Query psy9135
Match_columns 1107
No_of_seqs 405 out of 2709
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 19:49:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9135.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9135hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00452 actin; Provisional 100.0 8.5E-68 1.8E-72 612.7 29.4 336 42-558 5-367 (375)
2 KOG0676|consensus 100.0 1.9E-68 4.1E-73 595.8 22.9 340 40-562 5-368 (372)
3 PTZ00466 actin-like protein; P 100.0 1E-66 2.2E-71 604.1 31.6 337 40-558 10-372 (380)
4 PTZ00281 actin; Provisional 100.0 8.2E-66 1.8E-70 598.0 29.8 338 40-558 4-368 (376)
5 KOG0679|consensus 100.0 5.3E-66 1.1E-70 555.6 25.9 375 37-558 6-417 (426)
6 PTZ00452 actin; Provisional 100.0 2.8E-64 6E-69 583.4 27.8 332 735-1100 4-375 (375)
7 KOG0676|consensus 100.0 3.8E-65 8.3E-70 569.2 19.1 331 734-1100 5-372 (372)
8 PTZ00004 actin-2; Provisional 100.0 1.5E-63 3.3E-68 579.8 30.3 339 41-558 5-370 (378)
9 PTZ00466 actin-like protein; P 100.0 8.1E-63 1.8E-67 571.6 28.7 329 736-1100 12-380 (380)
10 KOG0677|consensus 100.0 3.5E-63 7.5E-68 505.4 21.9 345 42-559 4-381 (389)
11 PTZ00281 actin; Provisional 100.0 4.2E-62 9.1E-67 566.9 27.2 333 734-1100 4-376 (376)
12 PTZ00280 Actin-related protein 100.0 4.6E-61 9.9E-66 566.1 31.4 351 42-558 4-402 (414)
13 KOG0677|consensus 100.0 2.9E-61 6.2E-66 491.3 20.2 332 736-1093 4-380 (389)
14 KOG0679|consensus 100.0 2.4E-61 5.1E-66 519.7 20.1 334 733-1093 8-417 (426)
15 PF00022 Actin: Actin; InterP 100.0 3.5E-60 7.6E-65 557.6 30.5 350 40-558 2-385 (393)
16 PTZ00004 actin-2; Provisional 100.0 3.6E-60 7.7E-65 551.6 27.6 334 734-1100 4-378 (378)
17 KOG0680|consensus 100.0 2.9E-58 6.2E-63 483.6 24.6 359 40-563 1-394 (400)
18 smart00268 ACTIN Actin. ACTIN 100.0 8.7E-58 1.9E-62 533.2 29.7 338 43-558 2-365 (373)
19 PTZ00280 Actin-related protein 100.0 9.6E-57 2.1E-61 529.4 28.2 338 736-1098 4-408 (414)
20 PF00022 Actin: Actin; InterP 100.0 3.3E-56 7.3E-61 523.9 25.4 343 734-1100 2-393 (393)
21 cd00012 ACTIN Actin; An ubiqui 100.0 2.4E-55 5.1E-60 512.2 30.7 338 44-558 1-365 (371)
22 COG5277 Actin and related prot 100.0 2.3E-55 5.1E-60 509.6 27.6 379 42-562 6-440 (444)
23 smart00268 ACTIN Actin. ACTIN 100.0 1.3E-53 2.8E-58 498.1 26.6 333 737-1100 2-373 (373)
24 KOG0681|consensus 100.0 4.2E-53 9.1E-58 470.7 23.7 480 42-558 23-632 (645)
25 cd00012 ACTIN Actin; An ubiqui 100.0 3.1E-51 6.7E-56 477.6 27.5 336 738-1098 1-371 (371)
26 COG5277 Actin and related prot 100.0 5E-50 1.1E-54 465.1 22.9 334 737-1093 7-436 (444)
27 PF06105 Aph-1: Aph-1 protein; 100.0 3.2E-50 6.9E-55 423.6 6.4 190 560-752 2-194 (238)
28 KOG0680|consensus 100.0 4.1E-48 8.8E-53 407.1 19.4 326 736-1098 3-394 (400)
29 KOG3972|consensus 100.0 6.9E-46 1.5E-50 364.5 11.9 172 560-731 3-177 (252)
30 KOG0678|consensus 100.0 5.6E-43 1.2E-47 368.7 10.9 349 44-558 6-402 (415)
31 KOG0678|consensus 100.0 1E-42 2.2E-47 366.7 10.0 336 737-1096 5-406 (415)
32 KOG0681|consensus 100.0 1.1E-38 2.4E-43 355.7 19.4 167 736-905 23-216 (645)
33 KOG0797|consensus 100.0 4.8E-37 1E-41 340.3 24.8 396 90-558 200-607 (618)
34 KOG0797|consensus 100.0 2.1E-28 4.5E-33 271.9 18.0 285 786-1100 202-615 (618)
35 PRK13930 rod shape-determining 99.9 9E-26 2E-30 259.9 21.3 183 45-257 11-220 (335)
36 PRK13927 rod shape-determining 99.9 6E-25 1.3E-29 252.9 20.9 182 44-257 7-216 (334)
37 TIGR00904 mreB cell shape dete 99.9 4.3E-23 9.4E-28 237.1 22.4 142 87-257 70-218 (333)
38 PRK13929 rod-share determining 99.9 2.6E-22 5.6E-27 230.4 20.4 142 87-257 68-218 (335)
39 PRK13930 rod shape-determining 99.9 3.9E-22 8.5E-27 229.7 14.9 284 738-1074 10-327 (335)
40 PRK13927 rod shape-determining 99.9 1.4E-21 3.1E-26 224.8 14.3 276 738-1074 7-323 (334)
41 PRK13928 rod shape-determining 99.8 4.3E-19 9.3E-24 204.2 19.2 142 87-257 67-215 (336)
42 PF06723 MreB_Mbl: MreB/Mbl pr 99.8 2.9E-19 6.3E-24 200.8 17.1 144 88-259 66-215 (326)
43 TIGR00904 mreB cell shape dete 99.8 2E-18 4.4E-23 198.5 15.0 276 739-1074 5-326 (333)
44 PRK13929 rod-share determining 99.8 6.8E-18 1.5E-22 193.9 16.3 272 738-1073 6-324 (335)
45 PRK13928 rod shape-determining 99.6 5.4E-15 1.2E-19 170.3 13.1 283 739-1074 6-322 (336)
46 COG1077 MreB Actin-like ATPase 99.5 7.1E-13 1.5E-17 143.7 18.2 205 20-257 6-221 (342)
47 PF06723 MreB_Mbl: MreB/Mbl pr 99.5 6.1E-13 1.3E-17 150.0 16.2 283 737-1074 2-320 (326)
48 TIGR02529 EutJ ethanolamine ut 99.3 9.7E-11 2.1E-15 128.0 18.4 114 88-206 34-150 (239)
49 PRK15080 ethanolamine utilizat 99.2 1.3E-09 2.9E-14 121.1 20.6 109 93-206 66-177 (267)
50 PTZ00400 DnaK-type molecular c 98.7 1.9E-06 4.2E-11 107.7 24.1 92 114-206 174-273 (663)
51 CHL00094 dnaK heat shock prote 98.7 2.5E-06 5.5E-11 106.3 24.8 91 115-206 136-234 (621)
52 PRK00290 dnaK molecular chaper 98.6 2.3E-06 5E-11 106.9 23.8 92 114-206 133-232 (627)
53 TIGR02350 prok_dnaK chaperone 98.6 2.5E-06 5.4E-11 106.1 23.5 91 115-206 131-230 (595)
54 TIGR01991 HscA Fe-S protein as 98.6 3.2E-06 6.9E-11 104.8 23.8 92 114-206 129-228 (599)
55 PRK01433 hscA chaperone protei 98.6 1.6E-06 3.5E-11 106.8 20.3 92 114-206 141-240 (595)
56 PLN03184 chloroplast Hsp70; Pr 98.6 5.5E-06 1.2E-10 103.8 24.9 110 94-206 151-271 (673)
57 PRK05183 hscA chaperone protei 98.6 4.2E-06 9.1E-11 104.0 22.1 92 114-206 149-248 (616)
58 PRK13411 molecular chaperone D 98.5 8.9E-06 1.9E-10 101.8 23.8 92 114-206 133-233 (653)
59 TIGR01174 ftsA cell division p 98.5 2.5E-06 5.4E-11 100.0 17.6 97 126-256 156-257 (371)
60 PRK09472 ftsA cell division pr 98.5 2.2E-06 4.8E-11 101.8 16.9 77 127-206 165-246 (420)
61 PRK13410 molecular chaperone D 98.5 1.3E-05 2.7E-10 100.3 24.1 91 115-206 136-234 (668)
62 PTZ00009 heat shock 70 kDa pro 98.5 1.8E-05 3.9E-10 99.2 25.1 92 114-206 140-241 (653)
63 PTZ00186 heat shock 70 kDa pre 98.5 9.9E-06 2.2E-10 100.8 22.5 92 114-206 160-259 (657)
64 COG1077 MreB Actin-like ATPase 98.4 5E-06 1.1E-10 91.1 16.2 246 737-1016 7-282 (342)
65 TIGR02529 EutJ ethanolamine ut 98.4 6.2E-06 1.3E-10 90.3 14.8 148 741-902 2-151 (239)
66 PF00012 HSP70: Hsp70 protein; 98.3 1.5E-05 3.3E-10 99.6 19.8 91 115-206 136-235 (602)
67 PRK11678 putative chaperone; P 98.3 4.8E-05 1E-09 90.7 22.8 90 114-205 149-261 (450)
68 COG0443 DnaK Molecular chapero 98.1 0.00029 6.3E-09 86.7 23.2 93 113-206 119-219 (579)
69 PRK15080 ethanolamine utilizat 98.1 7.5E-05 1.6E-09 83.3 16.6 153 735-902 23-178 (267)
70 PRK00290 dnaK molecular chaper 97.8 0.00044 9.5E-09 86.7 18.0 95 809-905 134-236 (627)
71 COG0849 ftsA Cell division ATP 97.8 0.00055 1.2E-08 80.0 16.2 87 136-255 172-263 (418)
72 TIGR02350 prok_dnaK chaperone 97.7 0.00053 1.2E-08 85.5 16.8 95 809-905 131-234 (595)
73 TIGR01991 HscA Fe-S protein as 97.7 0.00065 1.4E-08 84.5 17.2 96 808-905 129-232 (599)
74 TIGR01175 pilM type IV pilus a 97.7 0.0005 1.1E-08 79.9 14.5 78 126-206 141-230 (348)
75 PRK13411 molecular chaperone D 97.6 0.0011 2.3E-08 83.3 17.7 96 808-905 133-237 (653)
76 PTZ00186 heat shock 70 kDa pre 97.6 0.0014 3.1E-08 81.9 17.4 95 809-905 161-263 (657)
77 PRK13917 plasmid segregation p 97.6 0.0014 2.9E-08 76.0 15.7 66 141-206 151-229 (344)
78 PRK01433 hscA chaperone protei 97.6 0.0022 4.7E-08 79.5 18.3 96 808-905 141-244 (595)
79 PRK05183 hscA chaperone protei 97.5 0.0024 5.3E-08 79.6 18.0 96 808-905 149-252 (616)
80 PTZ00009 heat shock 70 kDa pro 97.5 0.0027 5.9E-08 79.8 18.1 96 808-905 140-245 (653)
81 TIGR01174 ftsA cell division p 97.3 0.0084 1.8E-07 70.4 18.4 98 820-942 156-258 (371)
82 CHL00094 dnaK heat shock prote 97.3 0.0026 5.7E-08 79.6 14.1 95 809-905 136-238 (621)
83 COG4972 PilM Tfp pilus assembl 97.2 0.015 3.3E-07 64.5 18.0 71 134-206 154-235 (354)
84 PF11104 PilM_2: Type IV pilus 97.2 0.0018 3.9E-08 75.1 11.7 108 93-206 87-222 (340)
85 PTZ00400 DnaK-type molecular c 97.2 0.006 1.3E-07 76.8 16.3 96 808-905 174-277 (663)
86 PRK13410 molecular chaperone D 97.1 0.0069 1.5E-07 76.1 15.5 95 809-905 136-238 (668)
87 PLN03184 chloroplast Hsp70; Pr 97.0 0.005 1.1E-07 77.5 13.7 96 808-905 172-275 (673)
88 TIGR03739 PRTRC_D PRTRC system 96.9 0.0048 1E-07 70.9 11.3 162 741-905 2-215 (320)
89 TIGR03286 methan_mark_15 putat 96.8 0.077 1.7E-06 61.5 19.0 67 455-539 336-402 (404)
90 PF00012 HSP70: Hsp70 protein; 96.7 0.014 3.1E-07 73.1 13.4 95 809-905 136-239 (602)
91 TIGR00241 CoA_E_activ CoA-subs 96.6 0.084 1.8E-06 58.3 17.5 43 164-206 93-136 (248)
92 TIGR03739 PRTRC_D PRTRC system 96.5 0.011 2.5E-07 67.8 10.5 109 96-206 86-211 (320)
93 PRK11678 putative chaperone; P 96.4 0.046 1E-06 65.5 14.9 88 809-899 150-260 (450)
94 COG0443 DnaK Molecular chapero 96.1 0.1 2.2E-06 64.6 15.6 97 807-905 119-223 (579)
95 TIGR03192 benz_CoA_bzdQ benzoy 96.0 0.52 1.1E-05 52.8 19.1 67 455-539 221-287 (293)
96 TIGR02261 benz_CoA_red_D benzo 95.9 0.39 8.4E-06 53.0 17.8 50 477-538 213-262 (262)
97 PRK13917 plasmid segregation p 95.8 0.097 2.1E-06 60.7 13.4 70 835-905 151-233 (344)
98 KOG0104|consensus 95.7 0.28 6E-06 59.8 16.6 91 115-206 159-272 (902)
99 COG4820 EutJ Ethanolamine util 95.5 0.015 3.1E-07 59.8 4.3 65 137-203 115-179 (277)
100 KOG0100|consensus 95.4 0.9 2E-05 51.6 18.0 92 114-206 172-272 (663)
101 PF06406 StbA: StbA protein; 95.3 0.11 2.4E-06 59.5 11.2 106 100-206 82-209 (318)
102 PRK09472 ftsA cell division pr 94.9 0.12 2.5E-06 61.8 10.3 96 821-941 165-265 (420)
103 PF06406 StbA: StbA protein; 94.9 0.14 3.1E-06 58.7 10.5 165 739-905 3-213 (318)
104 PRK10719 eutA reactivating fac 94.3 0.089 1.9E-06 61.9 7.1 107 93-202 65-184 (475)
105 TIGR01175 pilM type IV pilus a 94.3 1.6 3.4E-05 50.8 17.4 79 820-902 141-231 (348)
106 COG1924 Activator of 2-hydroxy 93.3 7.5 0.00016 44.7 19.6 45 479-540 346-390 (396)
107 COG0849 ftsA Cell division ATP 93.2 0.32 6.9E-06 57.3 9.0 86 832-941 174-264 (418)
108 PF10086 DUF2324: Putative mem 91.6 0.14 3E-06 55.4 3.2 137 583-731 15-186 (223)
109 PF11104 PilM_2: Type IV pilus 91.5 3.2 7E-05 48.1 14.7 109 787-902 87-223 (340)
110 TIGR03706 exo_poly_only exopol 91.4 1.4 3E-05 50.2 11.2 90 114-206 72-167 (300)
111 KOG0101|consensus 91.1 4 8.8E-05 50.1 15.0 91 115-206 144-244 (620)
112 PF01869 BcrAD_BadFG: BadF/Bad 90.7 7.3 0.00016 43.5 16.2 66 456-538 206-271 (271)
113 PRK11031 guanosine pentaphosph 90.5 1.4 3E-05 53.8 10.7 86 117-204 80-172 (496)
114 PRK10719 eutA reactivating fac 90.3 0.81 1.8E-05 54.1 8.1 153 737-896 7-183 (475)
115 KOG0103|consensus 90.3 16 0.00035 45.0 18.9 93 113-206 136-243 (727)
116 KOG0104|consensus 89.8 3.7 7.9E-05 50.6 13.0 95 809-905 159-276 (902)
117 PRK10854 exopolyphosphatase; P 87.6 2.4 5.1E-05 52.1 9.9 85 117-203 85-176 (513)
118 COG4972 PilM Tfp pilus assembl 87.5 15 0.00032 41.6 14.8 42 858-902 195-236 (354)
119 PRK11031 guanosine pentaphosph 85.3 4 8.6E-05 49.9 10.1 80 812-895 81-168 (496)
120 TIGR03123 one_C_unchar_1 proba 85.0 5.9 0.00013 45.2 10.6 29 159-187 125-153 (318)
121 COG0248 GppA Exopolyphosphatas 84.4 3.4 7.4E-05 50.0 8.9 82 122-205 82-170 (492)
122 TIGR03706 exo_poly_only exopol 83.7 5.7 0.00012 45.2 9.9 85 807-896 71-162 (300)
123 PRK10854 exopolyphosphatase; P 81.4 5 0.00011 49.3 8.9 81 812-896 86-174 (513)
124 COG1548 Predicted transcriptio 79.5 8.4 0.00018 41.8 8.5 23 855-877 129-151 (330)
125 PF06277 EutA: Ethanolamine ut 78.6 12 0.00026 44.6 10.3 103 93-199 62-178 (473)
126 KOG0100|consensus 76.5 20 0.00043 41.2 10.7 93 809-904 173-275 (663)
127 PF06277 EutA: Ethanolamine ut 74.6 26 0.00056 41.9 11.5 162 737-906 4-201 (473)
128 TIGR03123 one_C_unchar_1 proba 74.2 20 0.00042 41.1 10.2 29 853-881 125-153 (318)
129 TIGR00241 CoA_E_activ CoA-subs 73.7 25 0.00055 38.7 10.9 134 739-902 3-137 (248)
130 COG4820 EutJ Ethanolamine util 73.7 3.2 6.9E-05 43.2 3.4 62 831-895 115-176 (277)
131 PF02541 Ppx-GppA: Ppx/GppA ph 71.3 16 0.00035 41.1 8.9 89 116-206 59-154 (285)
132 PF01968 Hydantoinase_A: Hydan 68.7 4.5 9.8E-05 45.8 3.6 33 155-187 69-102 (290)
133 PRK13324 pantothenate kinase; 64.5 46 0.001 37.0 10.4 18 738-755 2-19 (258)
134 PRK13321 pantothenate kinase; 63.8 37 0.0008 37.6 9.6 18 739-756 3-20 (256)
135 PF14450 FtsA: Cell division p 63.5 29 0.00062 33.7 7.6 40 165-206 2-51 (120)
136 KOG0103|consensus 62.9 95 0.0021 38.7 13.1 98 807-906 136-248 (727)
137 TIGR02259 benz_CoA_red_A benzo 62.5 7 0.00015 45.5 3.5 53 474-538 380-432 (432)
138 TIGR00671 baf pantothenate kin 61.7 40 0.00087 37.1 9.2 18 739-756 2-19 (243)
139 COG0248 GppA Exopolyphosphatas 59.4 16 0.00036 44.3 6.1 66 821-889 87-160 (492)
140 PF01968 Hydantoinase_A: Hydan 59.1 8 0.00017 43.8 3.3 31 849-879 69-100 (290)
141 COG1521 Pantothenate kinase ty 58.6 67 0.0015 35.5 10.1 119 738-877 2-142 (251)
142 TIGR03286 methan_mark_15 putat 53.2 89 0.0019 36.9 10.5 141 737-901 145-287 (404)
143 PRK13324 pantothenate kinase; 52.6 1.3E+02 0.0027 33.6 11.2 15 161-175 123-137 (258)
144 PRK13317 pantothenate kinase; 50.7 17 0.00036 40.9 4.1 72 454-539 200-273 (277)
145 PF03309 Pan_kinase: Type III 50.1 29 0.00063 37.1 5.7 19 739-757 2-20 (206)
146 PRK13321 pantothenate kinase; 49.6 1.3E+02 0.0027 33.4 10.8 18 45-62 3-20 (256)
147 KOG0101|consensus 49.0 51 0.0011 40.8 8.0 95 809-905 144-248 (620)
148 PRK13318 pantothenate kinase; 48.5 98 0.0021 34.3 9.7 18 738-755 2-19 (258)
149 COG1521 Pantothenate kinase ty 48.5 1.2E+02 0.0027 33.5 10.1 118 45-183 3-142 (251)
150 COG1548 Predicted transcriptio 48.3 12 0.00027 40.6 2.4 24 161-184 129-152 (330)
151 PRK13326 pantothenate kinase; 45.3 1.2E+02 0.0026 33.9 9.6 21 736-756 6-26 (262)
152 PF02541 Ppx-GppA: Ppx/GppA ph 44.6 36 0.00077 38.3 5.6 81 812-896 61-149 (285)
153 TIGR00671 baf pantothenate kin 44.1 1.4E+02 0.0029 33.0 9.8 18 45-62 2-19 (243)
154 COG4377 Predicted membrane pro 43.2 41 0.0009 35.2 5.1 51 618-681 79-129 (258)
155 PF08841 DDR: Diol dehydratase 38.9 94 0.002 34.6 7.2 78 127-206 94-176 (332)
156 PF03309 Pan_kinase: Type III 36.3 2.7E+02 0.0057 29.7 10.4 19 45-63 2-20 (206)
157 PRK03011 butyrate kinase; Prov 35.5 4.6E+02 0.0099 30.7 12.8 25 162-187 176-200 (358)
158 KOG1386|consensus 35.4 3E+02 0.0064 33.3 11.0 88 94-181 65-181 (501)
159 PF13367 PrsW-protease: Protea 34.6 51 0.0011 34.6 4.5 66 618-689 42-108 (191)
160 PF08735 DUF1786: Putative pyr 34.4 1.3E+02 0.0029 33.1 7.6 57 128-185 127-190 (254)
161 COG1924 Activator of 2-hydroxy 33.2 3.2E+02 0.0069 31.9 10.6 136 737-899 136-273 (396)
162 PRK13318 pantothenate kinase; 32.7 2.5E+02 0.0055 31.0 9.9 15 162-176 124-138 (258)
163 TIGR03192 benz_CoA_bzdQ benzoy 32.4 4.3E+02 0.0092 30.0 11.4 127 738-896 34-167 (293)
164 PRK13326 pantothenate kinase; 31.3 3E+02 0.0066 30.7 10.0 16 160-175 124-139 (262)
165 TIGR02261 benz_CoA_red_D benzo 30.6 2.2E+02 0.0048 31.7 8.7 45 855-899 96-142 (262)
166 PRK13320 pantothenate kinase; 26.9 3.9E+02 0.0084 29.4 9.9 19 738-756 4-22 (244)
167 COG4819 EutA Ethanolamine util 26.5 4.5E+02 0.0097 30.1 9.9 151 737-894 6-180 (473)
168 PRK13329 pantothenate kinase; 25.4 5E+02 0.011 28.7 10.4 15 161-175 118-132 (249)
169 PF08841 DDR: Diol dehydratase 25.1 1.5E+02 0.0032 33.2 5.9 97 821-941 94-197 (332)
170 cd08627 PI-PLCc_gamma1 Catalyt 25.0 1.2E+02 0.0026 32.9 5.2 45 93-143 73-117 (229)
171 PF03702 UPF0075: Uncharacteri 24.6 54 0.0012 38.3 2.8 40 457-501 271-310 (364)
172 cd08630 PI-PLCc_delta3 Catalyt 24.0 1.3E+02 0.0027 33.5 5.3 46 92-143 72-117 (258)
173 COG4035 Predicted membrane pro 23.5 32 0.0007 31.2 0.5 43 553-602 60-105 (108)
174 PF08735 DUF1786: Putative pyr 23.5 4.8E+02 0.011 28.9 9.5 46 833-879 138-190 (254)
175 PF01869 BcrAD_BadFG: BadF/Bad 23.5 5.4E+02 0.012 28.4 10.5 125 740-879 2-129 (271)
176 cd08626 PI-PLCc_beta4 Catalyti 23.4 1.3E+02 0.0028 33.3 5.2 47 91-143 73-119 (257)
177 cd08596 PI-PLCc_epsilon Cataly 23.2 1.3E+02 0.0029 33.2 5.2 46 92-143 72-117 (254)
178 cd08629 PI-PLCc_delta1 Catalyt 23.1 1.3E+02 0.0029 33.3 5.2 47 91-143 71-117 (258)
179 cd08595 PI-PLCc_zeta Catalytic 22.8 1.3E+02 0.0029 33.2 5.2 47 91-143 71-117 (257)
180 cd08632 PI-PLCc_eta1 Catalytic 22.7 1.4E+02 0.003 32.9 5.2 47 91-143 71-117 (253)
181 COG4012 Uncharacterized protei 22.7 3.7E+02 0.0079 29.8 8.1 40 146-185 207-250 (342)
182 TIGR00744 ROK_glcA_fam ROK fam 22.3 7.2E+02 0.016 28.0 11.5 54 826-881 88-148 (318)
183 cd08631 PI-PLCc_delta4 Catalyt 22.2 1.4E+02 0.003 33.1 5.1 46 92-143 72-117 (258)
184 cd08593 PI-PLCc_delta Catalyti 22.0 1.4E+02 0.003 33.1 5.1 47 91-143 71-117 (257)
185 cd08594 PI-PLCc_eta Catalytic 21.9 1.5E+02 0.0032 32.3 5.1 47 91-143 71-117 (227)
186 PRK13329 pantothenate kinase; 21.9 4.8E+02 0.01 28.8 9.4 17 738-754 3-19 (249)
187 cd08591 PI-PLCc_beta Catalytic 21.8 1.4E+02 0.0031 33.0 5.2 45 93-143 75-119 (257)
188 cd08598 PI-PLC1c_yeast Catalyt 21.4 1.5E+02 0.0033 32.3 5.2 46 92-143 72-117 (231)
189 cd08592 PI-PLCc_gamma Catalyti 21.0 1.6E+02 0.0034 32.1 5.2 46 92-143 72-117 (229)
190 cd08627 PI-PLCc_gamma1 Catalyt 21.0 1.2E+02 0.0027 32.8 4.4 45 787-837 73-117 (229)
191 cd08633 PI-PLCc_eta2 Catalytic 20.9 1.6E+02 0.0034 32.6 5.2 47 91-143 71-117 (254)
192 KOG1385|consensus 20.5 4.5E+02 0.0098 31.1 8.9 134 737-871 68-228 (453)
193 cd08626 PI-PLCc_beta4 Catalyti 20.1 1.3E+02 0.0029 33.3 4.4 45 787-837 75-119 (257)
No 1
>PTZ00452 actin; Provisional
Probab=100.00 E-value=8.5e-68 Score=612.74 Aligned_cols=336 Identities=24% Similarity=0.399 Sum_probs=295.0
Q ss_pred CCeEEEecCCceeEEeeecCcccccccccceeccCCcc------ccceeccC-----------------chhhHHHHHHH
Q psy9135 42 PKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNK------LRNLYEYK-----------------DADDLYGLLIE 98 (1107)
Q Consensus 42 ~~~iViD~GS~~~K~G~age~~P~~i~ps~v~~~~~~~------~~~~~~~~-----------------~~~~~~~~le~ 98 (1107)
.++||||+||+++|+|||||+.|+.++||+||+++... .++.+.|+ +.+.+||.||.
T Consensus 5 ~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~l~~Pi~~G~I~dwd~~e~ 84 (375)
T PTZ00452 5 YPAVVIDNGSGYCKIGIAGDDAPTSCFPAIVGRSKQNDGIFSTFNKEYYVGEEAQAKRGVLAIKEPIQNGIINSWDDIEI 84 (375)
T ss_pred CCEEEEECCCCeEEEeeCCCCCcCEEecceeEEECCccccccccccceEEChhhhccccCcEEcccCcCCEEcCHHHHHH
Confidence 56899999999999999999999999999999986542 12333333 44567999999
Q ss_pred HHHHHHhhccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCCceEEEEEeCCCceEEEE
Q psy9135 99 FIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLP 178 (1107)
Q Consensus 99 i~~~~~~~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~~tglVVDiG~~~T~V~P 178 (1107)
+|+|+|++.|+++|+++|++++|++++++..|++|+|+|||+|++|++++.+++++++|++|++||+|||+|++.|+|+|
T Consensus 85 iw~~~f~~~l~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~~tglVVDiG~~~t~v~P 164 (375)
T PTZ00452 85 IWHHAFYNELCMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGKTIGLVVDSGEGVTHCVP 164 (375)
T ss_pred HHHHHHHhhcCCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCCceeeeecCCCCcceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccCCCHHHHHHHHHhceeeccc
Q psy9135 179 VYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTM 258 (1107)
Q Consensus 179 V~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~iKe~~c~v~~~ 258 (1107)
|+||+++.++++++++||+++|++|.++ |++.+..+ . ...+..++++|||++|||+.+
T Consensus 165 V~dG~~l~~~~~r~~~gG~~lt~~L~~l--------------L~~~~~~~----~----~~~~~~~~~~iKe~~c~v~~d 222 (375)
T PTZ00452 165 VFEGHQIPQAITKINLAGRLCTDYLTQI--------------LQELGYSL----T----EPHQRIIVKNIKERLCYTALD 222 (375)
T ss_pred EECCEEeccceEEeeccchHHHHHHHHH--------------HHhcCCCC----C----CHHHHHHHHHHHHHhccccCc
Confidence 9999999999999999999999999999 76665332 1 112467899999999999954
Q ss_pred hh-HHHHHhcCCCCCCCCCeeeecCCCcccccCccchhhhhhhhcchhhhhhhHHHHHHhhhhhcccCCCcccccccccc
Q psy9135 259 ER-SAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQYFPFR 337 (1107)
Q Consensus 259 ~~-~~~~~~~~~~~~~~~~~~y~Lpd~~~i~i~~~~r~~~~e~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (1107)
.. +.+.... .....+.|+||||+.|.+
T Consensus 223 ~~~e~~~~~~----~~~~~~~y~LPDg~~i~l------------------------------------------------ 250 (375)
T PTZ00452 223 PQDEKRIYKE----SNSQDSPYKLPDGNILTI------------------------------------------------ 250 (375)
T ss_pred HHHHHHHhhc----cCCcCceEECCCCCEEEe------------------------------------------------
Confidence 32 2221111 113456799999988655
Q ss_pred ccccCCCcchhhhccCCcccccccchhccccccCCccchhhhhhcccccccccccchhhccccccccCCCCCCCcccccc
Q psy9135 338 CWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLNNNVIPDWCNLSV 417 (1107)
Q Consensus 338 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 417 (1107)
T Consensus 251 -------------------------------------------------------------------------------- 250 (375)
T PTZ00452 251 -------------------------------------------------------------------------------- 250 (375)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCCcccccCCcccccccccccCC---CCCCCCHHHHHHHHHhccCccchhhhhccEEEEcCCCCccChHHH
Q psy9135 418 LGTDLKKSVNPYLHFPVSGHIRETAFEVLFEL---DLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYR 494 (1107)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~er~~~pE~lF~p---~~~~~gL~e~I~~sI~~~~~d~r~~L~~nIvLtGG~S~ipGf~eR 494 (1107)
+.|||+|||+||+| +.+..||+++|.+||++||+|+|++|++||||+||+|++|||.+|
T Consensus 251 ------------------~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~R 312 (375)
T PTZ00452 251 ------------------KSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANR 312 (375)
T ss_pred ------------------ehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHH
Confidence 57899999999999 567889999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCccccccceeEEEEcCCCCCccccchhHHhhcCCcccccccccHHHHHhcCC
Q psy9135 495 LLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAYLNNNM 558 (1107)
Q Consensus 495 L~~EL~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~aW~Ggsilasl~~f~~~~ITk~eYeE~G~ 558 (1107)
|++||+++.|.. .+++|.+++ +|++++|+||||+|++++|+++||||+||+|+|+
T Consensus 313 L~~El~~~~p~~--------~~v~v~~~~-~r~~~aW~GgSilasl~~f~~~~vtk~eYeE~G~ 367 (375)
T PTZ00452 313 LSNELTNLVPSQ--------LKIQVAAPP-DRRFSAWIGGSIQCTLSTQQPQWIKRQEYDEQGP 367 (375)
T ss_pred HHHHHHHhCCCC--------ceeEEecCC-CcceeEEECchhhcCccchhhhEeEHHHHhccCc
Confidence 999999999863 378998876 9999999999999999999999999999999998
No 2
>KOG0676|consensus
Probab=100.00 E-value=1.9e-68 Score=595.75 Aligned_cols=340 Identities=28% Similarity=0.469 Sum_probs=298.7
Q ss_pred CCCCeEEEecCCceeEEeeecCcccccccccceeccCCccc------cceeccC--------------chhhHHHHHHHH
Q psy9135 40 FQPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL------RNLYEYK--------------DADDLYGLLIEF 99 (1107)
Q Consensus 40 ~~~~~iViD~GS~~~K~G~age~~P~~i~ps~v~~~~~~~~------~~~~~~~--------------~~~~~~~~le~i 99 (1107)
.+.++||||+||..||+|||||+.|+.++||++|+++.... ++.++|+ +.+.+|++|+.|
T Consensus 5 ~~~~~vViDnGsg~~KaGfag~~~P~~v~ps~vg~~~~~~~~~~~~~~~~~vg~~a~~~~~l~~Pie~Giv~~wd~me~i 84 (372)
T KOG0676|consen 5 DDIQAVVIDNGSGFVKAGFAGDDAPRAVFPSIVGRPRHQGVMAGMTQKDTYVGDEAESKRTLKYPIERGIVTDWDDMEKI 84 (372)
T ss_pred CCcceEEEECCCceeecccCCCCCCceecceeccccccccccccccccccccchhhhccccccCccccccccchHHHHHH
Confidence 45689999999999999999999999999999999775432 3444443 455789999999
Q ss_pred HHHHHhhccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCCceEEEEEeCCCceEEEEe
Q psy9135 100 IRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPV 179 (1107)
Q Consensus 100 ~~~~~~~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~~tglVVDiG~~~T~V~PV 179 (1107)
|+|+|++.|.++|++||+|+||++++|+.+||+|+|+|||+|++|++++..++++ |++|++||+|||+|++.|+++||
T Consensus 85 w~~if~~~L~~~Pee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yva~qavl--ya~g~ttG~VvD~G~gvt~~vPI 162 (372)
T KOG0676|consen 85 WHHLFYSELLVAPEEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYVAIQAVL--YASGRTTGLVVDSGDGVTHVVPI 162 (372)
T ss_pred HHHHHHHhhccCcccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHHHHHHHH--HHcCCeeEEEEEcCCCceeeeec
Confidence 9999999999999999999999999999999999999999999999999887777 99999999999999999999999
Q ss_pred ecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccCCCHHHHHHHHHhceeecc-c
Q psy9135 180 YEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTT-M 258 (1107)
Q Consensus 180 ~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~iKe~~c~v~~-~ 258 (1107)
+||+++++++.++++||+++|+||+.+ |.+.|+.+. .....++++++||++||++. +
T Consensus 163 ~eG~~lp~ai~~ldl~G~dlt~~l~~~--------------L~~~g~s~~--------~~~~~eIv~diKeklCyvald~ 220 (372)
T KOG0676|consen 163 YEGYALPHAILRLDLAGRDLTDYLLKQ--------------LRKRGYSFT--------TSAEFEIVRDIKEKLCYVALDF 220 (372)
T ss_pred ccccccchhhheecccchhhHHHHHHH--------------HHhcccccc--------cccHHHHHHHhHhhhccccccc
Confidence 999999999999999999999999999 777664432 23468999999999999995 3
Q ss_pred hhHHHHHhcCCCCCCCCCeeeecCCCcccccCccchhhhhhhhcchhhhhhhHHHHHHhhhhhcccCCCccccccccccc
Q psy9135 259 ERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQYFPFRC 338 (1107)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~y~Lpd~~~i~i~~~~r~~~~e~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1107)
.++.+. .+. .......|+||||+.|.+
T Consensus 221 ~~e~~~--~~~--~~~l~~~y~lPDg~~i~i------------------------------------------------- 247 (372)
T KOG0676|consen 221 EEEEET--ANT--SSSLESSYELPDGQKITI------------------------------------------------- 247 (372)
T ss_pred chhhhc--ccc--cccccccccCCCCCEEec-------------------------------------------------
Confidence 333222 111 113445588998887554
Q ss_pred cccCCCcchhhhccCCcccccccchhccccccCCccchhhhhhcccccccccccchhhccccccccCCCCCCCccccccc
Q psy9135 339 WVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLNNNVIPDWCNLSVL 418 (1107)
Q Consensus 339 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 418 (1107)
T Consensus 248 -------------------------------------------------------------------------------- 247 (372)
T KOG0676|consen 248 -------------------------------------------------------------------------------- 247 (372)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCcccccCCcccccccccccCC---CCCCCCHHHHHHHHHhccCccchhhhhccEEEEcCCCCccChHHHH
Q psy9135 419 GTDLKKSVNPYLHFPVSGHIRETAFEVLFEL---DLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRL 495 (1107)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~er~~~pE~lF~p---~~~~~gL~e~I~~sI~~~~~d~r~~L~~nIvLtGG~S~ipGf~eRL 495 (1107)
+.|||+|||+||+| +.+..||++++.+||.+||+|+|++||+||||+||+|++|||.+||
T Consensus 248 -----------------~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl 310 (372)
T KOG0676|consen 248 -----------------GNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIVLSGGTTMFPGLADRL 310 (372)
T ss_pred -----------------CCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheEEeCCcccchhHHHHH
Confidence 56999999999998 6789999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCccccccceeEEEEcCCCCCccccchhHHhhcCCcccccccccHHHHHhcCCCCcc
Q psy9135 496 LQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAYLNNNMTYME 562 (1107)
Q Consensus 496 ~~EL~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~aW~Ggsilasl~~f~~~~ITk~eYeE~G~~~~~ 562 (1107)
++||+.+.|.. .+++|+++| ++.+++|+||||+|++++|+++||||+||+|+|+...|
T Consensus 311 ~kEl~~l~P~~--------~~ikv~~pp-~r~~s~WlGgSIlaslstfq~~witk~eY~e~g~~~~~ 368 (372)
T KOG0676|consen 311 QKELQALAPST--------IKIKVIAPP-ERKYSAWLGGSILASLSTFQQMWITKEEYEEHGPSIIH 368 (372)
T ss_pred HHHHhhcCCCC--------cceEEecCc-ccccceecCceeEeecchHhhccccHHHHhhhCCceee
Confidence 99999999863 479999887 89999999999999999999999999999999986555
No 3
>PTZ00466 actin-like protein; Provisional
Probab=100.00 E-value=1e-66 Score=604.12 Aligned_cols=337 Identities=21% Similarity=0.391 Sum_probs=295.7
Q ss_pred CCCCeEEEecCCceeEEeeecCcccccccccceeccCCcc------ccceeccC-----------------chhhHHHHH
Q psy9135 40 FQPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNK------LRNLYEYK-----------------DADDLYGLL 96 (1107)
Q Consensus 40 ~~~~~iViD~GS~~~K~G~age~~P~~i~ps~v~~~~~~~------~~~~~~~~-----------------~~~~~~~~l 96 (1107)
+..++||||+||+++|+|||||+.|+.++||++|+++... ..+.++|+ +.+.+|+.+
T Consensus 10 ~~~~~iViD~GS~~~K~G~ag~~~P~~~~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~~~~~~~l~~Pi~~G~v~dwd~~ 89 (380)
T PTZ00466 10 YSNQPIIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYRGLLKVTYPINHGIIENWNDM 89 (380)
T ss_pred ccCCeEEEECCCCcEEEeeCCCCCCCEeccceeeeecCccccccCCCCCeEECchhhhhCcCceeCccccCCeECCHHHH
Confidence 5677999999999999999999999999999999986542 12334443 345679999
Q ss_pred HHHHHHHHhhccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCCceEEEEEeCCCceEE
Q psy9135 97 IEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATL 176 (1107)
Q Consensus 97 e~i~~~~~~~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~~tglVVDiG~~~T~V 176 (1107)
|.+|+|+| +.|+++++++||+++|++++++..|++|+|+|||+|++|++++++++++|+|++|++||+|||+|++.|+|
T Consensus 90 e~iw~~~f-~~l~v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~~tglVVD~G~~~t~v 168 (380)
T PTZ00466 90 ENIWIHVY-NSMKINSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGKTNGTVLDCGDGVCHC 168 (380)
T ss_pred HHHHHHHH-hhcccCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCCceEEEEeCCCCceEE
Confidence 99999998 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccCCCHHHHHHHHHhceeec
Q psy9135 177 LPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT 256 (1107)
Q Consensus 177 ~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~iKe~~c~v~ 256 (1107)
+||+||+++.++++++++||++++++|+++ |++.+..+. ...+.++++++||++|||+
T Consensus 169 ~PV~~G~~~~~~~~~~~~GG~~lt~~L~~l--------------L~~~~~~~~--------~~~~~~~v~~iKe~~c~v~ 226 (380)
T PTZ00466 169 VSIYEGYSITNTITRTDVAGRDITTYLGYL--------------LRKNGHLFN--------TSAEMEVVKNMKENCCYVS 226 (380)
T ss_pred EEEECCEEeecceeEecCchhHHHHHHHHH--------------HHhcCCCCC--------cHHHHHHHHHHHHhCeEec
Confidence 999999999999999999999999999999 766653321 1235789999999999999
Q ss_pred cchhHHHHHhcCCCCCCCCCeeeecCCCcccccCccchhhhhhhhcchhhhhhhHHHHHHhhhhhcccCCCccccccccc
Q psy9135 257 TMERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQYFPF 336 (1107)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~y~Lpd~~~i~i~~~~r~~~~e~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1107)
.+...... ... .......|+||||..|.+
T Consensus 227 ~d~~~e~~-~~~---~~~~~~~y~LPdg~~i~l----------------------------------------------- 255 (380)
T PTZ00466 227 FNMNKEKN-SSE---KALTTLPYILPDGSQILI----------------------------------------------- 255 (380)
T ss_pred CChHHHHh-hcc---ccccceeEECCCCcEEEE-----------------------------------------------
Confidence 54322111 111 113457899999988654
Q ss_pred cccccCCCcchhhhccCCcccccccchhccccccCCccchhhhhhcccccccccccchhhccccccccCCCCCCCccccc
Q psy9135 337 RCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLNNNVIPDWCNLS 416 (1107)
Q Consensus 337 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 416 (1107)
T Consensus 256 -------------------------------------------------------------------------------- 255 (380)
T PTZ00466 256 -------------------------------------------------------------------------------- 255 (380)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCCCCcccccCCcccccccccccCCC---CCCCCHHHHHHHHHhccCccchhhhhccEEEEcCCCCccChHH
Q psy9135 417 VLGTDLKKSVNPYLHFPVSGHIRETAFEVLFELD---LDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKY 493 (1107)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~er~~~pE~lF~p~---~~~~gL~e~I~~sI~~~~~d~r~~L~~nIvLtGG~S~ipGf~e 493 (1107)
+.|||++||+||+|. .+..||+++|.+||.+||.|+|++|++||+|+||+|++|||.+
T Consensus 256 -------------------~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~ 316 (380)
T PTZ00466 256 -------------------GSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGD 316 (380)
T ss_pred -------------------chHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHH
Confidence 578999999999994 5889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCccccccceeEEEEcCCCCCccccchhHHhhcCCcccccccccHHHHHhcCC
Q psy9135 494 RLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAYLNNNM 558 (1107)
Q Consensus 494 RL~~EL~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~aW~Ggsilasl~~f~~~~ITk~eYeE~G~ 558 (1107)
||++||+++.|.. .+++|..++ +|++++|+||||+|++++|+++||||+||+|+|+
T Consensus 317 RL~~EL~~l~p~~--------~~v~v~~~~-~r~~~aW~GgSilasl~~f~~~~itk~eYeE~G~ 372 (380)
T PTZ00466 317 RLLNEIRKFAPKD--------ITIRISAPP-ERKFSTFIGGSILASLATFKKIWISKQEFDEYGS 372 (380)
T ss_pred HHHHHHHHhCCCC--------ceEEEecCC-CCceeEEECchhhcCccchhhhEeEHHHHhhhCc
Confidence 9999999999863 378898766 8999999999999999999999999999999998
No 4
>PTZ00281 actin; Provisional
Probab=100.00 E-value=8.2e-66 Score=597.95 Aligned_cols=338 Identities=24% Similarity=0.410 Sum_probs=295.0
Q ss_pred CCCCeEEEecCCceeEEeeecCcccccccccceeccCCcc------ccceeccC-----------------chhhHHHHH
Q psy9135 40 FQPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNK------LRNLYEYK-----------------DADDLYGLL 96 (1107)
Q Consensus 40 ~~~~~iViD~GS~~~K~G~age~~P~~i~ps~v~~~~~~~------~~~~~~~~-----------------~~~~~~~~l 96 (1107)
.+.++||||+||+++|+|||||+.|+.++||+||+++... ..+.+.|+ +.+.+|+.+
T Consensus 4 ~~~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~dwd~~ 83 (376)
T PTZ00281 4 EDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDM 83 (376)
T ss_pred CcCCeEEEECCCCeEEEeeCCCCCCCeeccccceeecCcccccCcccCCeEECchhhccccCcEEeccCcCCEEcCHHHH
Confidence 4556899999999999999999999999999999876542 12333333 344679999
Q ss_pred HHHHHHHHhhccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCCceEEEEEeCCCceEE
Q psy9135 97 IEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATL 176 (1107)
Q Consensus 97 e~i~~~~~~~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~~tglVVDiG~~~T~V 176 (1107)
+.+|+|+|++.|+++|+++||++|||+++++..|++|+|+|||+|++|++++++++++++|++|++||||||+|++.|+|
T Consensus 84 e~l~~~~f~~~l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~~tglVVDiG~~~t~v 163 (376)
T PTZ00281 84 EKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHT 163 (376)
T ss_pred HHHHHHHHHhhccCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCCceEEEEECCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccCCCHHHHHHHHHhceeec
Q psy9135 177 LPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT 256 (1107)
Q Consensus 177 ~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~iKe~~c~v~ 256 (1107)
+||+||+++.++++++++||++++++|+++ |++.+..+. ...+.+++++|||++|||+
T Consensus 164 ~PV~dG~~~~~~~~~~~~GG~~lt~~L~~l--------------L~~~~~~~~--------~~~~~~~~~~iKe~~c~v~ 221 (376)
T PTZ00281 164 VPIYEGYALPHAILRLDLAGRDLTDYMMKI--------------LTERGYSFT--------TTAEREIVRDIKEKLAYVA 221 (376)
T ss_pred EEEEecccchhheeeccCcHHHHHHHHHHH--------------HHhcCCCCC--------cHHHHHHHHHHHHhcEEec
Confidence 999999999999999999999999999999 666553321 1235789999999999999
Q ss_pred c-chhHHHHHhcCCCCCCCCCeeeecCCCcccccCccchhhhhhhhcchhhhhhhHHHHHHhhhhhcccCCCcccccccc
Q psy9135 257 T-MERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQYFP 335 (1107)
Q Consensus 257 ~-~~~~~~~~~~~~~~~~~~~~~y~Lpd~~~i~i~~~~r~~~~e~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (1107)
. ...+.+.... .....+.|+||||+.|.+
T Consensus 222 ~d~~~~~~~~~~----~~~~~~~y~LPdg~~i~i---------------------------------------------- 251 (376)
T PTZ00281 222 LDFEAEMQTAAS----SSALEKSYELPDGQVITI---------------------------------------------- 251 (376)
T ss_pred CCchHHHHhhhc----CcccceeEECCCCCEEEe----------------------------------------------
Confidence 4 3332221111 113456899999988655
Q ss_pred ccccccCCCcchhhhccCCcccccccchhccccccCCccchhhhhhcccccccccccchhhccccccccCCCCCCCcccc
Q psy9135 336 FRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLNNNVIPDWCNL 415 (1107)
Q Consensus 336 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~~~ 415 (1107)
T Consensus 252 -------------------------------------------------------------------------------- 251 (376)
T PTZ00281 252 -------------------------------------------------------------------------------- 251 (376)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCCCCCcccccCCcccccccccccCC---CCCCCCHHHHHHHHHhccCccchhhhhccEEEEcCCCCccChH
Q psy9135 416 SVLGTDLKKSVNPYLHFPVSGHIRETAFEVLFEL---DLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLK 492 (1107)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~er~~~pE~lF~p---~~~~~gL~e~I~~sI~~~~~d~r~~L~~nIvLtGG~S~ipGf~ 492 (1107)
+.|||++||+||+| +.+..||+++|.+||.+||+|+|++|++||||+||+|++|||.
