E LF L L+ I +S++K D++K L NI+++GGT M PG+
Sbjct: 246 GNERFRAPEALFHPSVLGLESAGIDQTTYNSIMKCDVDVRKELYGNIVMSGGTTMFPGIA 305
Query: 493 YRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDA 552
R+ +E+ L S K K+ P + Y W+GG+I A+ ++ + I K
Sbjct: 306 ERMQKEITALAPS-SMKVKIIA--------PPERKYSVWIGGSILASLTTFQQMWISKQE 356
Query: 553 Y 553
Y
Sbjct: 357 Y 357
>pdb|1EQY|A Chain A, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin
Domain 1
pdb|1ESV|A Chain A, Complex Between Latrunculin A:rabbit Muscle Alpha
Actin:human Gelsolin Domain 1
pdb|1MDU|B Chain B, Crystal Structure Of The Chicken Actin Trimer Complexed With
Human Gelsolin Segment 1 (Gs-1)
pdb|1MDU|E Chain E, Crystal Structure Of The Chicken Actin Trimer Complexed With
Human Gelsolin Segment 1 (Gs-1)
pdb|2PBD|A Chain A, Ternary Complex Of Profilin-Actin With The Poly-Pro-Gab
Domain Of Vasp
Length = 377
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 88/392 (22%), Positives = 150/392 (38%), Gaps = 75/392 (19%)
Query: 737 TGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL------RNLYEYKDADDLYGLL 790
T +V D GS K G G P+ S V P + ++ Y +A G+L
Sbjct: 8 TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 67
Query: 791 I-------------EFIRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFK 833
+ + KI F+ +P++ ++ E+ L P R + +++F+
Sbjct: 68 TLKYPIEXGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFE 127
Query: 834 HYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQS 893
+ V ++ ++SL G TG+VLD G +P+YEG + A L L G
Sbjct: 128 TFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAG--- 184
Query: 894 VESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT-----TMERSAE 948
R L +K L VT + E I+ DIK C+V M +A
Sbjct: 185 -----RDLTDYLMKILTERGYSFVTTAERE-----IVRDIKEKLCYVALDFENEMATAAS 234
Query: 949 IAAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETAFEVLFELDLDMLNI 996
++ ++ P G + + N + + P S I ET + + + D+D
Sbjct: 235 SSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDID---- 290
Query: 997 ATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHE 1056
I D + S G T +P + R +++ L + + IK
Sbjct: 291 --IRKDLYANNVMSGG---TTMYP---GIADRMQKEITALAPST------MKIKIIA--- 333
Query: 1057 FPAKENYVAWLGGAIFAATESYNKRAIQKDVY 1088
P + Y W+GG+I A+ ++ + I K Y
Sbjct: 334 -PPERKYSVWIGGSILASLSTFQQMWITKQEY 364
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 90/411 (21%), Positives = 156/411 (37%), Gaps = 78/411 (18%)
Query: 19 EKTGVVLDIGSKYTKYGIFGSFQPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTN 78
E T +V D GS K G G P+ V I + G+ K S V D +
Sbjct: 6 ETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK---DSYVGDEAQS 62
Query: 79 KLRNLYEYK---------DADDLYGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVW 129
K R + K + DD+ + F+ +P++ ++ E+ L P
Sbjct: 63 K-RGILTLKYPIEXGIITNWDDMEKIW----HHTFYNELRVAPEEHPTLLTEAPLNPKAN 117
Query: 130 RNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAW 189
R + +++F+ + V ++ ++SL G TG+VLD G +P+YEG + A
Sbjct: 118 REKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAI 177
Query: 190 KDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIK 249
L L G+ + ++ +K L VT + E I+ DIK
Sbjct: 178 MRLDLAGRDLTDYL-----------------MKILTERGYSFVTTAERE-----IVRDIK 215
Query: 250 VCSCFVT-----TMERSAEIAAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGH 292
C+V M +A ++ ++ P G + + N + + P S
Sbjct: 216 EKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAG 275
Query: 293 IRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLV 352
I ET + + + D+D I D + S G T +P + R +++ L
Sbjct: 276 IHETTYNSIMKCDID------IRKDLYANNVMSGG---TTMYP---GIADRMQKEITALA 323
Query: 353 GWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVY 403
+ + IK P + Y W+GG+I A+ ++ + I K Y
Sbjct: 324 PST------MKIKIIA----PPERKYSVWIGGSILASLSTFQQMWITKQEY 364
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 10/114 (8%)
Query: 440 ETAFEVLFELDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLLQEL 499
ET F+ F + ++ I +S++K D++K L N +++GGT M PG+ R+ +E+
Sbjct: 261 ETLFQPSF-IGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEI 319
Query: 500 RTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAY 553
L S K K+ P + Y W+GG+I A+ ++ + I K Y
Sbjct: 320 TALAPS-TMKIKIIA--------PPERKYSVWIGGSILASLSTFQQMWITKQEY 364
>pdb|1IJJ|A Chain A, The X-Ray Crystal Structure Of The Complex Between Rabbit
Skeletal Muscle Actin And Latrunculin A At 2.85 A
Resolution
pdb|1IJJ|B Chain B, The X-Ray Crystal Structure Of The Complex Between Rabbit
Skeletal Muscle Actin And Latrunculin A At 2.85 A
Resolution
pdb|1P8Z|A Chain A, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin
Residues Val26-Glu156
pdb|1SQK|A Chain A, Crystal Structure Of Ciboulot In Complex With Skeletal Actin
pdb|1RGI|A Chain A, Crystal Structure Of Gelsolin Domains G1-G3 Bound To Actin
pdb|3CJB|A Chain A, Actin Dimer Cross-Linked By V. Cholerae Martx Toxin And
Complexed With Gelsolin-Segment 1
pdb|3CJC|A Chain A, Actin Dimer Cross-Linked By V. Cholerae Martx Toxin And
Complexed With Dnase I And Gelsolin-Segment 1
pdb|3B5U|A Chain A, Actin Filament Model From Extended Form Of Acromsomal Bundle
In The Limulus Sperm
pdb|3B5U|B Chain B, Actin Filament Model From Extended Form Of Acromsomal Bundle
In The Limulus Sperm
pdb|3B5U|C Chain C, Actin Filament Model From Extended Form Of Acromsomal Bundle
In The Limulus Sperm
pdb|3B5U|D Chain D, Actin Filament Model From Extended Form Of Acromsomal Bundle
In The Limulus Sperm
pdb|3B5U|E Chain E, Actin Filament Model From Extended Form Of Acromsomal Bundle
In The Limulus Sperm
pdb|3B5U|F Chain F, Actin Filament Model From Extended Form Of Acromsomal Bundle
In The Limulus Sperm
pdb|3B5U|G Chain G, Actin Filament Model From Extended Form Of Acromsomal Bundle
In The Limulus Sperm
pdb|3B5U|H Chain H, Actin Filament Model From Extended Form Of Acromsomal Bundle
In The Limulus Sperm
pdb|3B5U|I Chain I, Actin Filament Model From Extended Form Of Acromsomal Bundle
In The Limulus Sperm
pdb|3B5U|J Chain J, Actin Filament Model From Extended Form Of Acromsomal Bundle
In The Limulus Sperm
pdb|3B5U|K Chain K, Actin Filament Model From Extended Form Of Acromsomal Bundle
In The Limulus Sperm
pdb|3B5U|L Chain L, Actin Filament Model From Extended Form Of Acromsomal Bundle
In The Limulus Sperm
pdb|3B5U|M Chain M, Actin Filament Model From Extended Form Of Acromsomal Bundle
In The Limulus Sperm
pdb|3B5U|N Chain N, Actin Filament Model From Extended Form Of Acromsomal Bundle
In The Limulus Sperm
pdb|3DAW|A Chain A, Structure Of The Actin-Depolymerizing Factor Homology Domain
In Complex With Actin
pdb|2V51|B Chain B, Structure Of Mal-Rpel1 Complexed To Actin
pdb|2V51|D Chain D, Structure Of Mal-Rpel1 Complexed To Actin
pdb|2V52|B Chain B, Structure Of Mal-Rpel2 Complexed To G-Actin
pdb|2VYP|A Chain A, Rabbit-Muscle G-Actin In Complex With Myxobacterial
Rhizopodin
pdb|2VYP|B Chain B, Rabbit-Muscle G-Actin In Complex With Myxobacterial
Rhizopodin
pdb|3FFK|B Chain B, Crystal Structure Of Human Gelsolin Domains G1-G3 Bound To
Actin
pdb|3FFK|E Chain E, Crystal Structure Of Human Gelsolin Domains G1-G3 Bound To
Actin
pdb|2YJE|A Chain A, Oligomeric Assembly Of Actin Bound To Mrtf-A
pdb|2YJE|B Chain B, Oligomeric Assembly Of Actin Bound To Mrtf-A
pdb|2YJE|C Chain C, Oligomeric Assembly Of Actin Bound To Mrtf-A
pdb|2YJF|A Chain A, Oligomeric Assembly Of Actin Bound To Mrtf-A
pdb|2YJF|B Chain B, Oligomeric Assembly Of Actin Bound To Mrtf-A
pdb|2YJF|C Chain C, Oligomeric Assembly Of Actin Bound To Mrtf-A
pdb|2YJF|D Chain D, Oligomeric Assembly Of Actin Bound To Mrtf-A
pdb|2YJF|E Chain E, Oligomeric Assembly Of Actin Bound To Mrtf-A
pdb|3TU5|A Chain A, Actin Complex With Gelsolin Segment 1 Fused To Cobl Segment
pdb|4EAH|D Chain D, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|H Chain H, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|G Chain G, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|F Chain F, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
Length = 377
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 88/392 (22%), Positives = 150/392 (38%), Gaps = 75/392 (19%)
Query: 737 TGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL------RNLYEYKDADDLYGLL 790
T +V D GS K G G P+ S V P + ++ Y +A G+L
Sbjct: 8 TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 67
Query: 791 I-------------EFIRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFK 833
+ + KI F+ +P++ ++ E+ L P R + +++F+
Sbjct: 68 TLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFE 127
Query: 834 HYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQS 893
+ V ++ ++SL G TG+VLD G +P+YEG + A L L G
Sbjct: 128 TFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAG--- 184
Query: 894 VESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT-----TMERSAE 948
R L +K L VT + E I+ DIK C+V M +A
Sbjct: 185 -----RDLTDYLMKILTERGYSFVTTAERE-----IVRDIKEKLCYVALDFENEMATAAS 234
Query: 949 IAAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETAFEVLFELDLDMLNI 996
++ ++ P G + + N + + P S I ET + + + D+D
Sbjct: 235 SSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDID---- 290
Query: 997 ATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHE 1056
I D + S G T +P + R +++ L + + IK
Sbjct: 291 --IRKDLYANNVMSGG---TTMYP---GIADRMQKEITALAPST------MKIKIIA--- 333
Query: 1057 FPAKENYVAWLGGAIFAATESYNKRAIQKDVY 1088
P + Y W+GG+I A+ ++ + I K Y
Sbjct: 334 -PPERKYSVWIGGSILASLSTFQQMWITKQEY 364
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 91/408 (22%), Positives = 160/408 (39%), Gaps = 72/408 (17%)
Query: 19 EKTGVVLDIGSKYTKYGIFGSFQPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTN 78
E T +V D GS K G G P+ V I + G+ K S V D +
Sbjct: 6 ETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK---DSYVGDEAQS 62
Query: 79 KLRNLYEYKDADDLYGLLIEF--IRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNT 132
K R + K + +G++ + + KI F+ +P++ ++ E+ L P R
Sbjct: 63 K-RGILTLKYPIE-HGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREK 120
Query: 133 LAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDL 192
+ +++F+ + V ++ ++SL G TG+VLD G +P+YEG + A L
Sbjct: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL 180
Query: 193 SLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCS 252
L G+ + ++ +K L VT + E I+ DIK
Sbjct: 181 DLAGRDLTDYL-----------------MKILTERGYSFVTTAERE-----IVRDIKEKL 218
Query: 253 CFVT-----TMERSAEIAAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRE 295
C+V M +A ++ ++ P G + + N + + P S I E
Sbjct: 219 CYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHE 278
Query: 296 TAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWS 355
T + + + D+D I D + S G T +P + R +++ L +
Sbjct: 279 TTYNSIMKCDID------IRKDLYANNVMSGG---TTMYP---GIADRMQKEITALAPST 326
Query: 356 NICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVY 403
+ IK P + Y W+GG+I A+ ++ + I K Y
Sbjct: 327 ------MKIKIIA----PPERKYSVWIGGSILASLSTFQQMWITKQEY 364
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 10/114 (8%)
Query: 440 ETAFEVLFELDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLLQEL 499
ET F+ F + ++ I +S++K D++K L N +++GGT M PG+ R+ +E+
Sbjct: 261 ETLFQPSF-IGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEI 319
Query: 500 RTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAY 553
L S + IK P + Y W+GG+I A+ ++ + I K Y
Sbjct: 320 TALAPS-----TMKIKIIA----PPERKYSVWIGGSILASLSTFQQMWITKQEY 364
>pdb|1T44|A Chain A, Structural Basis Of Actin Sequestration By Thymosin-B4:
Implications For Arp23 ACTIVATION
Length = 370
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 88/392 (22%), Positives = 150/392 (38%), Gaps = 75/392 (19%)
Query: 737 TGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL------RNLYEYKDADDLYGLL 790
T +V D GS K G G P+ S V P + ++ Y +A G+L
Sbjct: 1 TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 60
Query: 791 I-------------EFIRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFK 833
+ + KI F+ +P++ ++ E+ L P R + +++F+
Sbjct: 61 TLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFE 120
Query: 834 HYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQS 893
+ V ++ ++SL G TG+VLD G +P+YEG + A L L G
Sbjct: 121 TFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAG--- 177
Query: 894 VESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT-----TMERSAE 948
R L +K L VT + E I+ DIK C+V M +A
Sbjct: 178 -----RDLTDYLMKILTERGYSFVTTAERE-----IVRDIKEKLCYVALDFENEMATAAS 227
Query: 949 IAAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETAFEVLFELDLDMLNI 996
++ ++ P G + + N + + P S I ET + + + D+D
Sbjct: 228 SSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDID---- 283
Query: 997 ATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHE 1056
I D + S G T +P + R +++ L + + IK
Sbjct: 284 --IRKDLYANNVMSGG---TTMYP---GIADRMQKEITALAPST------MKIKIIA--- 326
Query: 1057 FPAKENYVAWLGGAIFAATESYNKRAIQKDVY 1088
P + Y W+GG+I A+ ++ + I K Y
Sbjct: 327 -PPERKYSVWIGGSILASLSTFQQMWITKQEY 357
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 90/406 (22%), Positives = 159/406 (39%), Gaps = 72/406 (17%)
Query: 21 TGVVLDIGSKYTKYGIFGSFQPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL 80
T +V D GS K G G P+ V I + G+ K S V D +K
Sbjct: 1 TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK---DSYVGDEAQSK- 56
Query: 81 RNLYEYKDADDLYGLLIEF--IRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLA 134
R + K + +G++ + + KI F+ +P++ ++ E+ L P R +
Sbjct: 57 RGILTLKYPIE-HGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMT 115
Query: 135 KVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSL 194
+++F+ + V ++ ++SL G TG+VLD G +P+YEG + A L L
Sbjct: 116 QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDL 175
Query: 195 GGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCF 254
G+ + ++ +K L VT + E I+ DIK C+
Sbjct: 176 AGRDLTDYL-----------------MKILTERGYSFVTTAERE-----IVRDIKEKLCY 213
Query: 255 VT-----TMERSAEIAAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETA 297