T Consensus 252 --------------------~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~ 311 (376)
T PTZ00281 252 --------------------GNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIA 311 (376)
T ss_pred --------------------eHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHH
Confidence 56899999999999 4578899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCccccccceeEEEEcCCCCCccccchhHHhhcCCcccccccccHHHHHhcCC
Q psy9135 493 YRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAYLNNNM 558 (1107)
Q Consensus 493 eRL~~EL~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~aW~Ggsilasl~~f~~~~ITk~eYeE~G~ 558 (1107)
+||++||+++.|.. .+++|++++ +|++++|+||||+|++++|+++||||+||+|+|+
T Consensus 312 ~RL~~El~~~~p~~--------~~v~v~~~~-~r~~~aW~Ggsilasl~~f~~~~vtk~eY~E~G~ 368 (376)
T PTZ00281 312 DRMNKELTALAPST--------MKIKIIAPP-ERKYSVWIGGSILASLSTFQQMWISKEEYDESGP 368 (376)
T ss_pred HHHHHHHHHhCCCC--------cceEEecCC-CCceeEEECcccccCcccHhhceeeHHHHhhhCc
Confidence 99999999999863 378999877 8999999999999999999999999999999997
No 5
>KOG0679|consensus
Probab=100.00 E-value=5.3e-66 Score=555.62 Aligned_cols=375 Identities=20% Similarity=0.292 Sum_probs=297.7
Q ss_pred CCCCCCCeEEEecCCceeEEeeecCcccccccccceeccC---Ccc--cccee------------------ccCchhhHH
Q psy9135 37 FGSFQPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPH---TNK--LRNLY------------------EYKDADDLY 93 (1107)
Q Consensus 37 ~~~~~~~~iViD~GS~~~K~G~age~~P~~i~ps~v~~~~---~~~--~~~~~------------------~~~~~~~~~ 93 (1107)
-|..+-++||||+|||++|+||||++.|++++||.+|... ... .+.++ .-++.+++|
T Consensus 6 yggdEv~alViDpGS~~traGyaged~Pk~ilPS~~G~~tk~~~d~~~~~~~y~~~~ai~~pr~gmEv~~~i~nGlv~dW 85 (426)
T KOG0679|consen 6 YGGDEVSALVIDPGSHTTRAGYAGEDSPKAILPSVYGKVTKTDGDAEDKKGYYVDENAIHVPRPGMEVKTPIKNGLVEDW 85 (426)
T ss_pred ccccccceEEEeCCCceEeccccCCCCccccccceeeeeecccCccccccceEeechhccCCCCCCeeccchhcCCcccH
Confidence 3567788999999999999999999999999999999521 111 11111 123667889
Q ss_pred HHHHHHHHHHHhhccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCCceEEEEEeCCCc
Q psy9135 94 GLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSE 173 (1107)
Q Consensus 94 ~~le~i~~~~~~~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~~tglVVDiG~~~ 173 (1107)
|.++.+|+|.+.++|+++|.+||+|++||++|++.+||+++|++||+|+||+++++++++|++|++|+.||||||||++.
T Consensus 86 D~~~~~w~~~~~~~Lk~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~GrstalVvDiGa~~ 165 (426)
T KOG0679|consen 86 DLFEMQWRYAYKNQLKVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANGRSTALVVDIGATH 165 (426)
T ss_pred HHHHHHHHHHHhhhhhcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcCCCceEEEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCC---CCCc---------cccccccCCC
Q psy9135 174 ATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENP---DPYI---------VTVEDVENLS 241 (1107)
Q Consensus 174 T~V~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~---~~~~---------~~~~~~~~~~ 241 (1107)
|+|+||+||+++++++++.++||++|+..+++++.- ++++...+-.++.+... .++. .+.+..++..
T Consensus 166 ~svsPV~DG~Vlqk~vvks~laGdFl~~~~~q~l~~-~~iei~P~y~ia~k~~v~~g~~an~~~~~~~~d~tes~~~y~~ 244 (426)
T KOG0679|consen 166 TSVSPVHDGYVLQKGVVKSPLAGDFLNDQCRQLLEP-KNIEIIPMYNIASKEPVREGYPANAVLRVSIPDLTESYHNYME 244 (426)
T ss_pred ceeeeeecceEeeeeeEecccchHHHHHHHHHHHhh-cCcccCcHHHhhhcccccccCcchhhhcCChhHHHHHHHHHHH
Confidence 999999999999999999999999999999999321 12221111111111100 0110 1111113334
Q ss_pred HHHHHHHHHhceeeccchhHHHHHhcCCCCCCCCCeeeecCCCcccccCccchhhhhhhhcchhhhhhhHHHHHHhhhhh
Q psy9135 242 DSIIEDIKVCSCFVTTMERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLS 321 (1107)
Q Consensus 242 ~~~~e~iKe~~c~v~~~~~~~~~~~~~~~~~~~~~~~y~Lpd~~~i~i~~~~r~~~~e~lF~~~~~~~~~~~~~~~~~~~ 321 (1107)
..++++.|+++|.|++...+.+.... .+++.|++|||.+.++ |.+|++++|.||.|.....
T Consensus 245 ~~v~~e~ke~v~qv~dtp~de~~~~~------i~~~~~efP~g~~~~~-G~er~ripe~lF~Ps~v~~------------ 305 (426)
T KOG0679|consen 245 QRVYQEFKESVLQVSDTPFDEEVAAQ------IPTKHFEFPDGYTLDF-GAERFRIPEYLFKPSLVKS------------ 305 (426)
T ss_pred HHHHHHHHHHHHhccCCCCccccccc------CCCccccCCCCccccc-CcceeecchhhcCcchhcc------------
Confidence 66889999999999865544332221 5678899999998777 7778888888888876200
Q ss_pred cccCCCccccccccccccccCCCcchhhhccCCcccccccchhccccccCCccchhhhhhcccccccccccchhhccccc
Q psy9135 322 VASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKD 401 (1107)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 401 (1107)
.. +.+ .. .
T Consensus 306 ---------------------~s--------------------------~~~---------------~~--------~-- 313 (426)
T KOG0679|consen 306 ---------------------SS--------------------------KEA---------------GA--------T-- 313 (426)
T ss_pred ---------------------cc--------------------------ccc---------------cC--------C--
Confidence 00 000 00 0
Q ss_pred cccCCCCCCCcccccccCCCCCCCCCCCcccccCCcccccccccccCCCCCCCCHHHHHHHHHhccCccchhhhhccEEE
Q psy9135 402 VYLNNNVIPDWCNLSVLGTDLKKSVNPYLHFPVSGHIRETAFEVLFELDLDMLNIATIILDSLLKTGRDMKKPLAENILL 481 (1107)
Q Consensus 402 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~pE~lF~p~~~~~gL~e~I~~sI~~~~~d~r~~L~~nIvL 481 (1107)
++.....|+++++..||..||+|+|..|++||||
T Consensus 314 ----------------------------------------------~~~n~~lG~~~lv~sSi~~cDvdiR~~L~~nViv 347 (426)
T KOG0679|consen 314 ----------------------------------------------SHINTMLGLPHLVYSSINMCDVDIRSSLLGNVIV 347 (426)
T ss_pred ----------------------------------------------CCCccccCchHHHHhhhccChHHHHHHhhccEEE
Confidence 0001346999999999999999999999999999
Q ss_pred EcCCCCccChHHHHHHHHHhhcCCCCccccccceeEEEEcCCC--CCccccchhHHhhcCCcccccccccHHHHHhcCC
Q psy9135 482 TGGTAMTPGLKYRLLQELRTLIESPPYKDKLFIKNFKFHEFPA--KENYVAWLGGAIFAATESYNKRAIQKDAYLNNNM 558 (1107)
Q Consensus 482 tGG~S~ipGf~eRL~~EL~~~~~~~~~~~~~~~~~v~v~~~~~--~~~~~aW~Ggsilasl~~f~~~~ITk~eYeE~G~ 558 (1107)
|||+|+|+||.+||++||+...|. +++++++... +|++++|+||||||||++|+++||||+||||+|.
T Consensus 348 tGGtSliqG~s~RL~~ELs~~~P~---------srlki~as~~t~eR~~~~WlGGSILASLgtFqq~WiSKqEYEE~G~ 417 (426)
T KOG0679|consen 348 TGGTSLIQGFSERLNKELSKRAPS---------SRLKIIASGHTVERRFQSWLGGSILASLGTFQQLWISKQEYEEVGK 417 (426)
T ss_pred ecCcchhhhHHHHHHHHHHHhCCc---------ceEEEEecCceeeehhhhhhhhHHHhccccHHHHhhhHHHHHHhhh
Confidence 999999999999999999999996 3899998764 8999999999999999999999999999999997
No 6
>PTZ00452 actin; Provisional
Probab=100.00 E-value=2.8e-64 Score=583.41 Aligned_cols=332 Identities=21% Similarity=0.340 Sum_probs=289.7
Q ss_pred ccceEEEecCcceEEEeccCCCCccEEEecceeccCCCC------ccceeec-----------------CCHHhhHHHHH
Q psy9135 735 LKTGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNK------LRNLYEY-----------------KDADDLYGLLI 791 (1107)
Q Consensus 735 ~~~~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~~------~~~~~~~-----------------~~~~~~~d~le 791 (1107)
++++||||+||+++|+|||||+.|+.++||++|+++... .++.+.| +|.+.|||.++
T Consensus 4 ~~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~l~~Pi~~G~I~dwd~~e 83 (375)
T PTZ00452 4 QYPAVVIDNGSGYCKIGIAGDDAPTSCFPAIVGRSKQNDGIFSTFNKEYYVGEEAQAKRGVLAIKEPIQNGIINSWDDIE 83 (375)
T ss_pred CCCEEEEECCCCeEEEeeCCCCCcCEEecceeEEECCccccccccccceEEChhhhccccCcEEcccCcCCEEcCHHHHH
Confidence 457999999999999999999999999999999886542 1233333 26678899999
Q ss_pred HHHHHHHHhccccCCCCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCCceEEEEEcCCCceEEE
Q psy9135 792 EFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLL 871 (1107)
Q Consensus 792 ~i~~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~~tglVVDiG~~~T~v~ 871 (1107)
.+|+|+|++.|+++|+++||+++|++++++..|++++|+|||+|++|++++.++++|++||+|++||+|||+|++.|+|+
T Consensus 84 ~iw~~~f~~~l~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~~tglVVDiG~~~t~v~ 163 (375)
T PTZ00452 84 IIWHHAFYNELCMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGKTIGLVVDSGEGVTHCV 163 (375)
T ss_pred HHHHHHHHhhcCCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCCceeeeecCCCCcceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhceeeccchHHHHHHh
Q psy9135 872 PVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIAA 951 (1107)
Q Consensus 872 PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c~v~~~~~~~~~~~ 951 (1107)
||+||++++++++++++| |+++|++|+++|++++ +.+.... ..+++++|||++|||+.++..+....
T Consensus 164 PV~dG~~l~~~~~r~~~g-G~~lt~~L~~lL~~~~--------~~~~~~~----~~~~~~~iKe~~c~v~~d~~~e~~~~ 230 (375)
T PTZ00452 164 PVFEGHQIPQAITKINLA-GRLCTDYLTQILQELG--------YSLTEPH----QRIIVKNIKERLCYTALDPQDEKRIY 230 (375)
T ss_pred EEECCEEeccceEEeecc-chHHHHHHHHHHHhcC--------CCCCCHH----HHHHHHHHHHHhccccCcHHHHHHHh
Confidence 999999999999999999 9999999999998876 2232221 24589999999999998764322111
Q ss_pred cCCCCCCCCceEEeCCCCCEEEecccccccccccccCCC---CCCCcHHHHHHHHHHcCCcccccccC------------
Q psy9135 952 KNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELD---LDMLNIATIILDSLLSVASSDGREET------------ 1016 (1107)
Q Consensus 952 ~~~~~~~~~~~~y~Lpdg~~i~l~~~erf~~~E~LF~P~---~~~~gL~~~I~~sI~~~~~~d~r~~L------------ 1016 (1107)
.. .....+.|+||||+.|.+ +.|||.+||+||+|+ .+..||+++|.+||.+|| +|+|+.|
T Consensus 231 ~~---~~~~~~~y~LPDg~~i~l-~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~-~d~r~~L~~nIvL~GG~Sl 305 (375)
T PTZ00452 231 KE---SNSQDSPYKLPDGNILTI-KSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCD-LDLRQELCRNIVLSGGTTL 305 (375)
T ss_pred hc---cCCcCceEECCCCCEEEe-ehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCC-HhHHHHhhccEEEeccccc
Confidence 11 113457899999999999 899999999999996 467899999999999999 9999999
Q ss_pred -CCCCCCCCccchHHHHHhhhhCCCcccccccceeeEEEEeCCCCcceehhhhHHHhhcCCCccceeeeHHHHhhcCC-c
Q psy9135 1017 -QYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLNNNV-I 1094 (1107)
Q Consensus 1017 -~Gf~~~~~~~eRL~~EL~~l~p~~~~~~~~~~~~~~~v~~~~~~~~~~aW~GgSIlasl~~f~~~~ITk~eYeE~G~-i 1094 (1107)
||| .+||++||++++| .+ .+++|. .+++|++++|+||||+|++++|+++||||+||+|+|+ |
T Consensus 306 ~~Gf------~~RL~~El~~~~p-~~--------~~v~v~-~~~~r~~~aW~GgSilasl~~f~~~~vtk~eYeE~G~~i 369 (375)
T PTZ00452 306 FPGI------ANRLSNELTNLVP-SQ--------LKIQVA-APPDRRFSAWIGGSIQCTLSTQQPQWIKRQEYDEQGPSI 369 (375)
T ss_pred ccCH------HHHHHHHHHHhCC-CC--------ceeEEe-cCCCcceeEEECchhhcCccchhhhEeEHHHHhccCcce
Confidence 888 9999999999998 21 246675 4569999999999999999999999999999999996 8
Q ss_pred cceecc
Q psy9135 1095 PDWCNL 1100 (1107)
Q Consensus 1095 ~d~~~~ 1100 (1107)
.+++|.
T Consensus 370 ~~~k~~ 375 (375)
T PTZ00452 370 VHRKCF 375 (375)
T ss_pred eeeecC
Confidence 888763
No 7
>KOG0676|consensus
Probab=100.00 E-value=3.8e-65 Score=569.23 Aligned_cols=331 Identities=24% Similarity=0.393 Sum_probs=290.1
Q ss_pred cccceEEEecCcceEEEeccCCCCccEEEecceeccCCCCc------cceeec--------------CCHHhhHHHHHHH
Q psy9135 734 TLKTGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL------RNLYEY--------------KDADDLYGLLIEF 793 (1107)
Q Consensus 734 ~~~~~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~~~------~~~~~~--------------~~~~~~~d~le~i 793 (1107)
.+..+||||+||..+|+|||||+.|+.++||++|++++... ++.++| +|.+.|||+|+.|
T Consensus 5 ~~~~~vViDnGsg~~KaGfag~~~P~~v~ps~vg~~~~~~~~~~~~~~~~~vg~~a~~~~~l~~Pie~Giv~~wd~me~i 84 (372)
T KOG0676|consen 5 DDIQAVVIDNGSGFVKAGFAGDDAPRAVFPSIVGRPRHQGVMAGMTQKDTYVGDEAESKRTLKYPIERGIVTDWDDMEKI 84 (372)
T ss_pred CCcceEEEECCCceeecccCCCCCCceecceeccccccccccccccccccccchhhhccccccCccccccccchHHHHHH
Confidence 34589999999999999999999999999999999876432 344443 3677899999999
Q ss_pred HHHHHHhccccCCCCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCCceEEEEEcCCCceEEEEE
Q psy9135 794 IRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPV 873 (1107)
Q Consensus 794 ~~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~~tglVVDiG~~~T~v~PV 873 (1107)
|+|+|++.|.++|+++||+++|++++|+..||+++|+|||+|++|++++..++++ |++|++||+|||+|++.|+++||
T Consensus 85 w~~if~~~L~~~Pee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yva~qavl--ya~g~ttG~VvD~G~gvt~~vPI 162 (372)
T KOG0676|consen 85 WHHLFYSELLVAPEEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYVAIQAVL--YASGRTTGLVVDSGDGVTHVVPI 162 (372)
T ss_pred HHHHHHHhhccCcccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHHHHHHHH--HHcCCeeEEEEEcCCCceeeeec
Confidence 9999999999999999999999999999999999999999999999999887777 99999999999999999999999
Q ss_pred EcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhceeeccchHHHHHHhcC
Q psy9135 874 YEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIAAKN 953 (1107)
Q Consensus 874 ~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c~v~~~~~~~~~~~~~ 953 (1107)
+||+++++++.++++| |+++|+||+.+|.+++ +.++... ..++++++||++|||+.+.+.+ ....+
T Consensus 163 ~eG~~lp~ai~~ldl~-G~dlt~~l~~~L~~~g--------~s~~~~~----~~eIv~diKeklCyvald~~~e-~~~~~ 228 (372)
T KOG0676|consen 163 YEGYALPHAILRLDLA-GRDLTDYLLKQLRKRG--------YSFTTSA----EFEIVRDIKEKLCYVALDFEEE-EETAN 228 (372)
T ss_pred ccccccchhhheeccc-chhhHHHHHHHHHhcc--------ccccccc----HHHHHHHhHhhhcccccccchh-hhccc
Confidence 9999999999999999 9999999999999877 4444333 2459999999999999866433 33221
Q ss_pred CCCCCCCceEEeCCCCCEEEecccccccccccccCCC---CCCCcHHHHHHHHHHcCCcccccccC-------------C
Q psy9135 954 PDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELD---LDMLNIATIILDSLLSVASSDGREET-------------Q 1017 (1107)
Q Consensus 954 ~~~~~~~~~~y~Lpdg~~i~l~~~erf~~~E~LF~P~---~~~~gL~~~I~~sI~~~~~~d~r~~L-------------~ 1017 (1107)
.. ......|+||||+.+.+ +.|||.|||+||+|+ .+..||++++.+||.+|| +|+|+.| |
T Consensus 229 ~~--~~l~~~y~lPDg~~i~i-~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd-~dlrk~L~~nivLsGGtT~~p 304 (372)
T KOG0676|consen 229 TS--SSLESSYELPDGQKITI-GNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCD-IDLRKDLYENIVLSGGTTMFP 304 (372)
T ss_pred cc--ccccccccCCCCCEEec-CCcccccchhcCChhhcCCCCCchhHHHHHHHHhCC-hhHhHHHHhheEEeCCcccch
Confidence 11 14455699999999999 789999999999996 578999999999999999 9999999 8
Q ss_pred CCCCCCCccchHHHHHhhhhCCCcccccccceeeEEEEeCCCCcceehhhhHHHhhcCCCccceeeeHHHHhhcCC-ccc
Q psy9135 1018 YFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLNNNV-IPD 1096 (1107)
Q Consensus 1018 Gf~~~~~~~eRL~~EL~~l~p~~~~~~~~~~~~~~~v~~~~~~~~~~aW~GgSIlasl~~f~~~~ITk~eYeE~G~-i~d 1096 (1107)
|| .+||++||+.+.| +. .+++|+ ++++|.+++|+||||+||+++|+++||||+||+|+|+ |.+
T Consensus 305 Gl------~~Rl~kEl~~l~P-~~--------~~ikv~-~pp~r~~s~WlGgSIlaslstfq~~witk~eY~e~g~~~~~ 368 (372)
T KOG0676|consen 305 GL------ADRLQKELQALAP-ST--------IKIKVI-APPERKYSAWLGGSILASLSTFQQMWITKEEYEEHGPSIIH 368 (372)
T ss_pred hH------HHHHHHHHhhcCC-CC--------cceEEe-cCcccccceecCceeEeecchHhhccccHHHHhhhCCceee
Confidence 88 9999999999998 21 236775 5668899999999999999999999999999999996 788
Q ss_pred eecc
Q psy9135 1097 WCNL 1100 (1107)
Q Consensus 1097 ~~~~ 1100 (1107)
++|+
T Consensus 369 rk~f 372 (372)
T KOG0676|consen 369 RKCF 372 (372)
T ss_pred eccC
Confidence 8874
No 8
>PTZ00004 actin-2; Provisional
Probab=100.00 E-value=1.5e-63 Score=579.80 Aligned_cols=339 Identities=25% Similarity=0.393 Sum_probs=292.5
Q ss_pred CCCeEEEecCCceeEEeeecCcccccccccceeccCCcc------ccceeccC-----------------chhhHHHHHH
Q psy9135 41 QPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNK------LRNLYEYK-----------------DADDLYGLLI 97 (1107)
Q Consensus 41 ~~~~iViD~GS~~~K~G~age~~P~~i~ps~v~~~~~~~------~~~~~~~~-----------------~~~~~~~~le 97 (1107)
+.++||||+||+++|+||||++.|+.++||++|+++... .+..+.|+ +.+.+|+.++
T Consensus 5 ~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~d~d~~e 84 (378)
T PTZ00004 5 ETNAAVVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPGIMVGMEEKDCYVGDEAQDKRGILTLKYPIEHGIVTNWDDME 84 (378)
T ss_pred CCCeEEEECCCCeEEEeeCCCCCCCEEccceeEEecccccccCcCCCceEECchhhcccccceEcccCcCCEEcCHHHHH
Confidence 466899999999999999999999999999999886421 11223232 3456799999
Q ss_pred HHHHHHHhhccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCCceEEEEEeCCCceEEE
Q psy9135 98 EFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLL 177 (1107)
Q Consensus 98 ~i~~~~~~~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~~tglVVDiG~~~T~V~ 177 (1107)
.+|+|+|.+.|++++.++||+++|++++++..|++++|+|||+|++|++++++++++++|++|++||||||+|++.|+|+
T Consensus 85 ~i~~~~~~~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~~tglVVDiG~~~t~v~ 164 (378)
T PTZ00004 85 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTV 164 (378)
T ss_pred HHHHHHHHhhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCCceEEEEECCCCcEEEE
Confidence 99999998999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccCCCHHHHHHHHHhceeecc
Q psy9135 178 PVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTT 257 (1107)
Q Consensus 178 PV~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~iKe~~c~v~~ 257 (1107)
||+||+++.++++++++||++++++|+++ |++.+..+ + ...+..+++++||++|||+.
T Consensus 165 pV~dG~~l~~~~~~~~~GG~~lt~~L~~l--------------L~~~~~~~----~----~~~~~~~~~~iKe~~c~v~~ 222 (378)
T PTZ00004 165 PIYEGYSLPHAIHRLDVAGRDLTEYMMKI--------------LHERGTTF----T----TTAEKEIVRDIKEKLCYIAL 222 (378)
T ss_pred EEECCEEeecceeeecccHHHHHHHHHHH--------------HHhcCCCC----C----cHHHHHHHHHHhhcceeecC
Confidence 99999999999999999999999999999 66655322 1 11257889999999999995
Q ss_pred chhHHHHHhcCCCCCCCCCeeeecCCCcccccCccchhhhhhhhcchhhhhhhHHHHHHhhhhhcccCCCcccccccccc
Q psy9135 258 MERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQYFPFR 337 (1107)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~y~Lpd~~~i~i~~~~r~~~~e~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (1107)
+..+ +..... .......+.|+||||+.|.+
T Consensus 223 d~~~-~~~~~~-~~~~~~~~~y~lPdg~~i~l------------------------------------------------ 252 (378)
T PTZ00004 223 DFDE-EMGNSA-GSSDKYEESYELPDGTIITV------------------------------------------------ 252 (378)
T ss_pred CHHH-HHhhhh-cCccccceEEECCCCCEEEE------------------------------------------------
Confidence 4322 111111 11112357899999988654
Q ss_pred ccccCCCcchhhhccCCcccccccchhccccccCCccchhhhhhcccccccccccchhhccccccccCCCCCCCcccccc
Q psy9135 338 CWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLNNNVIPDWCNLSV 417 (1107)
Q Consensus 338 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 417 (1107)
T Consensus 253 -------------------------------------------------------------------------------- 252 (378)
T PTZ00004 253 -------------------------------------------------------------------------------- 252 (378)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCCcccccCCcccccccccccCCC---CC-CCCHHHHHHHHHhccCccchhhhhccEEEEcCCCCccChHH
Q psy9135 418 LGTDLKKSVNPYLHFPVSGHIRETAFEVLFELD---LD-MLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKY 493 (1107)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~er~~~pE~lF~p~---~~-~~gL~e~I~~sI~~~~~d~r~~L~~nIvLtGG~S~ipGf~e 493 (1107)
+.|||++||+||+|. .+ ..||+++|.+||.+||+|+|+.|++||+|+||+|++|||.+
T Consensus 253 ------------------~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~ 314 (378)
T PTZ00004 253 ------------------GSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPE 314 (378)
T ss_pred ------------------cHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHH
Confidence 578999999999984 45 78999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCccccccceeEEEEcCCCCCccccchhHHhhcCCcccccccccHHHHHhcCC
Q psy9135 494 RLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAYLNNNM 558 (1107)
Q Consensus 494 RL~~EL~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~aW~Ggsilasl~~f~~~~ITk~eYeE~G~ 558 (1107)
||++||+++.|.. .+++|.+.+ +|++++|+||||+|++++|+++||||+||+|+|+
T Consensus 315 RL~~EL~~~~p~~--------~~~~v~~~~-~~~~~aW~Ggsilas~~~f~~~~vtk~eYeE~G~ 370 (378)
T PTZ00004 315 RLTKELTTLAPST--------MKIKVVAPP-ERKYSVWIGGSILSSLPTFQQMWVTKEEYDESGP 370 (378)
T ss_pred HHHHHHHHhCCCC--------ccEEEecCC-CCceeEEECcccccCccchhhhEeEHHHHhhhCc
Confidence 9999999999863 368888776 8999999999999999999999999999999998
No 9
>PTZ00466 actin-like protein; Provisional
Probab=100.00 E-value=8.1e-63 Score=571.62 Aligned_cols=329 Identities=20% Similarity=0.346 Sum_probs=287.6
Q ss_pred cceEEEecCcceEEEeccCCCCccEEEecceeccCCCC------ccceeec-----------------CCHHhhHHHHHH
Q psy9135 736 KTGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNK------LRNLYEY-----------------KDADDLYGLLIE 792 (1107)
Q Consensus 736 ~~~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~~------~~~~~~~-----------------~~~~~~~d~le~ 792 (1107)
..+||||+||++||+|||||+.|+.++||++|+++... .++.++| +|.+.|||.+|.
T Consensus 12 ~~~iViD~GS~~~K~G~ag~~~P~~~~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~~~~~~~l~~Pi~~G~v~dwd~~e~ 91 (380)
T PTZ00466 12 NQPIIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYRGLLKVTYPINHGIIENWNDMEN 91 (380)
T ss_pred CCeEEEECCCCcEEEeeCCCCCCCEeccceeeeecCccccccCCCCCeEECchhhhhCcCceeCccccCCeECCHHHHHH
Confidence 35899999999999999999999999999999986542 1233333 356788999999
Q ss_pred HHHHHHHhccccCCCCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCCceEEEEEcCCCceEEEE
Q psy9135 793 FIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLP 872 (1107)
Q Consensus 793 i~~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~~tglVVDiG~~~T~v~P 872 (1107)
+|+|+| +.|+++|+++||+++|++++++..|++++|+|||+|++|+++++++++||+||+|++||+|||+|++.|+|+|
T Consensus 92 iw~~~f-~~l~v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~~tglVVD~G~~~t~v~P 170 (380)
T PTZ00466 92 IWIHVY-NSMKINSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGKTNGTVLDCGDGVCHCVS 170 (380)
T ss_pred HHHHHH-hhcccCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCCceEEEEeCCCCceEEEE
Confidence 999998 7899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhceeeccchHHHHHHhc
Q psy9135 873 VYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIAAK 952 (1107)
Q Consensus 873 V~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c~v~~~~~~~~~~~~ 952 (1107)
|+||+++.++++++++| |+++|++|+++|++++ +.+.... ..++++++||++|||+.++..+. ...
T Consensus 171 V~~G~~~~~~~~~~~~G-G~~lt~~L~~lL~~~~--------~~~~~~~----~~~~v~~iKe~~c~v~~d~~~e~-~~~ 236 (380)
T PTZ00466 171 IYEGYSITNTITRTDVA-GRDITTYLGYLLRKNG--------HLFNTSA----EMEVVKNMKENCCYVSFNMNKEK-NSS 236 (380)
T ss_pred EECCEEeecceeEecCc-hhHHHHHHHHHHHhcC--------CCCCcHH----HHHHHHHHHHhCeEecCChHHHH-hhc
Confidence 99999999999999999 9999999999998876 2222111 24589999999999998764322 211
Q ss_pred CCCCCCCCceEEeCCCCCEEEecccccccccccccCCC---CCCCcHHHHHHHHHHcCCcccccccC-------------
Q psy9135 953 NPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELD---LDMLNIATIILDSLLSVASSDGREET------------- 1016 (1107)
Q Consensus 953 ~~~~~~~~~~~y~Lpdg~~i~l~~~erf~~~E~LF~P~---~~~~gL~~~I~~sI~~~~~~d~r~~L------------- 1016 (1107)
. .....+.|+||||+.|.+ +.|||++||+||+|+ .+..||+++|.+||.+|| +|+|+.|
T Consensus 237 ~---~~~~~~~y~LPdg~~i~l-~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~-~d~r~~L~~nIvL~GG~Sl~ 311 (380)
T PTZ00466 237 E---KALTTLPYILPDGSQILI-GSERYRAPEVLFNPSILGLEYLGLSELIVTSITRAD-MDLRRTLYSHIVLSGGTTMF 311 (380)
T ss_pred c---ccccceeEECCCCcEEEE-chHHhcCcccccCccccCCCCCCHHHHHHHHHHhCC-hhhHHHHhhcEEEeCCcccc
Confidence 1 113457899999999999 899999999999997 378899999999999999 9999999
Q ss_pred CCCCCCCCccchHHHHHhhhhCCCcccccccceeeEEEEeCCCCcceehhhhHHHhhcCCCccceeeeHHHHhhcCC-cc
Q psy9135 1017 QYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLNNNV-IP 1095 (1107)
Q Consensus 1017 ~Gf~~~~~~~eRL~~EL~~l~p~~~~~~~~~~~~~~~v~~~~~~~~~~aW~GgSIlasl~~f~~~~ITk~eYeE~G~-i~ 1095 (1107)
||| .+||++||+++.| .+ .+++|. .+++|++++|+||||+|++++|+++||||+||+|+|+ |.
T Consensus 312 ~Gf------~~RL~~EL~~l~p-~~--------~~v~v~-~~~~r~~~aW~GgSilasl~~f~~~~itk~eYeE~G~~iv 375 (380)
T PTZ00466 312 HGF------GDRLLNEIRKFAP-KD--------ITIRIS-APPERKFSTFIGGSILASLATFKKIWISKQEFDEYGSVIL 375 (380)
T ss_pred CCH------HHHHHHHHHHhCC-CC--------ceEEEe-cCCCCceeEEECchhhcCccchhhhEeEHHHHhhhCcHhh
Confidence 888 9999999999998 21 236665 5569999999999999999999999999999999996 88
Q ss_pred ceecc
Q psy9135 1096 DWCNL 1100 (1107)
Q Consensus 1096 d~~~~ 1100 (1107)
+++|.
T Consensus 376 ~rk~~ 380 (380)
T PTZ00466 376 HRKTF 380 (380)
T ss_pred eeecC
Confidence 88763
No 10
>KOG0677|consensus
Probab=100.00 E-value=3.5e-63 Score=505.38 Aligned_cols=345 Identities=23% Similarity=0.362 Sum_probs=299.0
Q ss_pred CCeEEEecCCceeEEeeecCcccccccccceeccCCc--------cccceeccC-----------------chhhHHHHH
Q psy9135 42 PKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTN--------KLRNLYEYK-----------------DADDLYGLL 96 (1107)
Q Consensus 42 ~~~iViD~GS~~~K~G~age~~P~~i~ps~v~~~~~~--------~~~~~~~~~-----------------~~~~~~~~l 96 (1107)
..+||.|||++..|+||||+..|.++||++||||--. ..+++.+|+ +.+.+|++|
T Consensus 4 ~~viV~DnGTGfVKcGyAg~NFP~~~FPs~VGRPilR~~e~~g~~~iKD~mvGdeaselRs~L~i~YPmeNGivrnwddM 83 (389)
T KOG0677|consen 4 RNVIVCDNGTGFVKCGYAGENFPTHIFPSIVGRPILRAEEKVGNIEIKDLMVGDEASELRSLLDINYPMENGIVRNWDDM 83 (389)
T ss_pred CCeEEEeCCCceEEeccccCCCcccccchhcCchhhhhhhhccCeehhhheccchHHHHHHHHhcCCccccccccChHHH
Confidence 5688999999999999999999999999999998321 114555555 445679999
Q ss_pred HHHHHHHHhhccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCCceEEEEEeCCCceEE
Q psy9135 97 IEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATL 176 (1107)
Q Consensus 97 e~i~~~~~~~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~~tglVVDiG~~~T~V 176 (1107)
+.+|+|.|.++|+++|.+.++++|||++||.++||+|+|++||+|+|.++|++.++++++|+.|..||+|||.|.+.|||
T Consensus 84 ~h~WDytF~ekl~idp~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~tGvVvDSGDGVTHi 163 (389)
T KOG0677|consen 84 EHVWDYTFGEKLKIDPTNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHI 163 (389)
T ss_pred HHHHHhhhhhhccCCCccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccceEEEecCCCeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccCCCHHHHHHHHHhceeec
Q psy9135 177 LPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT 256 (1107)
Q Consensus 177 ~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~iKe~~c~v~ 256 (1107)
+||+||+++++-.+|++++|+++|+||.++ |...|+.+. +..+.+.+++|||++||++
T Consensus 164 ~PVye~~~l~HLtrRldvAGRdiTryLi~L--------------Ll~rGYafN--------~tADFETVR~iKEKLCYis 221 (389)
T KOG0677|consen 164 VPVYEGFVLPHLTRRLDVAGRDITRYLIKL--------------LLRRGYAFN--------HTADFETVREIKEKLCYIS 221 (389)
T ss_pred eeeecceehhhhhhhccccchhHHHHHHHH--------------HHhhccccc--------cccchHHHHHHHhhheeEe
Confidence 999999999999999999999999999999 777776553 4578999999999999999
Q ss_pred -cchhHHHHHhcCCCCCCCCCeeeecCCCcccccCccchhhhhhhhcchhhhhhhHHHHHHhhhhhcccCCCcccccccc
Q psy9135 257 -TMERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQYFP 335 (1107)
Q Consensus 257 -~~~~~~~~~~~~~~~~~~~~~~y~Lpd~~~i~i~~~~r~~~~e~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (1107)
+.+.+.+.....+ ...+.|+||||..|.+
T Consensus 222 Yd~e~e~kLalETT----vLv~~YtLPDGRvIkv---------------------------------------------- 251 (389)
T KOG0677|consen 222 YDLELEQKLALETT----VLVESYTLPDGRVIKV---------------------------------------------- 251 (389)
T ss_pred echhhhhHhhhhhe----eeeeeeecCCCcEEEe----------------------------------------------
Confidence 5555555544332 4568899999988655
Q ss_pred ccccccCCCcchhhhccCCcccccccchhccccccCCccchhhhhhcccccccccccchhhccccccccCCCCCCCcccc
Q psy9135 336 FRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLNNNVIPDWCNL 415 (1107)
Q Consensus 336 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~~~ 415 (1107)
T Consensus 252 -------------------------------------------------------------------------------- 251 (389)
T KOG0677|consen 252 -------------------------------------------------------------------------------- 251 (389)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCCCCCcccccCCcccccccccccCC---CCCCCCHHHHHHHHHhccCccchhhhhccEEEEcCCCCccChH
Q psy9135 416 SVLGTDLKKSVNPYLHFPVSGHIRETAFEVLFEL---DLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLK 492 (1107)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~er~~~pE~lF~p---~~~~~gL~e~I~~sI~~~~~d~r~~L~~nIvLtGG~S~ipGf~ 492 (1107)
|.|||.+||+||+| +.+..|+++++.++|+..|+|+|.++|++|+|+||+++-||+.
T Consensus 252 --------------------G~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLP 311 (389)
T KOG0677|consen 252 --------------------GGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLP 311 (389)
T ss_pred --------------------cceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCc
Confidence 67999999999999 4789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCC---CccccccceeEEEEcCCCCCccccchhHHhhcCC-cccccccccHHHHHhcCCC
Q psy9135 493 YRLLQELRTLIESP---PYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAAT-ESYNKRAIQKDAYLNNNMT 559 (1107)
Q Consensus 493 eRL~~EL~~~~~~~---~~~~~~~~~~v~v~~~~~~~~~~aW~Ggsilasl-~~f~~~~ITk~eYeE~G~~ 559 (1107)
.||++||+++.-.. ...+.+...++++-.+| .|.+..++||+++|++ ..-.++|+||+||+|.|..
T Consensus 312 SRLEkElkqlyl~rVL~~d~~~l~KfkiRIEdPP-rRKhMVflGGAVLA~imkD~d~fW~skqeyqE~G~~ 381 (389)
T KOG0677|consen 312 SRLEKELKQLYLDRVLKGDTDKLKKFKIRIEDPP-RRKHMVFLGGAVLAGIMKDKDEFWMSKQEYQEEGIN 381 (389)
T ss_pred HHHHHHHHHHHHHHHHcCChhhhhheEEeccCCC-ccceeEEEchHHHHHHhcCCccceecHHHHHhhhHH
Confidence 99999999863211 11222333456665555 8999999999999986 5567899999999999983
No 11
>PTZ00281 actin; Provisional
Probab=100.00 E-value=4.2e-62 Score=566.90 Aligned_cols=333 Identities=22% Similarity=0.356 Sum_probs=289.1
Q ss_pred cccceEEEecCcceEEEeccCCCCccEEEecceeccCCCC------ccceeec-----------------CCHHhhHHHH
Q psy9135 734 TLKTGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNK------LRNLYEY-----------------KDADDLYGLL 790 (1107)
Q Consensus 734 ~~~~~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~~------~~~~~~~-----------------~~~~~~~d~l 790 (1107)
++.++||||+||+++|+|||||+.|+.++||++|+++... .++.+.| +|.+.+||.+
T Consensus 4 ~~~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~dwd~~ 83 (376)
T PTZ00281 4 EDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDM 83 (376)
T ss_pred CcCCeEEEECCCCeEEEeeCCCCCCCeeccccceeecCcccccCcccCCeEECchhhccccCcEEeccCcCCEEcCHHHH
Confidence 3557999999999999999999999999999999875532 1223333 3566789999
Q ss_pred HHHHHHHHHhccccCCCCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCCceEEEEEcCCCceEE
Q psy9135 791 IEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATL 870 (1107)
Q Consensus 791 e~i~~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~~tglVVDiG~~~T~v 870 (1107)
+.+|+|+|++.|+++|+++||+++||+++++..|++++|+|||+|++|+++++++++|++|++|++||||||+|++.|+|
T Consensus 84 e~l~~~~f~~~l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~~tglVVDiG~~~t~v 163 (376)
T PTZ00281 84 EKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHT 163 (376)
T ss_pred HHHHHHHHHhhccCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCCceEEEEECCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhceeeccchHHHHHH
Q psy9135 871 LPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIA 950 (1107)
Q Consensus 871 ~PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c~v~~~~~~~~~~ 950 (1107)
+||+||+++.++++++++| |++++++|+++|.+++ +.+.... +.+++++|||++|||+.+...+...
T Consensus 164 ~PV~dG~~~~~~~~~~~~G-G~~lt~~L~~lL~~~~--------~~~~~~~----~~~~~~~iKe~~c~v~~d~~~~~~~ 230 (376)
T PTZ00281 164 VPIYEGYALPHAILRLDLA-GRDLTDYMMKILTERG--------YSFTTTA----EREIVRDIKEKLAYVALDFEAEMQT 230 (376)
T ss_pred EEEEecccchhheeeccCc-HHHHHHHHHHHHHhcC--------CCCCcHH----HHHHHHHHHHhcEEecCCchHHHHh
Confidence 9999999999999999999 9999999999998876 2222111 2458999999999999765332221
Q ss_pred hcCCCCCCCCceEEeCCCCCEEEecccccccccccccCCC---CCCCcHHHHHHHHHHcCCcccccccC-----------
Q psy9135 951 AKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELD---LDMLNIATIILDSLLSVASSDGREET----------- 1016 (1107)
Q Consensus 951 ~~~~~~~~~~~~~y~Lpdg~~i~l~~~erf~~~E~LF~P~---~~~~gL~~~I~~sI~~~~~~d~r~~L----------- 1016 (1107)
.. . +....+.|+||||+.|.+ +.|||.+||+||+|+ .+..||+++|.++|.+|| +|+|+.|
T Consensus 231 ~~-~--~~~~~~~y~LPdg~~i~i-~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~-~d~r~~L~~nIvl~GG~s 305 (376)
T PTZ00281 231 AA-S--SSALEKSYELPDGQVITI-GNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCD-VDIRKDLYGNVVLSGGTT 305 (376)
T ss_pred hh-c--CcccceeEECCCCCEEEe-eHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCC-hhHHHHHHhhccccCccc
Confidence 11 1 113457899999999999 899999999999996 467899999999999999 9999998
Q ss_pred --CCCCCCCCccchHHHHHhhhhCCCcccccccceeeEEEEeCCCCcceehhhhHHHhhcCCCccceeeeHHHHhhcCC-
Q psy9135 1017 --QYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLNNNV- 1093 (1107)
Q Consensus 1017 --~Gf~~~~~~~eRL~~EL~~l~p~~~~~~~~~~~~~~~v~~~~~~~~~~aW~GgSIlasl~~f~~~~ITk~eYeE~G~- 1093 (1107)
||| .+||++||+++.| .+ .+++|+ .+++|++++|+||||+|++++|+++||||+||+|+|+
T Consensus 306 ~~~Gf------~~RL~~El~~~~p-~~--------~~v~v~-~~~~r~~~aW~Ggsilasl~~f~~~~vtk~eY~E~G~~ 369 (376)
T PTZ00281 306 MFPGI------ADRMNKELTALAP-ST--------MKIKII-APPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPS 369 (376)
T ss_pred cCcCH------HHHHHHHHHHhCC-CC--------cceEEe-cCCCCceeEEECcccccCcccHhhceeeHHHHhhhCch
Confidence 888 9999999999998 21 246775 4558999999999999999999999999999999996
Q ss_pred ccceecc
Q psy9135 1094 IPDWCNL 1100 (1107)
Q Consensus 1094 i~d~~~~ 1100 (1107)
|.+++|.
T Consensus 370 ~~~~k~~ 376 (376)
T PTZ00281 370 IVHRKCF 376 (376)
T ss_pred heeeecC
Confidence 8888774
No 12
>PTZ00280 Actin-related protein 3; Provisional
Probab=100.00 E-value=4.6e-61 Score=566.07 Aligned_cols=351 Identities=22% Similarity=0.354 Sum_probs=286.2
Q ss_pred CCeEEEecCCceeEEeeecCcccccccccceeccCCcc---------ccceeccC-----------------chhhHHHH
Q psy9135 42 PKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNK---------LRNLYEYK-----------------DADDLYGL 95 (1107)
Q Consensus 42 ~~~iViD~GS~~~K~G~age~~P~~i~ps~v~~~~~~~---------~~~~~~~~-----------------~~~~~~~~ 95 (1107)
.++||||+||+++|+||||++.|+.++||++|+++... ..+.+.|+ +.+.+|+.
T Consensus 4 ~~~iViD~GS~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~l~~Pi~~G~I~dwd~ 83 (414)
T PTZ00280 4 LPVVVIDNGTGYTKMGYAGNTEPTYIIPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAASKSYTLTYPMKHGIVEDWDL 83 (414)
T ss_pred CCeEEEECCCCceEeeeCCCCCCCEEecceeEEeccccccccccccccCCEEEcchhhhCcCCcEEecCccCCEeCCHHH
Confidence 55899999999999999999999999999999875531 11344444 34567999
Q ss_pred HHHHHHHHHhhccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccC----------CCceEE
Q psy9135 96 LIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTL----------GVNTGL 165 (1107)
Q Consensus 96 le~i~~~~~~~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~----------g~~tgl 165 (1107)
++.+|+|+|++.|+++|.++|++++||+++++..|++++|+|||+|++|+++++.++++|+|++ |++|||
T Consensus 84 ~e~l~~~~~~~~L~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tgl 163 (414)
T PTZ00280 84 MEKFWEQCIFKYLRCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGT 163 (414)
T ss_pred HHHHHHHHHHHhhccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred EEEeCCCceEEEEeecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccCCCHHHH
Q psy9135 166 VLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSII 245 (1107)
Q Consensus 166 VVDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 245 (1107)
|||+|++.|+|+||+||+++.++++++++||+++|++|.++ |++.+..++ ......++
T Consensus 164 VVDiG~~~T~i~PV~~G~~l~~~~~~~~~GG~~lt~~L~~l--------------L~~~~~~~~--------~~~~~~~~ 221 (414)
T PTZ00280 164 VIDSGDGVTHVIPVVDGYVIGSSIKHIPLAGRDITNFIQQM--------------LRERGEPIP--------AEDILLLA 221 (414)
T ss_pred EEECCCCceEEEEEECCEEcccceEEecCcHHHHHHHHHHH--------------HHHcCCCCC--------cHHHHHHH
Confidence 99999999999999999999999999999999999999999 766654321 11246789
Q ss_pred HHHHHhceeeccchhHHHHHhcCCCCCCCCCeeeecCCCcccccCccchhhhhhhhcchhhhhhhHHHHHHhhhhhcccC
Q psy9135 246 EDIKVCSCFVTTMERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASS 325 (1107)
Q Consensus 246 e~iKe~~c~v~~~~~~~~~~~~~~~~~~~~~~~y~Lpd~~~i~i~~~~r~~~~e~lF~~~~~~~~~~~~~~~~~~~~~~~ 325 (1107)
++|||++||++.+..+ +...... .+......|.+||...
T Consensus 222 ~~iKe~~c~v~~d~~~-e~~~~~~-~~~~~~~~~~~~d~~~--------------------------------------- 260 (414)
T PTZ00280 222 QRIKEKYCYVAPDIAK-EFEKYDS-DPKNHFKKYTAVNSVT--------------------------------------- 260 (414)
T ss_pred HHHHHhcCcccCcHHH-HHHHhhc-CcccccceEECCCCCC---------------------------------------
Confidence 9999999999853221 1111100 0001223344444211
Q ss_pred CCccccccccccccccCCCcchhhhccCCcccccccchhccccccCCccchhhhhhcccccccccccchhhccccccccC
Q psy9135 326 DGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLN 405 (1107)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 405 (1107)
T Consensus 261 -------------------------------------------------------------------------------- 260 (414)
T PTZ00280 261 -------------------------------------------------------------------------------- 260 (414)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcccccccCCCCCCCCCCCcccccCCcccccccccccCCCC----CCCCHHHHHHHHHhccCccchhhhhccEEE
Q psy9135 406 NNVIPDWCNLSVLGTDLKKSVNPYLHFPVSGHIRETAFEVLFELDL----DMLNIATIILDSLLKTGRDMKKPLAENILL 481 (1107)
Q Consensus 406 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~pE~lF~p~~----~~~gL~e~I~~sI~~~~~d~r~~L~~nIvL 481 (1107)
.....+.++.|||++||+||+|.. ...||+++|.++|++||+|+|++|++||+|
T Consensus 261 ----------------------g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL 318 (414)
T PTZ00280 261 ----------------------KKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVL 318 (414)
T ss_pred ----------------------CCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEE
Confidence 000123347899999999999942 356999999999999999999999999999
Q ss_pred EcCCCCccChHHHHHHHHHhhcCCCCccc--------cccceeEEEEcCCCCCccccchhHHhhcCCcccccccccHHHH
Q psy9135 482 TGGTAMTPGLKYRLLQELRTLIESPPYKD--------KLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAY 553 (1107)
Q Consensus 482 tGG~S~ipGf~eRL~~EL~~~~~~~~~~~--------~~~~~~v~v~~~~~~~~~~aW~Ggsilasl~~f~~~~ITk~eY 553 (1107)
+||+|++|||.+||++||+++++...+.. .....+++|.+++ ++.+++|+||||+|++++|+++||||+||
T Consensus 319 ~GG~s~~~Gf~eRL~~El~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~-~~~~~~W~GgSilas~~~f~~~~itk~eY 397 (414)
T PTZ00280 319 SGGSTMFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKPIPIDVNVVSHP-RQRYAVWYGGSMLASSPEFEKVCHTKAEY 397 (414)
T ss_pred eCCcccCcCHHHHHHHHHHHhccccccccccccccccCCCCceEEEecCC-ccceeEEEChhhcccCcchhhheEEHHHH
Confidence 99999999999999999999875310000 0012468888877 89999999999999999999999999999
Q ss_pred HhcCC
Q psy9135 554 LNNNM 558 (1107)
Q Consensus 554 eE~G~ 558 (1107)
+|+|+
T Consensus 398 ~E~G~ 402 (414)
T PTZ00280 398 DEYGP 402 (414)
T ss_pred hccCh
Confidence 99998
No 13
>KOG0677|consensus
Probab=100.00 E-value=2.9e-61 Score=491.33 Aligned_cols=332 Identities=22% Similarity=0.323 Sum_probs=288.1
Q ss_pred cceEEEecCcceEEEeccCCCCccEEEecceeccCCC--------CccceeecC-----------------CHHhhHHHH
Q psy9135 736 KTGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTN--------KLRNLYEYK-----------------DADDLYGLL 790 (1107)
Q Consensus 736 ~~~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~--------~~~~~~~~~-----------------~~~~~~d~l 790 (1107)
+++||.|+|+.++|+||||+..|.++||+.||||.-. ..|++.+|+ +++.+||+|
T Consensus 4 ~~viV~DnGTGfVKcGyAg~NFP~~~FPs~VGRPilR~~e~~g~~~iKD~mvGdeaselRs~L~i~YPmeNGivrnwddM 83 (389)
T KOG0677|consen 4 RNVIVCDNGTGFVKCGYAGENFPTHIFPSIVGRPILRAEEKVGNIEIKDLMVGDEASELRSLLDINYPMENGIVRNWDDM 83 (389)
T ss_pred CCeEEEeCCCceEEeccccCCCcccccchhcCchhhhhhhhccCeehhhheccchHHHHHHHHhcCCccccccccChHHH
Confidence 4799999999999999999999999999999999432 125555554 677789999
Q ss_pred HHHHHHHHHhccccCCCCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCCceEEEEEcCCCceEE
Q psy9135 791 IEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATL 870 (1107)
Q Consensus 791 e~i~~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~~tglVVDiG~~~T~v 870 (1107)
+.+|+|.|.+.|+++|.++.+++|||+++|.+.||+|+|++||+++|.++|++-|+++++||.|..||+|||.|++.|||
T Consensus 84 ~h~WDytF~ekl~idp~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~tGvVvDSGDGVTHi 163 (389)
T KOG0677|consen 84 EHVWDYTFGEKLKIDPTNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHI 163 (389)
T ss_pred HHHHHhhhhhhccCCCccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccceEEEecCCCeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhceeeccchHH-HHH
Q psy9135 871 LPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERS-AEI 949 (1107)
Q Consensus 871 ~PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c~v~~~~~~-~~~ 949 (1107)
+||+||++++|-.+|++++ |+++|.||-++|..+| |.+. +..+.+.+++|||++||++-+... ...
T Consensus 164 ~PVye~~~l~HLtrRldvA-GRdiTryLi~LLl~rG--------YafN----~tADFETVR~iKEKLCYisYd~e~e~kL 230 (389)
T KOG0677|consen 164 VPVYEGFVLPHLTRRLDVA-GRDITRYLIKLLLRRG--------YAFN----HTADFETVREIKEKLCYISYDLELEQKL 230 (389)
T ss_pred eeeecceehhhhhhhcccc-chhHHHHHHHHHHhhc--------cccc----cccchHHHHHHHhhheeEeechhhhhHh
Confidence 9999999999999999999 9999999999999999 5554 334567999999999999955432 222
Q ss_pred HhcCCCCCCCCceEEeCCCCCEEEecccccccccccccCCC---CCCCcHHHHHHHHHHcCCcccccccC----------
Q psy9135 950 AAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELD---LDMLNIATIILDSLLSVASSDGREET---------- 1016 (1107)
Q Consensus 950 ~~~~~~~~~~~~~~y~Lpdg~~i~l~~~erf~~~E~LF~P~---~~~~gL~~~I~~sI~~~~~~d~r~~L---------- 1016 (1107)
+.+. .....+|+||||.+|++ |.|||.+||.||+|. .+.+|+.+++.++|+..| +|+|.++
T Consensus 231 alET----TvLv~~YtLPDGRvIkv-G~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaD-iD~R~~lYkhIVLSGGs 304 (389)
T KOG0677|consen 231 ALET----TVLVESYTLPDGRVIKV-GGERFEAPEALFQPHLINVEGPGVAELLFNTIQAAD-IDIRSELYKHIVLSGGS 304 (389)
T ss_pred hhhh----eeeeeeeecCCCcEEEe-cceeccCchhhcCcceeccCCCcHHHHHHHHHHHhc-cchHHHHHhHeeecCCc
Confidence 2221 15568999999999999 899999999999996 478999999999999999 9999988
Q ss_pred ---CCCCCCCCccchHHHHHhhhhCCCcccc-cccceeeEEEE-eCCCCcceehhhhHHHhhc-CCCccceeeeHHHHhh
Q psy9135 1017 ---QYFPFRCWVNTRTPEKLCCLVGWSNICC-YKLFIKNFKFH-EFPAKENYVAWLGGAIFAA-TESYNKRAIQKDVYLN 1090 (1107)
Q Consensus 1017 ---~Gf~~~~~~~eRL~~EL~~l~p~~~~~~-~~~~~~~~~v~-~~~~~~~~~aW~GgSIlas-l~~f~~~~ITk~eYeE 1090 (1107)
||+ ..||++||+++.- +...+ +.-...++++. ..|+.|.+.+|+||+++|+ +..-+++|+||+||+|
T Consensus 305 tMYPGL------PSRLEkElkqlyl-~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD~d~fW~skqeyqE 377 (389)
T KOG0677|consen 305 TMYPGL------PSRLEKELKQLYL-DRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKDKDEFWMSKQEYQE 377 (389)
T ss_pred ccCCCC------cHHHHHHHHHHHH-HHHHcCChhhhhheEEeccCCCccceeEEEchHHHHHHhcCCccceecHHHHHh
Confidence 999 9999999999864 11111 11123455555 4677999999999999999 5566789999999999
Q ss_pred cCC
Q psy9135 1091 NNV 1093 (1107)
Q Consensus 1091 ~G~ 1093 (1107)
.|.
T Consensus 378 ~G~ 380 (389)
T KOG0677|consen 378 EGI 380 (389)
T ss_pred hhH
Confidence 996
No 14
>KOG0679|consensus
Probab=100.00 E-value=2.4e-61 Score=519.68 Aligned_cols=334 Identities=20% Similarity=0.283 Sum_probs=285.0
Q ss_pred ccccceEEEecCcceEEEeccCCCCccEEEecceeccCC-----CCccce------------------eecCCHHhhHHH
Q psy9135 733 RTLKTGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHT-----NKLRNL------------------YEYKDADDLYGL 789 (1107)
Q Consensus 733 ~~~~~~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~-----~~~~~~------------------~~~~~~~~~~d~ 789 (1107)
.++.++||||+||+++|+||||++.|+.++||.+|.... .+.+.. ...+|.+.|||.
T Consensus 8 gdEv~alViDpGS~~traGyaged~Pk~ilPS~~G~~tk~~~d~~~~~~~y~~~~ai~~pr~gmEv~~~i~nGlv~dWD~ 87 (426)
T KOG0679|consen 8 GDEVSALVIDPGSHTTRAGYAGEDSPKAILPSVYGKVTKTDGDAEDKKGYYVDENAIHVPRPGMEVKTPIKNGLVEDWDL 87 (426)
T ss_pred ccccceEEEeCCCceEeccccCCCCccccccceeeeeecccCccccccceEeechhccCCCCCCeeccchhcCCcccHHH
Confidence 456689999999999999999999999999999994211 111111 123488899999
Q ss_pred HHHHHHHHHHhccccCCCCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCCceEEEEEcCCCceE
Q psy9135 790 LIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEAT 869 (1107)
Q Consensus 790 le~i~~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~~tglVVDiG~~~T~ 869 (1107)
++.+|+|.|.+.|+++|.+||++++||+++++..|++++|++||+++||++|++++++|++||+|+.||||||||++.|+
T Consensus 88 ~~~~w~~~~~~~Lk~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~GrstalVvDiGa~~~s 167 (426)
T KOG0679|consen 88 FEMQWRYAYKNQLKVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANGRSTALVVDIGATHTS 167 (426)
T ss_pred HHHHHHHHHhhhhhcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcCCCceEEEEecCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhh---------------hcc--------c
Q psy9135 870 LLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDV---------------ENL--------S 926 (1107)
Q Consensus 870 v~PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~---------------~~l--------~ 926 (1107)
|+||+||+++.+++.+.++| |++|+..++++|...+ ++..+.|.+..++. .++ .
T Consensus 168 vsPV~DG~Vlqk~vvks~la-GdFl~~~~~q~l~~~~--iei~P~y~ia~k~~v~~g~~an~~~~~~~~d~tes~~~y~~ 244 (426)
T KOG0679|consen 168 VSPVHDGYVLQKGVVKSPLA-GDFLNDQCRQLLEPKN--IEIIPMYNIASKEPVREGYPANAVLRVSIPDLTESYHNYME 244 (426)
T ss_pred eeeeecceEeeeeeEecccc-hHHHHHHHHHHHhhcC--cccCcHHHhhhcccccccCcchhhhcCChhHHHHHHHHHHH
Confidence 99999999999999999999 9999999999999886 33333333211110 011 1
Q ss_pred HHHHHHHHHhceeeccchHHHHHHhcCCCCCCCCceEEeCCCCCEEEecccccccccccccCCCC---------------
Q psy9135 927 DSIIEDIKVCSCFVTTMERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDL--------------- 991 (1107)
Q Consensus 927 ~~~v~~iKe~~c~v~~~~~~~~~~~~~~~~~~~~~~~y~Lpdg~~i~l~~~erf~~~E~LF~P~~--------------- 991 (1107)
..++++.|+.+|.|.+.+.+++.... -..++|++|||.+.++ |.|||+.||.||+|+.
T Consensus 245 ~~v~~e~ke~v~qv~dtp~de~~~~~------i~~~~~efP~g~~~~~-G~er~ripe~lF~Ps~v~~~s~~~~~~~~~n 317 (426)
T KOG0679|consen 245 QRVYQEFKESVLQVSDTPFDEEVAAQ------IPTKHFEFPDGYTLDF-GAERFRIPEYLFKPSLVKSSSKEAGATSHIN 317 (426)
T ss_pred HHHHHHHHHHHHhccCCCCccccccc------CCCccccCCCCccccc-CcceeecchhhcCcchhccccccccCCCCCc
Confidence 34788889999988866543332221 5678999999999999 9999999999999962
Q ss_pred CCCcHHHHHHHHHHcCCcccccccC-------------CCCCCCCCccchHHHHHhhhhCCCcccccccceeeEEEEeC-
Q psy9135 992 DMLNIATIILDSLLSVASSDGREET-------------QYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEF- 1057 (1107)
Q Consensus 992 ~~~gL~~~I~~sI~~~~~~d~r~~L-------------~Gf~~~~~~~eRL~~EL~~l~p~~~~~~~~~~~~~~~v~~~- 1057 (1107)
...|+++++..||..|| +|+|..| +|| .+||++||..+.|. .+++++..
T Consensus 318 ~~lG~~~lv~sSi~~cD-vdiR~~L~~nVivtGGtSliqG~------s~RL~~ELs~~~P~----------srlki~as~ 380 (426)
T KOG0679|consen 318 TMLGLPHLVYSSINMCD-VDIRSSLLGNVIVTGGTSLIQGF------SERLNKELSKRAPS----------SRLKIIASG 380 (426)
T ss_pred cccCchHHHHhhhccCh-HHHHHHhhccEEEecCcchhhhH------HHHHHHHHHHhCCc----------ceEEEEecC
Confidence 34699999999999999 9999999 999 99999999999992 25677743
Q ss_pred -CCCcceehhhhHHHhhcCCCccceeeeHHHHhhcCC
Q psy9135 1058 -PAKENYVAWLGGAIFAATESYNKRAIQKDVYLNNNV 1093 (1107)
Q Consensus 1058 -~~~~~~~aW~GgSIlasl~~f~~~~ITk~eYeE~G~ 1093 (1107)
..+|++++|+||||||||++|+++||+|+||||.|.
T Consensus 381 ~t~eR~~~~WlGGSILASLgtFqq~WiSKqEYEE~G~ 417 (426)
T KOG0679|consen 381 HTVERRFQSWLGGSILASLGTFQQLWISKQEYEEVGK 417 (426)
T ss_pred ceeeehhhhhhhhHHHhccccHHHHhhhHHHHHHhhh
Confidence 359999999999999999999999999999999997
No 15
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=100.00 E-value=3.5e-60 Score=557.63 Aligned_cols=350 Identities=30% Similarity=0.480 Sum_probs=278.7
Q ss_pred CCCCeEEEecCCceeEEeeecCcccccccccceeccCCcccc-ceec-----------------cCchhhHHHHHHHHHH
Q psy9135 40 FQPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLR-NLYE-----------------YKDADDLYGLLIEFIR 101 (1107)
Q Consensus 40 ~~~~~iViD~GS~~~K~G~age~~P~~i~ps~v~~~~~~~~~-~~~~-----------------~~~~~~~~~~le~i~~ 101 (1107)
++.++||||+||+++|+|||||+.|+.++|++++++...... ..+. .++.+.+|+.++.+|+
T Consensus 2 d~~~~vViD~Gs~~~k~G~age~~P~~v~ps~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~~~e~i~~ 81 (393)
T PF00022_consen 2 DENKPVVIDNGSSTIKAGFAGEDLPRVVIPSVVGRPRDKNSSNDYYVGDEALSPRSNLELRSPIENGVIVDWDALEEIWD 81 (393)
T ss_dssp TSSSEEEEEECSSEEEEEETTSSS-SEEEESEEEEESSSSSSSSCEETHHHHHTGTGEEEEESEETTEESSHHHHHHHHH
T ss_pred CCCCEEEEECCCceEEEEECCCCCCCCcCCCccccccccccceeEEeecccccchhheeeeeeccccccccccccccccc
Confidence 578899999999999999999999999999999988765421 1111 1245568999999999
Q ss_pred HHHhhccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCCceEEEEEeCCCceEEEEeec
Q psy9135 102 KIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYE 181 (1107)
Q Consensus 102 ~~~~~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~~tglVVDiG~~~T~V~PV~d 181 (1107)
|+|.+.|+++++++|||+++|+++++..|++++|+|||+|++|++++++++++|+|++|++||||||+|++.|+|+||+|
T Consensus 82 ~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~tglVVD~G~~~t~v~pV~d 161 (393)
T PF00022_consen 82 YIFSNLLKVDPSDHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPSPLLALYASGRTTGLVVDIGYSSTSVVPVVD 161 (393)
T ss_dssp HHHHTTT-SSGGGSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEHHHHHHHHTTBSSEEEEEESSS-EEEEEEET
T ss_pred cccccccccccccceeeeeccccCCchhhhhhhhhhhcccccceeeeeecccccccccccccccccccceeeeeeeeeee
Confidence 99998899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCC--Cccc-------cccccCCCHHHHHHHHHhc
Q psy9135 182 GVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDP--YIVT-------VEDVENLSDSIIEDIKVCS 252 (1107)
Q Consensus 182 G~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~--~~~~-------~~~~~~~~~~~~e~iKe~~ 252 (1107)
|+++.++++++++||++++++|+++ |++++.... +... .......+..+++++|+++
T Consensus 162 G~~~~~~~~~~~~GG~~lt~~l~~l--------------L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~ 227 (393)
T PF00022_consen 162 GYVLPHSIKRSPIGGDDLTEYLKEL--------------LKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEEC 227 (393)
T ss_dssp TEE-GGGBEEES-SHHHHHHHHHHH--------------HHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHH
T ss_pred ccccccccccccccHHHHHHHHHHH--------------HHhhccccccccccccccccccccccchhhhccchhccchh
Confidence 9999999999999999999999999 555322211 1100 0111223578999999999
Q ss_pred eeeccchhHHHHHhcCCCCCCCCCeeeecCCCcccccCccchhhhhhhhcchhhhhhhHHHHHHhhhhhcccCCCccccc
Q psy9135 253 CFVTTMERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQ 332 (1107)
Q Consensus 253 c~v~~~~~~~~~~~~~~~~~~~~~~~y~Lpd~~~i~i~~~~r~~~~e~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (1107)
|+++......+..... ......|+||||+.+.+ +.+|+.++|.||+|...
T Consensus 228 ~~v~~~~~~~~~~~~~----~~~~~~~~lPdg~~i~~-~~er~~~~E~LF~p~~~------------------------- 277 (393)
T PF00022_consen 228 CYVSEDPDEEQEEQAS----ENPEKSYELPDGQTIIL-GKERFRIPEILFNPSLI------------------------- 277 (393)
T ss_dssp HSGGSSHHHHHHHHHC----STTTEEEE-TTSSEEEE-STHHHHHHHTTTSGGGG-------------------------
T ss_pred hhcccccccccccccc----cccceeccccccccccc-ccccccccccccccccc-------------------------
Confidence 9999766532221111 15678899999987666 34444444444444431
Q ss_pred cccccccccCCCcchhhhccCCcccccccchhccccccCCccchhhhhhcccccccccccchhhccccccccCCCCCCCc
Q psy9135 333 YFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLNNNVIPDW 412 (1107)
Q Consensus 333 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~ 412 (1107)
T Consensus 278 -------------------------------------------------------------------------------- 277 (393)
T PF00022_consen 278 -------------------------------------------------------------------------------- 277 (393)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCCCCCCCCCcccccCCcccccccccccCCCC-------CCCCHHHHHHHHHhccCccchhhhhccEEEEcCC
Q psy9135 413 CNLSVLGTDLKKSVNPYLHFPVSGHIRETAFEVLFELDL-------DMLNIATIILDSLLKTGRDMKKPLAENILLTGGT 485 (1107)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~er~~~pE~lF~p~~-------~~~gL~e~I~~sI~~~~~d~r~~L~~nIvLtGG~ 485 (1107)
+. +..||+++|.++|++||.|+|+.|++||+||||+
T Consensus 278 -------------------------------------~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~ 320 (393)
T PF00022_consen 278 -------------------------------------GIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGS 320 (393)
T ss_dssp -------------------------------------TSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGG
T ss_pred -------------------------------------cccccccccccchhhhhhhhhhhccccccccccccceEEeccc
Confidence 11 2359999999999999999999999999999999
Q ss_pred CCccChHHHHHHHHHhhcCCCCccccccceeEEEEcCCCCCccccchhHHhhcCCcccccccccHHHHHhcCC
Q psy9135 486 AMTPGLKYRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAYLNNNM 558 (1107)
Q Consensus 486 S~ipGf~eRL~~EL~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~aW~Ggsilasl~~f~~~~ITk~eYeE~G~ 558 (1107)
|++|||.+||++||+.+.+.. .+++|+..+.+|.+++|+||||+|++++|+++||||+||+|+|+
T Consensus 321 S~i~G~~eRL~~eL~~~~~~~--------~~~~v~~~~~~~~~~aW~Ggsilasl~~f~~~~itr~eYeE~G~ 385 (393)
T PF00022_consen 321 SLIPGFKERLQQELRSLLPSS--------TKVKVIAPPSDRQFAAWIGGSILASLSSFQSFWITREEYEEYGP 385 (393)
T ss_dssp GGSTTHHHHHHHHHHHHSGTT--------STEEEE--T-TTTSHHHHHHHHHHTSGGGGGTSEEHHHHHHHGG
T ss_pred ccccchHHHHHHHhhhhhhcc--------ccceeccCchhhhhcccccceeeeccccccceeeeHHHHhCcCc
Confidence 999999999999999997763 48999876658999999999999999999999999999999998
No 16
>PTZ00004 actin-2; Provisional
Probab=100.00 E-value=3.6e-60 Score=551.58 Aligned_cols=334 Identities=21% Similarity=0.335 Sum_probs=288.4
Q ss_pred cccceEEEecCcceEEEeccCCCCccEEEecceeccCCCC------ccceeec-----------------CCHHhhHHHH
Q psy9135 734 TLKTGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNK------LRNLYEY-----------------KDADDLYGLL 790 (1107)
Q Consensus 734 ~~~~~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~~------~~~~~~~-----------------~~~~~~~d~l 790 (1107)
.+.++||||+||+++|+||||++.|+.++||++++++... .+..+.| +|.+.|||.+
T Consensus 4 ~~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~d~d~~ 83 (378)
T PTZ00004 4 EETNAAVVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPGIMVGMEEKDCYVGDEAQDKRGILTLKYPIEHGIVTNWDDM 83 (378)
T ss_pred CCCCeEEEECCCCeEEEeeCCCCCCCEEccceeEEecccccccCcCCCceEECchhhcccccceEcccCcCCEEcCHHHH
Confidence 3456899999999999999999999999999999876421 1122222 3567789999
Q ss_pred HHHHHHHHHhccccCCCCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCCceEEEEEcCCCceEE
Q psy9135 791 IEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATL 870 (1107)
Q Consensus 791 e~i~~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~~tglVVDiG~~~T~v 870 (1107)
+.+|+|+|++.|+++|+++||+++|++++++..|++++|+|||+|++|+++++++++||+|++|++||+|||+|++.|+|
T Consensus 84 e~i~~~~~~~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~~tglVVDiG~~~t~v 163 (378)
T PTZ00004 84 EKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHT 163 (378)
T ss_pred HHHHHHHHHhhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCCceEEEEECCCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhceeeccchHHHHHH
Q psy9135 871 LPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIA 950 (1107)
Q Consensus 871 ~PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c~v~~~~~~~~~~ 950 (1107)
+||+||+++.++++++++| |++++++|+++|++++ +.++..+ ..+++++|||++|||+.+...+ ..
T Consensus 164 ~pV~dG~~l~~~~~~~~~G-G~~lt~~L~~lL~~~~--------~~~~~~~----~~~~~~~iKe~~c~v~~d~~~~-~~ 229 (378)
T PTZ00004 164 VPIYEGYSLPHAIHRLDVA-GRDLTEYMMKILHERG--------TTFTTTA----EKEIVRDIKEKLCYIALDFDEE-MG 229 (378)
T ss_pred EEEECCEEeecceeeeccc-HHHHHHHHHHHHHhcC--------CCCCcHH----HHHHHHHHhhcceeecCCHHHH-Hh
Confidence 9999999999999999999 9999999999998876 2222222 2458999999999999876432 22
Q ss_pred hcCCCCCCCCceEEeCCCCCEEEecccccccccccccCCC---CC-CCcHHHHHHHHHHcCCcccccccC----------
Q psy9135 951 AKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELD---LD-MLNIATIILDSLLSVASSDGREET---------- 1016 (1107)
Q Consensus 951 ~~~~~~~~~~~~~y~Lpdg~~i~l~~~erf~~~E~LF~P~---~~-~~gL~~~I~~sI~~~~~~d~r~~L---------- 1016 (1107)
.... ......+.|+||||+.+.+ +.|||.+||+||+|+ .+ ..||+++|.+||.+|| +|+|+.|
T Consensus 230 ~~~~-~~~~~~~~y~lPdg~~i~l-~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~-~d~r~~L~~nIvl~GG~ 306 (378)
T PTZ00004 230 NSAG-SSDKYEESYELPDGTIITV-GSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCD-IDIRKDLYGNIVLSGGT 306 (378)
T ss_pred hhhc-CccccceEEECCCCCEEEE-cHHHeeCcccccChhhcCccccCChHHHHHHHHHhCC-hhHHHHHHhhEEeccch
Confidence 1111 1112357899999999999 899999999999996 34 7899999999999999 9999999
Q ss_pred ---CCCCCCCCccchHHHHHhhhhCCCcccccccceeeEEEEeCCCCcceehhhhHHHhhcCCCccceeeeHHHHhhcCC
Q psy9135 1017 ---QYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLNNNV 1093 (1107)
Q Consensus 1017 ---~Gf~~~~~~~eRL~~EL~~l~p~~~~~~~~~~~~~~~v~~~~~~~~~~aW~GgSIlasl~~f~~~~ITk~eYeE~G~ 1093 (1107)
||| .+||++||++++| .+ .+++|. .+++|++++|+||||+|++++|+++||||+||+|+|+
T Consensus 307 s~~~Gf------~~RL~~EL~~~~p-~~--------~~~~v~-~~~~~~~~aW~Ggsilas~~~f~~~~vtk~eYeE~G~ 370 (378)
T PTZ00004 307 TMYRGL------PERLTKELTTLAP-ST--------MKIKVV-APPERKYSVWIGGSILSSLPTFQQMWVTKEEYDESGP 370 (378)
T ss_pred hcCcCH------HHHHHHHHHHhCC-CC--------ccEEEe-cCCCCceeEEECcccccCccchhhhEeEHHHHhhhCc
Confidence 888 9999999999998 21 236665 4558999999999999999999999999999999996
Q ss_pred -ccceecc
Q psy9135 1094 -IPDWCNL 1100 (1107)
Q Consensus 1094 -i~d~~~~ 1100 (1107)
|.+++|+
T Consensus 371 ~~~~rk~~ 378 (378)
T PTZ00004 371 SIVHRKCF 378 (378)
T ss_pred ceEEeecC
Confidence 8888764
No 17
>KOG0680|consensus
Probab=100.00 E-value=2.9e-58 Score=483.58 Aligned_cols=359 Identities=23% Similarity=0.318 Sum_probs=303.9
Q ss_pred CCCCeEEEecCCceeEEeeecCcccccccccceeccCCccccceec-------------------cCchhhHHHHHHHHH
Q psy9135 40 FQPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYE-------------------YKDADDLYGLLIEFI 100 (1107)
Q Consensus 40 ~~~~~iViD~GS~~~K~G~age~~P~~i~ps~v~~~~~~~~~~~~~-------------------~~~~~~~~~~le~i~ 100 (1107)
|++++||+|||+|++|+|+|+++.|. ++||++.|.+.++.+ .|. -++-..+|+....+|
T Consensus 1 m~~~tiVlDNGay~~KiG~s~~~~p~-~vpNcl~kaK~~~rr-~f~~nei~ec~D~ssL~y~rp~erGyLvnW~tq~~vW 78 (400)
T KOG0680|consen 1 METTTIVLDNGAYNIKIGPSTNKKPF-VVPNCLAKAKFGRRR-SFLANEIDECKDISSLFYRRPHERGYLVNWDTQSQVW 78 (400)
T ss_pred CCCceEEEcCCceeEEeccCCCCCce-eccchhhhcccccch-hhhhhhhhhccCccceEEeehhhcceeEeehhHHHHH
Confidence 57899999999999999999999998 899999998877642 111 124456799999999
Q ss_pred HHHHhhc-cccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccC-----------CCceEEEEE
Q psy9135 101 RKIFFKY-FVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTL-----------GVNTGLVLD 168 (1107)
Q Consensus 101 ~~~~~~~-L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~-----------g~~tglVVD 168 (1107)
+++|.+. ++++.+++++++|||.++-+...+.+.|+|||+|+|.+++-...+.++.+-. ...+++|||
T Consensus 79 Dy~f~~~~~~~~~~~~~ivlTep~~~~psi~~~t~eilFEey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~~c~lVID 158 (400)
T KOG0680|consen 79 DYCFGNPGFDVEGKDHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSSECCLVID 158 (400)
T ss_pred HHHhcCCCcCcccCcceEEEecccccccchhhhHHHHHHHHhccceEeecCHHHhcchhhhccCCccccccccceEEEEe
Confidence 9999654 3466789999999999999999999999999999999999999999988761 124899999
Q ss_pred eCCCceEEEEeecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccCCCHHHHHHH
Q psy9135 169 IGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDI 248 (1107)
Q Consensus 169 iG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~i 248 (1107)
+|++.|+|+||++|.+..++++|+++||+.+|++|++.+|+||+ ++|+| ..++++|
T Consensus 159 sGysfThIip~v~g~~~~qaV~RiDvGGK~LTn~LKE~iSyR~l---NvmdE---------------------T~vVNei 214 (400)
T KOG0680|consen 159 SGYSFTHIIPVVKGIPYYQAVKRIDVGGKALTNLLKETISYRHL---NVMDE---------------------TYVVNEI 214 (400)
T ss_pred CCCceEEEehhhcCcchhhceEEeecchHHHHHHHHHHhhhhhh---cccch---------------------hhhhhhh
Confidence 99999999999999999999999999999999999999999985 56666 5789999
Q ss_pred HHhceeeccc-hhHHHHHhcCCCCCCCCCeeeecCCCcccccCccchhhhhhhhcchhhhhhhHHHHHHhhhhhcccCCC
Q psy9135 249 KVCSCFVTTM-ERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDG 327 (1107)
Q Consensus 249 Ke~~c~v~~~-~~~~~~~~~~~~~~~~~~~~y~Lpd~~~i~i~~~~r~~~~e~lF~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (1107)
||.+|||+++ ..+.+.++.. .........|.|||.++... |+.|..
T Consensus 215 KEdvcfVSqnF~~~m~~~~~k-~~~~~~~i~YvLPDF~T~k~-Gyvr~~------------------------------- 261 (400)
T KOG0680|consen 215 KEDVCFVSQNFKEDMDIAKTK-FQENKVMIDYVLPDFSTSKR-GYVRNE------------------------------- 261 (400)
T ss_pred hhheEEechhhHHHHHHHhhc-cccceeEEEEecCCcccccc-eeEecC-------------------------------
Confidence 9999999964 3334433322 11225678999999998432 111100
Q ss_pred ccccccccccccccCCCcchhhhccCCcccccccchhccccccCCccchhhhhhcccccccccccchhhccccccccCCC
Q psy9135 328 REETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLNNN 407 (1107)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 407 (1107)
T Consensus 262 -------------------------------------------------------------------------------- 261 (400)
T KOG0680|consen 262 -------------------------------------------------------------------------------- 261 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccccCCCCCCCCCCCcccccCCcccccccccccCC---CCCCCCHHHHHHHHHhccCccchhhhhccEEEEcC
Q psy9135 408 VIPDWCNLSVLGTDLKKSVNPYLHFPVSGHIRETAFEVLFEL---DLDMLNIATIILDSLLKTGRDMKKPLAENILLTGG 484 (1107)
Q Consensus 408 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~pE~lF~p---~~~~~gL~e~I~~sI~~~~~d~r~~L~~nIvLtGG 484 (1107)
......++|++.+++|||.+||+||+| +++++||+|+|.+||..||.++|+.|+.|||++||
T Consensus 262 ---------------~vk~~~d~qii~L~nErF~IPEilF~Psdi~I~q~GIpEAV~esl~~~Pe~~~p~l~~NIv~iGG 326 (400)
T KOG0680|consen 262 ---------------DVKLPEDEQIITLTNERFTIPEILFSPSDIGIQQPGIPEAVLESLSMLPEEVRPLLLENIVCIGG 326 (400)
T ss_pred ---------------CCCCCCCcceeeecccccccchhhcChhhcCcccCCchHHHHHHHHhCHHHHHHHHHhcEEEecC
Confidence 001112347888999999999999999 58899999999999999999999999999999999
Q ss_pred CCCccChHHHHHHHHHhhcCCCCccccccceeEEEEcCCCCCccccchhHHhhcCCcccccccccHHHHHhcCCCCccc
Q psy9135 485 TAMTPGLKYRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAYLNNNMTYMEF 563 (1107)
Q Consensus 485 ~S~ipGf~eRL~~EL~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~aW~Ggsilasl~~f~~~~ITk~eYeE~G~~~~~~ 563 (1107)
++++|||.+||..||++++|.+ +.++|..+ .||..-+|.||+-++.+++|..+||||+||+|||+ +|+
T Consensus 327 n~~fPgF~~RL~~Elr~l~P~d--------~~v~V~~p-~dp~~~~W~~g~~~~~~~~~~~~~itR~dy~E~G~--~~~ 394 (400)
T KOG0680|consen 327 NSNFPGFRQRLARELRSLLPAD--------WEVSVSVP-EDPITFAWEGGSEFAKTDSFEKAVITREDYEEHGP--SWC 394 (400)
T ss_pred ccCCcchHHHHHHHHHhhCCcc--------ceEEEecC-CCcceeeehhccccccCcchhcceecHhhHhhcCc--hhh
Confidence 9999999999999999999974 68999876 49999999999999999999999999999999998 665
No 18
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=100.00 E-value=8.7e-58 Score=533.18 Aligned_cols=338 Identities=25% Similarity=0.399 Sum_probs=290.4
Q ss_pred CeEEEecCCceeEEeeecCcccccccccceeccCCccc-----cceeccC-----------------chhhHHHHHHHHH
Q psy9135 43 KGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL-----RNLYEYK-----------------DADDLYGLLIEFI 100 (1107)
Q Consensus 43 ~~iViD~GS~~~K~G~age~~P~~i~ps~v~~~~~~~~-----~~~~~~~-----------------~~~~~~~~le~i~ 100 (1107)
++||||+||+++|+||+|++.|+.++||++++++.... ..++.|+ +.+.+|+.++.+|
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~P~~~G~i~d~~~~e~i~ 81 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVVFPSIVGRPKDGKGMVGDAKDTFVGDEAQEKRGGLELKYPIEHGIVENWDDMEKIW 81 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEEccceeeEecccccccCCCcceEecchhhhcCCCceecCCCcCCEEeCHHHHHHHH
Confidence 68999999999999999999999999999998865432 1233333 3456799999999
Q ss_pred HHHHhhccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCCceEEEEEeCCCceEEEEee
Q psy9135 101 RKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVY 180 (1107)
Q Consensus 101 ~~~~~~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~~tglVVDiG~~~T~V~PV~ 180 (1107)
+|+|.+.|+++++++|+++++|.++++..|++++|++||.|++|++++++++++++|++|.++|+|||+|++.|+|+||+
T Consensus 82 ~~~~~~~l~~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~pv~ 161 (373)
T smart00268 82 DYTFFNELRVEPEEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYASGRTTGLVIDSGDGVTHVVPVV 161 (373)
T ss_pred HHHHhhhcCCCCccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhCCCCEEEEEecCCCcceEEEEE
Confidence 99998889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccCCCHHHHHHHHHhceeeccchh
Q psy9135 181 EGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMER 260 (1107)
Q Consensus 181 dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~iKe~~c~v~~~~~ 260 (1107)
||+++.++++++++||++++++|.++ |++.+... . ...+...++++||++||++....
T Consensus 162 ~G~~~~~~~~~~~~GG~~l~~~l~~~--------------l~~~~~~~--~------~~~~~~~~~~iKe~~~~v~~~~~ 219 (373)
T smart00268 162 DGYVLPHAIKRIDIAGRDLTDYLKEL--------------LSERGYQF--N------SSAEFEIVREIKEKLCYVAEDFE 219 (373)
T ss_pred CCEEchhhheeccCcHHHHHHHHHHH--------------HHhcCCCC--C------cHHHHHHHHHhhhheeeecCChH
Confidence 99999999999999999999999999 55533211 0 12357899999999999996433
Q ss_pred H-HHHHhcCCCCCCCCCeeeecCCCcccccCccchhhhhhhhcchhhhhhhHHHHHHhhhhhcccCCCcccccccccccc
Q psy9135 261 S-AEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQYFPFRCW 339 (1107)
Q Consensus 261 ~-~~~~~~~~~~~~~~~~~y~Lpd~~~i~i~~~~r~~~~e~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (1107)
+ .+..... .........|+||||+.+.+
T Consensus 220 ~~~~~~~~~-~~~~~~~~~~~lpdg~~~~~-------------------------------------------------- 248 (373)
T smart00268 220 KEMKKARES-SESSKLEKTYELPDGNTIKV-------------------------------------------------- 248 (373)
T ss_pred HHHHHhhhc-ccccccceeEECCCCCEEEE--------------------------------------------------
Confidence 2 2211110 01114456788888877543
Q ss_pred ccCCCcchhhhccCCcccccccchhccccccCCccchhhhhhcccccccccccchhhccccccccCCCCCCCcccccccC
Q psy9135 340 VNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLNNNVIPDWCNLSVLG 419 (1107)
Q Consensus 340 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 419 (1107)
T Consensus 249 -------------------------------------------------------------------------------- 248 (373)
T smart00268 249 -------------------------------------------------------------------------------- 248 (373)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCcccccCCcccccccccccCC---CCCCCCHHHHHHHHHhccCccchhhhhccEEEEcCCCCccChHHHHH
Q psy9135 420 TDLKKSVNPYLHFPVSGHIRETAFEVLFEL---DLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLL 496 (1107)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~er~~~pE~lF~p---~~~~~gL~e~I~~sI~~~~~d~r~~L~~nIvLtGG~S~ipGf~eRL~ 496 (1107)
+.||+.+||+||+| +.+..||+++|.++|++||+|+|++|++||+||||+|++|||.+||+
T Consensus 249 ----------------~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~ 312 (373)
T smart00268 249 ----------------GNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLE 312 (373)
T ss_pred ----------------ChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHH
Confidence 56889999999998 45778999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCccccccceeEEEEcCCCCCccccchhHHhhcCCcccccccccHHHHHhcCC
Q psy9135 497 QELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAYLNNNM 558 (1107)
Q Consensus 497 ~EL~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~aW~Ggsilasl~~f~~~~ITk~eYeE~G~ 558 (1107)
+||+.+.|.. .++++...+ ++.+++|+||||+|++++|+++||||+||+|+|+
T Consensus 313 ~el~~~~p~~--------~~v~v~~~~-~~~~~~W~G~silas~~~f~~~~vtk~eY~E~G~ 365 (373)
T smart00268 313 KELKQLAPKK--------LKVKVIAPP-ERKYSVWLGGSILASLSTFEDMWITKKEYEEHGS 365 (373)
T ss_pred HHHHHhCCCC--------ceeEEecCC-CCccceEeCcccccCccchhhhEEEHHHHhhhCc
Confidence 9999999852 478888766 8999999999999999999999999999999997
No 19
>PTZ00280 Actin-related protein 3; Provisional
Probab=100.00 E-value=9.6e-57 Score=529.38 Aligned_cols=338 Identities=22% Similarity=0.318 Sum_probs=281.0
Q ss_pred cceEEEecCcceEEEeccCCCCccEEEecceeccCCCC---------ccceeecC-----------------CHHhhHHH
Q psy9135 736 KTGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNK---------LRNLYEYK-----------------DADDLYGL 789 (1107)
Q Consensus 736 ~~~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~~---------~~~~~~~~-----------------~~~~~~d~ 789 (1107)
.++||||+||++||+||||++.|+.++||++|+++... .++.+.|+ |.+.|||.
T Consensus 4 ~~~iViD~GS~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~l~~Pi~~G~I~dwd~ 83 (414)
T PTZ00280 4 LPVVVIDNGTGYTKMGYAGNTEPTYIIPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAASKSYTLTYPMKHGIVEDWDL 83 (414)
T ss_pred CCeEEEECCCCceEeeeCCCCCCCEEecceeEEeccccccccccccccCCEEEcchhhhCcCCcEEecCccCCEeCCHHH
Confidence 45899999999999999999999999999999875521 11233333 56788999
Q ss_pred HHHHHHHHHHhccccCCCCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhccc----------CCceEE
Q psy9135 790 LIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTL----------GVNTGL 859 (1107)
Q Consensus 790 le~i~~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~----------g~~tgl 859 (1107)
++.+|+|+|++.|+++|+++|++++||+++++..|++++|+|||+|++|+++++++++||+||+ |++||+
T Consensus 84 ~e~l~~~~~~~~L~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tgl 163 (414)
T PTZ00280 84 MEKFWEQCIFKYLRCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGT 163 (414)
T ss_pred HHHHHHHHHHHhhccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred EEEcCCCceEEEEEEcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhcee
Q psy9135 860 VLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCF 939 (1107)
Q Consensus 860 VVDiG~~~T~v~PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c~ 939 (1107)
|||+|++.|+|+||+||+++.++++++++| |+++|++|+++|++++ +.++.. ...+++++|||++||
T Consensus 164 VVDiG~~~T~i~PV~~G~~l~~~~~~~~~G-G~~lt~~L~~lL~~~~--------~~~~~~----~~~~~~~~iKe~~c~ 230 (414)
T PTZ00280 164 VIDSGDGVTHVIPVVDGYVIGSSIKHIPLA-GRDITNFIQQMLRERG--------EPIPAE----DILLLAQRIKEKYCY 230 (414)
T ss_pred EEECCCCceEEEEEECCEEcccceEEecCc-HHHHHHHHHHHHHHcC--------CCCCcH----HHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999 9999999999998876 222211 124589999999999
Q ss_pred eccchHHHHHHhcCCCCCCCCceEEeCCC---CC--EEEecccccccccccccCCCC----CCCcHHHHHHHHHHcCCcc
Q psy9135 940 VTTMERSAEIAAKNPDHKYPSGFMYPLKN---GK--KIPVSGHIRETAFEVLFELDL----DMLNIATIILDSLLSVASS 1010 (1107)
Q Consensus 940 v~~~~~~~~~~~~~~~~~~~~~~~y~Lpd---g~--~i~l~~~erf~~~E~LF~P~~----~~~gL~~~I~~sI~~~~~~ 1010 (1107)
|+.+... +....... +......|.+|| |+ .+.+ +.|||.+||+||+|+. ...||+++|.++|++|| +
T Consensus 231 v~~d~~~-e~~~~~~~-~~~~~~~~~~~d~~~g~~~~i~l-~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~-~ 306 (414)
T PTZ00280 231 VAPDIAK-EFEKYDSD-PKNHFKKYTAVNSVTKKPYTVDV-GYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCP-I 306 (414)
T ss_pred ccCcHHH-HHHHhhcC-cccccceEECCCCCCCCccEEEe-chHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCC-h
Confidence 9987532 33221111 112345789887 33 7888 8999999999999963 24699999999999999 9
Q ss_pred cccccC-------------CCCCCCCCccchHHHHHhhhhCCCccccc--------ccceeeEEEEeCCCCcceehhhhH
Q psy9135 1011 DGREET-------------QYFPFRCWVNTRTPEKLCCLVGWSNICCY--------KLFIKNFKFHEFPAKENYVAWLGG 1069 (1107)
Q Consensus 1011 d~r~~L-------------~Gf~~~~~~~eRL~~EL~~l~p~~~~~~~--------~~~~~~~~v~~~~~~~~~~aW~Gg 1069 (1107)
|+|++| ||| .+||++||+++++ .+.+.. .-....++|+ .++++++++|+||
T Consensus 307 d~r~~L~~nIvL~GG~s~~~Gf------~eRL~~El~~~~~-~~~~~~~~~~~~~~~~~~~~v~v~-~~~~~~~~~W~Gg 378 (414)
T PTZ00280 307 DCRRPLYKNIVLSGGSTMFKGF------DKRLQRDVRKRVD-RRLKKAEELSGGKLKPIPIDVNVV-SHPRQRYAVWYGG 378 (414)
T ss_pred hhHHHHhhcEEEeCCcccCcCH------HHHHHHHHHHhcc-ccccccccccccccCCCCceEEEe-cCCccceeEEECh
Confidence 999999 888 9999999999976 211000 0001235665 4447899999999
Q ss_pred HHhhcCCCccceeeeHHHHhhcCC-cccee
Q psy9135 1070 AIFAATESYNKRAIQKDVYLNNNV-IPDWC 1098 (1107)
Q Consensus 1070 SIlasl~~f~~~~ITk~eYeE~G~-i~d~~ 1098 (1107)
||+|++++|+++||||+||+|+|+ |.++.