V M +A ++ ++ P G + + N + + P S I ET
Sbjct: 214 VALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETT 273
Query: 298 FEVLFELDLDMLNIATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNI 357
+ + + D+D I D + S G T +P + R +++ L +
Sbjct: 274 YNSIMKCDID------IRKDLYANNVMSGG---TTMYP---GIADRMQKEITALAPST-- 319
Query: 358 CCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVY 403
+ IK P + Y W+GG+I A+ ++ + I K Y
Sbjct: 320 ----MKIKIIA----PPERKYSVWIGGSILASLSTFQQMWITKQEY 357
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 10/114 (8%)
Query: 440 ETAFEVLFELDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLLQEL 499
ET F+ F + ++ I +S++K D++K L N +++GGT M PG+ R+ +E+
Sbjct: 254 ETLFQPSF-IGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEI 312
Query: 500 RTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAY 553
L S K K+ P + Y W+GG+I A+ ++ + I K Y
Sbjct: 313 TALAPS-TMKIKIIA--------PPERKYSVWIGGSILASLSTFQQMWITKQEY 357
>pdb|1YAG|A Chain A, Structure Of The Yeast Actin-human Gelsolin Segment 1
Complex
Length = 375
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 89/405 (21%), Positives = 162/405 (40%), Gaps = 64/405 (15%)
Query: 18 AEKTGVVLDIGSKYTKYGIFGSFQPKGVVLDIGSKYTKYGIF-GSFQPKGFIKSQVKDPH 76
+E +V+D GS K G G P+ V I + GI G Q ++ + +
Sbjct: 3 SEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGIMVGMGQKDSYVGDEAQSKR 62
Query: 77 TN-KLRNLYEY---KDADDLYGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNT 132
LR E+ + DD+ + F+ +P++ +++ E+ + P R
Sbjct: 63 GILTLRYPIEHGIVTNWDDMEKIW----HHTFYNELRVAPEEHPVLLTEAPMNPKSNREK 118
Query: 133 LAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDL 192
+ +++F+ + V + ++SL + G TG+VLD G ++P+Y G + A +
Sbjct: 119 MTQIMFETFNVPAFYVSIQAVLSLYSSGRTTGIVLDSGDGVTHVVPIYAGFSLPHAILRI 178
Query: 193 SLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCS 252
L G+ + ++ +K L T + E I+ DIK
Sbjct: 179 DLAGRDLTDYL-----------------MKILSERGYSFSTTAERE-----IVRDIKEKL 216
Query: 253 CFVT-TMERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFE---LDLDM 308
C+V E+ + AA++ + Y L +G+ I + G+ R A E LF L L+
Sbjct: 217 CYVALDFEQEMQTAAQSSSIEKS----YELPDGQVITI-GNERFRAPEALFHPSVLGLES 271
Query: 309 LNIATIILDSLLSVASSDGREE----------TQYFPFRCWVNTRTPEKLCCLVGWSNIC 358
I +S++ D R+E T FP + R +++ L S
Sbjct: 272 AGIDQTTYNSIMK-CDVDVRKELYGNIVMSGGTTMFP---GIAERMQKEITALAPSS--- 324
Query: 359 CYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVY 403
+ +K P + Y W+GG+I A+ ++ + I K Y
Sbjct: 325 ---MKVKIIA----PPERKYSVWIGGSILASLTTFQQMWISKQEY 362
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 88/389 (22%), Positives = 154/389 (39%), Gaps = 69/389 (17%)
Query: 737 TGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL------RNLYEYKDADDLYGLL 790
+V+D GS K G G P+ S V P + ++ Y +A G+L
Sbjct: 6 AALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGIMVGMGQKDSYVGDEAQSKRGIL 65
Query: 791 I-------------EFIRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFK 833
+ + KI F+ +P++ +++ E+ + P R + +++F+
Sbjct: 66 TLRYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKSNREKMTQIMFE 125
Query: 834 HYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQS 893
+ V + ++SL + G TG+VLD G ++P+Y G + A + L G
Sbjct: 126 TFNVPAFYVSIQAVLSLYSSGRTTGIVLDSGDGVTHVVPIYAGFSLPHAILRIDLAG--- 182
Query: 894 VESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT-TMERSAEIAAK 952
R L +K L T + E I+ DIK C+V E+ + AA+
Sbjct: 183 -----RDLTDYLMKILSERGYSFSTTAERE-----IVRDIKEKLCYVALDFEQEMQTAAQ 232
Query: 953 NPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFE---LDLDMLNIATIILDSLLSVAS 1009
+ + Y L +G+ I + G+ R A E LF L L+ I +S++
Sbjct: 233 SSSIEKS----YELPDGQVITI-GNERFRAPEALFHPSVLGLESAGIDQTTYNSIMK-CD 286
Query: 1010 SDGREE----------TQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPA 1059
D R+E T FP + R +++ L S + +K P
Sbjct: 287 VDVRKELYGNIVMSGGTTMFP---GIAERMQKEITALAPSS------MKVKIIA----PP 333
Query: 1060 KENYVAWLGGAIFAATESYNKRAIQKDVY 1088
+ Y W+GG+I A+ ++ + I K Y
Sbjct: 334 ERKYSVWIGGSILASLTTFQQMWISKQEY 362
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 12/121 (9%)
Query: 436 GHIRETAFEVLFE---LDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLK 492
G+ R A E LF L L+ I +S++K D++K L NI+++GGT M PG+
Sbjct: 251 GNERFRAPEALFHPSVLGLESAGIDQTTYNSIMKCDVDVRKELYGNIVMSGGTTMFPGIA 310
Query: 493 YRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDA 552
R+ +E+ L S K K+ P + Y W+GG+I A+ ++ + I K
Sbjct: 311 ERMQKEITALAPS-SMKVKIIA--------PPERKYSVWIGGSILASLTTFQQMWISKQE 361
Query: 553 Y 553
Y
Sbjct: 362 Y 362
>pdb|3B63|E Chain E, Actin Filament Model In The Extended Form Of Acromsomal
Bundle In The Limulus Sperm
pdb|3B63|H Chain H, Actin Filament Model In The Extended Form Of Acromsomal
Bundle In The Limulus Sperm
pdb|3B63|J Chain J, Actin Filament Model In The Extended Form Of Acromsomal
Bundle In The Limulus Sperm
pdb|3B63|K Chain K, Actin Filament Model In The Extended Form Of Acromsomal
Bundle In The Limulus Sperm
pdb|3B63|N Chain N, Actin Filament Model In The Extended Form Of Acromsomal
Bundle In The Limulus Sperm
Length = 365
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 88/392 (22%), Positives = 150/392 (38%), Gaps = 75/392 (19%)
Query: 737 TGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL------RNLYEYKDADDLYGLL 790
T +V D GS K G G P+ S V P + ++ Y +A G+L
Sbjct: 1 TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 60
Query: 791 I-------------EFIRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFK 833
+ + KI F+ +P++ ++ E+ L P R + +++F+
Sbjct: 61 TLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFE 120
Query: 834 HYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQS 893
+ V ++ ++SL G TG+VLD G +P+YEG + A L L G
Sbjct: 121 TFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAG--- 177
Query: 894 VESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT-----TMERSAE 948
R L +K L VT + E I+ DIK C+V M +A
Sbjct: 178 -----RDLTDYLMKILTERGYSFVTTAERE-----IVRDIKEKLCYVALDFENEMATAAS 227
Query: 949 IAAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETAFEVLFELDLDMLNI 996
++ ++ P G + + N + + P S I ET + + + D+D
Sbjct: 228 SSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDID---- 283
Query: 997 ATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHE 1056
I D + S G T +P + R +++ L + + IK
Sbjct: 284 --IRKDLYANNVMSGG---TTMYP---GIADRMQKEITALAPST------MKIKIIA--- 326
Query: 1057 FPAKENYVAWLGGAIFAATESYNKRAIQKDVY 1088
P + Y W+GG+I A+ ++ + I K Y
Sbjct: 327 -PPERKYSVWIGGSILASLSTFQQMWITKQEY 357
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 90/406 (22%), Positives = 159/406 (39%), Gaps = 72/406 (17%)
Query: 21 TGVVLDIGSKYTKYGIFGSFQPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL 80
T +V D GS K G G P+ V I + G+ K S V D +K
Sbjct: 1 TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK---DSYVGDEAQSK- 56
Query: 81 RNLYEYKDADDLYGLLIEF--IRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLA 134
R + K + +G++ + + KI F+ +P++ ++ E+ L P R +
Sbjct: 57 RGILTLKYPIE-HGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMT 115
Query: 135 KVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSL 194
+++F+ + V ++ ++SL G TG+VLD G +P+YEG + A L L
Sbjct: 116 QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDL 175
Query: 195 GGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCF 254
G+ + ++ +K L VT + E I+ DIK C+
Sbjct: 176 AGRDLTDYL-----------------MKILTERGYSFVTTAERE-----IVRDIKEKLCY 213
Query: 255 VT-----TMERSAEIAAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETA 297
V M +A ++ ++ P G + + N + + P S I ET
Sbjct: 214 VALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETT 273
Query: 298 FEVLFELDLDMLNIATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNI 357
+ + + D+D I D + S G T +P + R +++ L +
Sbjct: 274 YNSIMKCDID------IRKDLYANNVMSGG---TTMYP---GIADRMQKEITALAPST-- 319
Query: 358 CCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVY 403
+ IK P + Y W+GG+I A+ ++ + I K Y
Sbjct: 320 ----MKIKIIA----PPERKYSVWIGGSILASLSTFQQMWITKQEY 357
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 10/114 (8%)
Query: 440 ETAFEVLFELDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLLQEL 499
ET F+ F + ++ I +S++K D++K L N +++GGT M PG+ R+ +E+
Sbjct: 254 ETLFQPSF-IGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEI 312
Query: 500 RTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAY 553
L S + IK P + Y W+GG+I A+ ++ + I K Y
Sbjct: 313 TALAPS-----TMKIKIIA----PPERKYSVWIGGSILASLSTFQQMWITKQEY 357
>pdb|3G37|O Chain O, Cryo-Em Structure Of Actin Filament In The Presence Of
Phosphate
pdb|3G37|P Chain P, Cryo-Em Structure Of Actin Filament In The Presence Of
Phosphate
pdb|3G37|Q Chain Q, Cryo-Em Structure Of Actin Filament In The Presence Of
Phosphate
pdb|3G37|R Chain R, Cryo-Em Structure Of Actin Filament In The Presence Of
Phosphate
pdb|3G37|S Chain S, Cryo-Em Structure Of Actin Filament In The Presence Of
Phosphate
pdb|3G37|T Chain T, Cryo-Em Structure Of Actin Filament In The Presence Of
Phosphate
pdb|3G37|U Chain U, Cryo-Em Structure Of Actin Filament In The Presence Of
Phosphate
pdb|3G37|V Chain V, Cryo-Em Structure Of Actin Filament In The Presence Of
Phosphate
pdb|3G37|W Chain W, Cryo-Em Structure Of Actin Filament In The Presence Of
Phosphate
pdb|3G37|X Chain X, Cryo-Em Structure Of Actin Filament In The Presence Of
Phosphate
pdb|3G37|Y Chain Y, Cryo-Em Structure Of Actin Filament In The Presence Of
Phosphate
pdb|3G37|Z Chain Z, Cryo-Em Structure Of Actin Filament In The Presence Of
Phosphate
Length = 376
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 88/392 (22%), Positives = 150/392 (38%), Gaps = 75/392 (19%)
Query: 737 TGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL------RNLYEYKDADDLYGLL 790
T +V D GS K G G P+ S V P + ++ Y +A G+L
Sbjct: 7 TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 66
Query: 791 I-------------EFIRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFK 833
+ + KI F+ +P++ ++ E+ L P R + +++F+
Sbjct: 67 TLKYPIEXGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFE 126
Query: 834 HYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQS 893
+ V ++ ++SL G TG+VLD G +P+YEG + A L L G
Sbjct: 127 TFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAG--- 183
Query: 894 VESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT-----TMERSAE 948
R L +K L VT + E I+ DIK C+V M +A
Sbjct: 184 -----RDLTDYLMKILTERGYSFVTTAERE-----IVRDIKEKLCYVALDFENEMATAAS 233
Query: 949 IAAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETAFEVLFELDLDMLNI 996
++ ++ P G + + N + + P S I ET + + + D+D
Sbjct: 234 SSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDID---- 289
Query: 997 ATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHE 1056
I D + S G T +P + R +++ L + + IK
Sbjct: 290 --IRKDLYANNVMSGG---TTMYP---GIADRMQKEITALAPST------MKIKIIA--- 332
Query: 1057 FPAKENYVAWLGGAIFAATESYNKRAIQKDVY 1088
P + Y W+GG+I A+ ++ + I K Y
Sbjct: 333 -PPERKYSVWIGGSILASLSTFQQMWITKQEY 363
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 90/411 (21%), Positives = 156/411 (37%), Gaps = 78/411 (18%)
Query: 19 EKTGVVLDIGSKYTKYGIFGSFQPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTN 78
E T +V D GS K G G P+ V I + G+ K S V D +
Sbjct: 5 ETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK---DSYVGDEAQS 61
Query: 79 KLRNLYEYK---------DADDLYGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVW 129
K R + K + DD+ + F+ +P++ ++ E+ L P
Sbjct: 62 K-RGILTLKYPIEXGIITNWDDMEKIW----HHTFYNELRVAPEEHPTLLTEAPLNPKAN 116
Query: 130 RNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAW 189
R + +++F+ + V ++ ++SL G TG+VLD G +P+YEG + A
Sbjct: 117 REKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAI 176
Query: 190 KDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIK 249
L L G+ + ++ +K L VT + E I+ DIK
Sbjct: 177 MRLDLAGRDLTDYL-----------------MKILTERGYSFVTTAERE-----IVRDIK 214
Query: 250 VCSCFVT-----TMERSAEIAAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGH 292
C+V M +A ++ ++ P G + + N + + P S
Sbjct: 215 EKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAG 274
Query: 293 IRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLV 352
I ET + + + D+D I D + S G T +P + R +++ L
Sbjct: 275 IHETTYNSIMKCDID------IRKDLYANNVMSGG---TTMYP---GIADRMQKEITALA 322
Query: 353 GWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVY 403
+ + IK P + Y W+GG+I A+ ++ + I K Y
Sbjct: 323 PST------MKIKIIA----PPERKYSVWIGGSILASLSTFQQMWITKQEY 363
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 10/114 (8%)
Query: 440 ETAFEVLFELDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLLQEL 499
ET F+ F + ++ I +S++K D++K L N +++GGT M PG+ R+ +E+
Sbjct: 260 ETLFQPSF-IGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEI 318
Query: 500 RTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAY 553
L S + IK P + Y W+GG+I A+ ++ + I K Y
Sbjct: 319 TALAPS-----TMKIKIIA----PPERKYSVWIGGSILASLSTFQQMWITKQEY 363
>pdb|1QZ5|A Chain A, Structure Of Rabbit Actin In Complex With Kabiramide C
pdb|1QZ6|A Chain A, Structure Of Rabbit Actin In Complex With Jaspisamide A
pdb|1S22|A Chain A, Absolute Stereochemistry Of Ulapualide A
pdb|1Y64|A Chain A, Bni1p Formin Homology 2 Domain Complexed With Atp-actin
pdb|1YXQ|A Chain A, Crystal Structure Of Actin In Complex With Swinholide A
pdb|1YXQ|B Chain B, Crystal Structure Of Actin In Complex With Swinholide A
pdb|2A3Z|A Chain A, Ternary Complex Of The Wh2 Domain Of Wasp With Actin-Dnase I
pdb|2A40|A Chain A, Ternary Complex Of The Wh2 Domain Of Wave With Actin-Dnase I
pdb|2A40|D Chain D, Ternary Complex Of The Wh2 Domain Of Wave With Actin-Dnase I
pdb|2A41|A Chain A, Ternary Complex Of The Wh2 Domain Of Wip With Actin-Dnase I
pdb|2A42|A Chain A, Actin-Dnase I Complex
pdb|2ASO|A Chain A, Structure Of Rabbit Actin In Complex With Sphinxolide B
pdb|1WUA|A Chain A, The Structure Of Aplyronine A-Actin Complex
pdb|2FXU|A Chain A, X-Ray Structure Of Bistramide A- Actin Complex At 1.35 A
Resolution.