T Consensus 379 Silas~~~f~~~~itk~eY~E~G~~i~~~~ 408 (414)
T PTZ00280 379 SMLASSPEFEKVCHTKAEYDEYGPSICRYN 408 (414)
T ss_pred hhcccCcchhhheEEHHHHhccChHheeec
Confidence 999999999999999999999996 76664
No 20
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=100.00 E-value=3.3e-56 Score=523.86 Aligned_cols=343 Identities=27% Similarity=0.431 Sum_probs=278.4
Q ss_pred cccceEEEecCcceEEEeccCCCCccEEEecceeccCCCCc-ccee-----------------ecCCHHhhHHHHHHHHH
Q psy9135 734 TLKTGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL-RNLY-----------------EYKDADDLYGLLIEFIR 795 (1107)
Q Consensus 734 ~~~~~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~~~-~~~~-----------------~~~~~~~~~d~le~i~~ 795 (1107)
++.++||||+||++||+|||||+.|+.++||+++++..... ...+ ..++.+.+|+.++.+|+
T Consensus 2 d~~~~vViD~Gs~~~k~G~age~~P~~v~ps~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~~~e~i~~ 81 (393)
T PF00022_consen 2 DENKPVVIDNGSSTIKAGFAGEDLPRVVIPSVVGRPRDKNSSNDYYVGDEALSPRSNLELRSPIENGVIVDWDALEEIWD 81 (393)
T ss_dssp TSSSEEEEEECSSEEEEEETTSSS-SEEEESEEEEESSSSSSSSCEETHHHHHTGTGEEEEESEETTEESSHHHHHHHHH
T ss_pred CCCCEEEEECCCceEEEEECCCCCCCCcCCCccccccccccceeEEeecccccchhheeeeeeccccccccccccccccc
Confidence 45689999999999999999999999999999998876531 0111 13466778999999999
Q ss_pred HHHHhccccCCCCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCCceEEEEEcCCCceEEEEEEc
Q psy9135 796 KIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYE 875 (1107)
Q Consensus 796 ~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~~tglVVDiG~~~T~v~PV~d 875 (1107)
|+|.+.|+++++++||++++|+++++..|++++|+|||+|++|+++++++++||+|++|++||||||+|++.|+|+||+|
T Consensus 82 ~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~tglVVD~G~~~t~v~pV~d 161 (393)
T PF00022_consen 82 YIFSNLLKVDPSDHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPSPLLALYASGRTTGLVVDIGYSSTSVVPVVD 161 (393)
T ss_dssp HHHHTTT-SSGGGSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEHHHHHHHHTTBSSEEEEEESSS-EEEEEEET
T ss_pred cccccccccccccceeeeeccccCCchhhhhhhhhhhcccccceeeeeecccccccccccccccccccceeeeeeeeeee
Confidence 99998999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchh------h-hhcccHHHHHHHHHhceeeccchHHHH
Q psy9135 876 GVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVE------D-VENLSDSIIEDIKVCSCFVTTMERSAE 948 (1107)
Q Consensus 876 G~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~------~-~~~l~~~~v~~iKe~~c~v~~~~~~~~ 948 (1107)
|+++.++++++++| |++++++|+++|++++..+.+ .+.+... . .......+++++|+++|||+.+....+
T Consensus 162 G~~~~~~~~~~~~G-G~~lt~~l~~lL~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~ 238 (393)
T PF00022_consen 162 GYVLPHSIKRSPIG-GDDLTEYLKELLKERNIQINP--SYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQ 238 (393)
T ss_dssp TEE-GGGBEEES-S-HHHHHHHHHHHHHHT-SS--G--CCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHH
T ss_pred cccccccccccccc-HHHHHHHHHHHHHhhcccccc--ccccccccccccccccchhhhccchhccchhhhccccccccc
Confidence 99999999999999 999999999999997532211 1221111 0 011235799999999999998876422
Q ss_pred HHhcCCCCCCCCceEEeCCCCCEEEecccccccccccccCCCC---CC-------CcHHHHHHHHHHcCCcccccccC--
Q psy9135 949 IAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDL---DM-------LNIATIILDSLLSVASSDGREET-- 1016 (1107)
Q Consensus 949 ~~~~~~~~~~~~~~~y~Lpdg~~i~l~~~erf~~~E~LF~P~~---~~-------~gL~~~I~~sI~~~~~~d~r~~L-- 1016 (1107)
...... .....|+||||+.+.+ +.+||.+||+||+|+. +. .||+++|.++|++|| +|+|+.|
T Consensus 239 ~~~~~~----~~~~~~~lPdg~~i~~-~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~-~d~r~~l~~ 312 (393)
T PF00022_consen 239 EEQASE----NPEKSYELPDGQTIIL-GKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCP-IDLRKELLS 312 (393)
T ss_dssp HHHHCS----TTTEEEE-TTSSEEEE-STHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTST-TTTHHHHHT
T ss_pred cccccc----ccceeccccccccccc-ccccccccccccccccccccccccccccchhhhhhhhhhhccc-ccccccccc
Confidence 222111 5668899999999999 8999999999999963 23 399999999999999 9999988
Q ss_pred -----------CCCCCCCCccchHHHHHhhhhCCCcccccccceeeEEEEeCCCCcceehhhhHHHhhcCCCccceeeeH
Q psy9135 1017 -----------QYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQK 1085 (1107)
Q Consensus 1017 -----------~Gf~~~~~~~eRL~~EL~~l~p~~~~~~~~~~~~~~~v~~~~~~~~~~aW~GgSIlasl~~f~~~~ITk 1085 (1107)
||| .+||++||+.+.|. . ..++|...+.+|.+++|+||||+|++++|+++||||
T Consensus 313 nIvl~GG~S~i~G~------~eRL~~eL~~~~~~-~--------~~~~v~~~~~~~~~~aW~Ggsilasl~~f~~~~itr 377 (393)
T PF00022_consen 313 NIVLTGGSSLIPGF------KERLQQELRSLLPS-S--------TKVKVIAPPSDRQFAAWIGGSILASLSSFQSFWITR 377 (393)
T ss_dssp TEEEESGGGGSTTH------HHHHHHHHHHHSGT-T--------STEEEE--T-TTTSHHHHHHHHHHTSGGGGGTSEEH
T ss_pred ceEEecccccccch------HHHHHHHhhhhhhc-c--------ccceeccCchhhhhcccccceeeeccccccceeeeH
Confidence 888 99999999999872 1 257776433389999999999999999999999999
Q ss_pred HHHhhcCC-ccceecc
Q psy9135 1086 DVYLNNNV-IPDWCNL 1100 (1107)
Q Consensus 1086 ~eYeE~G~-i~d~~~~ 1100 (1107)
+||+|+|+ +.+++|.
T Consensus 378 ~eYeE~G~~~i~rkc~ 393 (393)
T PF00022_consen 378 EEYEEYGPSIIHRKCF 393 (393)
T ss_dssp HHHHHHGGGGHHHHT-
T ss_pred HHHhCcCcceeeecCC
Confidence 99999996 7777763
No 21
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=100.00 E-value=2.4e-55 Score=512.17 Aligned_cols=338 Identities=26% Similarity=0.405 Sum_probs=288.2
Q ss_pred eEEEecCCceeEEeeecCcccccccccceeccCCcc------ccceeccC------------------chhhHHHHHHHH
Q psy9135 44 GVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNK------LRNLYEYK------------------DADDLYGLLIEF 99 (1107)
Q Consensus 44 ~iViD~GS~~~K~G~age~~P~~i~ps~v~~~~~~~------~~~~~~~~------------------~~~~~~~~le~i 99 (1107)
+||||+||+++|+||+|++.|+.++||++++++... ....+.|+ +.+.+|+.++.+
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~P~~~G~i~d~~~~e~~ 80 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVVFPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGLGLELIYPIEHGIVVDWDDMEKI 80 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceEeeccceeecCcccccccCCCceEEchhhhhCCCCceEEcccccCCEEeCHHHHHHH
Confidence 589999999999999999999999999999876442 12222222 345679999999
Q ss_pred HHHHHhhccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCCceEEEEEeCCCceEEEEe
Q psy9135 100 IRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPV 179 (1107)
Q Consensus 100 ~~~~~~~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~~tglVVDiG~~~T~V~PV 179 (1107)
|+|+|.+.+..+++++|+++++|.++++..|++++|+|||++++|++++++++++++|++|.++|||||+|++.|+|+||
T Consensus 81 ~~~~~~~~l~~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~i~pv 160 (371)
T cd00012 81 WDHLFFNELKVNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGRTTGLVVDSGDGVTHVVPV 160 (371)
T ss_pred HHHHHHHhcCCCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCCCeEEEEECCCCeeEEEEE
Confidence 99999888988899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccCCCHHHHHHHHHhceeeccch
Q psy9135 180 YEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTME 259 (1107)
Q Consensus 180 ~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~iKe~~c~v~~~~ 259 (1107)
+||+++.++++++++||++++++|.++ |++.+..+. ...+...++++||++||++...
T Consensus 161 ~~G~~~~~~~~~~~~GG~~l~~~l~~~--------------l~~~~~~~~--------~~~~~~~~~~iKe~~~~v~~~~ 218 (371)
T cd00012 161 YDGYVLPHAIKRLDLAGRDLTRYLKEL--------------LRERGYELN--------SSDEREIVRDIKEKLCYVALDI 218 (371)
T ss_pred ECCEEchhhheeccccHHHHHHHHHHH--------------HHhcCCCcc--------chhHHHHHHHHHHhheeecCCH
Confidence 999999999999999999999999999 655542110 2246789999999999999654
Q ss_pred hHHHHHhcCCCCCCCCCeeeecCCCcccccCccchhhhhhhhcchhhhhhhHHHHHHhhhhhcccCCCcccccccccccc
Q psy9135 260 RSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQYFPFRCW 339 (1107)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~y~Lpd~~~i~i~~~~r~~~~e~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (1107)
......... ........|.|||++.+.+
T Consensus 219 ~~~~~~~~~--~~~~~~~~~~lpd~~~i~~-------------------------------------------------- 246 (371)
T cd00012 219 EEEQDKSAK--ETSLLEKTYELPDGRTIKV-------------------------------------------------- 246 (371)
T ss_pred HHHHHhhhc--cCCccceeEECCCCeEEEE--------------------------------------------------
Confidence 332111111 1114567788888887654
Q ss_pred ccCCCcchhhhccCCcccccccchhccccccCCccchhhhhhcccccccccccchhhccccccccCCCCCCCcccccccC
Q psy9135 340 VNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLNNNVIPDWCNLSVLG 419 (1107)
Q Consensus 340 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 419 (1107)
T Consensus 247 -------------------------------------------------------------------------------- 246 (371)
T cd00012 247 -------------------------------------------------------------------------------- 246 (371)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCcccccCCcccccccccccCCC---CCCCCHHHHHHHHHhccCccchhhhhccEEEEcCCCCccChHHHHH
Q psy9135 420 TDLKKSVNPYLHFPVSGHIRETAFEVLFELD---LDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLL 496 (1107)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~er~~~pE~lF~p~---~~~~gL~e~I~~sI~~~~~d~r~~L~~nIvLtGG~S~ipGf~eRL~ 496 (1107)
+.|||.+||+||+|. ....+|+++|.++|++||.|.|+.+++||+||||+|++|||.+||+
T Consensus 247 ----------------~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~ 310 (371)
T cd00012 247 ----------------GNERFRAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQ 310 (371)
T ss_pred ----------------ChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHH
Confidence 457888888888883 4678999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCccccccceeEEEEcCCCCCccccchhHHhhcCCcccccccccHHHHHhcCC
Q psy9135 497 QELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAYLNNNM 558 (1107)
Q Consensus 497 ~EL~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~aW~Ggsilasl~~f~~~~ITk~eYeE~G~ 558 (1107)
+||+.+.|... ...+++...+ +|.+++|+|||++|++++|+++||||+||+|+|+
T Consensus 311 ~el~~~~~~~~------~~~~~~~~~~-~~~~~aw~G~si~as~~~~~~~~itk~eY~E~G~ 365 (371)
T cd00012 311 KELLKLAPPSK------DTKVKVIAPP-ERKYSVWLGGSILASLSTFQQLWITKEEYEEHGP 365 (371)
T ss_pred HHHHHhCCccc------ceEEEEccCC-CccccEEeCchhhcCchhhhheEeeHHHHhhhCc
Confidence 99999998521 2357777655 8999999999999999999999999999999998
No 22
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=2.3e-55 Score=509.56 Aligned_cols=379 Identities=25% Similarity=0.359 Sum_probs=299.5
Q ss_pred CCeEEEecCCceeEEeeecCcccccccccceeccC-------Cccccceecc-------------------CchhhHHHH
Q psy9135 42 PKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPH-------TNKLRNLYEY-------------------KDADDLYGL 95 (1107)
Q Consensus 42 ~~~iViD~GS~~~K~G~age~~P~~i~ps~v~~~~-------~~~~~~~~~~-------------------~~~~~~~~~ 95 (1107)
.++|||||||+++|+||||++.|++++|+++++.+ .....+.+++ ++.+.+|++
T Consensus 6 ~~~iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~~~~~~~~~~p~~~g~i~~W~~ 85 (444)
T COG5277 6 VPTIVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDNSLLELRYPIENGIILNWDA 85 (444)
T ss_pred CCeEEEeCCCceEEeeecCCCCceeecccccccccccccccccccccccccCchhhhccCCccceeecccccCccCCcHH
Confidence 44599999999999999999999999999999985 1111122222 245567999
Q ss_pred HHHHHHHHHhh--ccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCCc--eEEEEEeCC
Q psy9135 96 LIEFIRKIFFK--YFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVN--TGLVLDIGY 171 (1107)
Q Consensus 96 le~i~~~~~~~--~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~~--tglVVDiG~ 171 (1107)
++++|+|+|++ .+..++.+||+++|||++++..+|++++|++||+|+||++++..+++|++|+.|++ +|||||+|+
T Consensus 86 ~e~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~~~g~ViD~G~ 165 (444)
T COG5277 86 MEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSSDETGLVIDSGD 165 (444)
T ss_pred HHHHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCCCceEEEEcCC
Confidence 99999999998 68888999999999999999999999999999999999999999999999999999 999999999
Q ss_pred CceEEEEeecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCC-CCccccccccCCCHHHHHHHHH
Q psy9135 172 SEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPD-PYIVTVEDVENLSDSIIEDIKV 250 (1107)
Q Consensus 172 ~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~~~e~iKe 250 (1107)
+.|+|+||+||.++.++++|+++||++++++|.++ |....... .|....+.. ..+.++++.+|+
T Consensus 166 ~~t~v~PV~DG~~l~~a~~ri~~gG~~it~~l~~l--------------L~~~~~~~~~~~l~~e~~-~~~~ei~~~ik~ 230 (444)
T COG5277 166 SVTHVIPVVDGIVLPKAVKRIDIGGRDITDYLKKL--------------LREKYPPSRGYNLKSELV-EYSSEIVNEIKE 230 (444)
T ss_pred CceeeEeeeccccccccceeeecCcHHHHHHHHHH--------------HhhcccccCCcccccccc-cccHHHHHHHHH
Confidence 99999999999999999999999999999999999 54432100 011111110 246899999999
Q ss_pred hce-------eeccc-hhHHHHHhc------------CCCCCCCCCeeeecCCCcccccCccchhhhhhhhcchhh--hh
Q psy9135 251 CSC-------FVTTM-ERSAEIAAK------------NPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDL--DM 308 (1107)
Q Consensus 251 ~~c-------~v~~~-~~~~~~~~~------------~~~~~~~~~~~y~Lpd~~~i~i~~~~r~~~~e~lF~~~~--~~ 308 (1107)
++| |+... ....+.... ...........+.+||++.+.+...+|+.++|.+|+|.+ ..
T Consensus 231 e~~~~~~~~~y~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~e~rf~~pE~lF~pe~~~~~ 310 (444)
T COG5277 231 EVCETDDESAYVSLDAEEEFEEEEEKPAEKSTESTFQLSKETSIAKESKELPDGEEIEFGNEERFKAPEILFKPELPISG 310 (444)
T ss_pred hhccccccccchhhcchHHHHHHhhhhhhhcccccccccchhccccccccCCCCceEeechhhhhhcchhhcCCcccccc
Confidence 999 77742 222111111 011123456788999999999854449999999999884 10
Q ss_pred hhHHHHHHhhhhhcccCCCccccccccccccccCCCcchhhhccCCcccccccchhccccccCCccchhhhhhccccccc
Q psy9135 309 LNIATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFA 388 (1107)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 388 (1107)
+.. ++. .+
T Consensus 311 l~~-------------------~~~-------------------------------------~~---------------- 318 (444)
T COG5277 311 LEE-------------------AGK-------------------------------------ID---------------- 318 (444)
T ss_pred ccc-------------------ccc-------------------------------------ch----------------
Confidence 000 000 00
Q ss_pred ccccchhhccccccccCCCCCCCcccccccCCCCCCCCCCCcccccCCcccccccccccCC---CCCCCCHHHHHHHHHh
Q psy9135 389 ATESYNKRAIQKDVYLNNNVIPDWCNLSVLGTDLKKSVNPYLHFPVSGHIRETAFEVLFEL---DLDMLNIATIILDSLL 465 (1107)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~pE~lF~p---~~~~~gL~e~I~~sI~ 465 (1107)
...++. .++.. .+.| +.+..||++++.++|.
T Consensus 319 ---~~~~~~--------------------------------------~~~~~-----~~~~~~~~~~~~gl~e~v~~si~ 352 (444)
T COG5277 319 ---ESKQEL--------------------------------------VAENY-----EISPTNLGNDIAGLPELVYQSIQ 352 (444)
T ss_pred ---hhhhhh--------------------------------------hhhcc-----ccccccccccccchHHHHHHHHH
Confidence 000000 00111 2222 4678999999999999
Q ss_pred ccCccchhhhhccEEEEcCCCCccChHHHHHHHHHhhcCCCCccccccceeEEEEcCCCCCccccchhHHhhcCCccccc
Q psy9135 466 KTGRDMKKPLAENILLTGGTAMTPGLKYRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNK 545 (1107)
Q Consensus 466 ~~~~d~r~~L~~nIvLtGG~S~ipGf~eRL~~EL~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~aW~Ggsilasl~~f~~ 545 (1107)
+||.+.|+.|++||+||||+|++|||.+||++||+.+.|. .+.++|..++ +|.+.+|+||||||++++|++
T Consensus 353 ~~~~~~r~~l~~nivitGGts~~pg~~~Rl~~el~~~~p~--------~~~v~v~~~~-~~~~~~W~GaSila~~~~~~~ 423 (444)
T COG5277 353 ICDEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPS--------IWKVSVIPPP-DPSLDAWLGASILASLETFQQ 423 (444)
T ss_pred hccHHHHHHHhhCEEEecCccCCCCHHHHHHHHHHhhcCC--------CCceeeecCC-chhhccccchhhhccccchhh
Confidence 9999999999999999999999999999999999999997 3689999887 999999999999999999999
Q ss_pred ccccHHHHHhcCCCCcc
Q psy9135 546 RAIQKDAYLNNNMTYME 562 (1107)
Q Consensus 546 ~~ITk~eYeE~G~~~~~ 562 (1107)
+||||+||+|+|+...|
T Consensus 424 ~~itk~eY~e~G~~~~~ 440 (444)
T COG5277 424 LWITKEEYEEHGPDILQ 440 (444)
T ss_pred eEeeHHHhhhhhhHHHh
Confidence 99999999999995443
No 23
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=100.00 E-value=1.3e-53 Score=498.13 Aligned_cols=333 Identities=23% Similarity=0.358 Sum_probs=285.7
Q ss_pred ceEEEecCcceEEEeccCCCCccEEEecceeccCCCCc-----cceeec-----------------CCHHhhHHHHHHHH
Q psy9135 737 TGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL-----RNLYEY-----------------KDADDLYGLLIEFI 794 (1107)
Q Consensus 737 ~~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~~~-----~~~~~~-----------------~~~~~~~d~le~i~ 794 (1107)
++||||+||++||+||+|++.|+.++||+++++++... +.++.| +|.+.||+.++.+|
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~P~~~G~i~d~~~~e~i~ 81 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVVFPSIVGRPKDGKGMVGDAKDTFVGDEAQEKRGGLELKYPIEHGIVENWDDMEKIW 81 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEEccceeeEecccccccCCCcceEecchhhhcCCCceecCCCcCCEEeCHHHHHHHH
Confidence 58999999999999999999999999999998755321 122322 25668899999999
Q ss_pred HHHHHhccccCCCCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCCceEEEEEcCCCceEEEEEE
Q psy9135 795 RKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVY 874 (1107)
Q Consensus 795 ~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~~tglVVDiG~~~T~v~PV~ 874 (1107)
+|+|.+.|+++++++|+++++|.++++..|++++|++||.|++|++++++++++++|++|.+||+|||+|++.|+|+||+
T Consensus 82 ~~~~~~~l~~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~pv~ 161 (373)
T smart00268 82 DYTFFNELRVEPEEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYASGRTTGLVIDSGDGVTHVVPVV 161 (373)
T ss_pred HHHHhhhcCCCCccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhCCCCEEEEEecCCCcceEEEEE
Confidence 99998899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhceeeccchHHHHHHhcCC
Q psy9135 875 EGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIAAKNP 954 (1107)
Q Consensus 875 dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c~v~~~~~~~~~~~~~~ 954 (1107)
||+++.++++++++| |++++++|+++|++++. .+.. ....++++++||++|||+.+...........
T Consensus 162 ~G~~~~~~~~~~~~G-G~~l~~~l~~~l~~~~~--------~~~~----~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~ 228 (373)
T smart00268 162 DGYVLPHAIKRIDIA-GRDLTDYLKELLSERGY--------QFNS----SAEFEIVREIKEKLCYVAEDFEKEMKKARES 228 (373)
T ss_pred CCEEchhhheeccCc-HHHHHHHHHHHHHhcCC--------CCCc----HHHHHHHHHhhhheeeecCChHHHHHHhhhc
Confidence 999999999999999 99999999999988541 1111 1234689999999999997764332211110
Q ss_pred CCCCCCceEEeCCCCCEEEecccccccccccccCCC---CCCCcHHHHHHHHHHcCCcccccccC-------------CC
Q psy9135 955 DHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELD---LDMLNIATIILDSLLSVASSDGREET-------------QY 1018 (1107)
Q Consensus 955 ~~~~~~~~~y~Lpdg~~i~l~~~erf~~~E~LF~P~---~~~~gL~~~I~~sI~~~~~~d~r~~L-------------~G 1018 (1107)
.........|+||||+.+.+ +.+||.+||+||+|+ .+..+|+++|.++|.+|| .|+|+.| ||
T Consensus 229 ~~~~~~~~~~~lpdg~~~~~-~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~-~d~r~~l~~nIvltGG~s~i~G 306 (373)
T smart00268 229 SESSKLEKTYELPDGNTIKV-GNERFRIPEILFKPELIGLEQKGIHELVYESIQKCD-IDVRKDLYENIVLSGGSTLIPG 306 (373)
T ss_pred ccccccceeEECCCCCEEEE-ChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCC-HhHHHHHHhCeEeecccccCcC
Confidence 01114457899999999999 899999999999995 467899999999999999 9999998 77
Q ss_pred CCCCCCccchHHHHHhhhhCCCcccccccceeeEEEEeCCCCcceehhhhHHHhhcCCCccceeeeHHHHhhcCC-ccce
Q psy9135 1019 FPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLNNNV-IPDW 1097 (1107)
Q Consensus 1019 f~~~~~~~eRL~~EL~~l~p~~~~~~~~~~~~~~~v~~~~~~~~~~aW~GgSIlasl~~f~~~~ITk~eYeE~G~-i~d~ 1097 (1107)
| .+||++||+.+.| .. .++++. .++++.+++|+||||+|++++|+++||||+||+|+|+ |+++
T Consensus 307 l------~~RL~~el~~~~p-~~--------~~v~v~-~~~~~~~~~W~G~silas~~~f~~~~vtk~eY~E~G~~i~~~ 370 (373)
T smart00268 307 F------GERLEKELKQLAP-KK--------LKVKVI-APPERKYSVWLGGSILASLSTFEDMWITKKEYEEHGSQIVER 370 (373)
T ss_pred H------HHHHHHHHHHhCC-CC--------ceeEEe-cCCCCccceEeCcccccCccchhhhEEEHHHHhhhCcceEEe
Confidence 7 9999999999998 21 235664 4558899999999999999999999999999999996 9998
Q ss_pred ecc
Q psy9135 1098 CNL 1100 (1107)
Q Consensus 1098 ~~~ 1100 (1107)
+|+
T Consensus 371 k~~ 373 (373)
T smart00268 371 KCF 373 (373)
T ss_pred ecC
Confidence 874
No 24
>KOG0681|consensus
Probab=100.00 E-value=4.2e-53 Score=470.66 Aligned_cols=480 Identities=20% Similarity=0.248 Sum_probs=315.8
Q ss_pred CCeEEEecCCceeEEeeecCcccccccccceeccCCccccc--eecc------------------CchhhHHHHHHHHHH
Q psy9135 42 PKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRN--LYEY------------------KDADDLYGLLIEFIR 101 (1107)
Q Consensus 42 ~~~iViD~GS~~~K~G~age~~P~~i~ps~v~~~~~~~~~~--~~~~------------------~~~~~~~~~le~i~~ 101 (1107)
..||||||||+.|||||+|+..|+++|+|++.|+++.+... -++| .+.+.+|+.+|.+++
T Consensus 23 ~~piVIDNGS~~~RaGw~ge~eP~lvFrNvl~r~Rdrk~~~s~t~vgnd~~~~~~~Rs~~rSPFd~nVvtNwel~E~ilD 102 (645)
T KOG0681|consen 23 TIPIVIDNGSYECRAGWAGEKEPRLVFRNVLTRPRDRKLGASVTLVGNDILNFQGVRSSPRSPFDRNVVTNWELMEQILD 102 (645)
T ss_pred CCcEEEeCCceeEeecccCCCCccchhhhhhccccccccccccccccchhhhhhhhhccCCCCCcCCccccHHHHHHHHH
Confidence 55999999999999999999999999999999998543310 0111 266789999999999
Q ss_pred HHHhhccccCC--CCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhcc-CCC---ceEEEEEeCCCceE
Q psy9135 102 KIFFKYFVTSP--KDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCT-LGV---NTGLVLDIGYSEAT 175 (1107)
Q Consensus 102 ~~~~~~L~~~~--~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~-~g~---~tglVVDiG~~~T~ 175 (1107)
|+| .+|++++ .+|||++||+.+||...|+.|+|+|||+||||+|.++.+++.|+|. ++. .+|+||++||+.|+
T Consensus 103 Y~F-~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~~hN~~~~~~~~~liis~g~~~T~ 181 (645)
T KOG0681|consen 103 YIF-GKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSFYHNYGKSSNKSGLIISMGHSATH 181 (645)
T ss_pred HHH-HhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHHhhccCcccCcceEEEecCCCcce
Confidence 999 7799887 6899999999999999999999999999999999999999999994 333 36999999999999
Q ss_pred EEEeecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccCCCHHHHHHHHHhceee
Q psy9135 176 LLPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFV 255 (1107)
Q Consensus 176 V~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~iKe~~c~v 255 (1107)
|+||.||..+...++|+|+||.+...||.+| |..+.+.++ ..++....+.++..|||+
T Consensus 182 vipvldG~~il~~~kRiN~GG~qa~dYL~~L--------------mq~Kyp~~~--------~~~t~sk~E~l~~eHcyi 239 (645)
T KOG0681|consen 182 VIPVLDGRLILKDVKRINWGGYQAGDYLSRL--------------MQLKYPFHL--------NAFTGSKAERLLHEHCYI 239 (645)
T ss_pred eEEEecCchhhhcceeeccCcchHHHHHHHH--------------HhccCccch--------hhcCHHHHHHHhhhhcee
Confidence 9999999999999999999999999999999 444333332 346788999999999999
Q ss_pred ccchhHHHHHhcCCCCCCCCCeeeecCCCcccc-----cCccchhhhhhhhcchhhhhhhHHHHHHhh-----h----hh
Q psy9135 256 TTMERSAEIAAKNPDHKYPSGFMYPLKNGKKIP-----VSGHIRETAFEVLFELDLDMLNIATIILDS-----L----LS 321 (1107)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~y~Lpd~~~i~-----i~~~~r~~~~e~lF~~~~~~~~~~~~~~~~-----~----~~ 321 (1107)
+.+..+.-.....++........+++|....+. +....|.+ ..+-.+. .+...+++.+. . .+
T Consensus 240 s~DY~eei~~~l~~d~~d~~~~~~qlP~~evl~~~e~~l~Ae~kqe--kRlq~~a--~lkrv~k~~~re~~redeqql~~ 315 (645)
T KOG0681|consen 240 SPDYREEIIKILEMDYYDENRNYFQLPYTEVLAEVELALTAEKKQE--KRLQEQA--ALKRVEKINARENRREDEQQLES 315 (645)
T ss_pred CcchHHHHHHHhhhhhhhccceEEecccccccchhhhhccHHHHHH--HHHHHHH--HHhhHHHHHHHHhhhhhHHHHHH
Confidence 976554332222233333556677777665421 11111110 0000000 00011111110 0 00
Q ss_pred cccCCCccc-----cccccccccccCCCcchhhhcc-------CCcc---cccccchhccccccCCccchhhhhhccccc
Q psy9135 322 VASSDGREE-----TQYFPFRCWVNTRTPEKLCCLV-------GWSN---ICCYKLFIKNFKFHEFPAKENYVAWLGGAI 386 (1107)
Q Consensus 322 ~~~~~~~~~-----~~~~~~~~~~~~~~~e~~~~~~-------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (1107)
.....++.+ ++.+++.-.-....++.+...+ +.+. .-..|..++..++.+.++ +|...|+...-
T Consensus 316 ~~kaq~e~e~~~D~~q~~~ll~v~~eL~~d~lk~k~~qr~lkas~dar~rar~eke~Er~~k~~~~r~-~~~~swl~e~r 394 (645)
T KOG0681|consen 316 YNKAQGEQESNLDLEQKFPLLNVPAELDEDQLKEKKKQRILKASTDARLRARVEKELERLNKLEEERE-ENLISWLEELR 394 (645)
T ss_pred HHHhhhchhcCccHhhhchhhcchhhhCHHHHHHHHHHHHHHhhhhhhccccccchHHHhhccccccc-ccHHHHHHHHH
Confidence 000000000 0000000000000000000000 0000 000001111122222222 44555554221
Q ss_pred c----------ccc------------------------ccchhh-ccccccccCCC--CCCCccc--------c------
Q psy9135 387 F----------AAT------------------------ESYNKR-AIQKDVYLNNN--VIPDWCN--------L------ 415 (1107)
Q Consensus 387 ~----------a~~------------------------~~~~~~-~~~~~~~~~~~--~~p~~~~--------~------ 415 (1107)
. ++. +..+.. ....+...+++ +..||+- .
T Consensus 395 ~k~~~ller~~~kk~lk~e~~~r~s~~Sq~rmr~~~~La~~~~~rrk~~~~t~D~fg~~Dedw~vYe~lee~~~~~~~dl 474 (645)
T KOG0681|consen 395 EKLEKLLERISQKKRLKQELKDRKSHASQLRMRALARLAYEQVVRRKRKEATPDNFGARDEDWDVYEDLEEENKSILEDL 474 (645)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhhHHHHhhhHHHHHHHhcccCCccccccchhhHHHHHHhhhhhhhHHHHH
Confidence 1 000 000000 01111112221 2233320 0
Q ss_pred ---c----ccCC----------CCCCC----CCCCcccccCCcccccccccccCC---CCCCCCHHHHHHHHHhccCccc
Q psy9135 416 ---S----VLGT----------DLKKS----VNPYLHFPVSGHIRETAFEVLFEL---DLDMLNIATIILDSLLKTGRDM 471 (1107)
Q Consensus 416 ---~----~~~~----------~~~~~----~~~~~~~~~~~~er~~~pE~lF~p---~~~~~gL~e~I~~sI~~~~~d~ 471 (1107)
. ++.. ++..+ .+.+...+++|.||+++||++|+| |.+++||.|++..++.+.|.|.
T Consensus 475 ~~l~~~L~e~Dp~F~~~~~~~~d~~~~~~p~~~~e~~qlh~nVEriRvPEIiFqPsiiG~dQaGl~Ei~~~il~r~p~~e 554 (645)
T KOG0681|consen 475 KSLNHELLEFDPHFTQYVEGTTDPRNGVLPGFTAEDYQLHLNVERIRVPEIIFQPSIIGIDQAGLAEIMDTILRRYPHDE 554 (645)
T ss_pred HHHHHHHHhhCcccccccccccCcccCcchhHHHhhhhhhhcceeeccceeeeccccccchhhhHHHHHHHHHHhCchhh
Confidence 0 0111 11111 122334455799999999999999 6899999999999999999999
Q ss_pred hhhhhccEEEEcCCCCccChHHHHHHHHHhhcCCCCccccccceeEEEEcCCCCCccccchhHHhhcCCcccccccccHH
Q psy9135 472 KKPLAENILLTGGTAMTPGLKYRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKD 551 (1107)
Q Consensus 472 r~~L~~nIvLtGG~S~ipGf~eRL~~EL~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~aW~Ggsilasl~~f~~~~ITk~ 551 (1107)
+..|.+||+||||+|++||+.+||.+||..+.|. ++.|.|..+. ||..+||+||+.+|...+|...|+||+
T Consensus 555 q~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~--------gS~i~V~ras-dP~LDAW~GA~~~a~n~~f~~~~~Tr~ 625 (645)
T KOG0681|consen 555 QEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPV--------GSSINVVRAS-DPVLDAWRGASAWAANPTFTLTQITRK 625 (645)
T ss_pred hHhhhhheEeecccccCcCHHHHHHHHhheeccc--------CCceEEEecC-CcchhhhhhhHHhhcCcccchhhhhHH
Confidence 9999999999999999999999999999999997 4689999877 999999999999999999999999999
Q ss_pred HHHhcCC
Q psy9135 552 AYLNNNM 558 (1107)
Q Consensus 552 eYeE~G~ 558 (1107)
||+|+|+
T Consensus 626 dy~E~G~ 632 (645)
T KOG0681|consen 626 DYEEKGE 632 (645)
T ss_pred hhhhhhH
Confidence 9999997
No 25
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=100.00 E-value=3.1e-51 Score=477.56 Aligned_cols=336 Identities=24% Similarity=0.336 Sum_probs=281.7
Q ss_pred eEEEecCcceEEEeccCCCCccEEEecceeccCCCC------ccceeec------------------CCHHhhHHHHHHH
Q psy9135 738 GVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNK------LRNLYEY------------------KDADDLYGLLIEF 793 (1107)
Q Consensus 738 ~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~~------~~~~~~~------------------~~~~~~~d~le~i 793 (1107)
+||||+||+++|+||+|++.|+.++||++++++... .+..+.| +|.+.+|+.++.+
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~P~~~G~i~d~~~~e~~ 80 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVVFPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGLGLELIYPIEHGIVVDWDDMEKI 80 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceEeeccceeecCcccccccCCCceEEchhhhhCCCCceEEcccccCCEEeCHHHHHHH
Confidence 589999999999999999999999999999875431 0112222 3567789999999
Q ss_pred HHHHHHhccccCCCCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCCceEEEEEcCCCceEEEEE
Q psy9135 794 IRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPV 873 (1107)
Q Consensus 794 ~~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~~tglVVDiG~~~T~v~PV 873 (1107)
|+|+|.+.+..+++++|+++++|+++++..|++++++|||++++|++++++++++|+|++|++||+|||+|++.|+|+||
T Consensus 81 ~~~~~~~~l~~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~i~pv 160 (371)
T cd00012 81 WDHLFFNELKVNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGRTTGLVVDSGDGVTHVVPV 160 (371)
T ss_pred HHHHHHHhcCCCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCCCeEEEEECCCCeeEEEEE
Confidence 99999888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhceeeccchHHHHHHhcC
Q psy9135 874 YEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIAAKN 953 (1107)
Q Consensus 874 ~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c~v~~~~~~~~~~~~~ 953 (1107)
+||+++.++++++++| |++++++|+++|++++. .+. .......++++||++|||+.+...+......
T Consensus 161 ~~G~~~~~~~~~~~~G-G~~l~~~l~~~l~~~~~--------~~~----~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~ 227 (371)
T cd00012 161 YDGYVLPHAIKRLDLA-GRDLTRYLKELLRERGY--------ELN----SSDEREIVRDIKEKLCYVALDIEEEQDKSAK 227 (371)
T ss_pred ECCEEchhhheecccc-HHHHHHHHHHHHHhcCC--------Ccc----chhHHHHHHHHHHhheeecCCHHHHHHhhhc
Confidence 9999999999999999 99999999999988761 111 1123568999999999999876433211111
Q ss_pred CCCCCCCceEEeCCCCCEEEecccccccccccccCCC---CCCCcHHHHHHHHHHcCCcccccccC-------CCCCCCC
Q psy9135 954 PDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELD---LDMLNIATIILDSLLSVASSDGREET-------QYFPFRC 1023 (1107)
Q Consensus 954 ~~~~~~~~~~y~Lpdg~~i~l~~~erf~~~E~LF~P~---~~~~gL~~~I~~sI~~~~~~d~r~~L-------~Gf~~~~ 1023 (1107)
. .......|.||||+.+.+ +.|||.+||+||+|. ....+|+++|.++|++|| .|.|+.+ .|-+...
T Consensus 228 ~--~~~~~~~~~lpd~~~i~~-~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~-~~~~~~l~~~Ivl~GG~s~~~ 303 (371)
T cd00012 228 E--TSLLEKTYELPDGRTIKV-GNERFRAPEILFNPSLIGSEQVGISEAIYSSINKCD-IDLRKDLYSNIVLSGGSTLFP 303 (371)
T ss_pred c--CCccceeEECCCCeEEEE-ChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhCC-HhHHHHHHhCEEEeCCccCCc
Confidence 1 114567899999999999 899999999999996 367899999999999999 9999988 2222222
Q ss_pred CccchHHHHHhhhhCCCcccccccceeeEEEEeCCCCcceehhhhHHHhhcCCCccceeeeHHHHhhcCC-cccee
Q psy9135 1024 WVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLNNNV-IPDWC 1098 (1107)
Q Consensus 1024 ~~~eRL~~EL~~l~p~~~~~~~~~~~~~~~v~~~~~~~~~~aW~GgSIlasl~~f~~~~ITk~eYeE~G~-i~d~~ 1098 (1107)
++.+||++||..+.| .. +...+++. ...+|.+++|+|||++|++++|+++||||+||+|+|+ +.+++
T Consensus 304 gl~~rl~~el~~~~~-~~------~~~~~~~~-~~~~~~~~aw~G~si~as~~~~~~~~itk~eY~E~G~~~~~~k 371 (371)
T cd00012 304 GFGERLQKELLKLAP-PS------KDTKVKVI-APPERKYSVWLGGSILASLSTFQQLWITKEEYEEHGPSIVHRK 371 (371)
T ss_pred CHHHHHHHHHHHhCC-cc------cceEEEEc-cCCCccccEEeCchhhcCchhhhheEeeHHHHhhhCchhEecC
Confidence 229999999999998 21 11235554 4568999999999999999999999999999999996 66553
No 26
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=5e-50 Score=465.09 Aligned_cols=334 Identities=24% Similarity=0.360 Sum_probs=278.7
Q ss_pred ceEEEecCcceEEEeccCCCCccEEEecceeccC-------CCCccceee-------------------cCCHHhhHHHH
Q psy9135 737 TGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPH-------TNKLRNLYE-------------------YKDADDLYGLL 790 (1107)
Q Consensus 737 ~~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~-------~~~~~~~~~-------------------~~~~~~~~d~l 790 (1107)
++||||+||+.+|+||||++.|++++|+++++.+ ....++.++ -++.+.+|+++
T Consensus 7 ~~iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~~~~~~~~~~p~~~g~i~~W~~~ 86 (444)
T COG5277 7 PTIVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDNSLLELRYPIENGIILNWDAM 86 (444)
T ss_pred CeEEEeCCCceEEeeecCCCCceeecccccccccccccccccccccccccCchhhhccCCccceeecccccCccCCcHHH
Confidence 4499999999999999999999999999999985 111111111 13677889999
Q ss_pred HHHHHHHHHh--ccccCCCCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCCc--eEEEEEcCCC
Q psy9135 791 IEFIRKIFFK--YFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVN--TGLVLDIGYS 866 (1107)
Q Consensus 791 e~i~~~~~~~--~L~~~~~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~~--tglVVDiG~~ 866 (1107)
+++|+|+|++ .+...+.++|++++||+++++..|++++|++||+|+||++++..+++|++|+.|+. +|+|||+|++
T Consensus 87 e~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~~~g~ViD~G~~ 166 (444)
T COG5277 87 EQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSSDETGLVIDSGDS 166 (444)
T ss_pred HHHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCCCceEEEEcCCC
Confidence 9999999998 68899999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred ceEEEEEEcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhce-------e
Q psy9135 867 EATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSC-------F 939 (1107)
Q Consensus 867 ~T~v~PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c-------~ 939 (1107)
.|+|+||+||++++++++++++| |++++.+|.++|..... +.+.+.+..+. ..-+.++++.+|+++| |
T Consensus 167 ~t~v~PV~DG~~l~~a~~ri~~g-G~~it~~l~~lL~~~~~---~~~~~~l~~e~-~~~~~ei~~~ik~e~~~~~~~~~y 241 (444)
T COG5277 167 VTHVIPVVDGIVLPKAVKRIDIG-GRDITDYLKKLLREKYP---PSRGYNLKSEL-VEYSSEIVNEIKEEVCETDDESAY 241 (444)
T ss_pred ceeeEeeeccccccccceeeecC-cHHHHHHHHHHHhhccc---ccCCccccccc-ccccHHHHHHHHHhhccccccccc
Confidence 99999999999999999999999 99999999999998541 11223333221 0123569999999999 8
Q ss_pred eccchHHHHHHhcC-----C--------CCCCCCceEEeCCCCCEEEecccc-cccccccccCCC--C---CCCc-----
Q psy9135 940 VTTMERSAEIAAKN-----P--------DHKYPSGFMYPLKNGKKIPVSGHI-RETAFEVLFELD--L---DMLN----- 995 (1107)
Q Consensus 940 v~~~~~~~~~~~~~-----~--------~~~~~~~~~y~Lpdg~~i~l~~~e-rf~~~E~LF~P~--~---~~~g----- 995 (1107)
+..+.++......+ . .........+.+|||+.+.+ +.| ||++||.||+|. . +..+
T Consensus 242 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~-~~e~rf~~pE~lF~pe~~~~~l~~~~~~~~~ 320 (444)
T COG5277 242 VSLDAEEEFEEEEEKPAEKSTESTFQLSKETSIAKESKELPDGEEIEF-GNEERFKAPEILFKPELPISGLEEAGKIDES 320 (444)
T ss_pred hhhcchHHHHHHhhhhhhhcccccccccchhccccccccCCCCceEee-chhhhhhcchhhcCCccccccccccccchhh
Confidence 87543322111100 0 00124456789999999999 788 999999999997 2 3334
Q ss_pred ----------------------HHHHHHHHHHcCCcccccccC-------------CCCCCCCCccchHHHHHhhhhCCC
Q psy9135 996 ----------------------IATIILDSLLSVASSDGREET-------------QYFPFRCWVNTRTPEKLCCLVGWS 1040 (1107)
Q Consensus 996 ----------------------L~~~I~~sI~~~~~~d~r~~L-------------~Gf~~~~~~~eRL~~EL~~l~p~~ 1040 (1107)
|++++.++|..|| .|.|+.| ||| .+||++||+.+.|.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~gl~e~v~~si~~~~-~~~r~~l~~nivitGGts~~pg~------~~Rl~~el~~~~p~- 392 (444)
T COG5277 321 KQELVAENYEISPTNLGNDIAGLPELVYQSIQICD-EDVRKSLYSNIVLTGGTSKIPGF------AERLQKELTSLAPS- 392 (444)
T ss_pred hhhhhhhccccccccccccccchHHHHHHHHHhcc-HHHHHHHhhCEEEecCccCCCCH------HHHHHHHHHhhcCC-
Confidence 9999999999999 9999999 888 99999999999992
Q ss_pred cccccccceeeEEEEeCCCCcceehhhhHHHhhcCCCccceeeeHHHHhhcCC
Q psy9135 1041 NICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLNNNV 1093 (1107)
Q Consensus 1041 ~~~~~~~~~~~~~v~~~~~~~~~~aW~GgSIlasl~~f~~~~ITk~eYeE~G~ 1093 (1107)
...+.|. ++.+|.+.+|+||||||++++|+++||||+||+|+|+
T Consensus 393 --------~~~v~v~-~~~~~~~~~W~GaSila~~~~~~~~~itk~eY~e~G~ 436 (444)
T COG5277 393 --------IWKVSVI-PPPDPSLDAWLGASILASLETFQQLWITKEEYEEHGP 436 (444)
T ss_pred --------CCceeee-cCCchhhccccchhhhccccchhheEeeHHHhhhhhh
Confidence 2456775 4559999999999999999999999999999999997
No 27
>PF06105 Aph-1: Aph-1 protein; InterPro: IPR009294 This family consists of several eukaryotic Aph-1 proteins. Gamma-secretase catalyses the intramembrane proteolysis of Notch, beta-amyloid precursor protein, and other substrates as part of a new signalling paradigm and as a key step in the pathogenesis of Alzheimer's disease. It is thought that the presenilin heterodimer comprises the catalytic site and that a highly glycosylated form of nicastrin associates with it. Aph-1 and Pen-2, two membrane proteins genetically linked to gamma-secretase, associate directly with presenilin and nicastrin in the active protease complex. Co-expression of all four proteins leads to marked increases in presenilin heterodimers, full glycosylation of nicastrin, and enhanced gamma-secretase activity [].; GO: 0016485 protein processing, 0043085 positive regulation of catalytic activity, 0016021 integral to membrane
Probab=100.00 E-value=3.2e-50 Score=423.57 Aligned_cols=190 Identities=44% Similarity=0.802 Sum_probs=173.1
Q ss_pred CccccccccccccceeeeeeeeecCCCeEEehhhHhHHHHHHHHHHhhhheeeeeccc-chhHHHHHHHHHHHHHHHHHH
Q psy9135 560 YMEFLGCTMTAFGPVIAMFLTTIMQDPVKVIILVASAFAWLLSLLLSSIVWFVIRYQC-NIIFGVVISVLCQEAFRYILY 638 (1107)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~e~~r~~~~ 638 (1107)
..-++||+++||||.+++|+.+|++||+|||++++++|+||+||+++|++|+++.|-. .+++++++||++||++|+.||
T Consensus 2 ~~~f~Gc~liafgP~lalf~~tIa~~p~liIi~i~~aFfWLvSLLlss~iW~i~~pl~~~l~f~v~~sV~~QE~fR~~~~ 81 (238)
T PF06105_consen 2 LAVFFGCALIAFGPALALFVFTIARDPQLIIILIAGAFFWLVSLLLSSLIWFIVVPLRDNLAFGVLFSVLIQEAFRYLYY 81 (238)
T ss_pred hHHHHHHHHHHHCHHHHhhheeeeCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHH
Confidence 3458999999999999999999999999999999999999999999999999999944 899999999999999999999
Q ss_pred HHHHHhhcchhhhcccc-ccccchhhhhhhccchhHHHHHHHHhhhcccccCCCccccccCcce-eeehhhHHHHHHHHH
Q psy9135 639 LILQKSRGGLQYVSDRN-TMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQY-FGFTTSIFTCCFSLL 716 (1107)
Q Consensus 639 ~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~g~g~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 716 (1107)
|++||+|++|++++++. ...++|.+|||+|+|||+||++|+++|+|+|++||||+|.++|+++ ||++||++|+||+++
T Consensus 82 ~ll~kae~gL~~i~~~~~~~~~~~~lA~v~GlGfGimsg~f~~~n~Lads~GPGt~g~~~c~~~~ffl~SA~~tl~~~lL 161 (238)
T PF06105_consen 82 KLLKKAEEGLQSIAEDGTSPISRHQLAYVSGLGFGIMSGVFSFVNILADSLGPGTVGIHGCPSMPFFLTSAFMTLAFILL 161 (238)
T ss_pred HHHHHHHHHHHHhccccCCCCccceeeehhccchHHHHHHHHHHhhhhhccCCceeccCCCCCccchHHHHHHHHHHHHH
Confidence 99999999999999984 4479999999999999999999999999999999999999999888 999999999999999
Q ss_pred HHhheeeEEeccccccccccceEEEecCcceEEEec
Q psy9135 717 HVFWSIVFFRGVEIKNRTLKTGVVLDIGSKYTKYGI 752 (1107)
Q Consensus 717 ~~~~~~~~f~g~~~~~~~~~~~vViD~Gs~~iK~G~ 752 (1107)
||||||||||||++++. ..++.=..+|..-.+.