pdb|2D1K|A Chain A, Ternary Complex Of The Wh2 Domain Of Mim With Actin-Dnase I
pdb|2HMP|A Chain A, Uncomplexed Actin Cleaved With Protease Ecp32
pdb|2HMP|B Chain B, Uncomplexed Actin Cleaved With Protease Ecp32
pdb|2Q0U|A Chain A, Structure Of Pectenotoxin-2 And Latrunculin B Bound To Actin
pdb|1J6Z|A Chain A, Uncomplexed Actin
pdb|1LOT|B Chain B, Crystal Structure Of The Complex Of Actin With Vitamin
D-Binding Protein
pdb|1MA9|B Chain B, Crystal Structure Of The Complex Of Human Vitamin D Binding
Protein And Rabbit Muscle Actin
pdb|1NWK|A Chain A, Crystal Structure Of Monomeric Actin In The Atp State
pdb|2Q97|A Chain A, Complex Of Mammalian Actin With Toxofilin From Toxoplasma
Gondii
pdb|2PAV|A Chain A, Ternary Complex Of Profilin-Actin With The Last Poly-Pro Of
Human Vasp
pdb|2VCP|A Chain A, Crystal Structure Of N-wasp Vc Domain In Complex With
Skeletal Actin
pdb|2VCP|B Chain B, Crystal Structure Of N-wasp Vc Domain In Complex With
Skeletal Actin
pdb|2ZWH|A Chain A, Model For The F-Actin Structure
pdb|3HBT|A Chain A, The Structure Of Native G-Actin
pdb|3M3N|A Chain A, Structure Of A Longitudinal Actin Dimer Assembled By Tandem
W Domains
pdb|3M3N|B Chain B, Structure Of A Longitudinal Actin Dimer Assembled By Tandem
W Domains
pdb|3M1F|A Chain A, Crosslinked Complex Of Actin With First W Domain Of Vibrio
Parahaemolyticus Vopl
pdb|3MFP|A Chain A, Atomic Model Of F-Actin Based On A 6.6 Angstrom Resolution
Cryoem Map
pdb|4A7F|A Chain A, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm
3)
pdb|4A7F|D Chain D, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm
3)
pdb|4A7F|E Chain E, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm
3)
pdb|4A7F|F Chain F, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm
3)
pdb|4A7F|I Chain I, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm
3)
pdb|4A7H|A Chain A, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm
2)
pdb|4A7H|D Chain D, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm
2)
pdb|4A7H|E Chain E, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm
2)
pdb|4A7H|F Chain F, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm
2)
pdb|4A7H|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm
2)
pdb|4A7L|A Chain A, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm
1)
pdb|4A7L|D Chain D, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm
1)
pdb|4A7L|E Chain E, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm
1)
pdb|4A7L|F Chain F, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm
1)
pdb|4A7L|I Chain I, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm
1)
pdb|4A7N|A Chain A, Structure Of Bare F-Actin Filaments Obtained From The Same
Sample As The Actin-Tropomyosin-Myosin Complex
pdb|4A7N|B Chain B, Structure Of Bare F-Actin Filaments Obtained From The Same
Sample As The Actin-Tropomyosin-Myosin Complex
pdb|4A7N|C Chain C, Structure Of Bare F-Actin Filaments Obtained From The Same
Sample As The Actin-Tropomyosin-Myosin Complex
pdb|4A7N|D Chain D, Structure Of Bare F-Actin Filaments Obtained From The Same
Sample As The Actin-Tropomyosin-Myosin Complex
pdb|4A7N|E Chain E, Structure Of Bare F-Actin Filaments Obtained From The Same
Sample As The Actin-Tropomyosin-Myosin Complex
pdb|4H03|B Chain B, Crystal Structure Of Nad+-ia-actin Complex
Length = 375
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 88/392 (22%), Positives = 150/392 (38%), Gaps = 75/392 (19%)
Query: 737 TGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL------RNLYEYKDADDLYGLL 790
T +V D GS K G G P+ S V P + ++ Y +A G+L
Sbjct: 6 TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 65
Query: 791 I-------------EFIRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFK 833
+ + KI F+ +P++ ++ E+ L P R + +++F+
Sbjct: 66 TLKYPIEXGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFE 125
Query: 834 HYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQS 893
+ V ++ ++SL G TG+VLD G +P+YEG + A L L G
Sbjct: 126 TFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAG--- 182
Query: 894 VESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT-----TMERSAE 948
R L +K L VT + E I+ DIK C+V M +A
Sbjct: 183 -----RDLTDYLMKILTERGYSFVTTAERE-----IVRDIKEKLCYVALDFENEMATAAS 232
Query: 949 IAAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETAFEVLFELDLDMLNI 996
++ ++ P G + + N + + P S I ET + + + D+D
Sbjct: 233 SSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDID---- 288
Query: 997 ATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHE 1056
I D + S G T +P + R +++ L + + IK
Sbjct: 289 --IRKDLYANNVMSGG---TTMYP---GIADRMQKEITALAPST------MKIKIIA--- 331
Query: 1057 FPAKENYVAWLGGAIFAATESYNKRAIQKDVY 1088
P + Y W+GG+I A+ ++ + I K Y
Sbjct: 332 -PPERKYSVWIGGSILASLSTFQQMWITKQEY 362
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 90/411 (21%), Positives = 156/411 (37%), Gaps = 78/411 (18%)
Query: 19 EKTGVVLDIGSKYTKYGIFGSFQPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTN 78
E T +V D GS K G G P+ V I + G+ K S V D +
Sbjct: 4 ETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK---DSYVGDEAQS 60
Query: 79 KLRNLYEYK---------DADDLYGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVW 129
K R + K + DD+ + F+ +P++ ++ E+ L P
Sbjct: 61 K-RGILTLKYPIEXGIITNWDDMEKIW----HHTFYNELRVAPEEHPTLLTEAPLNPKAN 115
Query: 130 RNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAW 189
R + +++F+ + V ++ ++SL G TG+VLD G +P+YEG + A
Sbjct: 116 REKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAI 175
Query: 190 KDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIK 249
L L G+ + ++ +K L VT + E I+ DIK
Sbjct: 176 MRLDLAGRDLTDYL-----------------MKILTERGYSFVTTAERE-----IVRDIK 213
Query: 250 VCSCFVT-----TMERSAEIAAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGH 292
C+V M +A ++ ++ P G + + N + + P S
Sbjct: 214 EKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAG 273
Query: 293 IRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLV 352
I ET + + + D+D I D + S G T +P + R +++ L
Sbjct: 274 IHETTYNSIMKCDID------IRKDLYANNVMSGG---TTMYP---GIADRMQKEITALA 321
Query: 353 GWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVY 403
+ + IK P + Y W+GG+I A+ ++ + I K Y
Sbjct: 322 PST------MKIKIIA----PPERKYSVWIGGSILASLSTFQQMWITKQEY 362
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 10/114 (8%)
Query: 440 ETAFEVLFELDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLLQEL 499
ET F+ F + ++ I +S++K D++K L N +++GGT M PG+ R+ +E+
Sbjct: 259 ETLFQPSF-IGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEI 317
Query: 500 RTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAY 553
L S + IK P + Y W+GG+I A+ ++ + I K Y
Sbjct: 318 TALAPS-----TMKIKIIA----PPERKYSVWIGGSILASLSTFQQMWITKQEY 362
>pdb|4B1V|A Chain A, Structure Of The Phactr1 Rpel-N Domain Bound To G-Actin
pdb|4B1V|B Chain B, Structure Of The Phactr1 Rpel-N Domain Bound To G-Actin
pdb|4B1Z|A Chain A, Structure Of The Phactr1 Rpel Domain Bound To G-Actin
pdb|4B1Z|B Chain B, Structure Of The Phactr1 Rpel Domain Bound To G-Actin
pdb|4B1Z|C Chain C, Structure Of The Phactr1 Rpel Domain Bound To G-Actin
pdb|4B1Z|D Chain D, Structure Of The Phactr1 Rpel Domain Bound To G-Actin
pdb|4B1Z|E Chain E, Structure Of The Phactr1 Rpel Domain Bound To G-Actin
pdb|4B1Z|F Chain F, Structure Of The Phactr1 Rpel Domain Bound To G-Actin
Length = 376
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 88/392 (22%), Positives = 150/392 (38%), Gaps = 75/392 (19%)
Query: 737 TGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL------RNLYEYKDADDLYGLL 790
T +V D GS K G G P+ S V P + ++ Y +A G+L
Sbjct: 7 TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 66
Query: 791 I-------------EFIRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFK 833
+ + KI F+ +P++ ++ E+ L P R + +++F+
Sbjct: 67 TLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFE 126
Query: 834 HYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQS 893
+ V ++ ++SL G TG+VLD G +P+YEG + A L L G
Sbjct: 127 TFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAG--- 183
Query: 894 VESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT-----TMERSAE 948
R L +K L VT + E I+ DIK C+V M +A
Sbjct: 184 -----RDLTDYLMKILTERGYSFVTTAERE-----IVRDIKEKLCYVALDFENEMATAAS 233
Query: 949 IAAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETAFEVLFELDLDMLNI 996
++ ++ P G + + N + + P S I ET + + + D+D
Sbjct: 234 SSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDID---- 289
Query: 997 ATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHE 1056
I D + S G T +P + R +++ L + + IK
Sbjct: 290 --IRKDLYANNVMSGG---TTMYP---GIADRMQKEITALAPST------MKIKIIA--- 332
Query: 1057 FPAKENYVAWLGGAIFAATESYNKRAIQKDVY 1088
P + Y W+GG+I A+ ++ + I K Y
Sbjct: 333 -PPERKYSVWIGGSILASLSTFQQMWITKQEY 363
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 91/408 (22%), Positives = 160/408 (39%), Gaps = 72/408 (17%)
Query: 19 EKTGVVLDIGSKYTKYGIFGSFQPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTN 78
E T +V D GS K G G P+ V I + G+ K S V D +
Sbjct: 5 ETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK---DSYVGDEAQS 61
Query: 79 KLRNLYEYKDADDLYGLLIEF--IRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNT 132
K R + K + +G++ + + KI F+ +P++ ++ E+ L P R
Sbjct: 62 K-RGILTLKYPIE-HGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREK 119
Query: 133 LAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDL 192
+ +++F+ + V ++ ++SL G TG+VLD G +P+YEG + A L
Sbjct: 120 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL 179
Query: 193 SLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCS 252
L G+ + ++ +K L VT + E I+ DIK
Sbjct: 180 DLAGRDLTDYL-----------------MKILTERGYSFVTTAERE-----IVRDIKEKL 217
Query: 253 CFVT-----TMERSAEIAAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRE 295
C+V M +A ++ ++ P G + + N + + P S I E
Sbjct: 218 CYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHE 277
Query: 296 TAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWS 355
T + + + D+D I D + S G T +P + R +++ L +
Sbjct: 278 TTYNSIMKCDID------IRKDLYANNVMSGG---TTMYP---GIADRMQKEITALAPST 325
Query: 356 NICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVY 403
+ IK P + Y W+GG+I A+ ++ + I K Y
Sbjct: 326 ------MKIKIIA----PPERKYSVWIGGSILASLSTFQQMWITKQEY 363
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 10/114 (8%)
Query: 440 ETAFEVLFELDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLLQEL 499
ET F+ F + ++ I +S++K D++K L N +++GGT M PG+ R+ +E+
Sbjct: 260 ETLFQPSF-IGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEI 318
Query: 500 RTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAY 553
L S K K+ P + Y W+GG+I A+ ++ + I K Y
Sbjct: 319 TALAPS-TMKIKIIA--------PPERKYSVWIGGSILASLSTFQQMWITKQEY 363
>pdb|1KXP|A Chain A, Crystal Structure Of Human Vitamin D-binding Protein In
Complex With Skeletal Actin
pdb|1M8Q|7 Chain 7, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|8 Chain 8, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|9 Chain 9, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|V Chain V, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|W Chain W, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|X Chain X, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|Y Chain Y, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|Z Chain Z, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|0 Chain 0, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|1 Chain 1, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|2 Chain 2, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|3 Chain 3, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|4 Chain 4, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|5 Chain 5, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|1 Chain 1, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|2 Chain 2, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|3 Chain 3, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|4 Chain 4, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|5 Chain 5, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|6 Chain 6, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|7 Chain 7, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|8 Chain 8, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|9 Chain 9, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|V Chain V, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|W Chain W, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|X Chain X, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|Y Chain Y, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|Z Chain Z, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|1 Chain 1, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|2 Chain 2, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|3 Chain 3, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|4 Chain 4, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|5 Chain 5, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|6 Chain 6, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|7 Chain 7, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|8 Chain 8, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|9 Chain 9, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|V Chain V, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|W Chain W, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|X Chain X, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|Y Chain Y, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|Z Chain Z, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|1 Chain 1, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|2 Chain 2, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|3 Chain 3, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|4 Chain 4, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|5 Chain 5, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|6 Chain 6, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|7 Chain 7, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|8 Chain 8, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|9 Chain 9, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|V Chain V, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|W Chain W, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|X Chain X, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|Y Chain Y, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|Z Chain Z, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|1 Chain 1, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|2 Chain 2, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|3 Chain 3, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|4 Chain 4, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|5 Chain 5, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|6 Chain 6, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|7 Chain 7, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|8 Chain 8, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|9 Chain 9, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|V Chain V, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|W Chain W, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|X Chain X, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|Y Chain Y, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|Z Chain Z, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|0 Chain 0, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|1 Chain 1, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|2 Chain 2, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|3 Chain 3, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|4 Chain 4, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|5 Chain 5, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|7 Chain 7, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|8 Chain 8, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|9 Chain 9, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|V Chain V, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|W Chain W, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|X Chain X, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|Y Chain Y, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|Z Chain Z, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|0 Chain 0, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|1 Chain 1, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|2 Chain 2, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|3 Chain 3, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|4 Chain 4, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|5 Chain 5, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|7 Chain 7, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|8 Chain 8, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|9 Chain 9, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|V Chain V, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|W Chain W, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|X Chain X, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|Y Chain Y, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|Z Chain Z, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|0 Chain 0, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|1 Chain 1, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|2 Chain 2, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|3 Chain 3, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|4 Chain 4, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|5 Chain 5, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|7 Chain 7, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|8 Chain 8, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|9 Chain 9, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|V Chain V, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|W Chain W, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|X Chain X, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|Y Chain Y, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|Z Chain Z, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|1 Chain 1, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|2 Chain 2, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|3 Chain 3, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|4 Chain 4, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|5 Chain 5, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|6 Chain 6, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|7 Chain 7, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|8 Chain 8, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|9 Chain 9, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|V Chain V, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|W Chain W, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|X Chain X, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|Y Chain Y, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|Z Chain Z, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|0 Chain 0, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|1 Chain 1, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|2 Chain 2, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|3 Chain 3, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|4 Chain 4, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|5 Chain 5, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|6 Chain 6, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|7 Chain 7, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|8 Chain 8, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|V Chain V, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|W Chain W, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|X Chain X, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|Y Chain Y, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|Z Chain Z, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|1 Chain 1, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|2 Chain 2, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|3 Chain 3, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|4 Chain 4, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|5 Chain 5, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|6 Chain 6, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|7 Chain 7, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|8 Chain 8, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|9 Chain 9, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|V Chain V, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|W Chain W, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|X Chain X, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|Y Chain Y, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|Z Chain Z, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1H1V|A Chain A, Gelsolin G4-G6ACTIN COMPLEX
pdb|1RDW|X Chain X, Actin Crystal Dynamics: Structural Implications For F-Actin
Nucleation, Polymerization And Branching Mediated By The
Anti-Parallel Dimer
pdb|1RFQ|A Chain A, Actin Crystal Dynamics: Structural Implications For F-Actin
Nucleation, Polymerization And Branching Mediated By The
Anti-Parallel Dimer
pdb|1RFQ|B Chain B, Actin Crystal Dynamics: Structural Implications For F-Actin
Nucleation, Polymerization And Branching Mediated By The
Anti-Parallel Dimer
pdb|2A5X|A Chain A, Crystal Structure Of A Cross-Linked Actin Dimer
pdb|2ASM|A Chain A, Structure Of Rabbit Actin In Complex With Reidispongiolide A
pdb|2ASP|A Chain A, Structure Of Rabbit Actin In Complex With Reidispongiolide C
pdb|2FF3|B Chain B, Crystal Structure Of Gelsolin Domain 1:n-Wasp V2 Motif
Hybrid In Complex With Actin
pdb|2FF6|A Chain A, Crystal Structure Of Gelsolin Domain 1:ciboulot Domain 2
Hybrid In Complex With Actin
pdb|2Q1N|A Chain A, Actin Dimer Cross-Linked Between Residues 41 And 374
pdb|2Q1N|B Chain B, Actin Dimer Cross-Linked Between Residues 41 And 374
pdb|2Q31|A Chain A, Actin Dimer Cross-linked Between Residues 41 And 374 And
Proteolytically Cleaved By Subtilisin Between Residues 47
And 48.
pdb|2Q31|B Chain B, Actin Dimer Cross-linked Between Residues 41 And 374 And
Proteolytically Cleaved By Subtilisin Between Residues 47
And 48.