T Consensus 162 H~fW~VI~F~g~~~~~~---~~i~~V~~~Hl~vs~l 194 (238)
T PF06105_consen 162 HTFWMVIFFDGCEKKNW---WLIAFVVISHLLVSCL 194 (238)
T ss_pred HHHHHHhhhhhhccCCc---eEEEehHHHHHHHHHH
Confidence 99999999999998664 2333335555443333
No 28
>KOG0680|consensus
Probab=100.00 E-value=4.1e-48 Score=407.10 Aligned_cols=326 Identities=23% Similarity=0.321 Sum_probs=272.6
Q ss_pred cceEEEecCcceEEEeccCCCCccEEEecceeccCCCCccceeec-------------------CCHHhhHHHHHHHHHH
Q psy9135 736 KTGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYEY-------------------KDADDLYGLLIEFIRK 796 (1107)
Q Consensus 736 ~~~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~~~~~~~~~-------------------~~~~~~~d~le~i~~~ 796 (1107)
.++||+|+|++++|+|+++++.|+ ++|+++.+.+.++. +.|.+ +|...+|+.-..+|++
T Consensus 3 ~~tiVlDNGay~~KiG~s~~~~p~-~vpNcl~kaK~~~r-r~f~~nei~ec~D~ssL~y~rp~erGyLvnW~tq~~vWDy 80 (400)
T KOG0680|consen 3 TTTIVLDNGAYNIKIGPSTNKKPF-VVPNCLAKAKFGRR-RSFLANEIDECKDISSLFYRRPHERGYLVNWDTQSQVWDY 80 (400)
T ss_pred CceEEEcCCceeEEeccCCCCCce-eccchhhhcccccc-hhhhhhhhhhccCccceEEeehhhcceeEeehhHHHHHHH
Confidence 468999999999999999999999 67999988876642 12221 2566789999999999
Q ss_pred HHHhc-cccCCCCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhccc----C-------CceEEEEEcC
Q psy9135 797 IFFKY-FVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTL----G-------VNTGLVLDIG 864 (1107)
Q Consensus 797 ~~~~~-L~~~~~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~----g-------~~tglVVDiG 864 (1107)
+|.+. ++++.+++.++++||.++-+...+.+.|+|||.|+|.+++-.+.+.++.+-. + ..+++|||+|
T Consensus 81 ~f~~~~~~~~~~~~~ivlTep~~~~psi~~~t~eilFEey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsG 160 (400)
T KOG0680|consen 81 CFGNPGFDVEGKDHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSG 160 (400)
T ss_pred HhcCCCcCcccCcceEEEecccccccchhhhHHHHHHHHhccceEeecCHHHhcchhhhccCCccccccccceEEEEeCC
Confidence 99653 4577799999999999999999999999999999999999999999988761 1 2279999999
Q ss_pred CCceEEEEEEcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhceeeccch
Q psy9135 865 YSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTME 944 (1107)
Q Consensus 865 ~~~T~v~PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c~v~~~~ 944 (1107)
++.|+|+||++|.+..++++|+++| |+.||++|++.+..++. ... + ..+++++|||.+|||+.+.
T Consensus 161 ysfThIip~v~g~~~~qaV~RiDvG-GK~LTn~LKE~iSyR~l--------Nvm--d----ET~vVNeiKEdvcfVSqnF 225 (400)
T KOG0680|consen 161 YSFTHIIPVVKGIPYYQAVKRIDVG-GKALTNLLKETISYRHL--------NVM--D----ETYVVNEIKEDVCFVSQNF 225 (400)
T ss_pred CceEEEehhhcCcchhhceEEeecc-hHHHHHHHHHHhhhhhh--------ccc--c----hhhhhhhhhhheEEechhh
Confidence 9999999999999999999999999 99999999999998872 221 1 1259999999999999865
Q ss_pred HHHHHHhcCCCCCCCCceEEeCCC-------------------CCEEEecccccccccccccCCC---CCCCcHHHHHHH
Q psy9135 945 RSAEIAAKNPDHKYPSGFMYPLKN-------------------GKKIPVSGHIRETAFEVLFELD---LDMLNIATIILD 1002 (1107)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~y~Lpd-------------------g~~i~l~~~erf~~~E~LF~P~---~~~~gL~~~I~~ 1002 (1107)
.+.-...............|.||| .+.|.+ +.|||..||+||+|+ ++++||+++|.+
T Consensus 226 ~~~m~~~~~k~~~~~~~i~YvLPDF~T~k~Gyvr~~~vk~~~d~qii~L-~nErF~IPEilF~Psdi~I~q~GIpEAV~e 304 (400)
T KOG0680|consen 226 KEDMDIAKTKFQENKVMIDYVLPDFSTSKRGYVRNEDVKLPEDEQIITL-TNERFTIPEILFSPSDIGIQQPGIPEAVLE 304 (400)
T ss_pred HHHHHHHhhccccceeEEEEecCCcccccceeEecCCCCCCCCcceeee-cccccccchhhcChhhcCcccCCchHHHHH
Confidence 432221111111113456777774 455788 899999999999996 578999999999
Q ss_pred HHHcCCcccccccC-------------CCCCCCCCccchHHHHHhhhhCCCcccccccceeeEEEEeCCCCcceehhhhH
Q psy9135 1003 SLLSVASSDGREET-------------QYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGG 1069 (1107)
Q Consensus 1003 sI~~~~~~d~r~~L-------------~Gf~~~~~~~eRL~~EL~~l~p~~~~~~~~~~~~~~~v~~~~~~~~~~aW~Gg 1069 (1107)
||..|| ..+|+.| ||| .+||..||++++|. + ..++|. .|.+|..-+|-||
T Consensus 305 sl~~~P-e~~~p~l~~NIv~iGGn~~fPgF------~~RL~~Elr~l~P~-d--------~~v~V~-~p~dp~~~~W~~g 367 (400)
T KOG0680|consen 305 SLSMLP-EEVRPLLLENIVCIGGNSNFPGF------RQRLARELRSLLPA-D--------WEVSVS-VPEDPITFAWEGG 367 (400)
T ss_pred HHHhCH-HHHHHHHHhcEEEecCccCCcch------HHHHHHHHHhhCCc-c--------ceEEEe-cCCCcceeeehhc
Confidence 999999 9999988 999 99999999999992 2 356664 5579999999999
Q ss_pred HHhhcCCCccceeeeHHHHhhcCCcccee
Q psy9135 1070 AIFAATESYNKRAIQKDVYLNNNVIPDWC 1098 (1107)
Q Consensus 1070 SIlasl~~f~~~~ITk~eYeE~G~i~d~~ 1098 (1107)
+-++.+++|..+||||+||+|+|+ +||
T Consensus 368 ~~~~~~~~~~~~~itR~dy~E~G~--~~~ 394 (400)
T KOG0680|consen 368 SEFAKTDSFEKAVITREDYEEHGP--SWC 394 (400)
T ss_pred cccccCcchhcceecHhhHhhcCc--hhh
Confidence 999999999999999999999998 665
No 29
>KOG3972|consensus
Probab=100.00 E-value=6.9e-46 Score=364.46 Aligned_cols=172 Identities=48% Similarity=0.879 Sum_probs=164.3
Q ss_pred CccccccccccccceeeeeeeeecCCCeEEehhhHhHHHHHHHHHHhhhheeee-eccc-chhHHHHHHHHHHHHHHHHH
Q psy9135 560 YMEFLGCTMTAFGPVIAMFLTTIMQDPVKVIILVASAFAWLLSLLLSSIVWFVI-RYQC-NIIFGVVISVLCQEAFRYIL 637 (1107)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~v~~~e~~r~~~ 637 (1107)
+-.++||+++||||.+++|..+||.+|.|+|++++++|+||+||+++|++|++- .+.. .++|+..+||++||.+|+.|
T Consensus 3 ~~~ffgC~fiaFgPa~ALf~~tIA~dPvRIIiliagaFFWLvSLLisSl~W~~l~i~l~~~lifg~~vsV~~qE~fR~ay 82 (252)
T KOG3972|consen 3 AAVFFGCTFIAFGPAFALFVFTIAHDPVRIIILIAGAFFWLVSLLISSLVWFGLSIVLPDDLIFGATVSVIAQELFRFAY 82 (252)
T ss_pred cceeeeeEEeeeCcchhhheeeecCCCeeehhhHHHHHHHHHHHHHHHHHHHheEccchhhhhhHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999999999995 4433 89999999999999999999
Q ss_pred HHHHHHhhcchhhhccc-cccccchhhhhhhccchhHHHHHHHHhhhcccccCCCccccccCcceeeehhhHHHHHHHHH
Q psy9135 638 YLILQKSRGGLQYVSDR-NTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLL 716 (1107)
Q Consensus 638 ~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~g~g~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1107)
|+++|||++||++++++ ...+++|.+|||+|||||+|+++|..+|+|+|+.||||+|+++++++|||++|++++.+.|+
T Consensus 83 yklLkka~~GL~si~~d~~~~~s~h~lAyVsGLgfGIiSgvFs~vN~lad~sGPGtvGl~g~s~~~fl~sa~~al~iiLl 162 (252)
T KOG3972|consen 83 YKLLKKAQEGLNSITEDGRLHNSRHMLAYVSGLGFGIISGVFSTVNALADFSGPGTVGLHGDSPYFFLTSAFSALLIILL 162 (252)
T ss_pred HHHHHHHHHHHHhcCccCCCchhHHHHHHHhccchhHHHHHHHHHHHHHhccCCCeeccCCCcchhhHHHHHHHHHHHHH
Confidence 99999999999999995 67788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhheeeEEeccccc
Q psy9135 717 HVFWSIVFFRGVEIK 731 (1107)
Q Consensus 717 ~~~~~~~~f~g~~~~ 731 (1107)
||||.|+|||+||+.
T Consensus 163 HvfW~ivffdac~k~ 177 (252)
T KOG3972|consen 163 HVFWGIVFFDACEKI 177 (252)
T ss_pred HHHHHheeehhhhhh
Confidence 999999999999964
No 30
>KOG0678|consensus
Probab=100.00 E-value=5.6e-43 Score=368.69 Aligned_cols=349 Identities=20% Similarity=0.319 Sum_probs=270.5
Q ss_pred eEEEecCCceeEEeeecCcccccccccceeccCCccc--------------cceeccC----------------chhhHH
Q psy9135 44 GVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL--------------RNLYEYK----------------DADDLY 93 (1107)
Q Consensus 44 ~iViD~GS~~~K~G~age~~P~~i~ps~v~~~~~~~~--------------~~~~~~~----------------~~~~~~ 93 (1107)
++|+|+|+...|.||+|...|++++|++++....... -+++.++ +..++|
T Consensus 6 p~V~d~Gtgytklg~agn~~p~~i~p~~ia~~~~~~~s~~~~~~~~~~~~dldf~ig~eal~~~~ysl~ypiRhg~ve~w 85 (415)
T KOG0678|consen 6 PCVIDNGTGYTKLGYAGNTEPQFIIPTAIAVKESAAVSSKATRRVKRGTEDLDFFIGDEALDATTYSLKYPIRHGQVEDW 85 (415)
T ss_pred ceeeccCcceeeeeccccCCcccccceeEEeccccccccchhhhhhccccccceecccHHHhhcccccccceeccccccH
Confidence 3899999999999999999999999999875422111 2344444 334679
Q ss_pred HHHHHHHHHHHhhccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccC--------CCceEE
Q psy9135 94 GLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTL--------GVNTGL 165 (1107)
Q Consensus 94 ~~le~i~~~~~~~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~--------g~~tgl 165 (1107)
+.|+++|...+.++|..+|++|-.|||||+++++++|+..+|++||.|+||.++++.++++|+-++ -.-||+
T Consensus 86 d~mer~~~q~ifkylr~ePedh~fLlteppln~penreytaeImfEsfnvpglyiAVqavLALaaswts~~v~er~ltG~ 165 (415)
T KOG0678|consen 86 DLMERFWEQCIFKYLRAEPEDHYFLLTEPPLNQPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERFLTGI 165 (415)
T ss_pred HHHHHHHhhhhhhhhcCCcccceEEecCCCCCCchhhHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHhhhhhheeeeE
Confidence 999999999999999999999999999999999999999999999999999999999999988653 236999
Q ss_pred EEEeCCCceEEEEeecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccCCCHHHH
Q psy9135 166 VLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSII 245 (1107)
Q Consensus 166 VVDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 245 (1107)
|||.|.+.|||+||.||+|+..+++..++.|+++|-+++++ |++.+...|. ..+.+.+
T Consensus 166 VidsGdgvThvipvaEgyVigScik~iPiagrdiT~fiQ~l--------------lRer~~~iP~--------e~sl~ta 223 (415)
T KOG0678|consen 166 VIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQL--------------LREREVGIPP--------EQSLETA 223 (415)
T ss_pred EEecCCCeeEEEEeecceEEeeeeccccccCCchhHHHHHH--------------hhCCCCCCCh--------HHhhhhh
Confidence 99999999999999999999999999999999999999999 7776644332 1357889
Q ss_pred HHHHHhceeeccchhHHHHHhcCCCCCCCCCeeeecCCCcccccCccchhhhhhhhcchhhhhhhHHHHHHhhhhhcccC
Q psy9135 246 EDIKVCSCFVTTMERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASS 325 (1107)
Q Consensus 246 e~iKe~~c~v~~~~~~~~~~~~~~~~~~~~~~~y~Lpd~~~i~i~~~~r~~~~e~lF~~~~~~~~~~~~~~~~~~~~~~~ 325 (1107)
+.+||++||+.++--.+ ..+.. |+ .++..|--.
T Consensus 224 k~iKe~ycy~cPdivke-f~k~d-------------------------~e----------------p~K~ikq~~----- 256 (415)
T KOG0678|consen 224 KAIKEKYCYTCPDIVKE-FAKYD-------------------------RE----------------PAKWIKQYT----- 256 (415)
T ss_pred HHHHhhhcccCcHHHHH-HHHhc-------------------------cC----------------HHHHHHHHh-----
Confidence 99999999998633211 10000 00 000000000
Q ss_pred CCccccccccccccccCCCcchhhhccCCcccccccchhccccccCCccchhhhhhcccccccccccchhhccccccccC
Q psy9135 326 DGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLN 405 (1107)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 405 (1107)
.++.
T Consensus 257 -------------~~~~--------------------------------------------------------------- 260 (415)
T KOG0678|consen 257 -------------GINV--------------------------------------------------------------- 260 (415)
T ss_pred -------------ccch---------------------------------------------------------------
Confidence 0000
Q ss_pred CCCCCCcccccccCCCCCCCCCCCcccccCCcccccccccccCCCC----CCCCHHHHHHHHHhccCccchhhhhccEEE
Q psy9135 406 NNVIPDWCNLSVLGTDLKKSVNPYLHFPVSGHIRETAFEVLFELDL----DMLNIATIILDSLLKTGRDMKKPLAENILL 481 (1107)
Q Consensus 406 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~pE~lF~p~~----~~~gL~e~I~~sI~~~~~d~r~~L~~nIvL 481 (1107)
.+.....+..|.|||..||++|+|.. -...|++++...|+.||+|.|+.||+||++
T Consensus 261 --------------------i~~~~~~vDvgyerFlgpEiff~Pe~a~~d~~~~~~~~vd~~Iq~~pIdvrr~ly~nivl 320 (415)
T KOG0678|consen 261 --------------------ITGKKFVVDVGYERFLGPEIFFHPEFANPDFLTPLSEVVDWVIQHCPIDVRRPLYKNIVL 320 (415)
T ss_pred --------------------hcCCceeecccHHhhcChhhhcCccccCCccCcchHHHhhhhhhhCCcccchhhhhHHhh
Confidence 00000112238899999999999952 246799999999999999999999999999
Q ss_pred EcCCCCccChHHHHHHHHHhhcCCC----Cccccccc--eeEEEEcCCCCCccccchhHHhhcCCcccccccccHHHHHh
Q psy9135 482 TGGTAMTPGLKYRLLQELRTLIESP----PYKDKLFI--KNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAYLN 555 (1107)
Q Consensus 482 tGG~S~ipGf~eRL~~EL~~~~~~~----~~~~~~~~--~~v~v~~~~~~~~~~aW~Ggsilasl~~f~~~~ITk~eYeE 555 (1107)
.||++++++|..|+++++.++.... .--+.+.. ..++++... -.+++.|.|||+||+.+.|-+.+=||+||+|
T Consensus 321 sggst~fk~fgr~lqrD~kr~vd~rl~~s~~lsg~k~~~vdvqvish~-~qr~avwfggs~lastpef~~~~~tk~~yee 399 (415)
T KOG0678|consen 321 SGGSTMFKDFGRRLQRDLKRLVDTRLAESEGLSGIKSKPVDVQVLSHL-LQRTAVWFGGSKLASTPEFVPACHTKEDYEE 399 (415)
T ss_pred ccchHHHHHhhhhccHHHHHHHHHHHHHhcccccCCCCCceeehhhhh-hhhcceeccCccccCCcccccccCcchhhhh
Confidence 9999999999999999998754321 00000111 235555444 5789999999999999999999999999999
Q ss_pred cCC
Q psy9135 556 NNM 558 (1107)
Q Consensus 556 ~G~ 558 (1107)
+|+
T Consensus 400 ~g~ 402 (415)
T KOG0678|consen 400 YGP 402 (415)
T ss_pred hCh
Confidence 997
No 31
>KOG0678|consensus
Probab=100.00 E-value=1e-42 Score=366.72 Aligned_cols=336 Identities=21% Similarity=0.274 Sum_probs=266.4
Q ss_pred ceEEEecCcceEEEeccCCCCccEEEecceeccCCCCc--------------cceeecC----------------CHHhh
Q psy9135 737 TGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL--------------RNLYEYK----------------DADDL 786 (1107)
Q Consensus 737 ~~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~~~--------------~~~~~~~----------------~~~~~ 786 (1107)
.++|+|+|+.++|.||+|...|++++|+++.......+ -+.+.|+ +.+++
T Consensus 5 ~p~V~d~Gtgytklg~agn~~p~~i~p~~ia~~~~~~~s~~~~~~~~~~~~dldf~ig~eal~~~~ysl~ypiRhg~ve~ 84 (415)
T KOG0678|consen 5 LPCVIDNGTGYTKLGYAGNTEPQFIIPTAIAVKESAAVSSKATRRVKRGTEDLDFFIGDEALDATTYSLKYPIRHGQVED 84 (415)
T ss_pred CceeeccCcceeeeeccccCCcccccceeEEeccccccccchhhhhhccccccceecccHHHhhcccccccceecccccc
Confidence 35999999999999999999999999999875422111 2334443 45578
Q ss_pred HHHHHHHHHHHHHhccccCCCCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccC--------CceE
Q psy9135 787 YGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLG--------VNTG 858 (1107)
Q Consensus 787 ~d~le~i~~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g--------~~tg 858 (1107)
||.|+++|+..++++|..+|++|..+++||+.++++.|+.++|++||.|++|++|++.++++||-++- .-||
T Consensus 85 wd~mer~~~q~ifkylr~ePedh~fLlteppln~penreytaeImfEsfnvpglyiAVqavLALaaswts~~v~er~ltG 164 (415)
T KOG0678|consen 85 WDLMERFWEQCIFKYLRAEPEDHYFLLTEPPLNQPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERFLTG 164 (415)
T ss_pred HHHHHHHHhhhhhhhhcCCcccceEEecCCCCCCchhhHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 99999999999999999999999999999999999999999999999999999999999999987642 3589
Q ss_pred EEEEcCCCceEEEEEEcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhce
Q psy9135 859 LVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSC 938 (1107)
Q Consensus 859 lVVDiG~~~T~v~PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c 938 (1107)
+|||.|++.|+|+||.|||++.++++.+|++ |+++|-+++++|++++ ..++.++ +.+..+.+||++|
T Consensus 165 ~VidsGdgvThvipvaEgyVigScik~iPia-grdiT~fiQ~llRer~--------~~iP~e~----sl~tak~iKe~yc 231 (415)
T KOG0678|consen 165 IVIDSGDGVTHVIPVAEGYVIGSCIKHIPIA-GRDITYFIQQLLRERE--------VGIPPEQ----SLETAKAIKEKYC 231 (415)
T ss_pred EEEecCCCeeEEEEeecceEEeeeecccccc-CCchhHHHHHHhhCCC--------CCCChHH----hhhhhHHHHhhhc
Confidence 9999999999999999999999999999999 9999999999998886 3344333 4569999999999
Q ss_pred eeccchHHHHHHhcCCCCCCCCceEE---eCCCC--CEEEecccccccccccccCCCC----CCCcHHHHHHHHHHcCCc
Q psy9135 939 FVTTMERSAEIAAKNPDHKYPSGFMY---PLKNG--KKIPVSGHIRETAFEVLFELDL----DMLNIATIILDSLLSVAS 1009 (1107)
Q Consensus 939 ~v~~~~~~~~~~~~~~~~~~~~~~~y---~Lpdg--~~i~l~~~erf~~~E~LF~P~~----~~~gL~~~I~~sI~~~~~ 1009 (1107)
|+.++. .++.++...... ..-++| .+-.| ..+++ |.|||..||++|+|.. -..+|++++...|++||
T Consensus 232 y~cPdi-vkef~k~d~ep~-K~ikq~~~~~~i~~~~~~vDv-gyerFlgpEiff~Pe~a~~d~~~~~~~~vd~~Iq~~p- 307 (415)
T KOG0678|consen 232 YTCPDI-VKEFAKYDREPA-KWIKQYTGINVITGKKFVVDV-GYERFLGPEIFFHPEFANPDFLTPLSEVVDWVIQHCP- 307 (415)
T ss_pred ccCcHH-HHHHHHhccCHH-HHHHHHhccchhcCCceeecc-cHHhhcChhhhcCccccCCccCcchHHHhhhhhhhCC-
Confidence 999775 333333221100 000111 11122 34566 8999999999999963 34689999999999999
Q ss_pred ccccccC-------------CCCCCCCCccchHHHHHhhhhCC----CcccccccceeeEEEE-eCCCCcceehhhhHHH
Q psy9135 1010 SDGREET-------------QYFPFRCWVNTRTPEKLCCLVGW----SNICCYKLFIKNFKFH-EFPAKENYVAWLGGAI 1071 (1107)
Q Consensus 1010 ~d~r~~L-------------~Gf~~~~~~~eRL~~EL~~l~p~----~~~~~~~~~~~~~~v~-~~~~~~~~~aW~GgSI 1071 (1107)
+|.|+.| .+| ..|++++++.+... ++.. +.++...+.|. ....-.++++|.|||+
T Consensus 308 Idvrr~ly~nivlsggst~fk~f------gr~lqrD~kr~vd~rl~~s~~l-sg~k~~~vdvqvish~~qr~avwfggs~ 380 (415)
T KOG0678|consen 308 IDVRRPLYKNIVLSGGSTMFKDF------GRRLQRDLKRLVDTRLAESEGL-SGIKSKPVDVQVLSHLLQRTAVWFGGSK 380 (415)
T ss_pred cccchhhhhHHhhccchHHHHHh------hhhccHHHHHHHHHHHHHhccc-ccCCCCCceeehhhhhhhhcceeccCcc
Confidence 9999988 778 88999999877541 1110 12233334444 2334678999999999
Q ss_pred hhcCCCccceeeeHHHHhhcCC-ccc
Q psy9135 1072 FAATESYNKRAIQKDVYLNNNV-IPD 1096 (1107)
Q Consensus 1072 lasl~~f~~~~ITk~eYeE~G~-i~d 1096 (1107)
|||.+.|-+.+-||+||+|+|+ |..
T Consensus 381 lastpef~~~~~tk~~yee~g~si~r 406 (415)
T KOG0678|consen 381 LASTPEFVPACHTKEDYEEYGPSICR 406 (415)
T ss_pred ccCCcccccccCcchhhhhhChhhhh
Confidence 9999999999999999999996 543
No 32
>KOG0681|consensus
Probab=100.00 E-value=1.1e-38 Score=355.68 Aligned_cols=167 Identities=23% Similarity=0.411 Sum_probs=151.6
Q ss_pred cceEEEecCcceEEEeccCCCCccEEEecceeccCCCCc---------------------cceeecCCHHhhHHHHHHHH
Q psy9135 736 KTGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL---------------------RNLYEYKDADDLYGLLIEFI 794 (1107)
Q Consensus 736 ~~~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~~~---------------------~~~~~~~~~~~~~d~le~i~ 794 (1107)
..|||||+||+.+||||+|+..|+++|++++.++++.+. |..|++ +.+.+|+.+|.++
T Consensus 23 ~~piVIDNGS~~~RaGw~ge~eP~lvFrNvl~r~Rdrk~~~s~t~vgnd~~~~~~~Rs~~rSPFd~-nVvtNwel~E~il 101 (645)
T KOG0681|consen 23 TIPIVIDNGSYECRAGWAGEKEPRLVFRNVLTRPRDRKLGASVTLVGNDILNFQGVRSSPRSPFDR-NVVTNWELMEQIL 101 (645)
T ss_pred CCcEEEeCCceeEeecccCCCCccchhhhhhccccccccccccccccchhhhhhhhhccCCCCCcC-CccccHHHHHHHH
Confidence 579999999999999999999999999999999986432 333432 5788999999999
Q ss_pred HHHHHhccccCC--CCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcc-cC---CceEEEEEcCCCce
Q psy9135 795 RKIFFKYFVTSP--KDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCT-LG---VNTGLVLDIGYSEA 868 (1107)
Q Consensus 795 ~~~~~~~L~~~~--~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya-~g---~~tglVVDiG~~~T 868 (1107)
+|+| ..|++++ -+||+++||+.++|...|..|.|+|||+||||+|.+.-+++.|+|. .+ ..+|+||++|++.|
T Consensus 102 DY~F-~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~~hN~~~~~~~~~liis~g~~~T 180 (645)
T KOG0681|consen 102 DYIF-GKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSFYHNYGKSSNKSGLIISMGHSAT 180 (645)
T ss_pred HHHH-HhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHHhhccCcccCcceEEEecCCCcc
Confidence 9999 7899988 5899999999999999999999999999999999999999999993 33 33699999999999
Q ss_pred EEEEEEcCEeeccceEEEeccchHHHHHHHHHHHHhh
Q psy9135 869 TLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDE 905 (1107)
Q Consensus 869 ~v~PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~ 905 (1107)
+|+||.||..+...++++++| |.+...||.+||+.+
T Consensus 181 ~vipvldG~~il~~~kRiN~G-G~qa~dYL~~Lmq~K 216 (645)
T KOG0681|consen 181 HVIPVLDGRLILKDVKRINWG-GYQAGDYLSRLMQLK 216 (645)
T ss_pred eeEEEecCchhhhcceeeccC-cchHHHHHHHHHhcc
Confidence 999999999999999999999 999999999999875
No 33
>KOG0797|consensus
Probab=100.00 E-value=4.8e-37 Score=340.29 Aligned_cols=396 Identities=18% Similarity=0.206 Sum_probs=270.1
Q ss_pred hhHHHHHHHHHHHHHhhccccCC---CCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCCceEEE
Q psy9135 90 DDLYGLLIEFIRKIFFKYFVTSP---KDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLV 166 (1107)
Q Consensus 90 ~~~~~~le~i~~~~~~~~L~~~~---~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~~tglV 166 (1107)
+...+++.+||+|++.+.|++.+ ..+.+|++.|....+...+++..+||-+++|.++.+++++++++||+|.+++||
T Consensus 200 q~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGlss~CV 279 (618)
T KOG0797|consen 200 QRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGLSSACV 279 (618)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCccceeE
Confidence 34467899999999999999987 468888888888888888889999999999999999999999999999999999
Q ss_pred EEeCCCceEEEEeecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccCCCHHHHH
Q psy9135 167 LDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIE 246 (1107)
Q Consensus 167 VDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e 246 (1107)
||||+++|+|+||.||.+++++..++++||+++++.|..+ |++.+ |||.-+... ..+++.+++
T Consensus 280 VdiGAQkTsIaCVEdGvs~~ntri~L~YGGdDitr~f~~l--------------l~rs~--FPy~d~~v~-~~~d~lLl~ 342 (618)
T KOG0797|consen 280 VDIGAQKTSIACVEDGVSLPNTRIILPYGGDDITRCFLWL--------------LRRSG--FPYQDCDVL-APIDWLLLN 342 (618)
T ss_pred EEccCcceeEEEeecCccccCceEEeccCCchHHHHHHHH--------------HHhcC--CCccccccc-ccccHHHHH
Confidence 9999999999999999999999999999999999999999 77755 778766554 478999999
Q ss_pred HHHHhceeeccchhHHHHHhcCCCCCCCCCeeeecCCCcccccCccchhhhhhhhcchhhhhhhHHHHHHhhhhhcccCC
Q psy9135 247 DIKVCSCFVTTMERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSD 326 (1107)
Q Consensus 247 ~iKe~~c~v~~~~~~~~~~~~~~~~~~~~~~~y~Lpd~~~i~i~~~~r~~~~e~lF~~~~~~~~~~~~~~~~~~~~~~~~ 326 (1107)
++||+.|++.......+......+++......|+..-+. +...++..||.|++-..... +.. ..++.+
T Consensus 343 ~LKe~Fc~l~~a~~~vQ~~~F~~R~pn~~~~kytfk~~D-------E~mlAPlaLF~P~lf~~~~t-k~~----~~q~~~ 410 (618)
T KOG0797|consen 343 QLKEKFCHLRAAELGVQLTVFSYREPNPPTLKYTFKLGD-------EVMLAPLALFYPNLFVIEGT-KSH----KNQSFP 410 (618)
T ss_pred HHHHHhccccHhhhhhhhhhhhccCCCCcceeeeeeccc-------hhhccchhhhhhhhhhcccc-ccc----cccccC
Confidence 999999999988888887777777777777777654443 34568999999997432110 000 000001
Q ss_pred CccccccccccccccCCCcchhhhccCCcccccccchhccccccCCccchhhhhhcccccccccccchhhccccccccCC
Q psy9135 327 GREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLNN 406 (1107)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 406 (1107)
..+++-.++. |.+. ...++-++.+ .|...-....+ .+...+.+..
T Consensus 411 q~d~~d~fd~---------e~~~----------------~~~~~~~~~~------~g~~~l~ls~~---i~~~~~~~~~- 455 (618)
T KOG0797|consen 411 QPDREDLFDY---------EYLL----------------EDTWKQDFGG------GGNDGLQLSDS---IGFSNRIRDQ- 455 (618)
T ss_pred CCCcccccch---------hhhh----------------hhcccccccc------ccccccccccc---cccccccccc-
Confidence 0000000000 0000 0000000000 00000000000 0000000000
Q ss_pred CCCCCcccccccCCCCCCCCCCCcccccCCcccccccccccCCC--C----CCCCHHHHHHHHHhcc-CccchhhhhccE
Q psy9135 407 NVIPDWCNLSVLGTDLKKSVNPYLHFPVSGHIRETAFEVLFELD--L----DMLNIATIILDSLLKT-GRDMKKPLAENI 479 (1107)
Q Consensus 407 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~pE~lF~p~--~----~~~gL~e~I~~sI~~~-~~d~r~~L~~nI 479 (1107)
+|.-....++|..++....|..+.++ | ...+++++=.-+ . -..+|.++|..||..+ ..|.+++|++.|
T Consensus 456 --l~~~~d~~Elg~t~~d~f~p~~~s~~-g--slaa~~i~n~~~~~~~f~gl~l~ldqsii~sid~~~sdd~~rKl~sSi 530 (618)
T KOG0797|consen 456 --LPEKPDKEELGVTLKDNFAPLEKSIV-G--SLAAASIMNKKGLYESFYGLLLALDQSIISSIDSALSDDTKRKLFSSI 530 (618)
T ss_pred --ccccccchhhccccccccCCchhhhh-h--hhhhhhhhcccceeccccchhhccchhHHHhhhhhccchhhHhhhhHH
Confidence 00000111123222222222222111 0 111222111110 0 1235667789999886 668999999999
Q ss_pred EEEcCCCCccChHHHHHHHHHhhcCCCCccccccceeEEEEcCC--CCCccccchhHHhhcCCcccccccccHHHHHhcC
Q psy9135 480 LLTGGTAMTPGLKYRLLQELRTLIESPPYKDKLFIKNFKFHEFP--AKENYVAWLGGAIFAATESYNKRAIQKDAYLNNN 557 (1107)
Q Consensus 480 vLtGG~S~ipGf~eRL~~EL~~~~~~~~~~~~~~~~~v~v~~~~--~~~~~~aW~Ggsilasl~~f~~~~ITk~eYeE~G 557 (1107)
.++||..++||+.+.|++.+....|+ +... ...|.|+.+| .||++.+|+||+|+|.+..-+++||++.||+.+|
T Consensus 531 l~Vgga~~~~g~~~~LEeRi~n~~pp--~~~~--I~~VsVip~prdMdp~~VaWKGaaIla~l~~~~ELwI~~~dW~~~G 606 (618)
T KOG0797|consen 531 LLVGGAGLFPGLVAALEERILNAIPP--GREA--IDTVSVIPPPRDMDPQFVAWKGAAILAILDFVRELWIENSDWQVHG 606 (618)
T ss_pred HhhcccccchhHHHHHHHHHhccCCc--cccc--cCceeecCCCcCCCchheEecchhhhhHHHHHHHHheechhHhhhh
Confidence 99999999999999999999987775 2222 4679999888 5899999999999999999999999999999999
Q ss_pred C
Q psy9135 558 M 558 (1107)
Q Consensus 558 ~ 558 (1107)
.
T Consensus 607 ~ 607 (618)
T KOG0797|consen 607 V 607 (618)
T ss_pred h
Confidence 7
No 34
>KOG0797|consensus
Probab=99.96 E-value=2.1e-28 Score=271.93 Aligned_cols=285 Identities=17% Similarity=0.191 Sum_probs=218.6
Q ss_pred hHHHHHHHHHHHHHhccccCC---CCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCCceEEEEE
Q psy9135 786 LYGLLIEFIRKIFFKYFVTSP---KDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLD 862 (1107)
Q Consensus 786 ~~d~le~i~~~~~~~~L~~~~---~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~~tglVVD 862 (1107)
...++++||+|++.+.|++.+ ..+.++++.|....+...+++..+||-+++|.++.++.++++++||+|.+++||||
T Consensus 202 l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGlss~CVVd 281 (618)
T KOG0797|consen 202 LCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGLSSACVVD 281 (618)
T ss_pred HHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCccceeEEE
Confidence 356899999999999999988 46889999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEEEEEcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhh----cccHHHHHHHHHhce
Q psy9135 863 IGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVE----NLSDSIIEDIKVCSC 938 (1107)
Q Consensus 863 iG~~~T~v~PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~----~l~~~~v~~iKe~~c 938 (1107)
||++.|+|+||-||.+++++..++++| |+++++.+..+|++.+ +|+.+ . ..++.+++++||+.|
T Consensus 282 iGAQkTsIaCVEdGvs~~ntri~L~YG-GdDitr~f~~ll~rs~----------FPy~d-~~v~~~~d~lLl~~LKe~Fc 349 (618)
T KOG0797|consen 282 IGAQKTSIACVEDGVSLPNTRIILPYG-GDDITRCFLWLLRRSG----------FPYQD-CDVLAPIDWLLLNQLKEKFC 349 (618)
T ss_pred ccCcceeEEEeecCccccCceEEeccC-CchHHHHHHHHHHhcC----------CCccc-ccccccccHHHHHHHHHHhc
Confidence 999999999999999999999999999 9999999999999987 22222 1 245679999999999
Q ss_pred eeccchHHHHHHhcCCCCCCCCceEEeCCCCCEEEecccccccccccccCCCC---------------------------
Q psy9135 939 FVTTMERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDL--------------------------- 991 (1107)
Q Consensus 939 ~v~~~~~~~~~~~~~~~~~~~~~~~y~Lpdg~~i~l~~~erf~~~E~LF~P~~--------------------------- 991 (1107)
.........+........+......| ++.+ +.|...+|=.||.|.+
T Consensus 350 ~l~~a~~~vQ~~~F~~R~pn~~~~ky------tfk~-~DE~mlAPlaLF~P~lf~~~~tk~~~~q~~~q~d~~d~fd~e~ 422 (618)
T KOG0797|consen 350 HLRAAELGVQLTVFSYREPNPPTLKY------TFKL-GDEVMLAPLALFYPNLFVIEGTKSHKNQSFPQPDREDLFDYEY 422 (618)
T ss_pred cccHhhhhhhhhhhhccCCCCcceee------eeec-cchhhccchhhhhhhhhhccccccccccccCCCCcccccchhh
Confidence 98865433221111000000111111 1122 3334444444444310
Q ss_pred ---------------------------------------------------------------------------C----
Q psy9135 992 ---------------------------------------------------------------------------D---- 992 (1107)
Q Consensus 992 ---------------------------------------------------------------------------~---- 992 (1107)
.
T Consensus 423 ~~~~~~~~~~~~~g~~~l~ls~~i~~~~~~~~~l~~~~d~~Elg~t~~d~f~p~~~s~~gslaa~~i~n~~~~~~~f~gl 502 (618)
T KOG0797|consen 423 LLEDTWKQDFGGGGNDGLQLSDSIGFSNRIRDQLPEKPDKEELGVTLKDNFAPLEKSIVGSLAAASIMNKKGLYESFYGL 502 (618)
T ss_pred hhhhcccccccccccccccccccccccccccccccccccchhhccccccccCCchhhhhhhhhhhhhhcccceeccccch
Confidence 0
Q ss_pred CCcHHHHHHHHHHcCCcccccccC-------------CCCCCCCCccchHHHHHhhhhCCCcccccccceeeEEEEeCC-
Q psy9135 993 MLNIATIILDSLLSVASSDGREET-------------QYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFP- 1058 (1107)
Q Consensus 993 ~~gL~~~I~~sI~~~~~~d~r~~L-------------~Gf~~~~~~~eRL~~EL~~l~p~~~~~~~~~~~~~~~v~~~~- 1058 (1107)
..++.+.|..||..|.+.|.++.| ||+ .+-|++.+....|. ....+.++.|+.+|
T Consensus 503 ~l~ldqsii~sid~~~sdd~~rKl~sSil~Vgga~~~~g~------~~~LEeRi~n~~pp-----~~~~I~~VsVip~pr 571 (618)
T KOG0797|consen 503 LLALDQSIISSIDSALSDDTKRKLFSSILLVGGAGLFPGL------VAALEERILNAIPP-----GREAIDTVSVIPPPR 571 (618)
T ss_pred hhccchhHHHhhhhhccchhhHhhhhHHHhhcccccchhH------HHHHHHHHhccCCc-----cccccCceeecCCCc
Confidence 125556788889888657788877 777 88888877777662 12345678888665
Q ss_pred -CCcceehhhhHHHhhcCCCccceeeeHHHHhhcCC-ccceecc
Q psy9135 1059 -AKENYVAWLGGAIFAATESYNKRAIQKDVYLNNNV-IPDWCNL 1100 (1107)
Q Consensus 1059 -~~~~~~aW~GgSIlasl~~f~~~~ITk~eYeE~G~-i~d~~~~ 1100 (1107)
.++++-+|.||+|||.+..-.++||++.||+-+|. +.-++|.
T Consensus 572 dMdp~~VaWKGaaIla~l~~~~ELwI~~~dW~~~G~RvL~~k~~ 615 (618)
T KOG0797|consen 572 DMDPQFVAWKGAAILAILDFVRELWIENSDWQVHGVRVLQYKKY 615 (618)
T ss_pred CCCchheEecchhhhhHHHHHHHHheechhHhhhhhhhhhhccc
Confidence 69999999999999999999999999999999995 7777765
No 35
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=99.94 E-value=9e-26 Score=259.90 Aligned_cols=183 Identities=15% Similarity=0.085 Sum_probs=141.7
Q ss_pred EEEecCCceeEEeeecCcccccccccceeccCCccccceec---------------------cCchhhHHHHHHHHHHHH
Q psy9135 45 VVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYE---------------------YKDADDLYGLLIEFIRKI 103 (1107)
Q Consensus 45 iViD~GS~~~K~G~age~~P~~i~ps~v~~~~~~~~~~~~~---------------------~~~~~~~~~~le~i~~~~ 103 (1107)
++||+||.++|+|++|++ +....||+|+..+... +.+++ .++.+.+|+.++.+|+|+
T Consensus 11 vgiDlGt~~t~i~~~~~~-~~~~~ps~v~~~~~~~-~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~e~ll~~~ 88 (335)
T PRK13930 11 IGIDLGTANTLVYVKGKG-IVLNEPSVVAIDTKTG-KVLAVGEEAKEMLGRTPGNIEAIRPLKDGVIADFEATEAMLRYF 88 (335)
T ss_pred eEEEcCCCcEEEEECCCC-EEEecCCEEEEECCCC-eEEEEcHHHHHhhhcCCCCeEEeecCCCCeEcCHHHHHHHHHHH
Confidence 777777777777787664 4556788887653211 01111 224556799999999999
Q ss_pred HhhccccCC-CCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC-----ceEEEEEeCCCceEEE
Q psy9135 104 FFKYFVTSP-KDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLL 177 (1107)
Q Consensus 104 ~~~~L~~~~-~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~-----~tglVVDiG~~~T~V~ 177 (1107)
+.+.+...+ ..++++++.|...+...|+.+.+ +||.+|++.+++++++++|+|++|. .+++|||+|+++|+++
T Consensus 89 ~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~-~~e~~g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG~gttdvs 167 (335)
T PRK13930 89 IKKARGRRFFRKPRIVICVPSGITEVERRAVRE-AAEHAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGGGTTEVA 167 (335)
T ss_pred HHHHhhcccCCCCcEEEEECCCCCHHHHHHHHH-HHHHcCCCeEEecccHHHHHHhcCCCcCCCCceEEEEeCCCeEEEE
Confidence 955444333 46889999999999988887776 7999999999999999999999987 5789999999999999
Q ss_pred EeecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccCCCHHHHHHHHHhceeecc
Q psy9135 178 PVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTT 257 (1107)
Q Consensus 178 PV~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~iKe~~c~v~~ 257 (1107)
||.+|.++. ....++||+++|++|.++ +++.. . -..+...+|++|+++|++..