pdb|2Q36|A Chain A, Actin Dimer Cross-Linked Between Residues 191 And 374 And
Complexed With Kabiramide C
pdb|2Q0R|A Chain A, Structure Of Pectenotoxin-2 Bound To Actin
pdb|3BUZ|B Chain B, Crystal Structure Of Ia-Btad-Actin Complex
pdb|2Y83|O Chain O, Actin Filament Pointed End
pdb|2Y83|P Chain P, Actin Filament Pointed End
pdb|2Y83|Q Chain Q, Actin Filament Pointed End
pdb|2Y83|R Chain R, Actin Filament Pointed End
pdb|2Y83|S Chain S, Actin Filament Pointed End
pdb|2Y83|T Chain T, Actin Filament Pointed End
pdb|3TPQ|A Chain A, Crystal Structure Of Wild-Type Mal Rpel Domain In Complex
With Five G- Actins
pdb|3TPQ|B Chain B, Crystal Structure Of Wild-Type Mal Rpel Domain In Complex
With Five G- Actins
pdb|3TPQ|C Chain C, Crystal Structure Of Wild-Type Mal Rpel Domain In Complex
With Five G- Actins
pdb|3TPQ|D Chain D, Crystal Structure Of Wild-Type Mal Rpel Domain In Complex
With Five G- Actins
pdb|3TPQ|E Chain E, Crystal Structure Of Wild-Type Mal Rpel Domain In Complex
With Five G- Actins
pdb|3SJH|A Chain A, Crystal Structure Of A Chimera Containing The N-Terminal
Domain (Residues 8-29) Of Drosophila Ciboulot And The
C-Terminal Domain (Residues 18-44) Of Bovine
Thymosin-Beta4, Bound To G-Actin-Atp- Latrunculin A
pdb|3U8X|A Chain A, Crystal Structure Of A Chimera Containing The N-Terminal
Domain (Residues 8-29) Of Drosophila Ciboulot And The
C-Terminal Domain (Residues 18-44) Of Bovine
Thymosin-Beta4, Bound To G-Actin-Atp
pdb|3U8X|C Chain C, Crystal Structure Of A Chimera Containing The N-Terminal
Domain (Residues 8-29) Of Drosophila Ciboulot And The
C-Terminal Domain (Residues 18-44) Of Bovine
Thymosin-Beta4, Bound To G-Actin-Atp
pdb|3U9D|A Chain A, Crystal Structure Of A Chimera Containing The N-Terminal
Domain (Residues 8-24) Of Drosophila Ciboulot And The
C-Terminal Domain (Residues 13-44) Of Bovine
Thymosin-Beta4, Bound To G-Actin-Atp
pdb|3U9D|C Chain C, Crystal Structure Of A Chimera Containing The N-Terminal
Domain (Residues 8-24) Of Drosophila Ciboulot And The
C-Terminal Domain (Residues 13-44) Of Bovine
Thymosin-Beta4, Bound To G-Actin-Atp
pdb|3U9Z|A Chain A, Crystal Structure Between Actin And A Protein Construct
Containing The First Beta-Thymosin Domain Of Drosophila
Ciboulot (Residues 2-58) With The Three Mutations
N26dQ27KD28S
pdb|3UE5|A Chain A, Ecp-Cleaved Actin In Complex With Spir Domain D
pdb|4GY2|B Chain B, Crystal Structure Of Apo-ia-actin Complex
pdb|4H0T|B Chain B, Crystal Structure Of Ia-adpr-actin Complex
pdb|4H0V|B Chain B, Crystal Structure Of Nad+-ia(e378s)-actin Complex
pdb|4H0X|B Chain B, Crystal Structure Of Nad+-ia(e380a)-actin Complex
pdb|4H0Y|B Chain B, Crystal Structure Of Nad+-ia(e380s)-actin Complex
Length = 375
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 88/392 (22%), Positives = 150/392 (38%), Gaps = 75/392 (19%)
Query: 737 TGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL------RNLYEYKDADDLYGLL 790
T +V D GS K G G P+ S V P + ++ Y +A G+L
Sbjct: 6 TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 65
Query: 791 I-------------EFIRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFK 833
+ + KI F+ +P++ ++ E+ L P R + +++F+
Sbjct: 66 TLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFE 125
Query: 834 HYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQS 893
+ V ++ ++SL G TG+VLD G +P+YEG + A L L G
Sbjct: 126 TFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAG--- 182
Query: 894 VESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT-----TMERSAE 948
R L +K L VT + E I+ DIK C+V M +A
Sbjct: 183 -----RDLTDYLMKILTERGYSFVTTAERE-----IVRDIKEKLCYVALDFENEMATAAS 232
Query: 949 IAAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETAFEVLFELDLDMLNI 996
++ ++ P G + + N + + P S I ET + + + D+D
Sbjct: 233 SSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDID---- 288
Query: 997 ATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHE 1056
I D + S G T +P + R +++ L + + IK
Sbjct: 289 --IRKDLYANNVMSGG---TTMYP---GIADRMQKEITALAPST------MKIKIIA--- 331
Query: 1057 FPAKENYVAWLGGAIFAATESYNKRAIQKDVY 1088
P + Y W+GG+I A+ ++ + I K Y
Sbjct: 332 -PPERKYSVWIGGSILASLSTFQQMWITKQEY 362
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 91/408 (22%), Positives = 160/408 (39%), Gaps = 72/408 (17%)
Query: 19 EKTGVVLDIGSKYTKYGIFGSFQPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTN 78
E T +V D GS K G G P+ V I + G+ K S V D +
Sbjct: 4 ETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK---DSYVGDEAQS 60
Query: 79 KLRNLYEYKDADDLYGLLIEF--IRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNT 132
K R + K + +G++ + + KI F+ +P++ ++ E+ L P R
Sbjct: 61 K-RGILTLKYPIE-HGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREK 118
Query: 133 LAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDL 192
+ +++F+ + V ++ ++SL G TG+VLD G +P+YEG + A L
Sbjct: 119 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL 178
Query: 193 SLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCS 252
L G+ + ++ +K L VT + E I+ DIK
Sbjct: 179 DLAGRDLTDYL-----------------MKILTERGYSFVTTAERE-----IVRDIKEKL 216
Query: 253 CFVT-----TMERSAEIAAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRE 295
C+V M +A ++ ++ P G + + N + + P S I E
Sbjct: 217 CYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHE 276
Query: 296 TAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWS 355
T + + + D+D I D + S G T +P + R +++ L +
Sbjct: 277 TTYNSIMKCDID------IRKDLYANNVMSGG---TTMYP---GIADRMQKEITALAPST 324
Query: 356 NICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVY 403
+ IK P + Y W+GG+I A+ ++ + I K Y
Sbjct: 325 ------MKIKIIA----PPERKYSVWIGGSILASLSTFQQMWITKQEY 362
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 10/114 (8%)
Query: 440 ETAFEVLFELDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLLQEL 499
ET F+ F + ++ I +S++K D++K L N +++GGT M PG+ R+ +E+
Sbjct: 259 ETLFQPSF-IGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEI 317
Query: 500 RTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAY 553
L S K K+ P + Y W+GG+I A+ ++ + I K Y
Sbjct: 318 TALAPS-TMKIKIIA--------PPERKYSVWIGGSILASLSTFQQMWITKQEY 362
>pdb|2GWJ|A Chain A, Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form
pdb|2GWK|A Chain A, Spvb Adp-Ribosylated Actin: Orthorhombic Crystal Form
pdb|2GWK|B Chain B, Spvb Adp-Ribosylated Actin: Orthorhombic Crystal Form
Length = 371
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 88/392 (22%), Positives = 150/392 (38%), Gaps = 75/392 (19%)
Query: 737 TGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL------RNLYEYKDADDLYGLL 790
T +V D GS K G G P+ S V P + ++ Y +A G+L
Sbjct: 2 TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 61
Query: 791 I-------------EFIRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFK 833
+ + KI F+ +P++ ++ E+ L P R + +++F+
Sbjct: 62 TLKYPIEXGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFE 121
Query: 834 HYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQS 893
+ V ++ ++SL G TG+VLD G +P+YEG + A L L G
Sbjct: 122 TFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAG--- 178
Query: 894 VESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT-----TMERSAE 948
R L +K L VT + E I+ DIK C+V M +A
Sbjct: 179 -----RDLTDYLMKILTERGYSFVTTAERE-----IVRDIKEKLCYVALDFENEMATAAS 228
Query: 949 IAAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETAFEVLFELDLDMLNI 996
++ ++ P G + + N + + P S I ET + + + D+D
Sbjct: 229 SSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDID---- 284
Query: 997 ATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHE 1056
I D + S G T +P + R +++ L + + IK
Sbjct: 285 --IRKDLYANNVMSGG---TTMYP---GIADRMQKEITALAPST------MKIKIIA--- 327
Query: 1057 FPAKENYVAWLGGAIFAATESYNKRAIQKDVY 1088
P + Y W+GG+I A+ ++ + I K Y
Sbjct: 328 -PPERKYSVWIGGSILASLSTFQQMWITKQEY 358
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 89/409 (21%), Positives = 155/409 (37%), Gaps = 78/409 (19%)
Query: 21 TGVVLDIGSKYTKYGIFGSFQPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL 80
T +V D GS K G G P+ V I + G+ K S V D +K
Sbjct: 2 TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK---DSYVGDEAQSK- 57
Query: 81 RNLYEYK---------DADDLYGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRN 131
R + K + DD+ + F+ +P++ ++ E+ L P R
Sbjct: 58 RGILTLKYPIEXGIITNWDDMEKIW----HHTFYNELRVAPEEHPTLLTEAPLNPKANRE 113
Query: 132 TLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKD 191
+ +++F+ + V ++ ++SL G TG+VLD G +P+YEG + A
Sbjct: 114 KMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMR 173
Query: 192 LSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVC 251
L L G+ + ++ +K L VT + E I+ DIK
Sbjct: 174 LDLAGRDLTDYL-----------------MKILTERGYSFVTTAERE-----IVRDIKEK 211
Query: 252 SCFVT-----TMERSAEIAAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIR 294
C+V M +A ++ ++ P G + + N + + P S I
Sbjct: 212 LCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIH 271
Query: 295 ETAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGW 354
ET + + + D+D I D + S G T +P + R +++ L
Sbjct: 272 ETTYNSIMKCDID------IRKDLYANNVMSGG---TTMYP---GIADRMQKEITALAPS 319
Query: 355 SNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVY 403
+ + IK P + Y W+GG+I A+ ++ + I K Y
Sbjct: 320 T------MKIKIIA----PPERKYSVWIGGSILASLSTFQQMWITKQEY 358
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 10/114 (8%)
Query: 440 ETAFEVLFELDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLLQEL 499
ET F+ F + ++ I +S++K D++K L N +++GGT M PG+ R+ +E+
Sbjct: 255 ETLFQPSF-IGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEI 313
Query: 500 RTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAY 553
L S K K+ P + Y W+GG+I A+ ++ + I K Y
Sbjct: 314 TALAPS-TMKIKIIA--------PPERKYSVWIGGSILASLSTFQQMWITKQEY 358
>pdb|1C0G|A Chain A, Crystal Structure Of 1:1 Complex Between Gelsolin Segment 1
And A DictyosteliumTETRAHYMENA CHIMERA ACTIN (MUTANT 228:
Q228kT229AA230YE360H)
Length = 375
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 90/391 (23%), Positives = 151/391 (38%), Gaps = 75/391 (19%)
Query: 738 GVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDP-HTNKL-----RNLYEYKDADDLYGLLI 791
+V+D GS K G G P+ S V P HT + ++ Y +A G+L
Sbjct: 7 ALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRGILT 66
Query: 792 -------------EFIRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKH 834
+ + KI F+ +P++ +++ E+ L P R + +++F+
Sbjct: 67 LKYPIEXGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 126
Query: 835 YEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSV 894
+ ++ ++SL G TG+V+D G + +P+YEG + A L L G
Sbjct: 127 FNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAG---- 182
Query: 895 ESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIK-----VCSCFVTTMERSAEI 949
R L +K L T + E I+ DIK V F M+ A
Sbjct: 183 ----RDLTDYMMKILTERGYSFTTTAERE-----IVRDIKEKLAYVALDFEAEMKAYASS 233
Query: 950 AAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETAFEVLFELDLDMLNIA 997
+A ++ P G + + N + + P S I ET + + + D+D
Sbjct: 234 SALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVD----- 288
Query: 998 TIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEF 1057
I D +V S G T FP + R ++L L + IK
Sbjct: 289 -IRKDLYGNVVLSGG---TTMFP---GIADRMNKELTAL------APSTMKIKIIA---- 331
Query: 1058 PAKENYVAWLGGAIFAATESYNKRAIQKDVY 1088
P + Y W+GG+I A+ ++ + I K Y
Sbjct: 332 PPERKYSVWIGGSILASLSTFQQMWISKHEY 362
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 86/395 (21%), Positives = 156/395 (39%), Gaps = 72/395 (18%)
Query: 43 KGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDP-HTNKL-----RNLYEYKDADDLYGLL 96
+ +V+D GS K G G P+ S V P HT + ++ Y +A G+L
Sbjct: 6 QALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRGIL 65
Query: 97 I-------------EFIRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFK 139
+ + KI F+ +P++ +++ E+ L P R + +++F+
Sbjct: 66 TLKYPIEXGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 125
Query: 140 HYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSV 199
+ ++ ++SL G TG+V+D G + +P+YEG + A L L G+ +
Sbjct: 126 TFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 185
Query: 200 EAHI-----RRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCF 254
++ RG S + ++ +IK E + ++ ++K +
Sbjct: 186 TDYMMKILTERGYSFTTTAEREIVRDIK------------EKLAYVALDFEAEMKAYAS- 232
Query: 255 VTTMERSAE------IAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDM 308
+ +E+S E I N + P P G + S I ET + + + D+D
Sbjct: 233 SSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGME---SAGIHETTYNSIMKCDVD- 288
Query: 309 LNIATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFK 368
I D +V S G T FP + R ++L L + IK
Sbjct: 289 -----IRKDLYGNVVLSGG---TTMFP---GIADRMNKELTAL------APSTMKIKIIA 331
Query: 369 FHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVY 403
P + Y W+GG+I A+ ++ + I K Y
Sbjct: 332 ----PPERKYSVWIGGSILASLSTFQQMWISKHEY 362
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 12/121 (9%)
Query: 436 GHIRETAFEVLFE---LDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLK 492
G+ R E LF+ L ++ I +S++K D++K L N++L+GGT M PG+
Sbjct: 251 GNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIA 310
Query: 493 YRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDA 552
R+ +EL L S + IK P + Y W+GG+I A+ ++ + I K
Sbjct: 311 DRMNKELTALAPS-----TMKIKIIA----PPERKYSVWIGGSILASLSTFQQMWISKHE 361
Query: 553 Y 553
Y
Sbjct: 362 Y 362
>pdb|1DEJ|A Chain A, Crystal Structure Of A DictyosteliumTETRAHYMENA CHIMERA
Actin (Mutant 646: Q228kT229AA230YA231KS232EE360H) IN
Complex With Human Gelsolin Segment 1
Length = 375
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 90/391 (23%), Positives = 152/391 (38%), Gaps = 75/391 (19%)
Query: 738 GVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDP-HTNKL-----RNLYEYKDADDLYGLLI 791
+V+D GS K G G P+ S V P HT + ++ Y +A G+L
Sbjct: 7 ALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRGILT 66
Query: 792 -------------EFIRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKH 834
+ + KI F+ +P++ +++ E+ L P R + +++F+
Sbjct: 67 LKYPIEXGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 126
Query: 835 YEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSV 894
+ ++ ++SL G TG+V+D G + +P+YEG + A L L G
Sbjct: 127 FNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAG---- 182
Query: 895 ESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIK-----VCSCFVTTMERSAEI 949
R L +K L T + E I+ DIK V F M+ E
Sbjct: 183 ----RDLTDYMMKILTERGYSFTTTAERE-----IVRDIKEKLAYVALDFEAEMKAYKES 233
Query: 950 AAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETAFEVLFELDLDMLNIA 997
+A ++ P G + + N + + P S I ET + + + D+D
Sbjct: 234 SALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVD----- 288
Query: 998 TIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEF 1057
I D +V S G T FP + R ++L L + + IK
Sbjct: 289 -IRKDLYGNVVLSGG---TTMFP---GIADRMNKELTALAPST------MKIKIIA---- 331
Query: 1058 PAKENYVAWLGGAIFAATESYNKRAIQKDVY 1088
P + Y W+GG+I A+ ++ + I K Y
Sbjct: 332 PPERKYSVWIGGSILASLSTFQQMWISKHEY 362
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 87/401 (21%), Positives = 156/401 (38%), Gaps = 84/401 (20%)
Query: 43 KGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDP-HTNKL-----RNLYEYKDADDLYGLL 96
+ +V+D GS K G G P+ S V P HT + ++ Y +A G+L
Sbjct: 6 QALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRGIL 65
Query: 97 I-------------EFIRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFK 139
+ + KI F+ +P++ +++ E+ L P R + +++F+
Sbjct: 66 TLKYPIEXGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 125
Query: 140 HYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSV 199
+ ++ ++SL G TG+V+D G + +P+YEG + A L L G+ +
Sbjct: 126 TFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 185
Query: 200 EAHI-----RRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCF 254
++ RG S + ++ +IK E L+ V F
Sbjct: 186 TDYMMKILTERGYSFTTTAEREIVRDIK---------------EKLA-------YVALDF 223
Query: 255 VTTMERSAEIAAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETAFEVLF 302
M+ E +A ++ P G + + N + + P S I ET + +
Sbjct: 224 EAEMKAYKESSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIM 283
Query: 303 ELDLDMLNIATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKL 362
+ D+D I D +V S G T FP + R ++L L + +
Sbjct: 284 KCDVD------IRKDLYGNVVLSGG---TTMFP---GIADRMNKELTALAPST------M 325
Query: 363 FIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVY 403
IK P + Y W+GG+I A+ ++ + I K Y
Sbjct: 326 KIKIIA----PPERKYSVWIGGSILASLSTFQQMWISKHEY 362
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 12/121 (9%)
Query: 436 GHIRETAFEVLFE---LDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLK 492
G+ R E LF+ L ++ I +S++K D++K L N++L+GGT M PG+
Sbjct: 251 GNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIA 310
Query: 493 YRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDA 552
R+ +EL L S K K+ P + Y W+GG+I A+ ++ + I K
Sbjct: 311 DRMNKELTALAPS-TMKIKIIA--------PPERKYSVWIGGSILASLSTFQQMWISKHE 361
Query: 553 Y 553
Y
Sbjct: 362 Y 362