T Consensus 168 ~v~~g~~~~--~~~~~lGG~~id~~l~~~--------------l~~~~-~----------~~~~~~~ae~~K~~~~~~~~ 220 (335)
T PRK13930 168 VISLGGIVY--SESIRVAGDEMDEAIVQY--------------VRRKY-N----------LLIGERTAEEIKIEIGSAYP 220 (335)
T ss_pred EEEeCCEEe--ecCcCchhHHHHHHHHHH--------------HHHHh-C----------CCCCHHHHHHHHHHhhcCcC
Confidence 999999885 467899999999999998 44321 0 01346789999999998875
No 36
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=99.93 E-value=6e-25 Score=252.89 Aligned_cols=182 Identities=13% Similarity=0.057 Sum_probs=141.8
Q ss_pred eEEEecCCceeEEeeecCcccccccccceeccCCccccceecc---------------------CchhhHHHHHHHHHHH
Q psy9135 44 GVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYEY---------------------KDADDLYGLLIEFIRK 102 (1107)
Q Consensus 44 ~iViD~GS~~~K~G~age~~P~~i~ps~v~~~~~~~~~~~~~~---------------------~~~~~~~~~le~i~~~ 102 (1107)
-|+||+||.++|+|++|++. ...+||+|+.++.... .+++| ++.+.+|+.++.+|++
T Consensus 7 ~igIDlGt~~~~i~~~~~~~-~~~~ps~v~~~~~~~~-~~~vG~~a~~~~~~~~~~~~~~~pi~~G~i~d~~~~~~ll~~ 84 (334)
T PRK13927 7 DLGIDLGTANTLVYVKGKGI-VLNEPSVVAIRTDTKK-VLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFDVTEKMLKY 84 (334)
T ss_pred eeEEEcCcceEEEEECCCcE-EEecCCEEEEECCCCe-EEEecHHHHHHhhcCCCCEEEEecCCCCeecCHHHHHHHHHH
Confidence 47888888888888988876 5689999998754211 11222 2455679999999999
Q ss_pred HHhhccccCCCCCe-EEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC-----ceEEEEEeCCCceEE
Q psy9135 103 IFFKYFVTSPKDKR-IVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATL 176 (1107)
Q Consensus 103 ~~~~~L~~~~~~~~-vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~-----~tglVVDiG~~~T~V 176 (1107)
++.+.++. +.++| ++++.| .+....++++++.+||.+|++.+.++++|++|+|++|. .+++|||+|+++|++
T Consensus 85 ~~~~~~~~-~~~~~~~vi~vP-~~~~~~~r~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lvvDiGggttdv 162 (334)
T PRK13927 85 FIKKVHKN-FRPSPRVVICVP-SGITEVERRAVRESALGAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVVDIGGGTTEV 162 (334)
T ss_pred HHHHHhhc-cCCCCcEEEEeC-CCCCHHHHHHHHHHHHHcCCCeeccCCChHHHHHHcCCcccCCCeEEEEEeCCCeEEE
Confidence 99877776 66665 555555 66677777889999999999999999999999999987 457999999999999
Q ss_pred EEe-ecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccCCCHHHHHHHHHhceee
Q psy9135 177 LPV-YEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFV 255 (1107)
Q Consensus 177 ~PV-~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~iKe~~c~v 255 (1107)
+++ ++|.+..+. .++||+++|++|.++ +.+.- . ...+...+|++|+++|++
T Consensus 163 s~v~~~~~~~~~~---~~lGG~~id~~l~~~--------------l~~~~-~----------~~~~~~~ae~iK~~~~~~ 214 (334)
T PRK13927 163 AVISLGGIVYSKS---VRVGGDKFDEAIINY--------------VRRNY-N----------LLIGERTAERIKIEIGSA 214 (334)
T ss_pred EEEecCCeEeeCC---cCChHHHHHHHHHHH--------------HHHHh-C----------cCcCHHHHHHHHHHhhcc
Confidence 999 788776654 479999999999998 43221 0 113567899999999988
Q ss_pred cc
Q psy9135 256 TT 257 (1107)
Q Consensus 256 ~~ 257 (1107)
..
T Consensus 215 ~~ 216 (334)
T PRK13927 215 YP 216 (334)
T ss_pred CC
Confidence 64
No 37
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=99.91 E-value=4.3e-23 Score=237.13 Aligned_cols=142 Identities=15% Similarity=0.142 Sum_probs=117.1
Q ss_pred CchhhHHHHHHHHHHHHHhhccccCCCCC-eEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC----
Q psy9135 87 KDADDLYGLLIEFIRKIFFKYFVTSPKDK-RIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV---- 161 (1107)
Q Consensus 87 ~~~~~~~~~le~i~~~~~~~~L~~~~~~~-~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~---- 161 (1107)
++.+.+|+.++.+|+|++.+.+......+ +++++.|..++...|+. ++.+||.+|++.++++++|++|+|++|.
T Consensus 70 ~G~i~d~~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~-~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~~ 148 (333)
T TIGR00904 70 DGVIADFEVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRA-VKESALSAGAREVYLIEEPMAAAIGAGLPVEE 148 (333)
T ss_pred CCEEEcHHHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHH-HHHHHHHcCCCeEEEecCHHHHHHhcCCcccC
Confidence 45677899999999999977665432222 69999999999999987 6678999999999999999999999987
Q ss_pred -ceEEEEEeCCCceEEEEe-ecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccC
Q psy9135 162 -NTGLVLDIGYSEATLLPV-YEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVEN 239 (1107)
Q Consensus 162 -~tglVVDiG~~~T~V~PV-~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 239 (1107)
.+++|||+|+++|++++| ++|.+..+. .++||+++|+.|.++ +++.. . ..
T Consensus 149 ~~~~lVvDiG~gttdvs~v~~~~~~~~~~---~~lGG~did~~l~~~--------------l~~~~-~----------~~ 200 (333)
T TIGR00904 149 PTGSMVVDIGGGTTEVAVISLGGIVVSRS---IRVGGDEFDEAIINY--------------IRRTY-N----------LL 200 (333)
T ss_pred CceEEEEEcCCCeEEEEEEEeCCEEecCC---ccchHHHHHHHHHHH--------------HHHHh-c----------cc
Confidence 689999999999999999 888777654 489999999999998 43221 0 11
Q ss_pred CCHHHHHHHHHhceeecc
Q psy9135 240 LSDSIIEDIKVCSCFVTT 257 (1107)
Q Consensus 240 ~~~~~~e~iKe~~c~v~~ 257 (1107)
.+...+|++|+++|++..
T Consensus 201 ~~~~~ae~lK~~l~~~~~ 218 (333)
T TIGR00904 201 IGEQTAERIKIEIGSAYP 218 (333)
T ss_pred CCHHHHHHHHHHHhcccc
Confidence 356789999999998764
No 38
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=99.89 E-value=2.6e-22 Score=230.36 Aligned_cols=142 Identities=13% Similarity=0.203 Sum_probs=118.2
Q ss_pred CchhhHHHHHHHHHHHHHhh---ccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCC---
Q psy9135 87 KDADDLYGLLIEFIRKIFFK---YFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLG--- 160 (1107)
Q Consensus 87 ~~~~~~~~~le~i~~~~~~~---~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g--- 160 (1107)
++.+.+|+.++.+|+|++.+ .++.++..++++++.|...+..+|+.+.+ .||..|++.+.++.++++|++++|
T Consensus 68 ~G~I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~-a~~~ag~~~~~li~ep~Aaa~~~g~~~ 146 (335)
T PRK13929 68 DGVIADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISD-AVKNCGAKNVHLIEEPVAAAIGADLPV 146 (335)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHH-HHHHcCCCeeEeecCHHHHHHhcCCCc
Confidence 35567899999999999974 56666666799999999999999999999 999999999999999999999997
Q ss_pred --CceEEEEEeCCCceEEEEe-ecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccc
Q psy9135 161 --VNTGLVLDIGYSEATLLPV-YEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDV 237 (1107)
Q Consensus 161 --~~tglVVDiG~~~T~V~PV-~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~ 237 (1107)
..+++|||+|+++|+++++ ++|....+ ..++||+++|++|.+. +++.. ..
T Consensus 147 ~~~~~~lvvDiG~gtt~v~vi~~~~~~~~~---~~~~GG~~id~~l~~~--------------l~~~~-~~--------- 199 (335)
T PRK13929 147 DEPVANVVVDIGGGTTEVAIISFGGVVSCH---SIRIGGDQLDEDIVSF--------------VRKKY-NL--------- 199 (335)
T ss_pred CCCceEEEEEeCCCeEEEEEEEeCCEEEec---CcCCHHHHHHHHHHHH--------------HHHHh-Cc---------
Confidence 4689999999999999999 66655443 4689999999999998 54321 11
Q ss_pred cCCCHHHHHHHHHhceeecc
Q psy9135 238 ENLSDSIIEDIKVCSCFVTT 257 (1107)
Q Consensus 238 ~~~~~~~~e~iKe~~c~v~~ 257 (1107)
..+...+|++|+++|++..
T Consensus 200 -~~~~~~AE~iK~~l~~~~~ 218 (335)
T PRK13929 200 -LIGERTAEQVKMEIGYALI 218 (335)
T ss_pred -CcCHHHHHHHHHHHcCCCC
Confidence 1246789999999998854
No 39
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=99.87 E-value=3.9e-22 Score=229.72 Aligned_cols=284 Identities=13% Similarity=0.073 Sum_probs=205.7
Q ss_pred eEEEecCcceEEEeccCCCCccEEEecceeccCC-CCc-------cc-----------ee-ecCCHHhhHHHHHHHHHHH
Q psy9135 738 GVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHT-NKL-------RN-----------LY-EYKDADDLYGLLIEFIRKI 797 (1107)
Q Consensus 738 ~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~-~~~-------~~-----------~~-~~~~~~~~~d~le~i~~~~ 797 (1107)
.|+||+||+++|+|++|++ +....||+++.... ++. +. .+ ..++.+.+|+.++.+|+|+
T Consensus 10 ~vgiDlGt~~t~i~~~~~~-~~~~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~e~ll~~~ 88 (335)
T PRK13930 10 DIGIDLGTANTLVYVKGKG-IVLNEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIEAIRPLKDGVIADFEATEAMLRYF 88 (335)
T ss_pred ceEEEcCCCcEEEEECCCC-EEEecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeEEeecCCCCeEcCHHHHHHHHHHH
Confidence 3999999999999999876 46668999986542 110 00 00 1246778899999999999
Q ss_pred HHhccccCC-CCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCC-----ceEEEEEcCCCceEEE
Q psy9135 798 FFKYFVTSP-KDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLL 871 (1107)
Q Consensus 798 ~~~~L~~~~-~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~-----~tglVVDiG~~~T~v~ 871 (1107)
+.+.+...+ ...+++++.|...+...|+.+.+ +||.++++.+++++++++|+|++|. ++++|||+|++.|+++
T Consensus 89 ~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~-~~e~~g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG~gttdvs 167 (335)
T PRK13930 89 IKKARGRRFFRKPRIVICVPSGITEVERRAVRE-AAEHAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGGGTTEVA 167 (335)
T ss_pred HHHHhhcccCCCCcEEEEECCCCCHHHHHHHHH-HHHHcCCCeEEecccHHHHHHhcCCCcCCCCceEEEEeCCCeEEEE
Confidence 965555333 46789999999999988888777 6899999999999999999999987 5789999999999999
Q ss_pred EEEcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhceeeccchHHHHHHh
Q psy9135 872 PVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIAA 951 (1107)
Q Consensus 872 PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c~v~~~~~~~~~~~ 951 (1107)
||.+|.++. ....++| |+++|+.|.+++.++. .+ ..+.+.++++|+++|++..+....+...
T Consensus 168 ~v~~g~~~~--~~~~~lG-G~~id~~l~~~l~~~~---------~~------~~~~~~ae~~K~~~~~~~~~~~~~~~~~ 229 (335)
T PRK13930 168 VISLGGIVY--SESIRVA-GDEMDEAIVQYVRRKY---------NL------LIGERTAEEIKIEIGSAYPLDEEESMEV 229 (335)
T ss_pred EEEeCCEEe--ecCcCch-hHHHHHHHHHHHHHHh---------CC------CCCHHHHHHHHHHhhcCcCCCCCceEEE
Confidence 999999875 4678999 9999999999997652 11 1233579999999999886531111000
Q ss_pred cCCCCCCCCceEEeCCCCCEEEecccccccccccccCCCCCCCcHHHHHHHHHHcCCcccccccC--------CCCCCCC
Q psy9135 952 KNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREET--------QYFPFRC 1023 (1107)
Q Consensus 952 ~~~~~~~~~~~~y~Lpdg~~i~l~~~erf~~~E~LF~P~~~~~gL~~~I~~sI~~~~~~d~r~~L--------~Gf~~~~ 1023 (1107)
. .....+.+|+ .+.+ +.+++ .|++|.| ..+|.+.|.++|++|+ .+.+.++ .|-+..+
T Consensus 230 ~------~~~~~~~~~~--~~~i-~~~~~--~e~i~~~---~~~i~~~i~~~l~~~~-~~~~~~~~~~~IvL~GG~s~ip 294 (335)
T PRK13930 230 R------GRDLVTGLPK--TIEI-SSEEV--REALAEP---LQQIVEAVKSVLEKTP-PELAADIIDRGIVLTGGGALLR 294 (335)
T ss_pred E------CccCCCCCCe--eEEE-CHHHH--HHHHHHH---HHHHHHHHHHHHHhCC-HHHhhHHHhCCEEEECchhcch
Confidence 0 0111233443 4556 45565 4888876 2489999999999998 7766433 2222222
Q ss_pred CccchHHHHHhhhhCCCcccccccceeeEEEEeCCCCcceehhhhHHHhhc
Q psy9135 1024 WVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAA 1074 (1107)
Q Consensus 1024 ~~~eRL~~EL~~l~p~~~~~~~~~~~~~~~v~~~~~~~~~~aW~GgSIlas 1074 (1107)
++.+||++++.. + +++ ..+|..++=+|+++++.
T Consensus 295 g~~~~l~~~~~~--~-------------v~~---~~~p~~ava~Ga~~~~~ 327 (335)
T PRK13930 295 GLDKLLSEETGL--P-------------VHI---AEDPLTCVARGTGKALE 327 (335)
T ss_pred hHHHHHHHHHCC--C-------------cee---cCCHHHHHHHHHHHHHh
Confidence 229999998852 2 112 22567788899999974
No 40
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=99.86 E-value=1.4e-21 Score=224.83 Aligned_cols=276 Identities=12% Similarity=0.053 Sum_probs=202.3
Q ss_pred eEEEecCcceEEEeccCCCCccEEEecceeccCCC-Cc------------c--c-----eeecCCHHhhHHHHHHHHHHH
Q psy9135 738 GVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTN-KL------------R--N-----LYEYKDADDLYGLLIEFIRKI 797 (1107)
Q Consensus 738 ~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~-~~------------~--~-----~~~~~~~~~~~d~le~i~~~~ 797 (1107)
.|+||+||.++|+|++|++. ...+||+++.++.. .. + . ....++.+.+|+.++.+|+++
T Consensus 7 ~igIDlGt~~~~i~~~~~~~-~~~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~~~pi~~G~i~d~~~~~~ll~~~ 85 (334)
T PRK13927 7 DLGIDLGTANTLVYVKGKGI-VLNEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFDVTEKMLKYF 85 (334)
T ss_pred eeEEEcCcceEEEEECCCcE-EEecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEEEecCCCCeecCHHHHHHHHHHH
Confidence 59999999999999999877 56899999987542 21 0 0 012336778999999999999
Q ss_pred HHhccccCCCCce-EEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCC-----ceEEEEEcCCCceEEE
Q psy9135 798 FFKYFVTSPKDKR-IVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLL 871 (1107)
Q Consensus 798 ~~~~L~~~~~~~~-vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~-----~tglVVDiG~~~T~v~ 871 (1107)
+.+.++. +.++| ++++.| .+....++++++.+||.++++.++++++|++|+|++|. ++++|||+|++.|+++
T Consensus 86 ~~~~~~~-~~~~~~~vi~vP-~~~~~~~r~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lvvDiGggttdvs 163 (334)
T PRK13927 86 IKKVHKN-FRPSPRVVICVP-SGITEVERRAVRESALGAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVVDIGGGTTEVA 163 (334)
T ss_pred HHHHhhc-cCCCCcEEEEeC-CCCCHHHHHHHHHHHHHcCCCeeccCCChHHHHHHcCCcccCCCeEEEEEeCCCeEEEE
Confidence 9887766 66664 555555 56666777889999999999999999999999999987 4579999999999999
Q ss_pred EE-EcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhceeeccchHHHHHH
Q psy9135 872 PV-YEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIA 950 (1107)
Q Consensus 872 PV-~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c~v~~~~~~~~~~ 950 (1107)
|+ ++|+...+.+ ++| |+++|+.|.+++.++. .+ ..+...++++|+++|++..+....+..
T Consensus 164 ~v~~~~~~~~~~~---~lG-G~~id~~l~~~l~~~~---------~~------~~~~~~ae~iK~~~~~~~~~~~~~~~~ 224 (334)
T PRK13927 164 VISLGGIVYSKSV---RVG-GDKFDEAIINYVRRNY---------NL------LIGERTAERIKIEIGSAYPGDEVLEME 224 (334)
T ss_pred EEecCCeEeeCCc---CCh-HHHHHHHHHHHHHHHh---------Cc------CcCHHHHHHHHHHhhccCCCCCCceEE
Confidence 99 8888776654 799 9999999999997542 11 122347999999999987532100000
Q ss_pred hcCCCCCCCCceEEeCCCCCEEEecccccccccccccCCCCCCCcHHHHHHHHHHcCCcccccccC--------------
Q psy9135 951 AKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREET-------------- 1016 (1107)
Q Consensus 951 ~~~~~~~~~~~~~y~Lpdg~~i~l~~~erf~~~E~LF~P~~~~~gL~~~I~~sI~~~~~~d~r~~L-------------- 1016 (1107)
.. .....+.+|+ .+.+ +.++|. |++|+|- .+|.+.|.++|++|+ .++++.+
T Consensus 225 ~~------~~~~~~~~~~--~~~i-~~~~~~--e~i~~~~---~~i~~~i~~~l~~~~-~~~~~~~~~~~IvL~GG~s~i 289 (334)
T PRK13927 225 VR------GRDLVTGLPK--TITI-SSNEIR--EALQEPL---SAIVEAVKVALEQTP-PELAADIVDRGIVLTGGGALL 289 (334)
T ss_pred Ee------CcccCCCCCe--EEEE-CHHHHH--HHHHHHH---HHHHHHHHHHHHHCC-chhhhhhhcCCEEEECchhhh
Confidence 00 0011123333 4666 566663 8888763 479999999999998 7765432
Q ss_pred CCCCCCCCccchHHHHHhhhhCCCcccccccceeeEEEEeCCCCcceehhhhHHHhhc
Q psy9135 1017 QYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAA 1074 (1107)
Q Consensus 1017 ~Gf~~~~~~~eRL~~EL~~l~p~~~~~~~~~~~~~~~v~~~~~~~~~~aW~GgSIlas 1074 (1107)
||+ .+||++++.. + +++ ..+|..++=.||++++.
T Consensus 290 pgl------~~~l~~~~~~--~-------------v~~---~~~P~~ava~Ga~~~~~ 323 (334)
T PRK13927 290 RGL------DKLLSEETGL--P-------------VHV---AEDPLTCVARGTGKALE 323 (334)
T ss_pred hHH------HHHHHHHHCC--C-------------cEe---cCCHHHHHHHHHHHHHh
Confidence 677 9999998842 2 122 23567888899999974
No 41
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.81 E-value=4.3e-19 Score=204.25 Aligned_cols=142 Identities=13% Similarity=0.101 Sum_probs=113.1
Q ss_pred CchhhHHHHHHHHHHHHHhhcccc-CCCCCe-EEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC---
Q psy9135 87 KDADDLYGLLIEFIRKIFFKYFVT-SPKDKR-IVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV--- 161 (1107)
Q Consensus 87 ~~~~~~~~~le~i~~~~~~~~L~~-~~~~~~-vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~--- 161 (1107)
++.+.+|+.++.+|+|++. ++.. .+.++| ++++.|.. ....+++.++..||..|++.+.+++++++|+|++|.
T Consensus 67 ~G~i~d~~~~~~~l~~~~~-~~~~~~~~~~p~~vitvP~~-~~~~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~ 144 (336)
T PRK13928 67 DGVIADYDVTEKMLKYFIN-KACGKRFFSKPRIMICIPTG-ITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLDIS 144 (336)
T ss_pred CCeEecHHHHHHHHHHHHH-HHhccCCCCCCeEEEEeCCC-CCHHHHHHHHHHHHHcCCCceEecccHHHHHHHcCCccc
Confidence 3667789999999999994 4433 345677 88888555 455677788899999999999999999999999987
Q ss_pred --ceEEEEEeCCCceEEEEeecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccC
Q psy9135 162 --NTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVEN 239 (1107)
Q Consensus 162 --~tglVVDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 239 (1107)
..++|||+|+++|+|++|.+|.++.. ...++||+++|+.|.+. +++.. . ..
T Consensus 145 ~~~~~lVvDiGggttdvsvv~~g~~~~~--~~~~lGG~did~~i~~~--------------l~~~~-~----------~~ 197 (336)
T PRK13928 145 QPSGNMVVDIGGGTTDIAVLSLGGIVTS--SSIKVAGDKFDEAIIRY--------------IRKKY-K----------LL 197 (336)
T ss_pred CCCeEEEEEeCCCeEEEEEEEeCCEEEe--CCcCCHHHHHHHHHHHH--------------HHHHh-c----------hh
Confidence 67999999999999999999987754 46899999999999998 43211 0 01
Q ss_pred CCHHHHHHHHHhceeecc
Q psy9135 240 LSDSIIEDIKVCSCFVTT 257 (1107)
Q Consensus 240 ~~~~~~e~iKe~~c~v~~ 257 (1107)
++...+|++|+++|++..
T Consensus 198 ~~~~~ae~lK~~~~~~~~ 215 (336)
T PRK13928 198 IGERTAEEIKIKIGTAFP 215 (336)
T ss_pred cCHHHHHHHHHHhccccc
Confidence 245679999999987643
No 42
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.81 E-value=2.9e-19 Score=200.82 Aligned_cols=144 Identities=17% Similarity=0.180 Sum_probs=108.9
Q ss_pred chhhHHHHHHHHHHHHHhhccccC-CCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC-----
Q psy9135 88 DADDLYGLLIEFIRKIFFKYFVTS-PKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV----- 161 (1107)
Q Consensus 88 ~~~~~~~~le~i~~~~~~~~L~~~-~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~----- 161 (1107)
+.+.+++..+.+++|.+.+..+.. .....++++.|.-.+...|+.+.+.+- ..|+..++++++|+++++|+|.
T Consensus 66 GvI~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~-~aGa~~V~li~ep~AaAiGaGl~i~~~ 144 (326)
T PF06723_consen 66 GVIADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAAR-QAGARKVYLIEEPIAAAIGAGLDIFEP 144 (326)
T ss_dssp TEESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHH-HTT-SEEEEEEHHHHHHHHTT--TTSS
T ss_pred CcccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHH-HcCCCEEEEecchHHHHhcCCCCCCCC
Confidence 556678999999999997766642 355669999999999999999998884 6899999999999999999985
Q ss_pred ceEEEEEeCCCceEEEEeecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccCCC
Q psy9135 162 NTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLS 241 (1107)
Q Consensus 162 ~tglVVDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~ 241 (1107)
...+|||||+++|.++-+..|-++.. +.+++||+++++.+.+. ++++.. -.++
T Consensus 145 ~g~miVDIG~GtTdiavislggiv~s--~si~~gG~~~DeaI~~~--------------ir~~y~-----------l~Ig 197 (326)
T PF06723_consen 145 RGSMIVDIGGGTTDIAVISLGGIVAS--RSIRIGGDDIDEAIIRY--------------IREKYN-----------LLIG 197 (326)
T ss_dssp S-EEEEEE-SS-EEEEEEETTEEEEE--EEES-SHHHHHHHHHHH--------------HHHHHS-----------EE--
T ss_pred CceEEEEECCCeEEEEEEECCCEEEE--EEEEecCcchhHHHHHH--------------HHHhhC-----------cccC
Confidence 36799999999999999999999865 88999999999999999 554421 2367
Q ss_pred HHHHHHHHHhceeeccch
Q psy9135 242 DSIIEDIKVCSCFVTTME 259 (1107)
Q Consensus 242 ~~~~e~iKe~~c~v~~~~ 259 (1107)
...+|++|+++.++....
T Consensus 198 ~~tAE~iK~~~g~~~~~~ 215 (326)
T PF06723_consen 198 ERTAEKIKIEIGSASPPE 215 (326)
T ss_dssp HHHHHHHHHHH-BSS--H
T ss_pred HHHHHHHHHhcceeeccC
Confidence 899999999999887543
No 43
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=99.77 E-value=2e-18 Score=198.48 Aligned_cols=276 Identities=13% Similarity=0.077 Sum_probs=199.1
Q ss_pred EEEecCcceEEEeccCCCCccEEEecceeccCC----CC-c-------cc------------eeecCCHHhhHHHHHHHH
Q psy9135 739 VVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHT----NK-L-------RN------------LYEYKDADDLYGLLIEFI 794 (1107)
Q Consensus 739 vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~----~~-~-------~~------------~~~~~~~~~~~d~le~i~ 794 (1107)
|=||+||.++++-..+.. -....||+++.... .+ . +. .-..++.+.+|+.++++|
T Consensus 5 ~giDlGt~~s~i~~~~~~-~~~~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~~~~~ 83 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGRG-IVLNEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIVAIRPMKDGVIADFEVTEKMI 83 (333)
T ss_pred eEEecCcceEEEEECCCC-EEEecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEEEEecCCCCEEEcHHHHHHHH
Confidence 889999999998654432 23344777765533 11 0 00 002346778999999999
Q ss_pred HHHHHhccccCCCCc-eEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCC-----ceEEEEEcCCCce
Q psy9135 795 RKIFFKYFVTSPKDK-RIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEA 868 (1107)
Q Consensus 795 ~~~~~~~L~~~~~~~-~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~-----~tglVVDiG~~~T 868 (1107)
+|++.+.+....... +++++.|...+...|+. ++.+||.++++.++++++|++|+|++|. ++++|||+|++.|
T Consensus 84 ~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~-~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~gtt 162 (333)
T TIGR00904 84 KYFIKQVHSRKSFFKPRIVICVPSGITPVERRA-VKESALSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGGGTT 162 (333)
T ss_pred HHHHHHHhcccccCCCcEEEEeCCCCCHHHHHH-HHHHHHHcCCCeEEEecCHHHHHHhcCCcccCCceEEEEEcCCCeE
Confidence 999987665332222 69999999999999987 5568999999999999999999999997 6899999999999
Q ss_pred EEEEE-EcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhceeeccchHH-
Q psy9135 869 TLLPV-YEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERS- 946 (1107)
Q Consensus 869 ~v~PV-~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c~v~~~~~~- 946 (1107)
++++| ++|+...+.+ ++| |+++|+.|.+++.++. . ...+.+.++++|+++|++..+...
T Consensus 163 dvs~v~~~~~~~~~~~---~lG-G~did~~l~~~l~~~~---------~------~~~~~~~ae~lK~~l~~~~~~~~~~ 223 (333)
T TIGR00904 163 EVAVISLGGIVVSRSI---RVG-GDEFDEAIINYIRRTY---------N------LLIGEQTAERIKIEIGSAYPLNDEP 223 (333)
T ss_pred EEEEEEeCCEEecCCc---cch-HHHHHHHHHHHHHHHh---------c------ccCCHHHHHHHHHHHhccccccccc
Confidence 99999 8888776654 799 9999999999987541 0 112345899999999998754210
Q ss_pred HHHHhcCCCCCCCCceEEeCCCCCEEEecccccccccccccCCCCCCCcHHHHHHHHHHcCCcccccccC----------
Q psy9135 947 AEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREET---------- 1016 (1107)
Q Consensus 947 ~~~~~~~~~~~~~~~~~y~Lpdg~~i~l~~~erf~~~E~LF~P~~~~~gL~~~I~~sI~~~~~~d~r~~L---------- 1016 (1107)
.+.... .....+.+|++. .+ ..+ .+.|++|+| ..+|.+.|.+++++|+ .+.+..+
T Consensus 224 ~~~~~~------~~~~~~~~~~~~--~i-~~~--~~~e~i~~~---~~~i~~~i~~~l~~~~-~~~~~~l~~~~IvL~GG 288 (333)
T TIGR00904 224 RKMEVR------GRDLVTGLPRTI--EI-TSV--EVREALQEP---VNQIVEAVKRTLEKTP-PELAADIVERGIVLTGG 288 (333)
T ss_pred cceeec------CccccCCCCeEE--EE-CHH--HHHHHHHHH---HHHHHHHHHHHHHhCC-chhhhhhccCCEEEECc
Confidence 000000 112345677754 44 222 577999987 3478999999999998 7766433
Q ss_pred ----CCCCCCCCccchHHHHHhhhhCCCcccccccceeeEEEEeCCCCcceehhhhHHHhhc
Q psy9135 1017 ----QYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAA 1074 (1107)
Q Consensus 1017 ----~Gf~~~~~~~eRL~~EL~~l~p~~~~~~~~~~~~~~~v~~~~~~~~~~aW~GgSIlas 1074 (1107)
||+ .+||++++.. | +. ...+|..++=.||++++.
T Consensus 289 ss~ipgl------~e~l~~~~~~--~-------------v~---~~~~P~~~va~Ga~~~~~ 326 (333)
T TIGR00904 289 GALLRNL------DKLLSKETGL--P-------------VI---VADDPLLCVAKGTGKALE 326 (333)
T ss_pred ccchhhH------HHHHHHHHCC--C-------------ce---ecCChHHHHHHHHHHHHh
Confidence 777 9999999842 2 11 223678889999999864
No 44
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=99.76 E-value=6.8e-18 Score=193.87 Aligned_cols=272 Identities=13% Similarity=0.132 Sum_probs=197.6
Q ss_pred eEEEecCcceEEEeccCCCCcc-EEEecceeccCCCC-c--------------------cceeecCCHHhhHHHHHHHHH
Q psy9135 738 GVVLDIGSKYTKYGIFGSFQPK-GFIKSQVKDPHTNK-L--------------------RNLYEYKDADDLYGLLIEFIR 795 (1107)
Q Consensus 738 ~vViD~Gs~~iK~G~age~~P~-~i~ps~vg~~~~~~-~--------------------~~~~~~~~~~~~~d~le~i~~ 795 (1107)
.+=||+||.++++=..+. +. ...||+++...... . ... ..++.+.+||.++.+|+
T Consensus 6 ~~giDlGt~~~~i~~~~~--~~~~~~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~~p-i~~G~I~d~d~~~~~l~ 82 (335)
T PRK13929 6 EIGIDLGTANILVYSKNK--GIILNEPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAVRP-MKDGVIADYDMTTDLLK 82 (335)
T ss_pred eEEEEcccccEEEEECCC--cEEecCCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEEec-CCCCccCCHHHHHHHHH
Confidence 488999999999732232 22 12477776543221 0 011 13467789999999999
Q ss_pred HHHHh---ccccCCCCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccC-----CceEEEEEcCCCc
Q psy9135 796 KIFFK---YFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLG-----VNTGLVLDIGYSE 867 (1107)
Q Consensus 796 ~~~~~---~L~~~~~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g-----~~tglVVDiG~~~ 867 (1107)
+++.+ .++..++..+++++.|+..+..+|+.+.+ .||.++++.+++++++++|++++| ..+++|||+|++.
T Consensus 83 ~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~-a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lvvDiG~gt 161 (335)
T PRK13929 83 QIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISD-AVKNCGAKNVHLIEEPVAAAIGADLPVDEPVANVVVDIGGGT 161 (335)
T ss_pred HHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHH-HHHHcCCCeeEeecCHHHHHHhcCCCcCCCceEEEEEeCCCe
Confidence 99974 56666767899999999999999999999 899999999999999999999997 5689999999999
Q ss_pred eEEEEE-EcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhceeeccchHH
Q psy9135 868 ATLLPV-YEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERS 946 (1107)
Q Consensus 868 T~v~PV-~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c~v~~~~~~ 946 (1107)
|++++| ++|....+ ..++| |+++|++|.+.+.++. .+. .+...++++|+++|++..+...
T Consensus 162 t~v~vi~~~~~~~~~---~~~~G-G~~id~~l~~~l~~~~---------~~~------~~~~~AE~iK~~l~~~~~~~~~ 222 (335)
T PRK13929 162 TEVAIISFGGVVSCH---SIRIG-GDQLDEDIVSFVRKKY---------NLL------IGERTAEQVKMEIGYALIEHEP 222 (335)
T ss_pred EEEEEEEeCCEEEec---CcCCH-HHHHHHHHHHHHHHHh---------CcC------cCHHHHHHHHHHHcCCCCCCCC
Confidence 999999 66655443 35799 9999999999997532 111 1234899999999998653211
Q ss_pred HHHHhcCCCCCCCCceEEeCCCCCEEEeccccccc--ccccccCCCCCCCcHHHHHHHHHHcCCcccccccC--------
Q psy9135 947 AEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRET--AFEVLFELDLDMLNIATIILDSLLSVASSDGREET-------- 1016 (1107)
Q Consensus 947 ~~~~~~~~~~~~~~~~~y~Lpdg~~i~l~~~erf~--~~E~LF~P~~~~~gL~~~I~~sI~~~~~~d~r~~L-------- 1016 (1107)
...... .....+.+| ..+.+ +.++|. ++|.+|+ |.++|.++|++|+ .+++..+
T Consensus 223 ~~~~v~------g~~~~~~~p--~~i~i-~~~~~~~~i~~~l~~-------i~~~i~~~L~~~~-~~l~~~~~~~gIvLt 285 (335)
T PRK13929 223 ETMEVR------GRDLVTGLP--KTITL-ESKEIQGAMRESLLH-------ILEAIRATLEDCP-PELSGDIVDRGVILT 285 (335)
T ss_pred ceEEEe------CCccCCCCC--eEEEE-cHHHHHHHHHHHHHH-------HHHHHHHHHHhCC-cccchhhcCCCEEEE
Confidence 000000 001123344 46777 566776 5888874 9999999999998 7776443
Q ss_pred ------CCCCCCCCccchHHHHHhhhhCCCcccccccceeeEEEEeCCCCcceehhhhHHHhh
Q psy9135 1017 ------QYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFA 1073 (1107)
Q Consensus 1017 ------~Gf~~~~~~~eRL~~EL~~l~p~~~~~~~~~~~~~~~v~~~~~~~~~~aW~GgSIla 1073 (1107)
||| .+||++++.. | +++ ..+|..++=+|+..+-
T Consensus 286 GG~s~lpgl------~e~l~~~~~~--~-------------v~~---~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 286 GGGALLNGI------KEWLSEEIVV--P-------------VHV---AANPLESVAIGTGRSL 324 (335)
T ss_pred chhhhhhhH------HHHHHHHHCC--C-------------cee---CCCHHHHHHHHHHHHH
Confidence 777 9999999853 3 111 2367788888988773
No 45
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.59 E-value=5.4e-15 Score=170.32 Aligned_cols=283 Identities=13% Similarity=0.074 Sum_probs=187.2
Q ss_pred EEEecCcceEEEeccCCCCccEEEecceeccCCC-Cc------------c---cee----ecCCHHhhHHHHHHHHHHHH
Q psy9135 739 VVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTN-KL------------R---NLY----EYKDADDLYGLLIEFIRKIF 798 (1107)
Q Consensus 739 vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~-~~------------~---~~~----~~~~~~~~~d~le~i~~~~~ 798 (1107)
+=||+|+.++++-..++. -....||++...... .. + ... ..++.+.+|+.++++|+|++
T Consensus 6 ~gIDlGt~~~~i~~~~~~-~v~~~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~~~pi~~G~i~d~~~~~~~l~~~~ 84 (336)
T PRK13928 6 IGIDLGTANVLVYVKGKG-IVLNEPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVAIRPLRDGVIADYDVTEKMLKYFI 84 (336)
T ss_pred eEEEcccccEEEEECCCC-EEEccCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEEEccCCCCeEecHHHHHHHHHHHH
Confidence 889999999999766442 111235555443211 10 0 111 13477889999999999999
Q ss_pred HhccccCCCCce-EEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCC-----ceEEEEEcCCCceEEEE
Q psy9135 799 FKYFVTSPKDKR-IVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLP 872 (1107)
Q Consensus 799 ~~~L~~~~~~~~-vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~-----~tglVVDiG~~~T~v~P 872 (1107)
.+.....+.++| ++++.|...+ ..+++.++..||..+++.+.+++++++|+|++|. +.++|||+|++.|.+++
T Consensus 85 ~~~~~~~~~~~p~~vitvP~~~~-~~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDiGggttdvsv 163 (336)
T PRK13928 85 NKACGKRFFSKPRIMICIPTGIT-SVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLDISQPSGNMVVDIGGGTTDIAV 163 (336)
T ss_pred HHHhccCCCCCCeEEEEeCCCCC-HHHHHHHHHHHHHcCCCceEecccHHHHHHHcCCcccCCCeEEEEEeCCCeEEEEE
Confidence 443223345666 8888866654 5566777788899999999999999999999987 67999999999999999
Q ss_pred EEcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhceeeccchHHHHHHhc
Q psy9135 873 VYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIAAK 952 (1107)
Q Consensus 873 V~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c~v~~~~~~~~~~~~ 952 (1107)
|.+|..+.+ ...++| |+++|+.|.+.+.++. .. ......++++|+++|++..+....+....
T Consensus 164 v~~g~~~~~--~~~~lG-G~did~~i~~~l~~~~---------~~------~~~~~~ae~lK~~~~~~~~~~~~~~~~v~ 225 (336)
T PRK13928 164 LSLGGIVTS--SSIKVA-GDKFDEAIIRYIRKKY---------KL------LIGERTAEEIKIKIGTAFPGAREEEMEIR 225 (336)
T ss_pred EEeCCEEEe--CCcCCH-HHHHHHHHHHHHHHHh---------ch------hcCHHHHHHHHHHhcccccccCCcEEEEe
Confidence 999987754 367999 9999999999997542 11 12234799999999887543210000000
Q ss_pred CCCCCCCCceEEeCCCCCEEEecccccccccccccCCCCCCCcHHHHHHHHHHcCCcccccccC--------CCCCCCCC
Q psy9135 953 NPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREET--------QYFPFRCW 1024 (1107)
Q Consensus 953 ~~~~~~~~~~~y~Lpdg~~i~l~~~erf~~~E~LF~P~~~~~gL~~~I~~sI~~~~~~d~r~~L--------~Gf~~~~~ 1024 (1107)
.....+.+|+ .+.+ ..++|. |+++.+ ...+.+.|.+++.+++ .+++..+ .|-+..++
T Consensus 226 ------g~~~~~~~~~--~~~i-~~~~~~--eii~~~---~~~i~~~i~~~l~~~~-~~~~~~~i~~~IvL~GG~s~ipg 290 (336)
T PRK13928 226 ------GRDLVTGLPK--TITV-TSEEIR--EALKEP---VSAIVQAVKSVLERTP-PELSADIIDRGIIMTGGGALLHG 290 (336)
T ss_pred ------cccccCCCce--EEEE-CHHHHH--HHHHHH---HHHHHHHHHHHHHhCC-ccccHhhcCCCEEEECcccchhh
Confidence 0001122333 2555 344443 666543 2368888999999998 6655322 22222222
Q ss_pred ccchHHHHHhhhhCCCcccccccceeeEEEEeCCCCcceehhhhHHHhhc
Q psy9135 1025 VNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAA 1074 (1107)
Q Consensus 1025 ~~eRL~~EL~~l~p~~~~~~~~~~~~~~~v~~~~~~~~~~aW~GgSIlas 1074 (1107)
+.++|++++.. | +++ ..+|..++=+||++++.
T Consensus 291 i~e~l~~~~~~--~-------------v~~---~~~P~~ava~Gaa~~~~ 322 (336)
T PRK13928 291 LDKLLAEETKV--P-------------VYI---AEDPISCVALGTGKMLE 322 (336)
T ss_pred HHHHHHHHHCC--C-------------cee---cCCHHHHHHHHHHHHHh
Confidence 29999988853 2 112 23678899999999964
No 46
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.49 E-value=7.1e-13 Score=143.66 Aligned_cols=205 Identities=14% Similarity=0.118 Sum_probs=144.1
Q ss_pred ccceeecCCCCccccccCCC----CCCCeEEEecCCceeEEeeecCcccccccccceeccCCccccceeccCchhhHHHH
Q psy9135 20 KTGVVLDIGSKYTKYGIFGS----FQPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYEYKDADDLYGL 95 (1107)
Q Consensus 20 ~~~vViD~Gs~~tk~G~~~~----~~~~~iViD~GS~~~K~G~age~~P~~i~ps~v~~~~~~~~~~~~~~~~~~~~~~~ 95 (1107)
.+.+-||.|+++|++..-|. .++.+|-++.++.+-++=.-|++.-+ ++||...+..--.--.++.+.+++.
T Consensus 6 s~diGIDLGTanTlV~~k~kgIVl~ePSVVAi~~~~~~~~v~aVG~eAK~-----MlGrTP~ni~aiRPmkdGVIAd~~~ 80 (342)
T COG1077 6 SNDIGIDLGTANTLVYVKGKGIVLNEPSVVAIESEGKTKVVLAVGEEAKQ-----MLGRTPGNIVAIRPMKDGVIADFEV 80 (342)
T ss_pred cccceeeecccceEEEEcCceEEecCceEEEEeecCCCceEEEehHHHHH-----HhccCCCCceEEeecCCcEeecHHH
Confidence 34788999999999974443 45556667775344444334554432 4444432221000112355677888
Q ss_pred HHHHHHHHHhhccccC--CCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC-----ceEEEEE
Q psy9135 96 LIEFIRKIFFKYFVTS--PKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLD 168 (1107)
Q Consensus 96 le~i~~~~~~~~L~~~--~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~-----~tglVVD 168 (1107)
.+.++.|...+..+-. ...-+++++.|.-.+.-.|+.+-|.+ ++-+...+++.++|.+|+.++|. +-.+|||
T Consensus 81 te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~-~~aGa~~V~lieEp~aAAIGaglpi~ep~G~mvvD 159 (342)
T COG1077 81 TELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAA-ESAGAREVYLIEEPMAAAIGAGLPIMEPTGSMVVD 159 (342)
T ss_pred HHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHH-HhccCceEEEeccHHHHHhcCCCcccCCCCCEEEE
Confidence 8888888875444322 23345788888888888787776655 55688899999999999999986 4489999
Q ss_pred eCCCceEEEEeecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccCCCHHHHHHH
Q psy9135 169 IGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDI 248 (1107)
Q Consensus 169 iG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~i 248 (1107)
||..+|.|.-+..|-++.. ....+||+.+++-+.+. +++... -.+.+..+|+|
T Consensus 160 IGgGTTevaVISlggiv~~--~Sirv~GD~~De~Ii~y--------------vr~~~n-----------l~IGe~taE~i 212 (342)
T COG1077 160 IGGGTTEVAVISLGGIVSS--SSVRVGGDKMDEAIIVY--------------VRKKYN-----------LLIGERTAEKI 212 (342)
T ss_pred eCCCceeEEEEEecCEEEE--eeEEEecchhhHHHHHH--------------HHHHhC-----------eeecHHHHHHH
Confidence 9999999999988887765 56678999999999988 555432 23568889999
Q ss_pred HHhceeecc
Q psy9135 249 KVCSCFVTT 257 (1107)
Q Consensus 249 Ke~~c~v~~ 257 (1107)
|.+..++..