>pdb|2W49|D Chain D, Isometrically Contracting Insect Asynchronous Flight Muscle
pdb|2W49|E Chain E, Isometrically Contracting Insect Asynchronous Flight Muscle
pdb|2W49|F Chain F, Isometrically Contracting Insect Asynchronous Flight Muscle
pdb|2W49|G Chain G, Isometrically Contracting Insect Asynchronous Flight Muscle
pdb|2W49|H Chain H, Isometrically Contracting Insect Asynchronous Flight Muscle
pdb|2W49|I Chain I, Isometrically Contracting Insect Asynchronous Flight Muscle
pdb|2W49|J Chain J, Isometrically Contracting Insect Asynchronous Flight Muscle
pdb|2W49|K Chain K, Isometrically Contracting Insect Asynchronous Flight Muscle
pdb|2W49|L Chain L, Isometrically Contracting Insect Asynchronous Flight Muscle
pdb|2W49|M Chain M, Isometrically Contracting Insect Asynchronous Flight Muscle
pdb|2W49|N Chain N, Isometrically Contracting Insect Asynchronous Flight Muscle
pdb|2W49|O Chain O, Isometrically Contracting Insect Asynchronous Flight Muscle
pdb|2W49|P Chain P, Isometrically Contracting Insect Asynchronous Flight Muscle
pdb|2W49|Q Chain Q, Isometrically Contracting Insect Asynchronous Flight Muscle
pdb|2W49|R Chain R, Isometrically Contracting Insect Asynchronous Flight Muscle
pdb|2W49|S Chain S, Isometrically Contracting Insect Asynchronous Flight Muscle
pdb|2W4U|D Chain D, Isometrically Contracting Insect Asynchronous Flight Muscle
Quick Frozen After A Length Step
pdb|2W4U|E Chain E, Isometrically Contracting Insect Asynchronous Flight Muscle
Quick Frozen After A Length Step
pdb|2W4U|F Chain F, Isometrically Contracting Insect Asynchronous Flight Muscle
Quick Frozen After A Length Step
pdb|2W4U|G Chain G, Isometrically Contracting Insect Asynchronous Flight Muscle
Quick Frozen After A Length Step
pdb|2W4U|H Chain H, Isometrically Contracting Insect Asynchronous Flight Muscle
Quick Frozen After A Length Step
pdb|2W4U|I Chain I, Isometrically Contracting Insect Asynchronous Flight Muscle
Quick Frozen After A Length Step
pdb|2W4U|J Chain J, Isometrically Contracting Insect Asynchronous Flight Muscle
Quick Frozen After A Length Step
pdb|2W4U|K Chain K, Isometrically Contracting Insect Asynchronous Flight Muscle
Quick Frozen After A Length Step
pdb|2W4U|L Chain L, Isometrically Contracting Insect Asynchronous Flight Muscle
Quick Frozen After A Length Step
pdb|2W4U|M Chain M, Isometrically Contracting Insect Asynchronous Flight Muscle
Quick Frozen After A Length Step
pdb|2W4U|N Chain N, Isometrically Contracting Insect Asynchronous Flight Muscle
Quick Frozen After A Length Step
pdb|2W4U|O Chain O, Isometrically Contracting Insect Asynchronous Flight Muscle
Quick Frozen After A Length Step
pdb|2W4U|P Chain P, Isometrically Contracting Insect Asynchronous Flight Muscle
Quick Frozen After A Length Step
pdb|2W4U|Q Chain Q, Isometrically Contracting Insect Asynchronous Flight Muscle
Quick Frozen After A Length Step
pdb|2W4U|R Chain R, Isometrically Contracting Insect Asynchronous Flight Muscle
Quick Frozen After A Length Step
pdb|2W4U|S Chain S, Isometrically Contracting Insect Asynchronous Flight Muscle
Quick Frozen After A Length Step
Length = 372
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 88/392 (22%), Positives = 150/392 (38%), Gaps = 75/392 (19%)
Query: 737 TGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL------RNLYEYKDADDLYGLL 790
T +V D GS K G G P+ S V P + ++ Y +A G+L
Sbjct: 6 TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 65
Query: 791 I-------------EFIRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFK 833
+ + KI F+ +P++ ++ E+ L P R + +++F+
Sbjct: 66 TLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFE 125
Query: 834 HYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQS 893
+ V ++ ++SL G TG+VLD G +P+YEG + A L L G
Sbjct: 126 TFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAG--- 182
Query: 894 VESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT-----TMERSAE 948
R L +K L VT + E I+ DIK C+V M +A
Sbjct: 183 -----RDLTDYLMKILTERGYSFVTTAERE-----IVRDIKEKLCYVALDFENEMATAAS 232
Query: 949 IAAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETAFEVLFELDLDMLNI 996
++ ++ P G + + N + + P S I ET + + + D+D
Sbjct: 233 SSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDID---- 288
Query: 997 ATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHE 1056
I D + S G T +P + R +++ L + + IK
Sbjct: 289 --IRKDLYANNVMSGG---TTMYP---GIADRMQKEITALAPST------MKIKIIA--- 331
Query: 1057 FPAKENYVAWLGGAIFAATESYNKRAIQKDVY 1088
P + Y W+GG+I A+ ++ + I K Y
Sbjct: 332 -PPERKYSVWIGGSILASLSTFQQMWITKQEY 362
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 91/408 (22%), Positives = 160/408 (39%), Gaps = 72/408 (17%)
Query: 19 EKTGVVLDIGSKYTKYGIFGSFQPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTN 78
E T +V D GS K G G P+ V I + G+ K S V D +
Sbjct: 4 ETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK---DSYVGDEAQS 60
Query: 79 KLRNLYEYKDADDLYGLLIEF--IRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNT 132
K R + K + +G++ + + KI F+ +P++ ++ E+ L P R
Sbjct: 61 K-RGILTLKYPIE-HGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREK 118
Query: 133 LAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDL 192
+ +++F+ + V ++ ++SL G TG+VLD G +P+YEG + A L
Sbjct: 119 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL 178
Query: 193 SLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCS 252
L G+ + ++ +K L VT + E I+ DIK
Sbjct: 179 DLAGRDLTDYL-----------------MKILTERGYSFVTTAERE-----IVRDIKEKL 216
Query: 253 CFVT-----TMERSAEIAAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRE 295
C+V M +A ++ ++ P G + + N + + P S I E
Sbjct: 217 CYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHE 276
Query: 296 TAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWS 355
T + + + D+D I D + S G T +P + R +++ L +
Sbjct: 277 TTYNSIMKCDID------IRKDLYANNVMSGG---TTMYP---GIADRMQKEITALAPST 324
Query: 356 NICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVY 403
+ IK P + Y W+GG+I A+ ++ + I K Y
Sbjct: 325 ------MKIKIIA----PPERKYSVWIGGSILASLSTFQQMWITKQEY 362
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 10/114 (8%)
Query: 440 ETAFEVLFELDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLLQEL 499
ET F+ F + ++ I +S++K D++K L N +++GGT M PG+ R+ +E+
Sbjct: 259 ETLFQPSF-IGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEI 317
Query: 500 RTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAY 553
L S + IK P + Y W+GG+I A+ ++ + I K Y
Sbjct: 318 TALAPS-----TMKIKIIA----PPERKYSVWIGGSILASLSTFQQMWITKQEY 362
>pdb|1ATN|A Chain A, Atomic Structure Of The Actin:dnase I Complex
Length = 373
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 88/392 (22%), Positives = 150/392 (38%), Gaps = 75/392 (19%)
Query: 737 TGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL------RNLYEYKDADDLYGLL 790
T +V D GS K G G P+ S V P + ++ Y +A G+L
Sbjct: 7 TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 66
Query: 791 I-------------EFIRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFK 833
+ + KI F+ +P++ ++ E+ L P R + +++F+
Sbjct: 67 TLKYPIEXGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFE 126
Query: 834 HYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQS 893
+ V ++ ++SL G TG+VLD G +P+YEG + A L L G
Sbjct: 127 TFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAG--- 183
Query: 894 VESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT-----TMERSAE 948
R L +K L VT + E I+ DIK C+V M +A
Sbjct: 184 -----RDLTDYLMKILTERGYSFVTTAERE-----IVRDIKEKLCYVALDFENEMATAAS 233
Query: 949 IAAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETAFEVLFELDLDMLNI 996
++ ++ P G + + N + + P S I ET + + + D+D
Sbjct: 234 SSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDID---- 289
Query: 997 ATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHE 1056
I D + S G T +P + R +++ L + + IK
Sbjct: 290 --IRKDLYANNVMSGG---TTMYP---GIADRMQKEITALAPST------MKIKIIA--- 332
Query: 1057 FPAKENYVAWLGGAIFAATESYNKRAIQKDVY 1088
P + Y W+GG+I A+ ++ + I K Y
Sbjct: 333 -PPERKYSVWIGGSILASLSTFQQMWITKQEY 363
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 90/411 (21%), Positives = 156/411 (37%), Gaps = 78/411 (18%)
Query: 19 EKTGVVLDIGSKYTKYGIFGSFQPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTN 78
E T +V D GS K G G P+ V I + G+ K S V D +
Sbjct: 5 ETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK---DSYVGDEAQS 61
Query: 79 KLRNLYEYK---------DADDLYGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVW 129
K R + K + DD+ + F+ +P++ ++ E+ L P
Sbjct: 62 K-RGILTLKYPIEXGIITNWDDMEKIW----HHTFYNELRVAPEEHPTLLTEAPLNPKAN 116
Query: 130 RNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAW 189
R + +++F+ + V ++ ++SL G TG+VLD G +P+YEG + A
Sbjct: 117 REKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAI 176
Query: 190 KDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIK 249
L L G+ + ++ +K L VT + E I+ DIK
Sbjct: 177 MRLDLAGRDLTDYL-----------------MKILTERGYSFVTTAERE-----IVRDIK 214
Query: 250 VCSCFVT-----TMERSAEIAAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGH 292
C+V M +A ++ ++ P G + + N + + P S
Sbjct: 215 EKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAG 274
Query: 293 IRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLV 352
I ET + + + D+D I D + S G T +P + R +++ L
Sbjct: 275 IHETTYNSIMKCDID------IRKDLYANNVMSGG---TTMYP---GIADRMQKEITALA 322
Query: 353 GWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVY 403
+ + IK P + Y W+GG+I A+ ++ + I K Y
Sbjct: 323 PST------MKIKIIA----PPERKYSVWIGGSILASLSTFQQMWITKQEY 363
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 10/114 (8%)
Query: 440 ETAFEVLFELDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLLQEL 499
ET F+ F + ++ I +S++K D++K L N +++GGT M PG+ R+ +E+
Sbjct: 260 ETLFQPSF-IGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEI 318
Query: 500 RTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAY 553
L S + IK P + Y W+GG+I A+ ++ + I K Y
Sbjct: 319 TALAPS-----TMKIKIIA----PPERKYSVWIGGSILASLSTFQQMWITKQEY 363
>pdb|3M6G|A Chain A, Crystal Structure Of Actin In Complex With Lobophorolide
pdb|3M6G|B Chain B, Crystal Structure Of Actin In Complex With Lobophorolide
Length = 371
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 88/392 (22%), Positives = 150/392 (38%), Gaps = 75/392 (19%)
Query: 737 TGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL------RNLYEYKDADDLYGLL 790
T +V D GS K G G P+ S V P + ++ Y +A G+L
Sbjct: 6 TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 65
Query: 791 I-------------EFIRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFK 833
+ + KI F+ +P++ ++ E+ L P R + +++F+
Sbjct: 66 TLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFE 125
Query: 834 HYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQS 893
+ V ++ ++SL G TG+VLD G +P+YEG + A L L G
Sbjct: 126 TFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAG--- 182
Query: 894 VESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT-----TMERSAE 948
R L +K L VT + E I+ DIK C+V M +A
Sbjct: 183 -----RDLTDYLMKILTERGYSFVTTAERE-----IVRDIKEKLCYVALDFENEMATAAS 232
Query: 949 IAAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETAFEVLFELDLDMLNI 996
++ ++ P G + + N + + P S I ET + + + D+D
Sbjct: 233 SSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDID---- 288
Query: 997 ATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHE 1056
I D + S G T +P + R +++ L + + IK
Sbjct: 289 --IRKDLYANNVMSGG---TTMYP---GIADRMQKEITALAPST------MKIKIIA--- 331
Query: 1057 FPAKENYVAWLGGAIFAATESYNKRAIQKDVY 1088
P + Y W+GG+I A+ ++ + I K Y
Sbjct: 332 -PPERKYSVWIGGSILASLSTFQQMWITKQEY 362
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 91/408 (22%), Positives = 160/408 (39%), Gaps = 72/408 (17%)
Query: 19 EKTGVVLDIGSKYTKYGIFGSFQPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTN 78
E T +V D GS K G G P+ V I + G+ K S V D +
Sbjct: 4 ETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK---DSYVGDEAQS 60
Query: 79 KLRNLYEYKDADDLYGLLIEF--IRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNT 132
K R + K + +G++ + + KI F+ +P++ ++ E+ L P R
Sbjct: 61 K-RGILTLKYPIE-HGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREK 118
Query: 133 LAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDL 192
+ +++F+ + V ++ ++SL G TG+VLD G +P+YEG + A L
Sbjct: 119 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL 178
Query: 193 SLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCS 252
L G+ + ++ +K L VT + E I+ DIK
Sbjct: 179 DLAGRDLTDYL-----------------MKILTERGYSFVTTAERE-----IVRDIKEKL 216
Query: 253 CFVT-----TMERSAEIAAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRE 295
C+V M +A ++ ++ P G + + N + + P S I E
Sbjct: 217 CYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHE 276
Query: 296 TAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWS 355
T + + + D+D I D + S G T +P + R +++ L +
Sbjct: 277 TTYNSIMKCDID------IRKDLYANNVMSGG---TTMYP---GIADRMQKEITALAPST 324
Query: 356 NICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVY 403
+ IK P + Y W+GG+I A+ ++ + I K Y
Sbjct: 325 ------MKIKIIA----PPERKYSVWIGGSILASLSTFQQMWITKQEY 362
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 10/114 (8%)
Query: 440 ETAFEVLFELDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLLQEL 499
ET F+ F + ++ I +S++K D++K L N +++GGT M PG+ R+ +E+
Sbjct: 259 ETLFQPSF-IGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEI 317
Query: 500 RTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAY 553
L S + IK P + Y W+GG+I A+ ++ + I K Y
Sbjct: 318 TALAPS-----TMKIKIIA----PPERKYSVWIGGSILASLSTFQQMWITKQEY 362
>pdb|3B63|C Chain C, Actin Filament Model In The Extended Form Of Acromsomal
Bundle In The Limulus Sperm
pdb|3B63|I Chain I, Actin Filament Model In The Extended Form Of Acromsomal
Bundle In The Limulus Sperm
Length = 365
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 88/389 (22%), Positives = 154/389 (39%), Gaps = 69/389 (17%)
Query: 737 TGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL------RNLYEYKDADDLYGLL 790
+V+D GS K G G P+ S V P + ++ Y +A G+L
Sbjct: 1 AALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGIMVGMGQKDSYVGDEAQSKRGIL 60
Query: 791 I-------------EFIRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFK 833
+ + KI F+ +P++ +++ E+ + P R + +++F+
Sbjct: 61 TLRYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKSNREKMTQIMFE 120
Query: 834 HYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQS 893
+ V + ++SL + G TG+VLD G ++P+Y G + A + L G
Sbjct: 121 TFNVPAFYVSIQAVLSLYSSGRTTGIVLDSGDGVTHVVPIYAGFSLPHAILRIDLAG--- 177
Query: 894 VESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT-TMERSAEIAAK 952
R L +K L T + E I+ DIK C+V E+ + AA+
Sbjct: 178 -----RDLTDYLMKILSERGYSFSTTAERE-----IVRDIKEKLCYVALDFEQEMQTAAQ 227
Query: 953 NPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFE---LDLDMLNIATIILDSLLSVAS 1009
+ + Y L +G+ I + G+ R A E LF L L+ I +S++
Sbjct: 228 SSSIEKS----YELPDGQVITI-GNERFRAPEALFHPSVLGLESAGIDQTTYNSIMK-CD 281
Query: 1010 SDGREE----------TQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPA 1059
D R+E T FP + R +++ L S + +K P
Sbjct: 282 VDVRKELYGNIVMSGGTTMFP---GIAERMQKEITALAPSS------MKVKIIA----PP 328
Query: 1060 KENYVAWLGGAIFAATESYNKRAIQKDVY 1088
+ Y W+GG+I A+ ++ + I K Y
Sbjct: 329 ERKYSVWIGGSILASLTTFQQMWISKQEY 357
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 88/402 (21%), Positives = 160/402 (39%), Gaps = 64/402 (15%)
Query: 21 TGVVLDIGSKYTKYGIFGSFQPKGVVLDIGSKYTKYGIF-GSFQPKGFIKSQVKDPHTN- 78
+V+D GS K G G P+ V I + GI G Q ++ + +
Sbjct: 1 AALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGIMVGMGQKDSYVGDEAQSKRGIL 60
Query: 79 KLRNLYEY---KDADDLYGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAK 135
LR E+ + DD+ + F+ +P++ +++ E+ + P R + +
Sbjct: 61 TLRYPIEHGIVTNWDDMEKIW----HHTFYNELRVAPEEHPVLLTEAPMNPKSNREKMTQ 116
Query: 136 VLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLG 195
++F+ + V + ++SL + G TG+VLD G ++P+Y G + A + L
Sbjct: 117 IMFETFNVPAFYVSIQAVLSLYSSGRTTGIVLDSGDGVTHVVPIYAGFSLPHAILRIDLA 176
Query: 196 GQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFV 255
G+ + ++ +K L T + E I+ DIK C+V
Sbjct: 177 GRDLTDYL-----------------MKILSERGYSFSTTAERE-----IVRDIKEKLCYV 214
Query: 256 T-TMERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFE---LDLDMLNI 311
E+ + AA++ + Y L +G+ I + G+ R A E LF L L+ I
Sbjct: 215 ALDFEQEMQTAAQSSSIEKS----YELPDGQVITI-GNERFRAPEALFHPSVLGLESAGI 269
Query: 312 ATIILDSLLSVASSDGREE----------TQYFPFRCWVNTRTPEKLCCLVGWSNICCYK 361
+S++ D R+E T FP + R +++ L S
Sbjct: 270 DQTTYNSIMK-CDVDVRKELYGNIVMSGGTTMFP---GIAERMQKEITALAPSS------ 319
Query: 362 LFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVY 403
+ +K P + Y W+GG+I A+ ++ + I K Y
Sbjct: 320 MKVKIIA----PPERKYSVWIGGSILASLTTFQQMWISKQEY 357
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 12/121 (9%)
Query: 436 GHIRETAFEVLFE---LDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLK 492
G+ R A E LF L L+ I +S++K D++K L NI+++GGT M PG+
Sbjct: 246 GNERFRAPEALFHPSVLGLESAGIDQTTYNSIMKCDVDVRKELYGNIVMSGGTTMFPGIA 305
Query: 493 YRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDA 552
R+ +E+ L S K K+ P + Y W+GG+I A+ ++ + I K
Sbjct: 306 ERMQKEITALAPS-SMKVKIIA--------PPERKYSVWIGGSILASLTTFQQMWISKQE 356
Query: 553 Y 553
Y
Sbjct: 357 Y 357
>pdb|3MN5|A Chain A, Structures Of Actin-Bound Wh2 Domains Of Spire And The
Implication For Filament Nucleation
Length = 359
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 88/378 (23%), Positives = 152/378 (40%), Gaps = 63/378 (16%)
Query: 737 TGVVLDIGSKYTKYGIFGSFQPKGFIKS---QVKDPHTNKLRNLYEYKDADDLYGLLIEF 793
T +V D GS K G G P+ S +V D +K R + K + +G++ +
Sbjct: 6 TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRVGDEAQSK-RGILTLKYPIE-HGIITNW 63
Query: 794 --IRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHL 847
+ KI F+ +P++ ++ E+ L P R + +++F+ + V ++ +
Sbjct: 64 DDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAV 123
Query: 848 VSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIK 907
+SL G TG+VLD G +P+YEG + A L L G R L +K
Sbjct: 124 LSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAG--------RDLTDYLMK 175
Query: 908 ALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT-----TMERSAEIAAKNPDHKYPSGF 962
L VT + E I+ DIK C+V M +A ++ ++ P G
Sbjct: 176 ILTERGYSFVTTAERE-----IVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQ 230
Query: 963 MYPLKNGK-KIP-----------VSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASS 1010
+ + N + + P S I ET + + + D+D I D + S
Sbjct: 231 VITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDID------IRKDLYANNVMS 284
Query: 1011 DGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGA 1070
G T +P + R +++ L + + IK P + Y W+GG+
Sbjct: 285 GG---TTMYP---GIADRMQKEITALAPST------MKIKIIA----PPERKYSVWIGGS 328
Query: 1071 IFAATESYNKRAIQKDVY 1088
I A+ ++ + I K Y
Sbjct: 329 ILASLSTFQQMWITKQEY 346
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 86/402 (21%), Positives = 156/402 (38%), Gaps = 76/402 (18%)
Query: 19 EKTGVVLDIGSKYTKYGIFGSFQPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTN 78
E T +V D GS K G G P+ V I + + Q K I + +K P +
Sbjct: 4 ETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGR-----VGDEAQSKRGILT-LKYPIEH 57
Query: 79 KLRNLYEYKDADDLYGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLF 138
+ + + D + ++ F+ +P++ ++ E+ L P R + +++F
Sbjct: 58 GI--ITNWDDMEKIW-------HHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMF 108
Query: 139 KHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQS 198
+ + V ++ ++SL G TG+VLD G +P+YEG + A L L G+
Sbjct: 109 ETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRD 168
Query: 199 VEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT-- 256
+ ++ +K L VT + E I+ DIK C+V
Sbjct: 169 LTDYL-----------------MKILTERGYSFVTTAERE-----IVRDIKEKLCYVALD 206
Query: 257 ---TMERSAEIAAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETAFEVL 301
M +A ++ ++ P G + + N + + P S I ET + +
Sbjct: 207 FENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSI 266
Query: 302 FELDLDMLNIATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYK 361
+ D+D I D + S G T +P + R +++ L +
Sbjct: 267 MKCDID------IRKDLYANNVMSGG---TTMYP---GIADRMQKEITALAPST------ 308
Query: 362 LFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVY 403
+ IK P + Y W+GG+I A+ ++ + I K Y
Sbjct: 309 MKIKIIA----PPERKYSVWIGGSILASLSTFQQMWITKQEY 346
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 10/114 (8%)
Query: 440 ETAFEVLFELDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLLQEL 499
ET F+ F + ++ I +S++K D++K L N +++GGT M PG+ R+ +E+
Sbjct: 243 ETLFQPSF-IGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEI 301
Query: 500 RTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAY 553
L S K K+ P + Y W+GG+I A+ ++ + I K Y
Sbjct: 302 TALAPS-TMKIKIIA--------PPERKYSVWIGGSILASLSTFQQMWITKQEY 346
>pdb|1LCU|A Chain A, Polylysine Induces An Antiparallel Actin Dimer That
Nucleates Filament Assembly: Crystal Structure At 3.5 A
Resolution
pdb|1LCU|B Chain B, Polylysine Induces An Antiparallel Actin Dimer That
Nucleates Filament Assembly: Crystal Structure At 3.5 A
Resolution
Length = 371
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 88/392 (22%), Positives = 149/392 (38%), Gaps = 75/392 (19%)
Query: 737 TGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLR------NLYEYKDADDLYGLL 790
T +V D GS K G G P+ S V P + + Y +A G+L
Sbjct: 2 TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVVMGQGDSYVGDEAQSKRGIL 61
Query: 791 I-------------EFIRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFK 833
+ + KI F+ +P++ ++ E+ L P R + +++F+
Sbjct: 62 TLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFE 121
Query: 834 HYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQS 893
+ V ++ ++SL G TG+VLD G +P+YEG + A L L G
Sbjct: 122 TFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAG--- 178
Query: 894 VESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT-----TMERSAE 948
R L +K L VT + E I+ DIK C+V M +A
Sbjct: 179 -----RDLTDYLMKILTERGYSFVTTAERE-----IVRDIKEKLCYVALDFENEMATAAS 228
Query: 949 IAAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETAFEVLFELDLDMLNI 996
++ ++ P G + + N + + P S I ET + + + D+D
Sbjct: 229 SSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDID---- 284
Query: 997 ATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHE 1056
I D + S G T +P + R +++ L + + IK
Sbjct: 285 --IRKDLYANNVMSGG---TTMYP---GIADRMQKEITALAPST------MKIKIIA--- 327
Query: 1057 FPAKENYVAWLGGAIFAATESYNKRAIQKDVY 1088
P + Y W+GG+I A+ ++ + I K Y
Sbjct: 328 -PPERKYSVWIGGSILASLSTFQQMWITKQEY 358
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 90/406 (22%), Positives = 159/406 (39%), Gaps = 72/406 (17%)
Query: 21 TGVVLDIGSKYTKYGIFGSFQPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL 80
T +V D GS K G G P+ V I + G+ G S V D +K
Sbjct: 2 TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVVM---GQGDSYVGDEAQSK- 57
Query: 81 RNLYEYKDADDLYGLLIEF--IRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLA 134
R + K + +G++ + + KI F+ +P++ ++ E+ L P R +
Sbjct: 58 RGILTLKYPIE-HGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMT 116
Query: 135 KVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSL 194
+++F+ + V ++ ++SL G TG+VLD G +P+YEG + A L L
Sbjct: 117 QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDL 176
Query: 195 GGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCF 254
G+ + ++ +K L VT + E I+ DIK C+
Sbjct: 177 AGRDLTDYL-----------------MKILTERGYSFVTTAERE-----IVRDIKEKLCY 214
Query: 255 VT-----TMERSAEIAAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETA 297
V M +A ++ ++ P G + + N + + P S I ET
Sbjct: 215 VALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETT 274
Query: 298 FEVLFELDLDMLNIATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNI 357
+ + + D+D I D + S G T +P + R +++ L +
Sbjct: 275 YNSIMKCDID------IRKDLYANNVMSGG---TTMYP---GIADRMQKEITALAPST-- 320
Query: 358 CCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVY 403
+ IK P + Y W+GG+I A+ ++ + I K Y
Sbjct: 321 ----MKIKIIA----PPERKYSVWIGGSILASLSTFQQMWITKQEY 358
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 10/114 (8%)
Query: 440 ETAFEVLFELDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLLQEL 499
ET F+ F + ++ I +S++K D++K L N +++GGT M PG+ R+ +E+
Sbjct: 255 ETLFQPSF-IGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEI 313
Query: 500 RTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAY 553
L S K K+ P + Y W+GG+I A+ ++ + I K Y
Sbjct: 314 TALAPS-TMKIKIIA--------PPERKYSVWIGGSILASLSTFQQMWITKQEY 358
>pdb|3B63|D Chain D, Actin Filament Model In The Extended Form Of Acromsomal
Bundle In The Limulus Sperm
Length = 357
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 88/390 (22%), Positives = 148/390 (37%), Gaps = 74/390 (18%)
Query: 738 GVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL------RNLYEYKDADDLYGLL- 790
+V D GS K G G P+ S V P + ++ Y +A G+L
Sbjct: 1 ALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 60
Query: 791 ----IEFI-----------RKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHY 835
IE I F+ +P++ ++ E+ L P R + +++F+ +
Sbjct: 61 LKYPIEGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETF 120
Query: 836 EVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVE 895
V ++ ++SL G TG+VLD G +P+YEG + A L L G
Sbjct: 121 NVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAG----- 175
Query: 896 SHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT-----TMERSAEIA 950
R L +K L VT + E I+ DIK C+V M +A +
Sbjct: 176 ---RDLTDYLMKILTERGYSFVTTAERE-----IVRDIKEKLCYVALDFENEMATAASSS 227
Query: 951 AKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETAFEVLFELDLDMLNIAT 998
+ ++ P G + + N + + P S I ET + + + D+D
Sbjct: 228 SLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDID------ 281
Query: 999 IILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFP 1058
I D + S G T +P + R +++ L + + IK P
Sbjct: 282 IRKDLYANNVMSGG---TTMYP---GIADRMQKEITALAPST------MKIKIIA----P 325
Query: 1059 AKENYVAWLGGAIFAATESYNKRAIQKDVY 1088
+ Y W+GG+I A+ ++ + I K Y
Sbjct: 326 PERKYSVWIGGSILASLSTFQQMWITKQEY 355
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 86/399 (21%), Positives = 150/399 (37%), Gaps = 83/399 (20%)
Query: 44 GVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL------RNLYEYKDADDLYGLL- 96
+V D GS K G G P+ S V P + ++ Y +A G+L
Sbjct: 1 ALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 60
Query: 97 ----IEFI-----------RKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHY 141
IE I F+ +P++ ++ E+ L P R + +++F+ +
Sbjct: 61 LKYPIEGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETF 120
Query: 142 EVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEA 201
V ++ ++SL G TG+VLD G +P+YEG + A L L G+ +
Sbjct: 121 NVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTD 180
Query: 202 HIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT----- 256
++ +K L VT + E I+ DIK C+V
Sbjct: 181 YL-----------------MKILTERGYSFVTTAERE-----IVRDIKEKLCYVALDFEN 218
Query: 257 TMERSAEIAAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETAFEVLFEL 304
M +A ++ ++ P G + + N + + P S I ET + + +
Sbjct: 219 EMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKC 278
Query: 305 DLDMLNIATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFI 364
D+D I D + S G T +P + R +++ L + + I
Sbjct: 279 DID------IRKDLYANNVMSGG---TTMYP---GIADRMQKEITALAPST------MKI 320
Query: 365 KNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVY 403
K P + Y W+GG+I A+ ++ + I K Y
Sbjct: 321 KIIA----PPERKYSVWIGGSILASLSTFQQMWITKQEY 355
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 10/114 (8%)
Query: 440 ETAFEVLFELDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLLQEL 499
ET F+ F + ++ I +S++K D++K L N +++GGT M PG+ R+ +E+
Sbjct: 252 ETLFQPSF-IGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEI 310
Query: 500 RTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAY 553
L S K K+ P + Y W+GG+I A+ ++ + I K Y
Sbjct: 311 TALAPS-TMKIKIIA--------PPERKYSVWIGGSILASLSTFQQMWITKQEY 355
>pdb|1D4X|A Chain A, Crystal Structure Of Caenorhabditis Elegans Mg-Atp Actin
Complexed With Human Gelsolin Segment 1 At 1.75 A
Resolution
Length = 375
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 85/394 (21%), Positives = 151/394 (38%), Gaps = 81/394 (20%)
Query: 738 GVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL------RNLYEYKDADDLYGLLI 791
+V+D GS K G G P+ S V P + ++ Y +A G+L
Sbjct: 7 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 66
Query: 792 -------------EFIRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKH 834
+ + KI F+ +P++ +++ E+ L P R + +++F+
Sbjct: 67 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 126
Query: 835 YEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSV 894
+ ++ ++SL G TG+VLD G +P+YEG + A L L G
Sbjct: 127 FNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPHAILRLDLAG---- 182
Query: 895 ESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFV-------------- 940
R L +K L T + E I+ DIK C+V
Sbjct: 183 ----RDLTDYLMKILTERGYSFTTTAERE-----IVRDIKEKLCYVALDFEQEMATAASS 233
Query: 941 TTMERSAE------IAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDML 994
+++E+S E I N + P P G + S I ET++ + + D+D+
Sbjct: 234 SSLEKSYELPDGQVITVGNERFRCPEAMFQPSFLGME---SAGIHETSYNSIMKCDIDIR 290
Query: 995 NIATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKF 1054
+ +++LS T +P + R +++ L + + IK
Sbjct: 291 K--DLYANTVLSGG-------TTMYP---GIADRMQKEITALAPST------MKIKIIA- 331
Query: 1055 HEFPAKENYVAWLGGAIFAATESYNKRAIQKDVY 1088
P + Y W+GG+I A+ ++ + I K Y
Sbjct: 332 ---PPERKYSVWIGGSILASLSTFQQMWISKQEY 362
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 88/411 (21%), Positives = 161/411 (39%), Gaps = 78/411 (18%)
Query: 19 EKTGVVLDIGSKYTKYGIFGSFQPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTN 78
E +V+D GS K G G P+ V I + G+ K S V D +
Sbjct: 4 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK---DSYVGDEAQS 60
Query: 79 KLRNLYEYKDADDLYGLLIEF--IRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNT 132
K R + K + +G++ + + KI F+ +P++ +++ E+ L P R
Sbjct: 61 K-RGILTLKYPIE-HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 118
Query: 133 LAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDL 192
+ +++F+ + ++ ++SL G TG+VLD G +P+YEG + A L
Sbjct: 119 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPHAILRL 178
Query: 193 SLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCS 252
L G+ + ++ +K L T + E I+ DIK
Sbjct: 179 DLAGRDLTDYL-----------------MKILTERGYSFTTTAERE-----IVRDIKEKL 216
Query: 253 CFV--------------TTMERSAE------IAAKNPDHKYPSGFMYPLKNGKKIPVSGH 292
C+V +++E+S E I N + P P G + S
Sbjct: 217 CYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNERFRCPEAMFQPSFLGME---SAG 273
Query: 293 IRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLV 352
I ET++ + + D+D+ + +++LS T +P + R +++ L
Sbjct: 274 IHETSYNSIMKCDIDIRK--DLYANTVLSGG-------TTMYP---GIADRMQKEITALA 321
Query: 353 GWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVY 403
+ + IK P + Y W+GG+I A+ ++ + I K Y
Sbjct: 322 PST------MKIKIIA----PPERKYSVWIGGSILASLSTFQQMWISKQEY 362
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 12/121 (9%)
Query: 436 GHIRETAFEVLFE---LDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLK 492
G+ R E +F+ L ++ I +S++K D++K L N +L+GGT M PG+
Sbjct: 251 GNERFRCPEAMFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIA 310
Query: 493 YRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDA 552
R+ +E+ L S + IK P + Y W+GG+I A+ ++ + I K
Sbjct: 311 DRMQKEITALAPS-----TMKIKIIA----PPERKYSVWIGGSILASLSTFQQMWISKQE 361
Query: 553 Y 553
Y
Sbjct: 362 Y 362
>pdb|2OAN|A Chain A, Structure Of Oxidized Beta-Actin
pdb|2OAN|B Chain B, Structure Of Oxidized Beta-Actin
pdb|2OAN|C Chain C, Structure Of Oxidized Beta-Actin
pdb|2OAN|D Chain D, Structure Of Oxidized Beta-Actin
Length = 375
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 83/391 (21%), Positives = 151/391 (38%), Gaps = 75/391 (19%)
Query: 738 GVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL------RNLYEYKDADDLYGLLI 791
+V+D GS K G G P+ S V P + ++ Y +A G+L
Sbjct: 7 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 66
Query: 792 -------------EFIRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKH 834
+ + KI F+ +P++ +++ E+ L P R + +++F+
Sbjct: 67 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 126
Query: 835 YEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSV 894
+ ++ ++SL G TG+V+D G +P+YEG + A L L G
Sbjct: 127 FNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAG---- 182
Query: 895 ESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT-----TMERSAEI 949
R L +K L T + E I+ DIK C+V M +A
Sbjct: 183 ----RDLTDYLMKILTERGYSFTTTAERE-----IVRDIKEKLCYVALDFEQEMATAASS 233
Query: 950 AAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETAFEVLFELDLDMLNIA 997
++ ++ P G + + N + + P S I ET F + + D+D+
Sbjct: 234 SSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESXGIHETTFNSIMKCDVDIRK-- 291
Query: 998 TIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEF 1057
+ +++LS T +P + R +++ L + + IK
Sbjct: 292 DLYANTVLSGG-------TTMYP---GIADRMQKEITALAPST------MKIKIIA---- 331
Query: 1058 PAKENYVAWLGGAIFAATESYNKRAIQKDVY 1088
P + Y W+GG+I A+ ++ + I K Y
Sbjct: 332 PPERKYSVWIGGSILASLSTFQQMWISKQEY 362
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 85/405 (20%), Positives = 160/405 (39%), Gaps = 72/405 (17%)
Query: 22 GVVLDIGSKYTKYGIFGSFQPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLR 81
+V+D GS K G G P+ V I + G+ K S V D +K R
Sbjct: 7 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK---DSYVGDEAQSK-R 62
Query: 82 NLYEYKDADDLYGLLIEF--IRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAK 135
+ K + +G++ + + KI F+ +P++ +++ E+ L P R + +
Sbjct: 63 GILTLKYPIE-HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 136 VLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLG 195
++F+ + ++ ++SL G TG+V+D G +P+YEG + A L L
Sbjct: 122 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 181