T Consensus 213 K~eiG~a~~ 221 (342)
T COG1077 213 KIEIGSAYP 221 (342)
T ss_pred HHHhccccc
Confidence 999988875
No 47
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.47 E-value=6.1e-13 Score=149.95 Aligned_cols=283 Identities=14% Similarity=0.103 Sum_probs=190.1
Q ss_pred ceEEEecCcceEEEeccCCCCccEEEecceeccCCCCc-------------c---cee----ecCCHHhhHHHHHHHHHH
Q psy9135 737 TGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL-------------R---NLY----EYKDADDLYGLLIEFIRK 796 (1107)
Q Consensus 737 ~~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~~~-------------~---~~~----~~~~~~~~~d~le~i~~~ 796 (1107)
.-+=||+||.+|++-..+. .=....||+++.+..... | .+- ..+|.+.|++..+.+++|
T Consensus 2 ~~igIDLGT~~t~i~~~~~-Giv~~epSvVA~~~~~~~i~avG~~A~~m~gktp~~i~~~~Pl~~GvI~D~~~~~~~l~~ 80 (326)
T PF06723_consen 2 KDIGIDLGTSNTRIYVKGK-GIVLNEPSVVAYDKDTGKILAVGDEAKAMLGKTPDNIEVVRPLKDGVIADYEAAEEMLRY 80 (326)
T ss_dssp SEEEEEE-SSEEEEEETTT-EEEEEEES-EEEETTT--EEEESHHHHTTTTS-GTTEEEE-SEETTEESSHHHHHHHHHH
T ss_pred CceEEecCcccEEEEECCC-CEEEecCcEEEEECCCCeEEEEhHHHHHHhhcCCCccEEEccccCCcccCHHHHHHHHHH
Confidence 3578999999999944443 233346888886654321 0 110 124788899999999999
Q ss_pred HHHhcccc-CCCCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCCc-----eEEEEEcCCCceEE
Q psy9135 797 IFFKYFVT-SPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVN-----TGLVLDIGYSEATL 870 (1107)
Q Consensus 797 ~~~~~L~~-~~~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~~-----tglVVDiG~~~T~v 870 (1107)
.+.+..+- ....-.++++.|.-.+...|+.+.+.+- ..++..++++++|+++++|+|.. ..+|||+|++.|.+
T Consensus 81 ~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~-~aGa~~V~li~ep~AaAiGaGl~i~~~~g~miVDIG~GtTdi 159 (326)
T PF06723_consen 81 FLKKALGRRSFFRPRVVICVPSGITEVERRALIDAAR-QAGARKVYLIEEPIAAAIGAGLDIFEPRGSMIVDIGGGTTDI 159 (326)
T ss_dssp HHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHH-HTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-SS-EEE
T ss_pred HHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHH-HcCCCEEEEecchHHHHhcCCCCCCCCCceEEEEECCCeEEE
Confidence 99877764 3356679999999999999999999985 48999999999999999999843 57999999999999
Q ss_pred EEEEcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhceeeccchHHHHHH
Q psy9135 871 LPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIA 950 (1107)
Q Consensus 871 ~PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c~v~~~~~~~~~~ 950 (1107)
.-+..|-++. .+.+++| |+++++.+.+.++++. . ..++...++.+|++++++.........
T Consensus 160 avislggiv~--s~si~~g-G~~~DeaI~~~ir~~y---------~------l~Ig~~tAE~iK~~~g~~~~~~~~~~~- 220 (326)
T PF06723_consen 160 AVISLGGIVA--SRSIRIG-GDDIDEAIIRYIREKY---------N------LLIGERTAEKIKIEIGSASPPEEEESM- 220 (326)
T ss_dssp EEEETTEEEE--EEEES-S-HHHHHHHHHHHHHHHH---------S------EE--HHHHHHHHHHH-BSS--HHHHEE-
T ss_pred EEEECCCEEE--EEEEEec-CcchhHHHHHHHHHhh---------C------cccCHHHHHHHHHhcceeeccCCCceE-
Confidence 9999998875 4778999 9999999999998873 1 235567999999999998865422211
Q ss_pred hcCCCCCCCCceEEeCCCCC--EEEecccccccccccccCCCCCCCcHHHHHHHHHHcCCcccccccC--------CCCC
Q psy9135 951 AKNPDHKYPSGFMYPLKNGK--KIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREET--------QYFP 1020 (1107)
Q Consensus 951 ~~~~~~~~~~~~~y~Lpdg~--~i~l~~~erf~~~E~LF~P~~~~~gL~~~I~~sI~~~~~~d~r~~L--------~Gf~ 1020 (1107)
.-.--.+-+|- .+.++..+-..+.+..++ .|.+.|.+++.++| +++..++ .|-+
T Consensus 221 ---------~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~------~I~~~i~~~Le~~p-Pel~~DI~~~GI~LtGGga 284 (326)
T PF06723_consen 221 ---------EVRGRDLITGLPKSIEITSSEVREAIEPPVD------QIVEAIKEVLEKTP-PELAADILENGIVLTGGGA 284 (326)
T ss_dssp ---------EEEEEETTTTCEEEEEEEHHHHHHHHHHHHH------HHHHHHHHHHHTS--HHHHHHHHHH-EEEESGGG
T ss_pred ---------EEECccccCCCcEEEEEcHHHHHHHHHHHHH------HHHHHHHHHHHhCC-HHHHHHHHHCCEEEEChhh
Confidence 01111223332 355544455555555554 69999999999999 9988776 2323
Q ss_pred CCCCccchHHHHHhhhhCCCcccccccceeeEEEEeCCCCcceehhhhHHHhhc
Q psy9135 1021 FRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAA 1074 (1107)
Q Consensus 1021 ~~~~~~eRL~~EL~~l~p~~~~~~~~~~~~~~~v~~~~~~~~~~aW~GgSIlas 1074 (1107)
++.++.++|++|+. +| +++ ..+|.+++-.|+..+..
T Consensus 285 ~l~Gl~~~i~~~~~--~p-------------V~v---a~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 285 LLRGLDEYISEETG--VP-------------VRV---ADDPLTAVARGAGKLLE 320 (326)
T ss_dssp GSBTHHHHHHHHHS--S--------------EEE----SSTTTHHHHHHHHTTC
T ss_pred hhccHHHHHHHHHC--CC-------------EEE---cCCHHHHHHHHHHHHHh
Confidence 33333999999985 33 222 33788999999988764
No 48
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.29 E-value=9.7e-11 Score=127.96 Aligned_cols=114 Identities=11% Similarity=0.052 Sum_probs=91.1
Q ss_pred chhhHHHHHHHHHHHHHhh---ccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCCceE
Q psy9135 88 DADDLYGLLIEFIRKIFFK---YFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTG 164 (1107)
Q Consensus 88 ~~~~~~~~le~i~~~~~~~---~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~~tg 164 (1107)
+.+.+.+..+.+++++... .++ ..-..++++.|......+|+.+. -.++.-|+.-+.+..++++++.+++....
T Consensus 34 g~I~d~~~~~~~l~~l~~~a~~~~g--~~~~~vvisVP~~~~~~~r~a~~-~a~~~aGl~~~~li~ep~Aaa~~~~~~~~ 110 (239)
T TIGR02529 34 GIVVDFLGAVEIVRRLKDTLEQKLG--IELTHAATAIPPGTIEGDPKVIV-NVIESAGIEVLHVLDEPTAAAAVLQIKNG 110 (239)
T ss_pred CeEEEhHHHHHHHHHHHHHHHHHhC--CCcCcEEEEECCCCCcccHHHHH-HHHHHcCCceEEEeehHHHHHHHhcCCCc
Confidence 4455667777777777632 233 23467999999888888887666 45566799999999999999999888788
Q ss_pred EEEEeCCCceEEEEeecCEecccceEEecccHHHHHHHHHHh
Q psy9135 165 LVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 165 lVVDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l 206 (1107)
+|||+|+++|+++-+.+|.++. .+..++||+++|+.+.+.
T Consensus 111 ~vvDiGggtt~i~i~~~G~i~~--~~~~~~GG~~it~~Ia~~ 150 (239)
T TIGR02529 111 AVVDVGGGTTGISILKKGKVIY--SADEPTGGTHMSLVLAGA 150 (239)
T ss_pred EEEEeCCCcEEEEEEECCeEEE--EEeeecchHHHHHHHHHH
Confidence 9999999999999999998775 467899999999988766
No 49
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.18 E-value=1.3e-09 Score=121.15 Aligned_cols=109 Identities=13% Similarity=0.119 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHh---hccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCCceEEEEEe
Q psy9135 93 YGLLIEFIRKIFF---KYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDI 169 (1107)
Q Consensus 93 ~~~le~i~~~~~~---~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~~tglVVDi 169 (1107)
++...+.+++... +.++.+ -..++++.|......+|..+. -..+.-|+.-..+..++.++..+++...++|||+
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~--i~~v~~~vp~~~~~~~~~~~~-~~~~~aGl~~~~ii~e~~A~a~~~~~~~~~vvDI 142 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRE--LTHAATAIPPGTSEGDPRAII-NVVESAGLEVTHVLDEPTAAAAVLGIDNGAVVDI 142 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC--cCeEEEEeCCCCCchhHHHHH-HHHHHcCCceEEEechHHHHHHHhCCCCcEEEEe
Confidence 4555555555442 233443 345667888877666677665 7778889999989999999988887777899999
Q ss_pred CCCceEEEEeecCEecccceEEecccHHHHHHHHHHh
Q psy9135 170 GYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 170 G~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l 206 (1107)
|+++|+++-+.+|.+... ...++||+++|+.+.+.
T Consensus 143 Gggtt~i~v~~~g~~~~~--~~~~~GG~~it~~Ia~~ 177 (267)
T PRK15080 143 GGGTTGISILKDGKVVYS--ADEPTGGTHMSLVLAGA 177 (267)
T ss_pred CCCcEEEEEEECCeEEEE--ecccCchHHHHHHHHHH
Confidence 999999999999988754 57899999999998776
No 50
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=98.67 E-value=1.9e-06 Score=107.73 Aligned_cols=92 Identities=18% Similarity=0.104 Sum_probs=74.9
Q ss_pred CCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC-----ceEEEEEeCCCceEEEEee--cCEecc
Q psy9135 114 DKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVY--EGVPVL 186 (1107)
Q Consensus 114 ~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~-----~tglVVDiG~~~T~V~PV~--dG~vl~ 186 (1107)
-..+++|.|.+.+..+|+.+. -..+.-|++-+.++.+|.+|++++|. .+-+|+|+|+++++|+-+. +|...-
T Consensus 174 v~~~VITVPa~f~~~qR~a~~-~Aa~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v 252 (663)
T PTZ00400 174 VKQAVITVPAYFNDSQRQATK-DAGKIAGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEV 252 (663)
T ss_pred CceEEEEECCCCCHHHHHHHH-HHHHHcCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEE
Confidence 457999999999999998775 46677899999999999999998875 4789999999999998664 554432
Q ss_pred c-ceEEecccHHHHHHHHHHh
Q psy9135 187 C-AWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 187 ~-~~~~~~iGG~~lt~~L~~l 206 (1107)
. .....++||.++|+.|.+.
T Consensus 253 ~a~~gd~~LGG~d~D~~l~~~ 273 (663)
T PTZ00400 253 KATNGNTSLGGEDFDQRILNY 273 (663)
T ss_pred EecccCCCcCHHHHHHHHHHH
Confidence 2 2234689999999999887
No 51
>CHL00094 dnaK heat shock protein 70
Probab=98.66 E-value=2.5e-06 Score=106.27 Aligned_cols=91 Identities=20% Similarity=0.156 Sum_probs=73.0
Q ss_pred CeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC-----ceEEEEEeCCCceEEEEeecCEec---c
Q psy9135 115 KRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVYEGVPV---L 186 (1107)
Q Consensus 115 ~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~-----~tglVVDiG~~~T~V~PV~dG~vl---~ 186 (1107)
..++++.|......+|+.+.+. .+.-|+.-+.++++|.+|++++|. .+.+|+|+|+++++|+-+.-+... .
T Consensus 136 ~~~VItVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vl 214 (621)
T CHL00094 136 TQAVITVPAYFNDSQRQATKDA-GKIAGLEVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVL 214 (621)
T ss_pred CeEEEEECCCCCHHHHHHHHHH-HHHcCCceEEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEEEEcCCEEEEE
Confidence 5688899999999999887665 577899999999999999998764 468999999999999877544211 1
Q ss_pred cceEEecccHHHHHHHHHHh
Q psy9135 187 CAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 187 ~~~~~~~iGG~~lt~~L~~l 206 (1107)
......++||+++|+.|.+.
T Consensus 215 a~~gd~~lGG~d~D~~l~~~ 234 (621)
T CHL00094 215 STSGDTHLGGDDFDKKIVNW 234 (621)
T ss_pred EEecCCCcChHHHHHHHHHH
Confidence 12234689999999999987
No 52
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=98.65 E-value=2.3e-06 Score=106.92 Aligned_cols=92 Identities=20% Similarity=0.122 Sum_probs=72.2
Q ss_pred CCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC-----ceEEEEEeCCCceEEEEeecC--Ee-c
Q psy9135 114 DKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVYEG--VP-V 185 (1107)
Q Consensus 114 ~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~-----~tglVVDiG~~~T~V~PV~dG--~v-l 185 (1107)
-..+++|.|.+.+..+|+.+. -..+.-|++-+.++++|.+|++++|. .+.+|+|+|++++.|+-+.-+ .. +
T Consensus 133 v~~~VItVPa~f~~~qR~a~~-~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v 211 (627)
T PRK00290 133 VTEAVITVPAYFNDAQRQATK-DAGKIAGLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEV 211 (627)
T ss_pred CceEEEEECCCCCHHHHHHHH-HHHHHcCCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEE
Confidence 356899999999999998775 55577899999999999999888753 579999999999998765443 21 1
Q ss_pred ccceEEecccHHHHHHHHHHh
Q psy9135 186 LCAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 186 ~~~~~~~~iGG~~lt~~L~~l 206 (1107)
.......++||.++++.|.+.
T Consensus 212 la~~gd~~lGG~d~D~~l~~~ 232 (627)
T PRK00290 212 LSTNGDTHLGGDDFDQRIIDY 232 (627)
T ss_pred EEecCCCCcChHHHHHHHHHH
Confidence 112223679999999999887
No 53
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=98.63 E-value=2.5e-06 Score=106.12 Aligned_cols=91 Identities=19% Similarity=0.154 Sum_probs=71.4
Q ss_pred CeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC------ceEEEEEeCCCceEEEEee--cCEec-
Q psy9135 115 KRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV------NTGLVLDIGYSEATLLPVY--EGVPV- 185 (1107)
Q Consensus 115 ~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~------~tglVVDiG~~~T~V~PV~--dG~vl- 185 (1107)
..++++.|...+..+|+.+.+ ..+.-|++-+.++++|.+|++++|. .+-+|+|+|+++++|+-+. +|..-
T Consensus 131 ~~~VItVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v 209 (595)
T TIGR02350 131 TEAVITVPAYFNDAQRQATKD-AGKIAGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEV 209 (595)
T ss_pred CeEEEEECCCCCHHHHHHHHH-HHHHcCCceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEE
Confidence 568999999999999998765 5667899999999999999887653 5689999999999987654 33221
Q ss_pred ccceEEecccHHHHHHHHHHh
Q psy9135 186 LCAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 186 ~~~~~~~~iGG~~lt~~L~~l 206 (1107)
.......++||.++|+.|.+.
T Consensus 210 ~~~~gd~~lGG~d~D~~l~~~ 230 (595)
T TIGR02350 210 LSTAGDTHLGGDDFDQRIIDW 230 (595)
T ss_pred EEecCCcccCchhHHHHHHHH
Confidence 111223579999999999888
No 54
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=98.62 E-value=3.2e-06 Score=104.79 Aligned_cols=92 Identities=15% Similarity=0.120 Sum_probs=73.2
Q ss_pred CCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC-----ceEEEEEeCCCceEEEEee--cCEec-
Q psy9135 114 DKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVY--EGVPV- 185 (1107)
Q Consensus 114 ~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~-----~tglVVDiG~~~T~V~PV~--dG~vl- 185 (1107)
-..+++|.|...+..+|+.+.+. .+..|+.-+.++++|.+|++++|. .+-+|+|+|+++++|+-+. +|..-
T Consensus 129 v~~~VItVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~~v 207 (599)
T TIGR01991 129 LVGAVITVPAYFDDAQRQATKDA-ARLAGLNVLRLLNEPTAAAVAYGLDKASEGIYAVYDLGGGTFDVSILKLTKGVFEV 207 (599)
T ss_pred cceEEEEECCCCCHHHHHHHHHH-HHHcCCCceEEecCHHHHHHHHhhccCCCCEEEEEEcCCCeEEEEEEEEcCCeEEE
Confidence 35799999999999999987655 788999999999999999887753 5689999999999988664 44321
Q ss_pred ccceEEecccHHHHHHHHHHh
Q psy9135 186 LCAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 186 ~~~~~~~~iGG~~lt~~L~~l 206 (1107)
........+||.++|+.|.+.
T Consensus 208 la~~gd~~lGG~d~D~~l~~~ 228 (599)
T TIGR01991 208 LATGGDSALGGDDFDHALAKW 228 (599)
T ss_pred EEEcCCCCCCHHHHHHHHHHH
Confidence 111223589999999999998
No 55
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=98.60 E-value=1.6e-06 Score=106.78 Aligned_cols=92 Identities=17% Similarity=0.152 Sum_probs=72.6
Q ss_pred CCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC-----ceEEEEEeCCCceEEEEee--cCEecc
Q psy9135 114 DKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVY--EGVPVL 186 (1107)
Q Consensus 114 ~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~-----~tglVVDiG~~~T~V~PV~--dG~vl~ 186 (1107)
-..+++|.|.+.+..+|+.+-+. .+.-|+.-+.++++|.+|++++|. .+-+|+|+|+++++|+-+. +|..--
T Consensus 141 v~~aVITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V 219 (595)
T PRK01433 141 ITKAVITVPAHFNDAARGEVMLA-AKIAGFEVLRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQV 219 (595)
T ss_pred cceEEEEECCCCCHHHHHHHHHH-HHHcCCCEEEEecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEEEEeCCeEEE
Confidence 35799999999999998877654 778899999999999999998864 3579999999999987663 553221
Q ss_pred -cceEEecccHHHHHHHHHHh
Q psy9135 187 -CAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 187 -~~~~~~~iGG~~lt~~L~~l 206 (1107)
...-...+||.+++..|.+.
T Consensus 220 ~at~gd~~lGG~d~D~~l~~~ 240 (595)
T PRK01433 220 IATNGDNMLGGNDIDVVITQY 240 (595)
T ss_pred EEEcCCcccChHHHHHHHHHH
Confidence 11123479999999999988
No 56
>PLN03184 chloroplast Hsp70; Provisional
Probab=98.59 E-value=5.5e-06 Score=103.80 Aligned_cols=110 Identities=20% Similarity=0.191 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHh---hccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC-----ceEE
Q psy9135 94 GLLIEFIRKIFF---KYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGL 165 (1107)
Q Consensus 94 ~~le~i~~~~~~---~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~-----~tgl 165 (1107)
+....+++++.. +.++. .-..+++|.|.+.+..+|+.+.+ ..+.-|+.-+.++++|.+|++++|. .+-+
T Consensus 151 ei~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EPtAAAlayg~~~~~~~~vl 227 (673)
T PLN03184 151 EISAQVLRKLVDDASKFLND--KVTKAVITVPAYFNDSQRTATKD-AGRIAGLEVLRIINEPTAASLAYGFEKKSNETIL 227 (673)
T ss_pred HHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHHHHHHH-HHHHCCCCeEEEeCcHHHHHHHhhcccCCCCEEE
Confidence 444455555542 22332 23579999999999999987654 6678899999999999999988764 4789
Q ss_pred EEEeCCCceEEEEeecC--Ee-cccceEEecccHHHHHHHHHHh
Q psy9135 166 VLDIGYSEATLLPVYEG--VP-VLCAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 166 VVDiG~~~T~V~PV~dG--~v-l~~~~~~~~iGG~~lt~~L~~l 206 (1107)
|+|+|+++++|+-+.-+ .. +....-..++||.++|+.|.+.
T Consensus 228 V~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~~ 271 (673)
T PLN03184 228 VFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDW 271 (673)
T ss_pred EEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHHH
Confidence 99999999998766433 21 1111223689999999999988
No 57
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=98.55 E-value=4.2e-06 Score=104.00 Aligned_cols=92 Identities=15% Similarity=0.097 Sum_probs=72.6
Q ss_pred CCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC-----ceEEEEEeCCCceEEEEee--cCEec-
Q psy9135 114 DKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVY--EGVPV- 185 (1107)
Q Consensus 114 ~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~-----~tglVVDiG~~~T~V~PV~--dG~vl- 185 (1107)
-..+++|.|.+.+..+|+.+. -..+..|++-+.++++|.+|++++|. .+-+|+|+|+++++|+.+. +|..-
T Consensus 149 v~~~VITVPa~f~~~qR~a~~-~Aa~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~~~~~~~ev 227 (616)
T PRK05183 149 LDGAVITVPAYFDDAQRQATK-DAARLAGLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSKGVFEV 227 (616)
T ss_pred cceEEEEECCCCCHHHHHHHH-HHHHHcCCCeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEeeCCEEEE
Confidence 357999999999999998774 55788999999999999999887653 4579999999999987664 34321
Q ss_pred ccceEEecccHHHHHHHHHHh
Q psy9135 186 LCAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 186 ~~~~~~~~iGG~~lt~~L~~l 206 (1107)
........+||.++++.|.+.
T Consensus 228 lat~gd~~lGG~d~D~~l~~~ 248 (616)
T PRK05183 228 LATGGDSALGGDDFDHLLADW 248 (616)
T ss_pred EEecCCCCcCHHHHHHHHHHH
Confidence 112223579999999999988
No 58
>PRK13411 molecular chaperone DnaK; Provisional
Probab=98.51 E-value=8.9e-06 Score=101.79 Aligned_cols=92 Identities=15% Similarity=0.095 Sum_probs=72.0
Q ss_pred CCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC------ceEEEEEeCCCceEEEEee--cCEec
Q psy9135 114 DKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV------NTGLVLDIGYSEATLLPVY--EGVPV 185 (1107)
Q Consensus 114 ~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~------~tglVVDiG~~~T~V~PV~--dG~vl 185 (1107)
-..+++|.|.+.+..+|+.+.+ ..+.-|+.-+.++++|.+|++++|. .+-+|+|+|+++++|+-+. +|..-
T Consensus 133 v~~~VITVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~ 211 (653)
T PRK13411 133 VTQAVITVPAYFTDAQRQATKD-AGTIAGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFE 211 (653)
T ss_pred cceEEEEECCCCCcHHHHHHHH-HHHHcCCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEE
Confidence 3569999999999999998765 5677899999999999999988764 3589999999999987543 33221
Q ss_pred -ccceEEecccHHHHHHHHHHh
Q psy9135 186 -LCAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 186 -~~~~~~~~iGG~~lt~~L~~l 206 (1107)
........+||.++++.|.+.
T Consensus 212 V~at~gd~~LGG~dfD~~l~~~ 233 (653)
T PRK13411 212 VKATAGNNHLGGDDFDNCIVDW 233 (653)
T ss_pred EEEEecCCCcCHHHHHHHHHHH
Confidence 111223579999999999887
No 59
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=98.51 E-value=2.5e-06 Score=99.99 Aligned_cols=97 Identities=18% Similarity=0.115 Sum_probs=77.2
Q ss_pred cHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC-----ceEEEEEeCCCceEEEEeecCEecccceEEecccHHHHH
Q psy9135 126 PTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVE 200 (1107)
Q Consensus 126 ~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~-----~tglVVDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt 200 (1107)
++...+.+.+ +++..|+.-+.+..+|+++++++.. ...+|||+|+++|+++.+.+|.+.. .+.+++||+++|
T Consensus 156 ~~~~v~~~~~-~~~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~~--~~~i~~GG~~it 232 (371)
T TIGR01174 156 SSTILRNLVK-CVERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIRY--TKVIPIGGNHIT 232 (371)
T ss_pred EHHHHHHHHH-HHHHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEEE--EeeecchHHHHH
Confidence 4555555554 5678899999999999999887642 3579999999999999999998765 477999999999
Q ss_pred HHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccCCCHHHHHHHHHhceeec
Q psy9135 201 AHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT 256 (1107)
Q Consensus 201 ~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~iKe~~c~v~ 256 (1107)
+.+.+. + ..+...+|++|.+++...
T Consensus 233 ~~i~~~--------------l-----------------~~~~~~AE~lK~~~~~~~ 257 (371)
T TIGR01174 233 KDIAKA--------------L-----------------RTPLEEAERIKIKYGCAS 257 (371)
T ss_pred HHHHHH--------------h-----------------CCCHHHHHHHHHHeeEec
Confidence 988765 2 135788999999998764
No 60
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=98.49 E-value=2.2e-06 Score=101.85 Aligned_cols=77 Identities=16% Similarity=0.063 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC-----ceEEEEEeCCCceEEEEeecCEecccceEEecccHHHHHH
Q psy9135 127 TVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEA 201 (1107)
Q Consensus 127 ~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~-----~tglVVDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~ 201 (1107)
+...+.+.+ .++.-|+.-..++.+|+++++++.. ...+|||+|+++|+++-+.+|.+.. ...+++||+++|+
T Consensus 165 ~~~~~~~~~-a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~~--~~~i~~GG~~it~ 241 (420)
T PRK09472 165 NDMAKNIVK-AVERCGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALRH--TKVIPYAGNVVTS 241 (420)
T ss_pred hHHHHHHHH-HHHHcCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEEE--EeeeechHHHHHH
Confidence 344445554 6688999999999999999998643 3589999999999999999998874 4889999999999
Q ss_pred HHHHh
Q psy9135 202 HIRRG 206 (1107)
Q Consensus 202 ~L~~l 206 (1107)
.+...
T Consensus 242 dIa~~ 246 (420)
T PRK09472 242 DIAYA 246 (420)
T ss_pred HHHHH
Confidence 88766
No 61
>PRK13410 molecular chaperone DnaK; Provisional
Probab=98.49 E-value=1.3e-05 Score=100.30 Aligned_cols=91 Identities=16% Similarity=0.107 Sum_probs=72.2
Q ss_pred CeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC-----ceEEEEEeCCCceEEEEee--cCEec-c
Q psy9135 115 KRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVY--EGVPV-L 186 (1107)
Q Consensus 115 ~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~-----~tglVVDiG~~~T~V~PV~--dG~vl-~ 186 (1107)
..+++|.|.+.+..+|+.+.+. .+.-|+.-+.++++|.+|++++|. .+-+|+|+|+++++|+-+. +|..- .
T Consensus 136 ~~~VITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~ 214 (668)
T PRK13410 136 TGAVITVPAYFNDSQRQATRDA-GRIAGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVK 214 (668)
T ss_pred ceEEEEECCCCCHHHHHHHHHH-HHHcCCCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEE
Confidence 4699999999999999876554 578899999999999999988764 5689999999999987654 44321 1
Q ss_pred cceEEecccHHHHHHHHHHh
Q psy9135 187 CAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 187 ~~~~~~~iGG~~lt~~L~~l 206 (1107)
.+....++||.++++.|.+.
T Consensus 215 at~gd~~lGG~dfD~~l~~~ 234 (668)
T PRK13410 215 ATSGDTQLGGNDFDKRIVDW 234 (668)
T ss_pred EeecCCCCChhHHHHHHHHH
Confidence 12223579999999999887
No 62
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=98.48 E-value=1.8e-05 Score=99.15 Aligned_cols=92 Identities=16% Similarity=0.118 Sum_probs=72.9
Q ss_pred CCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC-------ceEEEEEeCCCceEEEEee--cCEe
Q psy9135 114 DKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-------NTGLVLDIGYSEATLLPVY--EGVP 184 (1107)
Q Consensus 114 ~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~-------~tglVVDiG~~~T~V~PV~--dG~v 184 (1107)
-..+++|.|.+.+..+|+.+. -..+..|+.-+.++++|.+|++++|. .+.+|+|+|+++++|+-+. +|..
T Consensus 140 v~~~VItVPa~f~~~qR~a~~-~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~ 218 (653)
T PTZ00009 140 VKDAVVTVPAYFNDSQRQATK-DAGTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIF 218 (653)
T ss_pred cceeEEEeCCCCCHHHHHHHH-HHHHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeE
Confidence 357999999999999888766 46778899999999999999987753 4789999999999987654 5543
Q ss_pred cccc-eEEecccHHHHHHHHHHh
Q psy9135 185 VLCA-WKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 185 l~~~-~~~~~iGG~~lt~~L~~l 206 (1107)
-..+ .-..++||+++|..|.+.
T Consensus 219 ~v~a~~gd~~lGG~d~D~~l~~~ 241 (653)
T PTZ00009 219 EVKATAGDTHLGGEDFDNRLVEF 241 (653)
T ss_pred EEEEecCCCCCChHHHHHHHHHH
Confidence 2221 223579999999999988
No 63
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=98.47 E-value=9.9e-06 Score=100.82 Aligned_cols=92 Identities=16% Similarity=0.058 Sum_probs=73.8
Q ss_pred CCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC-----ceEEEEEeCCCceEEEEee--cCEecc
Q psy9135 114 DKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVY--EGVPVL 186 (1107)
Q Consensus 114 ~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~-----~tglVVDiG~~~T~V~PV~--dG~vl~ 186 (1107)
-..+++|.|.+....+|+.+. -..+.-|+.-+.++++|.+|++++|. .+-+|+|+|+++++|+-+. +|..--
T Consensus 160 v~~aVITVPayF~~~qR~at~-~Aa~~AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V 238 (657)
T PTZ00186 160 VSNAVVTCPAYFNDAQRQATK-DAGTIAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEV 238 (657)
T ss_pred cceEEEEECCCCChHHHHHHH-HHHHHcCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEE
Confidence 356899999999999888765 46677899999999999999988764 4689999999999988765 665432
Q ss_pred cc-eEEecccHHHHHHHHHHh
Q psy9135 187 CA-WKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 187 ~~-~~~~~iGG~~lt~~L~~l 206 (1107)
.+ .-..++||.++|+.|.+.
T Consensus 239 ~at~Gd~~LGG~DfD~~l~~~ 259 (657)
T PTZ00186 239 KATNGDTHLGGEDFDLALSDY 259 (657)
T ss_pred EEecCCCCCCchhHHHHHHHH
Confidence 22 234689999999999887
No 64
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=98.43 E-value=5e-06 Score=91.13 Aligned_cols=246 Identities=15% Similarity=0.117 Sum_probs=164.2
Q ss_pred ceEEEecCcceEEEeccCCCCccEEEecceeccCCCCc----------ccee------------ecCCHHhhHHHHHHHH
Q psy9135 737 TGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL----------RNLY------------EYKDADDLYGLLIEFI 794 (1107)
Q Consensus 737 ~~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~~~----------~~~~------------~~~~~~~~~d~le~i~ 794 (1107)
..|=||+|+.+|++=.-|. .=-...||+++....++. |..+ -.++.+.+++..+.++
T Consensus 7 ~diGIDLGTanTlV~~k~k-gIVl~ePSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni~aiRPmkdGVIAd~~~te~ml 85 (342)
T COG1077 7 NDIGIDLGTANTLVYVKGK-GIVLNEPSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFEVTELML 85 (342)
T ss_pred ccceeeecccceEEEEcCc-eEEecCceEEEEeecCCCceEEEehHHHHHHhccCCCCceEEeecCCcEeecHHHHHHHH
Confidence 4789999999999854432 111123666665442111 1100 1347778899999999
Q ss_pred HHHHHhccccC--CCCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCC----ce-EEEEEcCCCc
Q psy9135 795 RKIFFKYFVTS--PKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV----NT-GLVLDIGYSE 867 (1107)
Q Consensus 795 ~~~~~~~L~~~--~~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~----~t-glVVDiG~~~ 867 (1107)
+|...+..+-. +..-+++++.|.-.+...|+.+-|-+-. -+...+++++.|.+|+.++|. .+ ..|||||.+.
T Consensus 86 ~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~~~-aGa~~V~lieEp~aAAIGaglpi~ep~G~mvvDIGgGT 164 (342)
T COG1077 86 KYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAAES-AGAREVYLIEEPMAAAIGAGLPIMEPTGSMVVDIGGGT 164 (342)
T ss_pred HHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHHHh-ccCceEEEeccHHHHHhcCCCcccCCCCCEEEEeCCCc
Confidence 98886544322 2444589999999999999999888854 688899999999999999985 34 8999999999
Q ss_pred eEEEEEEcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhceeeccchHHH
Q psy9135 868 ATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSA 947 (1107)
Q Consensus 868 T~v~PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c~v~~~~~~~ 947 (1107)
|.|.-+..|-.... +...+| |+.+++-+-++++++. .+ -+-+..+++||.+.+++......+
T Consensus 165 TevaVISlggiv~~--~Sirv~-GD~~De~Ii~yvr~~~---------nl------~IGe~taE~iK~eiG~a~~~~~~~ 226 (342)
T COG1077 165 TEVAVISLGGIVSS--SSVRVG-GDKMDEAIIVYVRKKY---------NL------LIGERTAEKIKIEIGSAYPEEEDE 226 (342)
T ss_pred eeEEEEEecCEEEE--eeEEEe-cchhhHHHHHHHHHHh---------Ce------eecHHHHHHHHHHhcccccccCCc
Confidence 99988877766633 456788 9999999999998763 11 233457999999999988653221
Q ss_pred HHHhcCCCCCCCCceEEeCCCCCEEEecccc-cccccccccCCCCCCCcHHHHHHHHHHcCCcccccccC
Q psy9135 948 EIAAKNPDHKYPSGFMYPLKNGKKIPVSGHI-RETAFEVLFELDLDMLNIATIILDSLLSVASSDGREET 1016 (1107)
Q Consensus 948 ~~~~~~~~~~~~~~~~y~Lpdg~~i~l~~~e-rf~~~E~LF~P~~~~~gL~~~I~~sI~~~~~~d~r~~L 1016 (1107)
...-.-. -.+...-+| .++.+.++| +...-|.+ ..|.++|...+.+|| .++-.+.
T Consensus 227 ~~~~eV~----Grdl~~GlP--k~i~i~s~ev~eal~~~v-------~~Iveair~~Le~tp-PeL~~DI 282 (342)
T COG1077 227 ELEMEVR----GRDLVTGLP--KTITINSEEIAEALEEPL-------NGIVEAIRLVLEKTP-PELAADI 282 (342)
T ss_pred cceeeEE----eeecccCCC--eeEEEcHHHHHHHHHHHH-------HHHHHHHHHHHhhCC-chhcccH
Confidence 1000000 001111223 234443222 22333333 368899999999999 7776655
No 65
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=98.35 E-value=6.2e-06 Score=90.32 Aligned_cols=148 Identities=12% Similarity=0.055 Sum_probs=108.6
Q ss_pred EecCcceEEEeccC-CCCccEEEecceeccCCCCccceeecCCHHhhHHHHHHHHHHHHHhc-cccCCCCceEEEEeccC
Q psy9135 741 LDIGSKYTKYGIFG-SFQPKGFIKSQVKDPHTNKLRNLYEYKDADDLYGLLIEFIRKIFFKY-FVTSPKDKRIVVVESVL 818 (1107)
Q Consensus 741 iD~Gs~~iK~G~ag-e~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~~~d~le~i~~~~~~~~-L~~~~~~~~vll~e~~~ 818 (1107)
||+||.++|+=-.. ...+-.+.+. |. --..++.+.|.+..+.+++++.... -....+-..++++.|..
T Consensus 2 ~dig~~~ik~v~~~~~~~~~~~~~~----~~------~~~~~g~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~ 71 (239)
T TIGR02529 2 VDLGTANIVIVVLDEDGQPVAGVMQ----FA------DVVRDGIVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPG 71 (239)
T ss_pred CCcccceEEEEEEecCCCEEEEEec----cc------ccccCCeEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCC
Confidence 69999999975432 2222111111 10 0133578888999999999888421 11222345799999998
Q ss_pred CchHHHHHHHHHHhcccCcceeeecccchhhhcccCCceEEEEEcCCCceEEEEEEcCEeeccceEEEeccchHHHHHHH
Q psy9135 819 TPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHI 898 (1107)
Q Consensus 819 ~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~G~G~~lt~~L 898 (1107)
.+..+|+.+.+.+ +.-++.-+.+..+++++..+++....+|||+|++.|.++-+.+|.++. .+..++| |+++|+.+
T Consensus 72 ~~~~~r~a~~~a~-~~aGl~~~~li~ep~Aaa~~~~~~~~~vvDiGggtt~i~i~~~G~i~~--~~~~~~G-G~~it~~I 147 (239)
T TIGR02529 72 TIEGDPKVIVNVI-ESAGIEVLHVLDEPTAAAAVLQIKNGAVVDVGGGTTGISILKKGKVIY--SADEPTG-GTHMSLVL 147 (239)
T ss_pred CCcccHHHHHHHH-HHcCCceEEEeehHHHHHHHhcCCCcEEEEeCCCcEEEEEEECCeEEE--EEeeecc-hHHHHHHH
Confidence 8888888777655 557999999999999999988877789999999999999889998774 4677899 99999887
Q ss_pred HHHH
Q psy9135 899 RSLL 902 (1107)
Q Consensus 899 ~~lL 902 (1107)
.+.+
T Consensus 148 a~~~ 151 (239)
T TIGR02529 148 AGAY 151 (239)
T ss_pred HHHh
Confidence 6554
No 66
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=98.34 E-value=1.5e-05 Score=99.59 Aligned_cols=91 Identities=18% Similarity=0.158 Sum_probs=68.4
Q ss_pred CeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC------ceEEEEEeCCCceEEEEee--cCEecc
Q psy9135 115 KRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV------NTGLVLDIGYSEATLLPVY--EGVPVL 186 (1107)
Q Consensus 115 ~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~------~tglVVDiG~~~T~V~PV~--dG~vl~ 186 (1107)
..++++.|..++..+|+.+. -..+.-|++-+.++++|.+|+++++. .+-+|+|+|++++.|+-+. +|..-.
T Consensus 136 ~~~vitVPa~~~~~qr~~~~-~Aa~~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v 214 (602)
T PF00012_consen 136 TDVVITVPAYFTDEQRQALR-DAAELAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEV 214 (602)
T ss_dssp EEEEEEE-TT--HHHHHHHH-HHHHHTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEE
T ss_pred ccceeeechhhhhhhhhccc-ccccccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccc
Confidence 46999999999999988666 45567899999999999998876642 5889999999999887664 454322
Q ss_pred -cceEEecccHHHHHHHHHHh
Q psy9135 187 -CAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 187 -~~~~~~~iGG~~lt~~L~~l 206 (1107)
.......+||+++++.|.+.
T Consensus 215 ~~~~~~~~lGG~~~D~~l~~~ 235 (602)
T PF00012_consen 215 LATAGDNNLGGRDFDEALAEY 235 (602)
T ss_dssp EEEEEETTCSHHHHHHHHHHH
T ss_pred cccccccccccceecceeecc
Confidence 22344789999999999998
No 67
>PRK11678 putative chaperone; Provisional
Probab=98.33 E-value=4.8e-05 Score=90.72 Aligned_cols=90 Identities=13% Similarity=0.058 Sum_probs=67.6
Q ss_pred CCeEEEEecCCCc-----HHHHHHH--HHHHHhhcCcceEEEecchhhhhccCCC-----ceEEEEEeCCCceEEEEeec
Q psy9135 114 DKRIVVVESVLTP-----TVWRNTL--AKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVYE 181 (1107)
Q Consensus 114 ~~~vllte~~~~~-----~~~re~l--~eilFE~~~vpsv~~~~~~lls~y~~g~-----~tglVVDiG~~~T~V~PV~d 181 (1107)
-..+|++-|.... ..+|+.. ..-..+.-|++.+.++++|.+|++++|. .+-+|+|+|+++++++-|-=
T Consensus 149 v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~D~GGGT~D~Svv~~ 228 (450)
T PRK11678 149 ITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSMLLM 228 (450)
T ss_pred CCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccCCCCeEEEEEeCCCeEEEEEEEe
Confidence 3568999998765 5555432 4567788999999999999999998873 57899999999998876642
Q ss_pred C-----------EecccceEEecccHHHHHHHHHH
Q psy9135 182 G-----------VPVLCAWKDLSLGGQSVEAHIRR 205 (1107)
Q Consensus 182 G-----------~vl~~~~~~~~iGG~~lt~~L~~ 205 (1107)
+ .++.++- ..+||+++|..|..
T Consensus 229 ~~~~~~~~~r~~~vla~~G--~~lGG~DfD~~L~~ 261 (450)
T PRK11678 229 GPSWRGRADRSASLLGHSG--QRIGGNDLDIALAF 261 (450)
T ss_pred cCcccccCCcceeEEecCC--CCCChHHHHHHHHH
Confidence 1 1222221 36999999999963
No 68
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=0.00029 Score=86.66 Aligned_cols=93 Identities=20% Similarity=0.163 Sum_probs=75.1
Q ss_pred CCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC-----ceEEEEEeCCCceEEEEeec--CE-e
Q psy9135 113 KDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVYE--GV-P 184 (1107)
Q Consensus 113 ~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~-----~tglVVDiG~~~T~V~PV~d--G~-v 184 (1107)
.-..++++.|.+....+|+.+ .-..+..|++-+.++++|.+|+|++|. .+-+|+|+|++++.|+-|-= |. -
T Consensus 119 ~v~~~VItVPayF~d~qR~at-~~A~~iaGl~vlrlinEPtAAAlayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~e 197 (579)
T COG0443 119 KVTDAVITVPAYFNDAQRQAT-KDAARIAGLNVLRLINEPTAAALAYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFE 197 (579)
T ss_pred CcceEEEEeCCCCCHHHHHHH-HHHHHHcCCCeEEEecchHHHHHHhHhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEE
Confidence 456799999999999987754 466778899999999999999999875 57999999999999886654 32 1
Q ss_pred cccceEEecccHHHHHHHHHHh
Q psy9135 185 VLCAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 185 l~~~~~~~~iGG~~lt~~L~~l 206 (1107)
+........+||++++..|...
T Consensus 198 v~at~gd~~LGGddfD~~l~~~ 219 (579)
T COG0443 198 VLATGGDNHLGGDDFDNALIDY 219 (579)
T ss_pred EeecCCCcccCchhHHHHHHHH
Confidence 2233445689999999999888
No 69
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=98.10 E-value=7.5e-05 Score=83.28 Aligned_cols=153 Identities=11% Similarity=0.069 Sum_probs=106.9
Q ss_pred ccceEEEecCcceEEEeccCCCCccEEEecceeccCCCCccceeecCCHHhhHHHHHHHHHHHHH---hccccCCCCceE
Q psy9135 735 LKTGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYEYKDADDLYGLLIEFIRKIFF---KYFVTSPKDKRI 811 (1107)
Q Consensus 735 ~~~~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~~~d~le~i~~~~~~---~~L~~~~~~~~v 811 (1107)
.+-.++||+||..+|+=.+ +..+. .+ .....++. . ...+.+.+++.....++++.. +.++.+ -..+
T Consensus 23 ~~~~~~iDiGSssi~~vv~-~~~~~-~~-~~~~~~~~-----~-vr~G~i~di~~a~~~i~~~~~~ae~~~g~~--i~~v 91 (267)
T PRK15080 23 SPLKVGVDLGTANIVLAVL-DEDGQ-PV-AGALEWAD-----V-VRDGIVVDFIGAVTIVRRLKATLEEKLGRE--LTHA 91 (267)
T ss_pred CCEEEEEEccCceEEEEEE-cCCCC-EE-EEEecccc-----c-cCCCEEeeHHHHHHHHHHHHHHHHHHhCCC--cCeE
Confidence 3456899999999997654 33343 11 11111111 1 123445667777777776663 233443 3456
Q ss_pred EEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCCceEEEEEcCCCceEEEEEEcCEeeccceEEEeccch
Q psy9135 812 VVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGG 891 (1107)
Q Consensus 812 ll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~G~G 891 (1107)
.++.|...+..+|..+. -..+.-++.-..++.++.++..+.+...++|||+|.+.|.++-+.+|.+... ...++| |
T Consensus 92 ~~~vp~~~~~~~~~~~~-~~~~~aGl~~~~ii~e~~A~a~~~~~~~~~vvDIGggtt~i~v~~~g~~~~~--~~~~~G-G 167 (267)
T PRK15080 92 ATAIPPGTSEGDPRAII-NVVESAGLEVTHVLDEPTAAAAVLGIDNGAVVDIGGGTTGISILKDGKVVYS--ADEPTG-G 167 (267)
T ss_pred EEEeCCCCCchhHHHHH-HHHHHcCCceEEEechHHHHHHHhCCCCcEEEEeCCCcEEEEEEECCeEEEE--ecccCc-h
Confidence 77888877666777666 4556788888889999998888877777899999999999998899987643 567999 9
Q ss_pred HHHHHHHHHHH
Q psy9135 892 QSVESHIRSLL 902 (1107)
Q Consensus 892 ~~lt~~L~~lL 902 (1107)
+++|+.+.+.+
T Consensus 168 ~~it~~Ia~~l 178 (267)
T PRK15080 168 THMSLVLAGAY 178 (267)
T ss_pred HHHHHHHHHHh
Confidence 99999887765
No 70
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=97.81 E-value=0.00044 Score=86.67 Aligned_cols=95 Identities=21% Similarity=0.184 Sum_probs=73.1
Q ss_pred ceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCC-----ceEEEEEcCCCceEEEEEEcCE--e-ec
Q psy9135 809 KRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVYEGV--P-VL 880 (1107)
Q Consensus 809 ~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~-----~tglVVDiG~~~T~v~PV~dG~--~-l~ 880 (1107)
..++|+.|...+..+|+.+.+.. +.-|+.-+.++++|.+|++++|. .+-+|+|+|.+++.|+-+--+. . +.
T Consensus 134 ~~~VItVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~vl 212 (627)
T PRK00290 134 TEAVITVPAYFNDAQRQATKDAG-KIAGLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVL 212 (627)
T ss_pred ceEEEEECCCCCHHHHHHHHHHH-HHcCCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEEE
Confidence 46899999999999999886554 56788889999999999888753 5699999999999887664431 1 11
Q ss_pred cceEEEeccchHHHHHHHHHHHHhh
Q psy9135 881 CAWKDLSLGGGQSVESHIRSLLIDE 905 (1107)
Q Consensus 881 ~~~~~~~~G~G~~lt~~L~~lL~~~ 905 (1107)
......++| |.++++.|.+.+.++
T Consensus 213 a~~gd~~lG-G~d~D~~l~~~~~~~ 236 (627)
T PRK00290 213 STNGDTHLG-GDDFDQRIIDYLADE 236 (627)
T ss_pred EecCCCCcC-hHHHHHHHHHHHHHH
Confidence 112235789 999999999888654
No 71
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=97.76 E-value=0.00055 Score=80.00 Aligned_cols=87 Identities=18% Similarity=0.114 Sum_probs=72.3
Q ss_pred HHHhhcCcceEEEecchhhhhccC-----CCceEEEEEeCCCceEEEEeecCEecccceEEecccHHHHHHHHHHhhhhh
Q psy9135 136 VLFKHYEVLSLLYVPSHLVSLCTL-----GVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVE 210 (1107)
Q Consensus 136 ilFE~~~vpsv~~~~~~lls~y~~-----g~~tglVVDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~ 210 (1107)
-.+|+-+..=-.+.-++++|..++ -.-.+++||+|+.+|+|+-..+|.+... ..+|+||+++|+-+...