Query: 196 GQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFV 255
G+ + ++ +K L T + E I+ DIK C+V
Sbjct: 182 GRDLTDYL-----------------MKILTERGYSFTTTAERE-----IVRDIKEKLCYV 219
Query: 256 T-----TMERSAEIAAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETAF 298
M +A ++ ++ P G + + N + + P S I ET F
Sbjct: 220 ALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESXGIHETTF 279
Query: 299 EVLFELDLDMLNIATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNIC 358
+ + D+D+ + +++LS T +P + R +++ L +
Sbjct: 280 NSIMKCDVDIRK--DLYANTVLSGG-------TTMYP---GIADRMQKEITALAPST--- 324
Query: 359 CYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVY 403
+ IK P + Y W+GG+I A+ ++ + I K Y
Sbjct: 325 ---MKIKIIA----PPERKYSVWIGGSILASLSTFQQMWISKQEY 362
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 12/121 (9%)
Query: 436 GHIRETAFEVLFE---LDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLK 492
G+ R E LF+ L ++ I +S++K D++K L N +L+GGT M PG+
Sbjct: 251 GNERFRCPEALFQPSFLGMESXGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIA 310
Query: 493 YRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDA 552
R+ +E+ L S + IK P + Y W+GG+I A+ ++ + I K
Sbjct: 311 DRMQKEITALAPS-----TMKIKIIA----PPERKYSVWIGGSILASLSTFQQMWISKQE 361
Query: 553 Y 553
Y
Sbjct: 362 Y 362
>pdb|3U4L|A Chain A, Cryocooled Bovine Profilin:actin Crystal Structure To 2.4 A
Length = 375
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 83/391 (21%), Positives = 151/391 (38%), Gaps = 75/391 (19%)
Query: 738 GVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL------RNLYEYKDADDLYGLLI 791
+V+D GS K G G P+ S V P + ++ Y +A G+L
Sbjct: 7 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 66
Query: 792 -------------EFIRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKH 834
+ + KI F+ +P++ +++ E+ L P R + +++F+
Sbjct: 67 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 126
Query: 835 YEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSV 894
+ ++ ++SL G TG+V+D G +P+YEG + A L L G
Sbjct: 127 FNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAG---- 182
Query: 895 ESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT-----TMERSAEI 949
R L +K L T + E I+ DIK C+V M +A
Sbjct: 183 ----RDLTDYLMKILTERGYSFTTTAERE-----IVRDIKEKLCYVALDFEQEMATAASS 233
Query: 950 AAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETAFEVLFELDLDMLNIA 997
++ ++ P G + + N + + P S I ET F + + D+D+
Sbjct: 234 SSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRK-- 291
Query: 998 TIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEF 1057
+ +++LS T +P + R +++ L + + IK
Sbjct: 292 DLYANTVLSGG-------TTMYP---GIADRMQKEITALAPST------MKIKIIA---- 331
Query: 1058 PAKENYVAWLGGAIFAATESYNKRAIQKDVY 1088
P + Y W+GG+I A+ ++ + I K Y
Sbjct: 332 PPERKYSVWIGGSILASLSTFQQMWISKQEY 362
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 85/405 (20%), Positives = 160/405 (39%), Gaps = 72/405 (17%)
Query: 22 GVVLDIGSKYTKYGIFGSFQPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLR 81
+V+D GS K G G P+ V I + G+ K S V D +K R
Sbjct: 7 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK---DSYVGDEAQSK-R 62
Query: 82 NLYEYKDADDLYGLLIEF--IRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAK 135
+ K + +G++ + + KI F+ +P++ +++ E+ L P R + +
Sbjct: 63 GILTLKYPIE-HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 136 VLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLG 195
++F+ + ++ ++SL G TG+V+D G +P+YEG + A L L
Sbjct: 122 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 181
Query: 196 GQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFV 255
G+ + ++ +K L T + E I+ DIK C+V
Sbjct: 182 GRDLTDYL-----------------MKILTERGYSFTTTAERE-----IVRDIKEKLCYV 219
Query: 256 T-----TMERSAEIAAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETAF 298
M +A ++ ++ P G + + N + + P S I ET F
Sbjct: 220 ALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTF 279
Query: 299 EVLFELDLDMLNIATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNIC 358
+ + D+D+ + +++LS T +P + R +++ L +
Sbjct: 280 NSIMKCDVDIRK--DLYANTVLSGG-------TTMYP---GIADRMQKEITALAPST--- 324
Query: 359 CYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVY 403
+ IK P + Y W+GG+I A+ ++ + I K Y
Sbjct: 325 ---MKIKIIA----PPERKYSVWIGGSILASLSTFQQMWISKQEY 362
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 12/121 (9%)
Query: 436 GHIRETAFEVLFE---LDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLK 492
G+ R E LF+ L ++ I +S++K D++K L N +L+GGT M PG+
Sbjct: 251 GNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIA 310
Query: 493 YRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDA 552
R+ +E+ L S + IK P + Y W+GG+I A+ ++ + I K
Sbjct: 311 DRMQKEITALAPS-----TMKIKIIA----PPERKYSVWIGGSILASLSTFQQMWISKQE 361
Query: 553 Y 553
Y
Sbjct: 362 Y 362
>pdb|3B63|L Chain L, Actin Filament Model In The Extended Form Of Acromsomal
Bundle In The Limulus Sperm
pdb|3B63|M Chain M, Actin Filament Model In The Extended Form Of Acromsomal
Bundle In The Limulus Sperm
Length = 365
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 83/391 (21%), Positives = 151/391 (38%), Gaps = 75/391 (19%)
Query: 738 GVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL------RNLYEYKDADDLYGLLI 791
+V+D GS K G G P+ S V P + ++ Y +A G+L
Sbjct: 2 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 61
Query: 792 -------------EFIRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKH 834
+ + KI F+ +P++ +++ E+ L P R + +++F+
Sbjct: 62 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 121
Query: 835 YEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSV 894
+ ++ ++SL G TG+V+D G +P+YEG + A L L G
Sbjct: 122 FNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAG---- 177
Query: 895 ESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT-----TMERSAEI 949
R L +K L T + E I+ DIK C+V M +A
Sbjct: 178 ----RDLTDYLMKILTERGYSFTTTAERE-----IVRDIKEKLCYVALDFEQEMATAASS 228
Query: 950 AAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETAFEVLFELDLDMLNIA 997
++ ++ P G + + N + + P S I ET F + + D+D+
Sbjct: 229 SSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRK-- 286
Query: 998 TIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEF 1057
+ +++LS T +P + R +++ L + + IK
Sbjct: 287 DLYANTVLSGG-------TTMYP---GIADRMQKEITALAPST------MKIKIIA---- 326
Query: 1058 PAKENYVAWLGGAIFAATESYNKRAIQKDVY 1088
P + Y W+GG+I A+ ++ + I K Y
Sbjct: 327 PPERKYSVWIGGSILASLSTFQQMWISKQEY 357
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 85/405 (20%), Positives = 160/405 (39%), Gaps = 72/405 (17%)
Query: 22 GVVLDIGSKYTKYGIFGSFQPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLR 81
+V+D GS K G G P+ V I + G+ K S V D +K R
Sbjct: 2 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK---DSYVGDEAQSK-R 57
Query: 82 NLYEYKDADDLYGLLIEF--IRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAK 135
+ K + +G++ + + KI F+ +P++ +++ E+ L P R + +
Sbjct: 58 GILTLKYPIE-HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 116
Query: 136 VLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLG 195
++F+ + ++ ++SL G TG+V+D G +P+YEG + A L L
Sbjct: 117 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 176
Query: 196 GQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFV 255
G+ + ++ +K L T + E I+ DIK C+V
Sbjct: 177 GRDLTDYL-----------------MKILTERGYSFTTTAERE-----IVRDIKEKLCYV 214
Query: 256 T-----TMERSAEIAAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETAF 298
M +A ++ ++ P G + + N + + P S I ET F
Sbjct: 215 ALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTF 274
Query: 299 EVLFELDLDMLNIATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNIC 358
+ + D+D+ + +++LS T +P + R +++ L +
Sbjct: 275 NSIMKCDVDIRK--DLYANTVLSGG-------TTMYP---GIADRMQKEITALAPST--- 319
Query: 359 CYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVY 403
+ IK P + Y W+GG+I A+ ++ + I K Y
Sbjct: 320 ---MKIKIIA----PPERKYSVWIGGSILASLSTFQQMWISKQEY 357
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 12/121 (9%)
Query: 436 GHIRETAFEVLFE---LDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLK 492
G+ R E LF+ L ++ I +S++K D++K L N +L+GGT M PG+
Sbjct: 246 GNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIA 305
Query: 493 YRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDA 552
R+ +E+ L S + IK P + Y W+GG+I A+ ++ + I K
Sbjct: 306 DRMQKEITALAPS-----TMKIKIIA----PPERKYSVWIGGSILASLSTFQQMWISKQE 356
Query: 553 Y 553
Y
Sbjct: 357 Y 357
>pdb|2BTF|A Chain A, The Structure Of Crystalline Profilin-Beta-Actin
pdb|1HLU|A Chain A, Structure Of Bovine Beta-Actin-Profilin Complex With Actin
Bound Atp Phosphates Solvent Accessible
Length = 375
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 83/391 (21%), Positives = 151/391 (38%), Gaps = 75/391 (19%)
Query: 738 GVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL------RNLYEYKDADDLYGLLI 791
+V+D GS K G G P+ S V P + ++ Y +A G+L
Sbjct: 7 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 66
Query: 792 -------------EFIRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKH 834
+ + KI F+ +P++ +++ E+ L P R + +++F+
Sbjct: 67 LKYPIEXGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 126
Query: 835 YEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSV 894
+ ++ ++SL G TG+V+D G +P+YEG + A L L G
Sbjct: 127 FNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAG---- 182
Query: 895 ESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT-----TMERSAEI 949
R L +K L T + E I+ DIK C+V M +A
Sbjct: 183 ----RDLTDYLMKILTERGYSFTTTAERE-----IVRDIKEKLCYVALDFEQEMATAASS 233
Query: 950 AAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETAFEVLFELDLDMLNIA 997
++ ++ P G + + N + + P S I ET F + + D+D+
Sbjct: 234 SSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRK-- 291
Query: 998 TIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEF 1057
+ +++LS T +P + R +++ L + + IK
Sbjct: 292 DLYANTVLSGG-------TTMYP---GIADRMQKEITALAPST------MKIKIIA---- 331
Query: 1058 PAKENYVAWLGGAIFAATESYNKRAIQKDVY 1088
P + Y W+GG+I A+ ++ + I K Y
Sbjct: 332 PPERKYSVWIGGSILASLSTFQQMWISKQEY 362
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 81/400 (20%), Positives = 153/400 (38%), Gaps = 84/400 (21%)
Query: 44 GVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL------RNLYEYKDADDLYGLLI 97
+V+D GS K G G P+ S V P + ++ Y +A G+L
Sbjct: 7 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 66
Query: 98 -------------EFIRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKH 140
+ + KI F+ +P++ +++ E+ L P R + +++F+
Sbjct: 67 LKYPIEXGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 126
Query: 141 YEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVE 200
+ ++ ++SL G TG+V+D G +P+YEG + A L L G+ +
Sbjct: 127 FNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLT 186
Query: 201 AHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT---- 256
++ +K L T + E I+ DIK C+V
Sbjct: 187 DYL-----------------MKILTERGYSFTTTAERE-----IVRDIKEKLCYVALDFE 224
Query: 257 -TMERSAEIAAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETAFEVLFE 303
M +A ++ ++ P G + + N + + P S I ET F + +
Sbjct: 225 QEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMK 284
Query: 304 LDLDMLNIATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLF 363
D+D+ + +++LS T +P + R +++ L + +
Sbjct: 285 CDVDIRK--DLYANTVLSGG-------TTMYP---GIADRMQKEITALAPST------MK 326
Query: 364 IKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVY 403
IK P + Y W+GG+I A+ ++ + I K Y
Sbjct: 327 IKIIA----PPERKYSVWIGGSILASLSTFQQMWISKQEY 362
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 12/121 (9%)
Query: 436 GHIRETAFEVLFE---LDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLK 492
G+ R E LF+ L ++ I +S++K D++K L N +L+GGT M PG+
Sbjct: 251 GNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIA 310
Query: 493 YRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDA 552
R+ +E+ L S + IK P + Y W+GG+I A+ ++ + I K
Sbjct: 311 DRMQKEITALAPS-----TMKIKIIA----PPERKYSVWIGGSILASLSTFQQMWISKQE 361
Query: 553 Y 553
Y
Sbjct: 362 Y 362
>pdb|3BYH|A Chain A, Model Of Actin-Fimbrin Abd2 Complex
pdb|3LUE|A Chain A, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|B Chain B, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|C Chain C, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|D Chain D, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|E Chain E, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|F Chain F, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|G Chain G, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|H Chain H, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|I Chain I, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|J Chain J, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3J0S|A Chain A, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|B Chain B, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|C Chain C, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|D Chain D, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|E Chain E, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|F Chain F, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|G Chain G, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|H Chain H, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|I Chain I, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|J Chain J, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|K Chain K, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|L Chain L, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3UB5|A Chain A, Profilin:actin With A Wide Open Nucleotide Cleft
Length = 374
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 83/391 (21%), Positives = 151/391 (38%), Gaps = 75/391 (19%)
Query: 738 GVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL------RNLYEYKDADDLYGLLI 791
+V+D GS K G G P+ S V P + ++ Y +A G+L
Sbjct: 6 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 65
Query: 792 -------------EFIRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKH 834
+ + KI F+ +P++ +++ E+ L P R + +++F+
Sbjct: 66 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 125
Query: 835 YEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSV 894
+ ++ ++SL G TG+V+D G +P+YEG + A L L G
Sbjct: 126 FNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAG---- 181
Query: 895 ESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT-----TMERSAEI 949
R L +K L T + E I+ DIK C+V M +A
Sbjct: 182 ----RDLTDYLMKILTERGYSFTTTAERE-----IVRDIKEKLCYVALDFEQEMATAASS 232
Query: 950 AAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETAFEVLFELDLDMLNIA 997
++ ++ P G + + N + + P S I ET F + + D+D+
Sbjct: 233 SSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRK-- 290
Query: 998 TIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEF 1057
+ +++LS T +P + R +++ L + + IK
Sbjct: 291 DLYANTVLSGG-------TTMYP---GIADRMQKEITALAPST------MKIKIIA---- 330
Query: 1058 PAKENYVAWLGGAIFAATESYNKRAIQKDVY 1088
P + Y W+GG+I A+ ++ + I K Y
Sbjct: 331 PPERKYSVWIGGSILASLSTFQQMWISKQEY 361
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 85/405 (20%), Positives = 160/405 (39%), Gaps = 72/405 (17%)
Query: 22 GVVLDIGSKYTKYGIFGSFQPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLR 81
+V+D GS K G G P+ V I + G+ K S V D +K R
Sbjct: 6 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK---DSYVGDEAQSK-R 61
Query: 82 NLYEYKDADDLYGLLIEF--IRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAK 135
+ K + +G++ + + KI F+ +P++ +++ E+ L P R + +
Sbjct: 62 GILTLKYPIE-HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 120
Query: 136 VLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLG 195
++F+ + ++ ++SL G TG+V+D G +P+YEG + A L L
Sbjct: 121 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 180
Query: 196 GQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFV 255
G+ + ++ +K L T + E I+ DIK C+V
Sbjct: 181 GRDLTDYL-----------------MKILTERGYSFTTTAERE-----IVRDIKEKLCYV 218
Query: 256 T-----TMERSAEIAAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETAF 298
M +A ++ ++ P G + + N + + P S I ET F
Sbjct: 219 ALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTF 278
Query: 299 EVLFELDLDMLNIATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNIC 358
+ + D+D+ + +++LS T +P + R +++ L +
Sbjct: 279 NSIMKCDVDIRK--DLYANTVLSGG-------TTMYP---GIADRMQKEITALAPST--- 323
Query: 359 CYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVY 403
+ IK P + Y W+GG+I A+ ++ + I K Y
Sbjct: 324 ---MKIKIIA----PPERKYSVWIGGSILASLSTFQQMWISKQEY 361
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 12/121 (9%)
Query: 436 GHIRETAFEVLFE---LDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLK 492
G+ R E LF+ L ++ I +S++K D++K L N +L+GGT M PG+
Sbjct: 250 GNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIA 309
Query: 493 YRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDA 552
R+ +E+ L S + IK P + Y W+GG+I A+ ++ + I K
Sbjct: 310 DRMQKEITALAPS-----TMKIKIIA----PPERKYSVWIGGSILASLSTFQQMWISKQE 360
Query: 553 Y 553
Y
Sbjct: 361 Y 361
>pdb|3QB0|A Chain A, Crystal Structure Of Actin-Related Protein Arp4 From S.
Cerevisiae Complexed With Atp
pdb|3QB0|B Chain B, Crystal Structure Of Actin-Related Protein Arp4 From S.
Cerevisiae Complexed With Atp
pdb|3QB0|C Chain C, Crystal Structure Of Actin-Related Protein Arp4 From S.
Cerevisiae Complexed With Atp
pdb|3QB0|D Chain D, Crystal Structure Of Actin-Related Protein Arp4 From S.
Cerevisiae Complexed With Atp
Length = 498
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 56/102 (54%), Gaps = 7/102 (6%)
Query: 452 DMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLLQELRTLIESPPYKDK 511
+++ +A ++ S++ + D++ LA N++LTGGT+ PGL RL+ EL ++ P K +
Sbjct: 390 ELIGLADLVYSSIMSSDVDLRATLAHNVVLTGGTSSIPGLSDRLMTELNKIL--PSLKFR 447
Query: 512 LFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAY 553
+ + Y +WLGG+I + ++++ + K Y
Sbjct: 448 ILTTGHTI-----ERQYQSWLGGSILTSLGTFHQLWVGKKEY 484
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 82/198 (41%), Gaps = 7/198 (3%)
Query: 10 LPVYEGLLAEKTGVVLDIGSKYTKYGIFGSFQPKGVVLDIGSKYTKYGIFGSFQPKGFIK 69
L VY G E + VV+D GS T G GS P+ ++ + KYT K F +
Sbjct: 15 LQVYGG--DEVSAVVIDPGSYTTNIGYSGSDFPQSILPSVYGKYTA----DEGNKKIFSE 68
Query: 70 SQVKDPHTN-KLRNLYEYKDADDLYGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTV 128
+ P + +L+ + E D ++ + + ++ S ++ E V T
Sbjct: 69 QSIGIPRKDYELKPIIENGLVIDWDTAQEQWQWALQNELYLNSNSGIPALLTEPVWNSTE 128
Query: 129 WRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCA 188
R +VL + + + P+ G LV+DIG+ ++ P+ +G+ + +
Sbjct: 129 NRKKSLEVLLEGMQFEACYLAPTSTCVSFAAGRPNCLVVDIGHDTCSVSPIVDGMTLSKS 188
Query: 189 WKDLSLGGQSVEAHIRRG 206
+ + G+ + I++
Sbjct: 189 TRRNFIAGKFINHLIKKA 206
>pdb|2P9K|B Chain B, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
Length = 394
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 71/139 (51%), Gaps = 6/139 (4%)
Query: 436 GHIRETAFEVLFE---LDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLK 492
G R A E LF+ ++++ + +A ++ +++ D + ++I+L+GG+ M PGL
Sbjct: 255 GGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLP 314
Query: 493 YRLLQELRTL-IESPPYKDKLFIKNFKFH-EFPAKENYVAWLGGAIFA-ATESYNKRAIQ 549
RL +EL+ L +E D + FK E P + ++ +LGGA+ A + + +
Sbjct: 315 SRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWMT 374
Query: 550 KDAYLNNNMTYMEFLGCTM 568
+ Y + +E LG T+
Sbjct: 375 RQEYQEKGVRVLEKLGVTV 393
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 118/279 (42%), Gaps = 37/279 (13%)
Query: 810 RIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEAT 869
+I++ E + PT R + +V+F+ Y+ + +++L G+ TG+V+D G
Sbjct: 106 KILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTH 165
Query: 870 LLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSI 929
+ PVYEG + + L + G I+ LL+ + D V +
Sbjct: 166 ICPVYEGFSLPHLTRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRM---------- 215
Query: 930 IEDIKVCSCFVT-TMERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFE 988
IK C+V +E+ ++A + Y L +G+ I V G R A E LF+
Sbjct: 216 ---IKEKLCYVGYNIEQEQKLALETTVLVES----YTLPDGRIIKVGGE-RFEAPEALFQ 267
Query: 989 ---LDLDMLNIATIILDSLLSVASSDGREE----------TQYFPFRCWVNTRTPEKLCC 1035
++++ + +A ++ ++ + A D R E + +P + +R +L
Sbjct: 268 PHLINVEGVGVAELLFNT-IQAADIDTRSEFYKHIVLSGGSTMYP---GLPSRLERELKQ 323
Query: 1036 LVGWSNICCYKLFIKNFKFH-EFPAKENYVAWLGGAIFA 1073
L + + FK E P + ++ +LGGA+ A
Sbjct: 324 LYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLA 362
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 46/88 (52%)
Query: 116 RIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEAT 175
+I++ E + PT R + +V+F+ Y+ + +++L G+ TG+V+D G
Sbjct: 106 KILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTH 165
Query: 176 LLPVYEGVPVLCAWKDLSLGGQSVEAHI 203
+ PVYEG + + L + G+ + ++
Sbjct: 166 ICPVYEGFSLPHLTRRLDIAGRDITRYL 193
>pdb|1K8K|B Chain B, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|B Chain B, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|B Chain B, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|B Chain B, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9L|B Chain B, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|B Chain B, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|B Chain B, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|B Chain B, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|B Chain B, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
pdb|3DXK|B Chain B, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|B Chain B, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|B Chain B, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|B Chain B, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|B Chain B, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|B Chain B, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 394
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 71/139 (51%), Gaps = 6/139 (4%)
Query: 436 GHIRETAFEVLFE---LDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLK 492
G R A E LF+ ++++ + +A ++ +++ D + ++I+L+GG+ M PGL
Sbjct: 255 GGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLP 314
Query: 493 YRLLQELRTL-IESPPYKDKLFIKNFKFH-EFPAKENYVAWLGGAIFA-ATESYNKRAIQ 549
RL +EL+ L +E D + FK E P + ++ +LGGA+ A + + +
Sbjct: 315 SRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWMT 374
Query: 550 KDAYLNNNMTYMEFLGCTM 568
+ Y + +E LG T+
Sbjct: 375 RQEYQEKGVRVLEKLGVTV 393
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 48/91 (52%)
Query: 113 KDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYS 172
++ +I++ E + PT R + +V+F+ Y+ + +++L G+ TG+V+D G
Sbjct: 103 RNCKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDG 162
Query: 173 EATLLPVYEGVPVLCAWKDLSLGGQSVEAHI 203
+ PVYEG + + L + G+ + ++
Sbjct: 163 VTHICPVYEGFSLPHLTRRLDIAGRDITRYL 193
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/284 (21%), Positives = 124/284 (43%), Gaps = 41/284 (14%)
Query: 807 KDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYS 866
++ +I++ E + PT R + +V+F+ Y+ + +++L G+ TG+V+D G
Sbjct: 103 RNCKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDG 162
Query: 867 EATLLPVYEG--VPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVEN 924
+ PVYEG +P L D++ G+ + ++ LL+ A + +
Sbjct: 163 VTHICPVYEGFSLPHLTRRLDIA---GRDITRYLIKLLLLRGYAFNHSADF--------- 210
Query: 925 LSDSIIEDIKVCSCFVT-TMERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAF 983
+ IK C+V +E+ ++A + Y L +G+ I V G R A
Sbjct: 211 ---ETVRMIKEKLCYVGYNIEQEQKLALETTVLVES----YTLPDGRIIKVGGE-RFEAP 262
Query: 984 EVLFE---LDLDMLNIATIILDSLLSVASSDGREE----------TQYFPFRCWVNTRTP 1030
E LF+ ++++ + +A ++ ++ + A D R E + +P + +R
Sbjct: 263 EALFQPHLINVEGVGVAELLFNT-IQAADIDTRSEFYKHIVLSGGSTMYP---GLPSRLE 318
Query: 1031 EKLCCLVGWSNICCYKLFIKNFKFH-EFPAKENYVAWLGGAIFA 1073
+L L + + FK E P + ++ +LGGA+ A
Sbjct: 319 RELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLA 362
>pdb|1K8K|A Chain A, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|A Chain A, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|A Chain A, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|A Chain A, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|A Chain A, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|A Chain A, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|A Chain A, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|A Chain A, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|A Chain A, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|A Chain A, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
pdb|3DXK|A Chain A, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|A Chain A, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|A Chain A, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|A Chain A, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|A Chain A, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|A Chain A, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 418
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 84/202 (41%), Gaps = 24/202 (11%)
Query: 24 VLDIGSKYTKYGIFGSFQPKGVV---------LDIGSKYTKYGIFGSFQPKGFIKSQVKD 74
V+D G+ YTK G G+ +P+ ++ +G + + + G FI + +
Sbjct: 9 VVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIE 68
Query: 75 PHTNKLRNLYEYKDADDLYGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLA 134
T + + +D + L+ F+ ++ FKY P+D ++ E L R A
Sbjct: 69 KPTYATKWPIRHGIVED-WDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTA 127
Query: 135 KVLFKHYEVLSLLYV-----------PSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGV 183
+++F+ + V L S V TL TG V+D G ++PV EG
Sbjct: 128 EIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTL---TGTVIDSGDGVTHVIPVAEGY 184
Query: 184 PVLCAWKDLSLGGQSVEAHIRR 205
+ K + + G+ + I++
Sbjct: 185 VIGSCIKHIPIAGRDITYFIQQ 206
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 81/206 (39%), Gaps = 45/206 (21%)
Query: 740 VLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYE---YKDADDL---------- 786
V+D G+ YTK G G+ +P+ I S + + K+ + + K DDL
Sbjct: 9 VVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIE 68
Query: 787 -----------------YGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAK 829
+ L+ F+ ++ FKY P+D ++ E L R A+
Sbjct: 69 KPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 128
Query: 830 VLFKHYEVLSLLYV-----------PSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVP 878
++F+ + V L S V TL TG V+D G ++PV EG
Sbjct: 129 IMFESFNVPGLYIAVQAVLALAASWTSRQVGERTL---TGTVIDSGDGVTHVIPVAEGYV 185
Query: 879 VLCAWKDLSLGGGQSVESHIRSLLID 904
+ K + + G+ + I+ LL D
Sbjct: 186 IGSCIKHIPI-AGRDITYFIQQLLRD 210
Score = 37.0 bits (84), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 27/130 (20%), Positives = 58/130 (44%), Gaps = 15/130 (11%)
Query: 456 IATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLLQELRTLIESP-PYKDKLFI 514
I+ ++ + + D+++PL +NI+L+GG+ M RL ++L+ +++ ++L
Sbjct: 296 ISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSG 355
Query: 515 KNFKFHEFPAK------ENYVAWLGGAIFAATESYNKRAIQKDAYLNNNMTYMEFLGCTM 568
K + + Y W GG++ A+T + + K Y E +G ++
Sbjct: 356 GRLKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDY--------EEIGPSI 407
Query: 569 TAFGPVIAMF 578
PV +
Sbjct: 408 CRHNPVFGVM 417
>pdb|3DWL|A Chain A, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|B Chain B, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 427
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 13/140 (9%)
Query: 792 EFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSL--------LYV 843
F ++ FKY P+D ++ E L P R A+++F+ + L
Sbjct: 107 RFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALA 166
Query: 844 PSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLI 903
S S T TG V+D G ++PV EG + + K + L G+ V ++SLL
Sbjct: 167 ASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPL-AGRDVTYFVQSLLR 225
Query: 904 DEIKALENPDPYIVTVEDVE 923
D PD + T E ++
Sbjct: 226 DR----NEPDSSLKTAERIK 241
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 59/149 (39%), Gaps = 22/149 (14%)
Query: 98 EFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSL--------LYV 149
F ++ FKY P+D ++ E L P R A+++F+ + L
Sbjct: 107 RFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALA 166
Query: 150 PSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSV 209
S S T TG V+D G ++PV EG + + K + L G+ V
Sbjct: 167 ASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTY-------- 218
Query: 210 ESHIRSLLIDEIKALENPDPYIVTVEDVE 238
++SLL D PD + T E ++
Sbjct: 219 --FVQSLLRDR----NEPDSSLKTAERIK 241
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 61/130 (46%), Gaps = 15/130 (11%)
Query: 436 GHIRETAFEVLFELDL---DMLNIATIILDSLLKTGR-DMKKPLAENILLTGGTAMTPGL 491
G R A E+ F ++ D L ++D+++++ D++K L +NI+L+GG+ +
Sbjct: 283 GFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNF 342
Query: 492 KYRLLQELRTLIESPPYKDKLFIK--------NFKFHEFPAKENYVAWLGGAIFAATESY 543
RL ++L+ +++ ++ ++ N H+ ++ W GG++ A T +
Sbjct: 343 GNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHK---RQRNAVWFGGSLLAQTPEF 399
Query: 544 NKRAIQKDAY 553
K Y
Sbjct: 400 GSYCHTKADY 409
>pdb|1TA9|A Chain A, Crystal Structure Of Glycerol Dehydrogenase From
Schizosaccharomyces Pombe
pdb|1TA9|B Chain B, Crystal Structure Of Glycerol Dehydrogenase From
Schizosaccharomyces Pombe
Length = 450
Score = 33.9 bits (76), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 15/91 (16%)
Query: 620 IFGVVISVLCQEAF-RYILYLILQKSRG----GLQYVSDRNTMDNTYAMAYVSGLGY--G 672
I G I+ C++ +Y L IL +RG + V + NT+ +SGLG+ G
Sbjct: 258 IAGRYIARACKDTLEKYALSAILSNTRGVCTEAFENVVEANTL--------MSGLGFENG 309
Query: 673 TISAAFSLLNVLDQVSGPGTMGLKGESQYFG 703
++AA ++ N + + GP + GE +G
Sbjct: 310 GLAAAHAIHNGMTAIHGPVHRLMHGEKVAYG 340
>pdb|2DYJ|A Chain A, Crystal Structure Of Ribosome-Binding Factor A From
Thermus Thermophilus Hb8
pdb|2DYJ|B Chain B, Crystal Structure Of Ribosome-Binding Factor A From
Thermus Thermophilus Hb8
pdb|2R1C|A Chain A, Coordinates Of The Thermus Thermophilus Ribosome Binding
Factor A (rbfa) Homology Model As Fitted Into The
Cryo-em Map Of A 30s-rbfa Complex
Length = 95
Score = 31.2 bits (69), Expect = 3.0, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 890 GGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKV 935
G +E+ ++ L +EI+ALE+P +++TVE V D + + V
Sbjct: 4 GKAHLEAQLKRALAEEIQALEDPRLFLLTVEAVRLSKDGSVLSVYV 49
Score = 30.4 bits (67), Expect = 6.0, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 209 VESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKV 250
+E+ ++ L +EI+ALE+P +++TVE V D + + V
Sbjct: 8 LEAQLKRALAEEIQALEDPRLFLLTVEAVRLSKDGSVLSVYV 49
>pdb|2Z1K|A Chain A, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|B Chain B, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|C Chain C, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|D Chain D, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
Length = 475
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 19/44 (43%)
Query: 490 GLKYRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLG 533
G + Q L E PY+D +K F + A NY AW G
Sbjct: 123 GRGFFAFQHLXENGEQSPYRDWYHVKGFPLKAYTAHPNYEAWWG 166
>pdb|3CTY|A Chain A, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
pdb|3CTY|B Chain B, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
Length = 319
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 20/87 (22%)
Query: 641 LQKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 700
++K++GG D T D+TY YV ++ + +G+KGES+
Sbjct: 97 IKKTQGGF----DIETNDDTYHAKYV----------------IITTGTTHKHLGVKGESE 136
Query: 701 YFGFTTSIFTCCFSLLHVFWSIVFFRG 727
YFG TS + C L +V G
Sbjct: 137 YFGKGTSYCSTCDGYLFKGKRVVTIGG 163
>pdb|2IFY|A Chain A, Structure Of Bacillus Anthracis Cofactor-Independent
Phosphoglucerate Mutase
Length = 508
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 226 NPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIAAK 267
NP P+IVT DVE D I+ DI + +E+ E+ K
Sbjct: 463 NPVPFIVTKNDVELREDGILGDIAPTMLTLLGVEQPKEMTGK 504
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 911 NPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIAAK 952
NP P+IVT DVE D I+ DI + +E+ E+ K
Sbjct: 463 NPVPFIVTKNDVELREDGILGDIAPTMLTLLGVEQPKEMTGK 504
>pdb|2YPD|A Chain A, Crystal Structure Of The Jumonji Domain Of Human Jumonji
Domain Containing 1c Protein
pdb|2YPD|B Chain B, Crystal Structure Of The Jumonji Domain Of Human Jumonji
Domain Containing 1c Protein
Length = 392
Score = 29.6 bits (65), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 493 YRLLQELRTLIESPPYKDKLFIKNFKFH 520
+ L QELR L E Y DKL +KN +H
Sbjct: 336 FHLTQELRLLKEEINYDDKLQVKNILYH 363
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,819,992
Number of Sequences: 62578
Number of extensions: 1406569
Number of successful extensions: 3394
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 3100
Number of HSP's gapped (non-prelim): 255
length of query: 1107
length of database: 14,973,337
effective HSP length: 109
effective length of query: 998
effective length of database: 8,152,335
effective search space: 8136030330
effective search space used: 8136030330
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)