T Consensus 172 k~v~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~~~--~~ipvgG~~vT~DIa~~---- 245 (418)
T COG0849 172 KCVERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALRYT--GVIPVGGDHVTKDIAKG---- 245 (418)
T ss_pred HHHHHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEEEE--eeEeeCccHHHHHHHHH----
Confidence 456788888888888888888775 2367999999999999999999999966 78999999999999888
Q ss_pred hhhhhhhHHHHhhcCCCCCCccccccccCCCHHHHHHHHHhceee
Q psy9135 211 SHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFV 255 (1107)
Q Consensus 211 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~iKe~~c~v 255 (1107)
|+ .+...+|+||.++...
T Consensus 246 ----------l~-----------------t~~~~AE~iK~~~g~a 263 (418)
T COG0849 246 ----------LK-----------------TPFEEAERIKIKYGSA 263 (418)
T ss_pred ----------hC-----------------CCHHHHHHHHHHcCcc
Confidence 21 3578899999887533
No 72
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=97.73 E-value=0.00053 Score=85.50 Aligned_cols=95 Identities=22% Similarity=0.208 Sum_probs=72.3
Q ss_pred ceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCC------ceEEEEEcCCCceEEEEEEc--CEe-e
Q psy9135 809 KRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV------NTGLVLDIGYSEATLLPVYE--GVP-V 879 (1107)
Q Consensus 809 ~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~------~tglVVDiG~~~T~v~PV~d--G~~-l 879 (1107)
..++|+.|...+..+|+.+.+. .+.-|+.-+.++++|.+|++++|. .+-+|+|+|++++.++-+.- |.. +
T Consensus 131 ~~~VItVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v 209 (595)
T TIGR02350 131 TEAVITVPAYFNDAQRQATKDA-GKIAGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEV 209 (595)
T ss_pred CeEEEEECCCCCHHHHHHHHHH-HHHcCCceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEE
Confidence 4689999999999999988774 455788889999999999887653 46899999999998876643 211 1
Q ss_pred ccceEEEeccchHHHHHHHHHHHHhh
Q psy9135 880 LCAWKDLSLGGGQSVESHIRSLLIDE 905 (1107)
Q Consensus 880 ~~~~~~~~~G~G~~lt~~L~~lL~~~ 905 (1107)
..+....++| |.++|+.|.+.+.++
T Consensus 210 ~~~~gd~~lG-G~d~D~~l~~~~~~~ 234 (595)
T TIGR02350 210 LSTAGDTHLG-GDDFDQRIIDWLADE 234 (595)
T ss_pred EEecCCcccC-chhHHHHHHHHHHHH
Confidence 1112234788 999999999888654
No 73
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=97.72 E-value=0.00065 Score=84.45 Aligned_cols=96 Identities=16% Similarity=0.152 Sum_probs=74.7
Q ss_pred CceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccC-----CceEEEEEcCCCceEEEEEE--cCEe-e
Q psy9135 808 DKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLG-----VNTGLVLDIGYSEATLLPVY--EGVP-V 879 (1107)
Q Consensus 808 ~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g-----~~tglVVDiG~~~T~v~PV~--dG~~-l 879 (1107)
-..++|+.|...+..+|+.+.+. .+.-|+.-+.++++|.+|++++| ..+-+|+|+|++++.|+-+- +|.. +
T Consensus 129 v~~~VItVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~~v 207 (599)
T TIGR01991 129 LVGAVITVPAYFDDAQRQATKDA-ARLAGLNVLRLLNEPTAAAVAYGLDKASEGIYAVYDLGGGTFDVSILKLTKGVFEV 207 (599)
T ss_pred cceEEEEECCCCCHHHHHHHHHH-HHHcCCCceEEecCHHHHHHHHhhccCCCCEEEEEEcCCCeEEEEEEEEcCCeEEE
Confidence 35799999999999999988776 47789999999999999988775 34679999999999987653 3321 1
Q ss_pred ccceEEEeccchHHHHHHHHHHHHhh
Q psy9135 880 LCAWKDLSLGGGQSVESHIRSLLIDE 905 (1107)
Q Consensus 880 ~~~~~~~~~G~G~~lt~~L~~lL~~~ 905 (1107)
........+| |.++|+.|.+.+.++
T Consensus 208 la~~gd~~lG-G~d~D~~l~~~l~~~ 232 (599)
T TIGR01991 208 LATGGDSALG-GDDFDHALAKWILKQ 232 (599)
T ss_pred EEEcCCCCCC-HHHHHHHHHHHHHHh
Confidence 1111224788 999999999999765
No 74
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=97.67 E-value=0.0005 Score=79.87 Aligned_cols=78 Identities=12% Similarity=0.114 Sum_probs=59.6
Q ss_pred cHHHHHHHHHHHHhhcCcceEEEecchhhh--hcc--------C-CCc-eEEEEEeCCCceEEEEeecCEecccceEEec
Q psy9135 126 PTVWRNTLAKVLFKHYEVLSLLYVPSHLVS--LCT--------L-GVN-TGLVLDIGYSEATLLPVYEGVPVLCAWKDLS 193 (1107)
Q Consensus 126 ~~~~re~l~eilFE~~~vpsv~~~~~~lls--~y~--------~-g~~-tglVVDiG~~~T~V~PV~dG~vl~~~~~~~~ 193 (1107)
++...+.+.++ |+..|+.-..+..++++. ++. . ... +.++||+|+.+|+++-+.+|.+... +.++
T Consensus 141 ~~~~v~~~~~~-~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~~~--r~i~ 217 (348)
T TIGR01175 141 RKEVVDSRLHA-LKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRMLFT--REVP 217 (348)
T ss_pred cHHHHHHHHHH-HHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEEEE--EEee
Confidence 67777777765 677777766666666554 331 1 122 4899999999999999999999865 8899
Q ss_pred ccHHHHHHHHHHh
Q psy9135 194 LGGQSVEAHIRRG 206 (1107)
Q Consensus 194 iGG~~lt~~L~~l 206 (1107)
+||.++++.+.+.
T Consensus 218 ~G~~~i~~~i~~~ 230 (348)
T TIGR01175 218 FGTRQLTSELSRA 230 (348)
T ss_pred chHHHHHHHHHHH
Confidence 9999999988776
No 75
>PRK13411 molecular chaperone DnaK; Provisional
Probab=97.64 E-value=0.0011 Score=83.34 Aligned_cols=96 Identities=17% Similarity=0.169 Sum_probs=72.7
Q ss_pred CceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCC------ceEEEEEcCCCceEEEEEE--cCEe-
Q psy9135 808 DKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV------NTGLVLDIGYSEATLLPVY--EGVP- 878 (1107)
Q Consensus 808 ~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~------~tglVVDiG~~~T~v~PV~--dG~~- 878 (1107)
-..++|+.|...+..+|+.+.+. .+.-|+.-+.++++|.+|++++|. .+-+|+|+|.+++.|+-+- +|..
T Consensus 133 v~~~VITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~ 211 (653)
T PRK13411 133 VTQAVITVPAYFTDAQRQATKDA-GTIAGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFE 211 (653)
T ss_pred cceEEEEECCCCCcHHHHHHHHH-HHHcCCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEE
Confidence 35699999999999999988765 456788889999999999988764 3479999999999887543 2221
Q ss_pred eccceEEEeccchHHHHHHHHHHHHhh
Q psy9135 879 VLCAWKDLSLGGGQSVESHIRSLLIDE 905 (1107)
Q Consensus 879 l~~~~~~~~~G~G~~lt~~L~~lL~~~ 905 (1107)
+....-...+| |.++++.|.+.+.++
T Consensus 212 V~at~gd~~LG-G~dfD~~l~~~l~~~ 237 (653)
T PRK13411 212 VKATAGNNHLG-GDDFDNCIVDWLVEN 237 (653)
T ss_pred EEEEecCCCcC-HHHHHHHHHHHHHHH
Confidence 11112224688 999999998888654
No 76
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=97.59 E-value=0.0014 Score=81.91 Aligned_cols=95 Identities=16% Similarity=0.133 Sum_probs=73.7
Q ss_pred ceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCC-----ceEEEEEcCCCceEEEEEE--cCEee-c
Q psy9135 809 KRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVY--EGVPV-L 880 (1107)
Q Consensus 809 ~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~-----~tglVVDiG~~~T~v~PV~--dG~~l-~ 880 (1107)
..++|+.|...+..+|+.+.+.. +.-|+.-+.++++|.+|++++|. .+-+|+|+|.+++.|+-+. +|..- .
T Consensus 161 ~~aVITVPayF~~~qR~at~~Aa-~~AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V~ 239 (657)
T PTZ00186 161 SNAVVTCPAYFNDAQRQATKDAG-TIAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVK 239 (657)
T ss_pred ceEEEEECCCCChHHHHHHHHHH-HHcCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEEE
Confidence 46899999999999998876644 56788889999999999988764 3689999999999887765 55332 2
Q ss_pred cceEEEeccchHHHHHHHHHHHHhh
Q psy9135 881 CAWKDLSLGGGQSVESHIRSLLIDE 905 (1107)
Q Consensus 881 ~~~~~~~~G~G~~lt~~L~~lL~~~ 905 (1107)
.+.-..++| |.++++.|.+.+.++
T Consensus 240 at~Gd~~LG-G~DfD~~l~~~~~~~ 263 (657)
T PTZ00186 240 ATNGDTHLG-GEDFDLALSDYILEE 263 (657)
T ss_pred EecCCCCCC-chhHHHHHHHHHHHH
Confidence 122235789 999999998887654
No 77
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=97.56 E-value=0.0014 Score=75.98 Aligned_cols=66 Identities=18% Similarity=0.066 Sum_probs=56.2
Q ss_pred cCcceEEEecchhhhhccCCC-------------ceEEEEEeCCCceEEEEeecCEecccceEEecccHHHHHHHHHHh
Q psy9135 141 YEVLSLLYVPSHLVSLCTLGV-------------NTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 141 ~~vpsv~~~~~~lls~y~~g~-------------~tglVVDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l 206 (1107)
..+..+.+.++++.++|.... ...+|||||+.+|.++-+.++.+.......++.|..++.+.+.+.
T Consensus 151 I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G~~~~~~~I~~~ 229 (344)
T PRK13917 151 INVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKGTIDVYKRIASH 229 (344)
T ss_pred EEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCCCcEEEEEEeCcEEcccccccccchHHHHHHHHHHH
Confidence 456778899999988875421 356999999999999999999999887788999999999999888
No 78
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=97.55 E-value=0.0022 Score=79.46 Aligned_cols=96 Identities=18% Similarity=0.177 Sum_probs=74.0
Q ss_pred CceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCC-----ceEEEEEcCCCceEEEEEE--cCEee-
Q psy9135 808 DKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVY--EGVPV- 879 (1107)
Q Consensus 808 ~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~-----~tglVVDiG~~~T~v~PV~--dG~~l- 879 (1107)
-..++|+.|...+..+|+.+.+. .+.-|+.-+.++++|.+|++++|. .+-+|+|+|.+++.|+-+- +|..-
T Consensus 141 v~~aVITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V 219 (595)
T PRK01433 141 ITKAVITVPAHFNDAARGEVMLA-AKIAGFEVLRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQV 219 (595)
T ss_pred cceEEEEECCCCCHHHHHHHHHH-HHHcCCCEEEEecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEEEEeCCeEEE
Confidence 35799999999999999888776 466788889999999999998864 3468999999999887653 44221
Q ss_pred ccceEEEeccchHHHHHHHHHHHHhh
Q psy9135 880 LCAWKDLSLGGGQSVESHIRSLLIDE 905 (1107)
Q Consensus 880 ~~~~~~~~~G~G~~lt~~L~~lL~~~ 905 (1107)
...--...+| |.++++.|.+.+.++
T Consensus 220 ~at~gd~~lG-G~d~D~~l~~~~~~~ 244 (595)
T PRK01433 220 IATNGDNMLG-GNDIDVVITQYLCNK 244 (595)
T ss_pred EEEcCCcccC-hHHHHHHHHHHHHHh
Confidence 1111223688 999999999998765
No 79
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=97.51 E-value=0.0024 Score=79.62 Aligned_cols=96 Identities=16% Similarity=0.179 Sum_probs=74.0
Q ss_pred CceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCC-----ceEEEEEcCCCceEEEEEE--cCEe-e
Q psy9135 808 DKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVY--EGVP-V 879 (1107)
Q Consensus 808 ~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~-----~tglVVDiG~~~T~v~PV~--dG~~-l 879 (1107)
-..++|+.|...+..+|+.+.+. .+..|+.-+.++++|.+|++++|. .+-+|+|+|.+++.|+-+- +|.. +
T Consensus 149 v~~~VITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~~~~~~~ev 227 (616)
T PRK05183 149 LDGAVITVPAYFDDAQRQATKDA-ARLAGLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSKGVFEV 227 (616)
T ss_pred cceEEEEECCCCCHHHHHHHHHH-HHHcCCCeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEeeCCEEEE
Confidence 35789999999999999888655 567899999999999999887653 3578999999999987664 3321 1
Q ss_pred ccceEEEeccchHHHHHHHHHHHHhh
Q psy9135 880 LCAWKDLSLGGGQSVESHIRSLLIDE 905 (1107)
Q Consensus 880 ~~~~~~~~~G~G~~lt~~L~~lL~~~ 905 (1107)
....-...+| |.++++.|.+.+.++
T Consensus 228 lat~gd~~lG-G~d~D~~l~~~~~~~ 252 (616)
T PRK05183 228 LATGGDSALG-GDDFDHLLADWILEQ 252 (616)
T ss_pred EEecCCCCcC-HHHHHHHHHHHHHHH
Confidence 1112224688 999999999998765
No 80
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=97.48 E-value=0.0027 Score=79.82 Aligned_cols=96 Identities=15% Similarity=0.168 Sum_probs=73.6
Q ss_pred CceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCC-------ceEEEEEcCCCceEEEEEE--cCEe
Q psy9135 808 DKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-------NTGLVLDIGYSEATLLPVY--EGVP 878 (1107)
Q Consensus 808 ~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~-------~tglVVDiG~~~T~v~PV~--dG~~ 878 (1107)
-..++|+.|.+.+..+|+.+.+. .+.-|+.-+.++++|.+|++++|. .+-+|+|+|++++.|+-+- +|..
T Consensus 140 v~~~VItVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~ 218 (653)
T PTZ00009 140 VKDAVVTVPAYFNDSQRQATKDA-GTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIF 218 (653)
T ss_pred cceeEEEeCCCCCHHHHHHHHHH-HHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeE
Confidence 35699999999999999887764 466789999999999999887753 4689999999999887654 4432
Q ss_pred e-ccceEEEeccchHHHHHHHHHHHHhh
Q psy9135 879 V-LCAWKDLSLGGGQSVESHIRSLLIDE 905 (1107)
Q Consensus 879 l-~~~~~~~~~G~G~~lt~~L~~lL~~~ 905 (1107)
- ....-..++| |+++++.|.+.+.++
T Consensus 219 ~v~a~~gd~~lG-G~d~D~~l~~~~~~~ 245 (653)
T PTZ00009 219 EVKATAGDTHLG-GEDFDNRLVEFCVQD 245 (653)
T ss_pred EEEEecCCCCCC-hHHHHHHHHHHHHHH
Confidence 1 1111224789 999999999888654
No 81
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=97.30 E-value=0.0084 Score=70.38 Aligned_cols=98 Identities=18% Similarity=0.094 Sum_probs=74.7
Q ss_pred chHHHHHHHHHHhcccCcceeeecccchhhhcccCC-----ceEEEEEcCCCceEEEEEEcCEeeccceEEEeccchHHH
Q psy9135 820 PTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSV 894 (1107)
Q Consensus 820 ~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~-----~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~G~G~~l 894 (1107)
++...+.+.+ +++..|+.-..+..+|+++++++.. ...+|||+|++.|+++.+.+|.+.. .+.+++| |+++
T Consensus 156 ~~~~v~~~~~-~~~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~~--~~~i~~G-G~~i 231 (371)
T TIGR01174 156 SSTILRNLVK-CVERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIRY--TKVIPIG-GNHI 231 (371)
T ss_pred EHHHHHHHHH-HHHHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEEE--Eeeecch-HHHH
Confidence 4445555554 4467788888889999998887642 2479999999999999999998664 5778999 9999
Q ss_pred HHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhceeecc
Q psy9135 895 ESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTT 942 (1107)
Q Consensus 895 t~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c~v~~ 942 (1107)
|+.+.+.+. ++...++++|.+++....
T Consensus 232 t~~i~~~l~---------------------~~~~~AE~lK~~~~~~~~ 258 (371)
T TIGR01174 232 TKDIAKALR---------------------TPLEEAERIKIKYGCASI 258 (371)
T ss_pred HHHHHHHhC---------------------CCHHHHHHHHHHeeEecc
Confidence 998876542 234479999999987653
No 82
>CHL00094 dnaK heat shock protein 70
Probab=97.25 E-value=0.0026 Score=79.58 Aligned_cols=95 Identities=22% Similarity=0.210 Sum_probs=74.5
Q ss_pred ceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCC-----ceEEEEEcCCCceEEEEEEcCEee---c
Q psy9135 809 KRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVYEGVPV---L 880 (1107)
Q Consensus 809 ~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~-----~tglVVDiG~~~T~v~PV~dG~~l---~ 880 (1107)
..++|+.|...+..+|+.+.+.. +.-|+.-+.++++|.+|++++|. .+-+|+|+|++++.|+-+..+... .
T Consensus 136 ~~~VItVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vl 214 (621)
T CHL00094 136 TQAVITVPAYFNDSQRQATKDAG-KIAGLEVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVL 214 (621)
T ss_pred CeEEEEECCCCCHHHHHHHHHHH-HHcCCceEEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEEEEcCCEEEEE
Confidence 46889999999999998887765 56788889999999999998764 367999999999999877544211 1
Q ss_pred cceEEEeccchHHHHHHHHHHHHhh
Q psy9135 881 CAWKDLSLGGGQSVESHIRSLLIDE 905 (1107)
Q Consensus 881 ~~~~~~~~G~G~~lt~~L~~lL~~~ 905 (1107)
......++| |.++|+.|.+.+.++
T Consensus 215 a~~gd~~lG-G~d~D~~l~~~~~~~ 238 (621)
T CHL00094 215 STSGDTHLG-GDDFDKKIVNWLIKE 238 (621)
T ss_pred EEecCCCcC-hHHHHHHHHHHHHHH
Confidence 122235799 999999999888654
No 83
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.25 E-value=0.015 Score=64.45 Aligned_cols=71 Identities=18% Similarity=0.287 Sum_probs=53.9
Q ss_pred HHHHHhhcCcceEEEecchhhhhcc-------CC-Cce---EEEEEeCCCceEEEEeecCEecccceEEecccHHHHHHH
Q psy9135 134 AKVLFKHYEVLSLLYVPSHLVSLCT-------LG-VNT---GLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAH 202 (1107)
Q Consensus 134 ~eilFE~~~vpsv~~~~~~lls~y~-------~g-~~t---glVVDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~~ 202 (1107)
-.-.||.-|.....+-.++.+..-+ .| .+. .+|+|||+..|.++-+++|+++.. +..++||+++++.
T Consensus 154 ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk~ly~--r~~~~g~~Qlt~~ 231 (354)
T COG4972 154 RIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGKILYT--REVPVGTDQLTQE 231 (354)
T ss_pred HHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCeeeeE--eeccCcHHHHHHH
Confidence 3346777777777766555443322 12 233 459999999999999999999987 8899999999999
Q ss_pred HHHh
Q psy9135 203 IRRG 206 (1107)
Q Consensus 203 L~~l 206 (1107)
+.+.
T Consensus 232 i~r~ 235 (354)
T COG4972 232 IQRA 235 (354)
T ss_pred HHHH
Confidence 9888
No 84
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=97.25 E-value=0.0018 Score=75.05 Aligned_cols=108 Identities=21% Similarity=0.298 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHhhccccCCC-----------------CCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecc--hh
Q psy9135 93 YGLLIEFIRKIFFKYFVTSPK-----------------DKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPS--HL 153 (1107)
Q Consensus 93 ~~~le~i~~~~~~~~L~~~~~-----------------~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~--~l 153 (1107)
.+.++..+++=..+++..+.. ...|+++-. ++..-+... -+|+..|..-..+-.+ ++
T Consensus 87 ~~el~~~I~~Ea~~~iP~~~~e~~~D~~vl~~~~~~~~~~~Vll~Aa---~k~~v~~~~-~~~~~aGL~~~~vDv~~~Al 162 (340)
T PF11104_consen 87 EKELEEAIRWEAEQYIPFPLEEVVFDYQVLGESEDGEEKMEVLLVAA---PKEIVESYV-ELFEEAGLKPVAVDVEAFAL 162 (340)
T ss_dssp HHHHHHHHHHHHGGG-SS----EEEEEEESS-GS-TTSEEEEEEEEE---EHHHHHHHH-HHHHHTT-EEEEEEEHHHHG
T ss_pred HHHHHHHHHHHHHhhCCCChhHeEEEEEEeccCCCCCCceEEEEEEE---cHHHHHHHH-HHHHHcCCceEEEeehHHHH
Confidence 355666666665555543322 234555443 444444444 3677788776555444 33
Q ss_pred hhhccC---------CCceEEEEEeCCCceEEEEeecCEecccceEEecccHHHHHHHHHHh
Q psy9135 154 VSLCTL---------GVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 154 ls~y~~---------g~~tglVVDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l 206 (1107)
+-+|.. ...+-++||+|++.|+++-+.+|.++.. +.+++||+++++-+.+.
T Consensus 163 ~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~~~f~--R~i~~G~~~l~~~i~~~ 222 (340)
T PF11104_consen 163 ARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQNGKPIFS--RSIPIGGNDLTEAIARE 222 (340)
T ss_dssp GGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEETTEEEEE--EEES-SHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEECCEEEEE--EEEeeCHHHHHHHHHHh
Confidence 344432 1235699999999999999999999965 78999999999999887
No 85
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=97.18 E-value=0.006 Score=76.80 Aligned_cols=96 Identities=21% Similarity=0.173 Sum_probs=75.6
Q ss_pred CceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCC-----ceEEEEEcCCCceEEEEEE--cCEee-
Q psy9135 808 DKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVY--EGVPV- 879 (1107)
Q Consensus 808 ~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~-----~tglVVDiG~~~T~v~PV~--dG~~l- 879 (1107)
-..++|+.|...+..+|+.+.+.. +.-|++-+.++++|.+|++++|. .+-+|+|+|++++.|+-+. +|..-
T Consensus 174 v~~~VITVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v 252 (663)
T PTZ00400 174 VKQAVITVPAYFNDSQRQATKDAG-KIAGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEV 252 (663)
T ss_pred CceEEEEECCCCCHHHHHHHHHHH-HHcCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEE
Confidence 457999999999999999887644 56789999999999999998874 3689999999999998654 45332
Q ss_pred ccceEEEeccchHHHHHHHHHHHHhh
Q psy9135 880 LCAWKDLSLGGGQSVESHIRSLLIDE 905 (1107)
Q Consensus 880 ~~~~~~~~~G~G~~lt~~L~~lL~~~ 905 (1107)
....-..++| |.++|+.|.+.+.++
T Consensus 253 ~a~~gd~~LG-G~d~D~~l~~~l~~~ 277 (663)
T PTZ00400 253 KATNGNTSLG-GEDFDQRILNYLIAE 277 (663)
T ss_pred EecccCCCcC-HHHHHHHHHHHHHHH
Confidence 1122235789 999999999888764
No 86
>PRK13410 molecular chaperone DnaK; Provisional
Probab=97.09 E-value=0.0069 Score=76.12 Aligned_cols=95 Identities=18% Similarity=0.166 Sum_probs=73.6
Q ss_pred ceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCC-----ceEEEEEcCCCceEEEEEE--cCEe-ec
Q psy9135 809 KRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVY--EGVP-VL 880 (1107)
Q Consensus 809 ~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~-----~tglVVDiG~~~T~v~PV~--dG~~-l~ 880 (1107)
..++|+.|...+..+|+.+.+.. +.-|+.-+.++++|.+|++++|. .+-+|+|+|++++.|+-+. +|.. +.
T Consensus 136 ~~~VITVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~ 214 (668)
T PRK13410 136 TGAVITVPAYFNDSQRQATRDAG-RIAGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVK 214 (668)
T ss_pred ceEEEEECCCCCHHHHHHHHHHH-HHcCCCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEE
Confidence 46999999999999998877665 66788889999999999988764 4689999999999887654 3321 11
Q ss_pred cceEEEeccchHHHHHHHHHHHHhh
Q psy9135 881 CAWKDLSLGGGQSVESHIRSLLIDE 905 (1107)
Q Consensus 881 ~~~~~~~~G~G~~lt~~L~~lL~~~ 905 (1107)
.+.-..++| |.++++.|.+.+.++
T Consensus 215 at~gd~~lG-G~dfD~~l~~~l~~~ 238 (668)
T PRK13410 215 ATSGDTQLG-GNDFDKRIVDWLAEQ 238 (668)
T ss_pred EeecCCCCC-hhHHHHHHHHHHHHH
Confidence 122234689 999999998887654
No 87
>PLN03184 chloroplast Hsp70; Provisional
Probab=97.05 E-value=0.005 Score=77.53 Aligned_cols=96 Identities=19% Similarity=0.169 Sum_probs=74.1
Q ss_pred CceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCC-----ceEEEEEcCCCceEEEEEEcCEe---e
Q psy9135 808 DKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVYEGVP---V 879 (1107)
Q Consensus 808 ~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~-----~tglVVDiG~~~T~v~PV~dG~~---l 879 (1107)
-..++|+.|...+..+|+.+.+.. +.-|+.-+.++++|.+|++++|. .+-+|+|+|.+++.|+-+.-+.. +
T Consensus 172 v~~~VITVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~eV 250 (673)
T PLN03184 172 VTKAVITVPAYFNDSQRTATKDAG-RIAGLEVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLEVGDGVFEV 250 (673)
T ss_pred CCeEEEEECCCCCHHHHHHHHHHH-HHCCCCeEEEeCcHHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEecCCEEEE
Confidence 357999999999999998877644 66789999999999999988764 36799999999999876643311 1
Q ss_pred ccceEEEeccchHHHHHHHHHHHHhh
Q psy9135 880 LCAWKDLSLGGGQSVESHIRSLLIDE 905 (1107)
Q Consensus 880 ~~~~~~~~~G~G~~lt~~L~~lL~~~ 905 (1107)
..+.-..++| |.++++.|.+.+.++
T Consensus 251 la~~gd~~LG-G~dfD~~L~~~~~~~ 275 (673)
T PLN03184 251 LSTSGDTHLG-GDDFDKRIVDWLASN 275 (673)
T ss_pred EEecCCCccC-HHHHHHHHHHHHHHH
Confidence 1111235789 999999999888664
No 88
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=96.95 E-value=0.0048 Score=70.86 Aligned_cols=162 Identities=17% Similarity=0.104 Sum_probs=108.1
Q ss_pred EecCcceEEEeccC-CCCc-cEEEecceeccCCCC--------c----------cceeecCCHHh------------hH-
Q psy9135 741 LDIGSKYTKYGIFG-SFQP-KGFIKSQVKDPHTNK--------L----------RNLYEYKDADD------------LY- 787 (1107)
Q Consensus 741 iD~Gs~~iK~G~ag-e~~P-~~i~ps~vg~~~~~~--------~----------~~~~~~~~~~~------------~~- 787 (1107)
||+|-.++|+=+.+ +..+ +.++||.++...... . +.+++|+.+.. +|
T Consensus 2 iDvGyg~~K~~~~~~~~~~~~~~fPS~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~y~VG~~a~~~~~~~~~~~~~~~~~ 81 (320)
T TIGR03739 2 VDVGYGNTKFVSQVRGTDIRCASFPSVAPPSSRESPAWPGGSEARKTVCVPVGGLFYEVGPDVSLAADTNRARQLHDEYT 81 (320)
T ss_pred ccccCCceEEEecCCCCceeeEEcccccccccccccccccccCCCceEEEEECCEEEEeccchhhcccCccceecccccc
Confidence 79999999977642 2233 456788775431110 0 33445543211 11
Q ss_pred --HHHHHHHHHHHHhccccCCCCceEEEEeccCCchHHHHHHHHHHhcc--------cCcceeeecccchhhhccc----
Q psy9135 788 --GLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKH--------YEVLSLLYVPSHLVSLCTL---- 853 (1107)
Q Consensus 788 --d~le~i~~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~eiLFE~--------~~vpsv~~~~~~~lalya~---- 853 (1107)
+....++.+++.. .+.+ ....+++--|...-...|+.+.+.+-.. ..+..+.+.||++.|++..
T Consensus 82 ~~~~~~~L~~~Al~~-~~~~-~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~ 159 (320)
T TIGR03739 82 ETPEYMALLRGALAL-SKVR-EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQH 159 (320)
T ss_pred CCHHHHHHHHHHHHH-hcCC-CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcC
Confidence 3445566666633 2222 1223555566555566788888877543 5788999999999887753
Q ss_pred -----CCceEEEEEcCCCceEEEEEEcCEeeccceEEEeccchHHHHHHHHHHHHhh
Q psy9135 854 -----GVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDE 905 (1107)
Q Consensus 854 -----g~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~ 905 (1107)
...+.+|||+|+.+|.++.+-++.+..+.....+.| -..+.+.+.+.|.++
T Consensus 160 ~~~~~~~~~~lVIDIG~~TtD~~~~~~~~~~~~~s~s~~~G-~~~~~~~I~~~i~~~ 215 (320)
T TIGR03739 160 GKLLTGKEQSLIIDPGYFTFDWLVARGMRLVQKRSGSVNGG-MSDIYRLLAAEISKD 215 (320)
T ss_pred CCcccCcCcEEEEecCCCeeeeehccCCEEcccccCCchhH-HHHHHHHHHHHHHhh
Confidence 334579999999999999888888888777788999 999999999998765
No 89
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=96.77 E-value=0.077 Score=61.54 Aligned_cols=67 Identities=19% Similarity=0.293 Sum_probs=46.6
Q ss_pred CHHHHHHHHHhccCccchhhhhccEEEEcCCCCccChHHHHHHHHHhhcCCCCccccccceeEEEEcCCCCCccccchhH
Q psy9135 455 NIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGG 534 (1107)
Q Consensus 455 gL~e~I~~sI~~~~~d~r~~L~~nIvLtGG~S~ipGf~eRL~~EL~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~aW~Gg 534 (1107)
||..+|.+-+.. -.-.+..+-+.|+++||.++.+|+.+.|++.|. .+++.++ +|++..=+||
T Consensus 336 Gl~~SIa~rv~~-~l~~~~~i~~~VvftGGva~N~gvv~ale~~Lg----------------~~iivPe-~pq~~GAiGA 397 (404)
T TIGR03286 336 AACHSVAEQVYE-QQLQEIDVREPVILVGGTSLIEGLVKALGDLLG----------------IEVVVPE-YSQYIGAVGA 397 (404)
T ss_pred HHHHHHHHHHHH-HHhhcCCCCCcEEEECChhhhHHHHHHHHHHhC----------------CcEEECC-cccHHHHHHH
Confidence 566666555542 001122344569999999999999999999883 1233344 8999999999
Q ss_pred HhhcC
Q psy9135 535 AIFAA 539 (1107)
Q Consensus 535 silas 539 (1107)
+++|+
T Consensus 398 AL~A~ 402 (404)
T TIGR03286 398 ALLAS 402 (404)
T ss_pred HHHhc
Confidence 99985
No 90
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=96.66 E-value=0.014 Score=73.06 Aligned_cols=95 Identities=19% Similarity=0.231 Sum_probs=69.7
Q ss_pred ceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCC------ceEEEEEcCCCceEEEEEE--cCEee-
Q psy9135 809 KRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV------NTGLVLDIGYSEATLLPVY--EGVPV- 879 (1107)
Q Consensus 809 ~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~------~tglVVDiG~~~T~v~PV~--dG~~l- 879 (1107)
..++|+.|...+..+|+.+.+.+ +.-|++-+.+++.|.+|+++++. .+-+|+|+|++++.|+-+. +|..-
T Consensus 136 ~~~vitVPa~~~~~qr~~~~~Aa-~~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v 214 (602)
T PF00012_consen 136 TDVVITVPAYFTDEQRQALRDAA-ELAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEV 214 (602)
T ss_dssp EEEEEEE-TT--HHHHHHHHHHH-HHTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEE
T ss_pred ccceeeechhhhhhhhhcccccc-cccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccc
Confidence 46899999999999998887765 45788888899999998876642 4789999999999877664 45322
Q ss_pred ccceEEEeccchHHHHHHHHHHHHhh
Q psy9135 880 LCAWKDLSLGGGQSVESHIRSLLIDE 905 (1107)
Q Consensus 880 ~~~~~~~~~G~G~~lt~~L~~lL~~~ 905 (1107)
........+| |+++++.|.+.+.++
T Consensus 215 ~~~~~~~~lG-G~~~D~~l~~~~~~~ 239 (602)
T PF00012_consen 215 LATAGDNNLG-GRDFDEALAEYLLEK 239 (602)
T ss_dssp EEEEEETTCS-HHHHHHHHHHHHHHH
T ss_pred cccccccccc-cceecceeecccccc
Confidence 1222335688 999999999999765
No 91
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=96.60 E-value=0.084 Score=58.31 Aligned_cols=43 Identities=16% Similarity=0.155 Sum_probs=31.5
Q ss_pred EEEEEeCCCceEEEEeecCEecccce-EEecccHHHHHHHHHHh
Q psy9135 164 GLVLDIGYSEATLLPVYEGVPVLCAW-KDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 164 glVVDiG~~~T~V~PV~dG~vl~~~~-~~~~iGG~~lt~~L~~l 206 (1107)
-.|||||.+.|.++-+.+|.+..-.. .+...|+..+.+.+.+.
T Consensus 93 ~~vidiGgqd~k~i~~~~g~~~~~~~n~~ca~Gtg~f~e~~a~~ 136 (248)
T TIGR00241 93 RGVIDIGGQDSKVIKIDDGKVDDFTMNDKCAAGTGRFLEVTARR 136 (248)
T ss_pred CEEEEecCCeeEEEEECCCcEeeeeecCcccccccHHHHHHHHH
Confidence 45999999999999999998762211 34667777666666555
No 92
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=96.55 E-value=0.011 Score=67.75 Aligned_cols=109 Identities=19% Similarity=0.171 Sum_probs=78.4
Q ss_pred HHHHHHHHHhhccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhh--------cCcceEEEecchhhhhccC--------
Q psy9135 96 LIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKH--------YEVLSLLYVPSHLVSLCTL-------- 159 (1107)
Q Consensus 96 le~i~~~~~~~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~--------~~vpsv~~~~~~lls~y~~-------- 159 (1107)
...++.+++.. .+.+ ....+++=-|...-...|+.+.+.+-.. ..+..+.+.+|++.|++..
T Consensus 86 ~~~L~~~Al~~-~~~~-~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~ 163 (320)
T TIGR03739 86 YMALLRGALAL-SKVR-EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLL 163 (320)
T ss_pred HHHHHHHHHHH-hcCC-CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcc
Confidence 44555666533 2221 1223444455544456788888877543 5788899999999887653
Q ss_pred -CCceEEEEEeCCCceEEEEeecCEecccceEEecccHHHHHHHHHHh
Q psy9135 160 -GVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 160 -g~~tglVVDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l 206 (1107)
...+.+|||||+.+|.++.+.++.+........+.|-..+.+.+.+.
T Consensus 164 ~~~~~~lVIDIG~~TtD~~~~~~~~~~~~~s~s~~~G~~~~~~~I~~~ 211 (320)
T TIGR03739 164 TGKEQSLIIDPGYFTFDWLVARGMRLVQKRSGSVNGGMSDIYRLLAAE 211 (320)
T ss_pred cCcCcEEEEecCCCeeeeehccCCEEcccccCCchhHHHHHHHHHHHH
Confidence 34567999999999999988888888877778899999999988888
No 93
>PRK11678 putative chaperone; Provisional
Probab=96.41 E-value=0.046 Score=65.51 Aligned_cols=88 Identities=14% Similarity=0.082 Sum_probs=64.6
Q ss_pred ceEEEEeccCCc-----hHHHHHH--HHHHhcccCcceeeecccchhhhcccCC-----ceEEEEEcCCCceEEEEEEcC
Q psy9135 809 KRIVVVESVLTP-----TVWRNTL--AKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVYEG 876 (1107)
Q Consensus 809 ~~vll~e~~~~~-----~~~re~l--~eiLFE~~~vpsv~~~~~~~lalya~g~-----~tglVVDiG~~~T~v~PV~dG 876 (1107)
..++|+.|.... ..+|+.. ..-..+.-|++.+.++++|.+|++++|. .+-+|+|+|.+++.++-|-=+
T Consensus 150 ~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~D~GGGT~D~Svv~~~ 229 (450)
T PRK11678 150 TQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSMLLMG 229 (450)
T ss_pred CcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccCCCCeEEEEEeCCCeEEEEEEEec
Confidence 568999998765 5555432 3445577899999999999999998873 468999999999988766421
Q ss_pred -----------EeeccceEEEeccchHHHHHHHH
Q psy9135 877 -----------VPVLCAWKDLSLGGGQSVESHIR 899 (1107)
Q Consensus 877 -----------~~l~~~~~~~~~G~G~~lt~~L~ 899 (1107)
.++-++- ..+| |+++++.|.
T Consensus 230 ~~~~~~~~r~~~vla~~G--~~lG-G~DfD~~L~ 260 (450)
T PRK11678 230 PSWRGRADRSASLLGHSG--QRIG-GNDLDIALA 260 (450)
T ss_pred CcccccCCcceeEEecCC--CCCC-hHHHHHHHH
Confidence 1222221 3699 999999986
No 94
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.1 Score=64.61 Aligned_cols=97 Identities=20% Similarity=0.199 Sum_probs=77.2
Q ss_pred CCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCC-----ceEEEEEcCCCceEEEEEEcC---Ee
Q psy9135 807 KDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVYEG---VP 878 (1107)
Q Consensus 807 ~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~-----~tglVVDiG~~~T~v~PV~dG---~~ 878 (1107)
.-..++++.|.+....+|+.+.+.. ...|++-+.+++.|.+|+|++|. .+-+|+|+|.+.+.++=|-=+ +.
T Consensus 119 ~v~~~VItVPayF~d~qR~at~~A~-~iaGl~vlrlinEPtAAAlayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~e 197 (579)
T COG0443 119 KVTDAVITVPAYFNDAQRQATKDAA-RIAGLNVLRLINEPTAAALAYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFE 197 (579)
T ss_pred CcceEEEEeCCCCCHHHHHHHHHHH-HHcCCCeEEEecchHHHHHHhHhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEE
Confidence 4567999999999999987766554 55899999999999999999874 478999999999998877543 22
Q ss_pred eccceEEEeccchHHHHHHHHHHHHhh
Q psy9135 879 VLCAWKDLSLGGGQSVESHIRSLLIDE 905 (1107)
Q Consensus 879 l~~~~~~~~~G~G~~lt~~L~~lL~~~ 905 (1107)
.........+| |++++..|...+..+
T Consensus 198 v~at~gd~~LG-GddfD~~l~~~~~~~ 223 (579)
T COG0443 198 VLATGGDNHLG-GDDFDNALIDYLVME 223 (579)
T ss_pred EeecCCCcccC-chhHHHHHHHHHHHH
Confidence 23344455788 999999999888765
No 95
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=95.96 E-value=0.52 Score=52.76 Aligned_cols=67 Identities=19% Similarity=0.261 Sum_probs=46.3
Q ss_pred CHHHHHHHHHhccCccchhhhhccEEEEcCCCCccChHHHHHHHHHhhcCCCCccccccceeEEEEcCCCCCccccchhH
Q psy9135 455 NIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGG 534 (1107)
Q Consensus 455 gL~e~I~~sI~~~~~d~r~~L~~nIvLtGG~S~ipGf~eRL~~EL~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~aW~Gg 534 (1107)
||.+.|.+-+... -.|..+-++|+++||.+.-+|+.+.|+++|.. ++.+ .|.+|++..=+||
T Consensus 221 Gl~~sia~rv~~~--~~~~~i~~~v~~~GGva~N~~l~~al~~~Lg~--------------~v~~--~p~~p~~~GAlGA 282 (293)
T TIGR03192 221 AYCQAMAERVVSL--LERIGVEEGFFITGGIAKNPGVVKRIERILGI--------------KAVD--TKIDSQIAGALGA 282 (293)
T ss_pred HHHHHHHHHHHHH--hcccCCCCCEEEECcccccHHHHHHHHHHhCC--------------Ccee--CCCCccHHHHHHH
Confidence 5555555544322 11334557899999999999999999998842 2221 1336899999999
Q ss_pred HhhcC
Q psy9135 535 AIFAA 539 (1107)
Q Consensus 535 silas 539 (1107)
+++|.
T Consensus 283 AL~A~ 287 (293)
T TIGR03192 283 ALFGY 287 (293)
T ss_pred HHHHH
Confidence 99983
No 96
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=95.95 E-value=0.39 Score=53.02 Aligned_cols=50 Identities=24% Similarity=0.425 Sum_probs=38.8
Q ss_pred ccEEEEcCCCCccChHHHHHHHHHhhcCCCCccccccceeEEEEcCCCCCccccchhHHhhc
Q psy9135 477 ENILLTGGTAMTPGLKYRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFA 538 (1107)
Q Consensus 477 ~nIvLtGG~S~ipGf~eRL~~EL~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~aW~Ggsila 538 (1107)
.+|+++||.+.-+|+.+.|+++|... + ..+.+..++ +|++..=+||+++|
T Consensus 213 ~~v~~~GGva~n~~~~~~le~~l~~~-~----------~~~~v~~~~-~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 213 GTVLCTGGLALDAGLLEALKDAIQEA-K----------MAVAAENHP-DAIYAGAIGAALWG 262 (262)
T ss_pred CcEEEECcccccHHHHHHHHHHhccC-C----------cceEecCCC-cchHHHHHHHHHcC
Confidence 46999999999999999999999532 1 134454444 78999889998875
No 97
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=95.83 E-value=0.097 Score=60.72 Aligned_cols=70 Identities=19% Similarity=0.087 Sum_probs=58.6
Q ss_pred cCcceeeecccchhhhcccCC-------------ceEEEEEcCCCceEEEEEEcCEeeccceEEEeccchHHHHHHHHHH
Q psy9135 835 YEVLSLLYVPSHLVSLCTLGV-------------NTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSL 901 (1107)
Q Consensus 835 ~~vpsv~~~~~~~lalya~g~-------------~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~G~G~~lt~~L~~l 901 (1107)
..+..+.+.+|++.++|.... ..-+|||+|+.+|.++-+.+|.+.......++.| ...+.+.+.+.
T Consensus 151 I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G-~~~~~~~I~~~ 229 (344)
T PRK13917 151 INVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKG-TIDVYKRIASH 229 (344)
T ss_pred EEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCCCcEEEEEEeCcEEcccccccccch-HHHHHHHHHHH
Confidence 456789999999999875422 2459999999999999999999988888889999 99999999999
Q ss_pred HHhh
Q psy9135 902 LIDE 905 (1107)
Q Consensus 902 L~~~ 905 (1107)
++.+
T Consensus 230 i~~~ 233 (344)
T PRK13917 230 ISKK 233 (344)
T ss_pred HHhh
Confidence 9544
No 98
>KOG0104|consensus
Probab=95.74 E-value=0.28 Score=59.85 Aligned_cols=91 Identities=16% Similarity=0.158 Sum_probs=67.3
Q ss_pred CeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC----------ceEEEEEeCCCceEEEEeecCEe
Q psy9135 115 KRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV----------NTGLVLDIGYSEATLLPVYEGVP 184 (1107)
Q Consensus 115 ~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~----------~tglVVDiG~~~T~V~PV~dG~v 184 (1107)
..+++|.|++.....|..+.+.. +-.|..-++++++..+++..+|. ..-+|-|+|.++|+++-|.--.+
T Consensus 159 kd~ViTVP~~F~qaeR~all~Aa-~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v 237 (902)
T KOG0104|consen 159 KDMVITVPPFFNQAERRALLQAA-QIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLV 237 (902)
T ss_pred hheEEeCCcccCHHHHHHHHHHH-HhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEee
Confidence 55899999999999999887643 34567778888888888776653 46788999999999987753222
Q ss_pred cc-------cceE------EecccHHHHHHHHHHh
Q psy9135 185 VL-------CAWK------DLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 185 l~-------~~~~------~~~iGG~~lt~~L~~l 206 (1107)
-. ..++ ....||..++..|++.
T Consensus 238 ~~k~~g~~~p~i~~~gvGfd~tLGG~e~~~rLr~~ 272 (902)
T KOG0104|consen 238 KTKEQGGKQPQIQVLGVGFDRTLGGLEMTMRLRDH 272 (902)
T ss_pred ccccccCccceEEEEeeccCCccchHHHHHHHHHH
Confidence 11 1112 2357899999999998
No 99
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=95.52 E-value=0.015 Score=59.84 Aligned_cols=65 Identities=18% Similarity=0.220 Sum_probs=56.0
Q ss_pred HHhhcCcceEEEecchhhhhccCCCceEEEEEeCCCceEEEEeecCEecccceEEecccHHHHHHHH
Q psy9135 137 LFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHI 203 (1107)
Q Consensus 137 lFE~~~vpsv~~~~~~lls~y~~g~~tglVVDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~~L 203 (1107)
..|.-|...++...+|-++++-.+.++|-|||+|..+|-|.-+-+|.++.. ---+-||.+++-.|
T Consensus 115 ViESAGlevl~vlDEPTAaa~vL~l~dg~VVDiGGGTTGIsi~kkGkViy~--ADEpTGGtHmtLvl 179 (277)
T COG4820 115 VIESAGLEVLHVLDEPTAAADVLQLDDGGVVDIGGGTTGISIVKKGKVIYS--ADEPTGGTHMTLVL 179 (277)
T ss_pred eecccCceeeeecCCchhHHHHhccCCCcEEEeCCCcceeEEEEcCcEEEe--ccCCCCceeEEEEE
Confidence 457788899999999999999999999999999999999999999999865 34577887765444
No 100
>KOG0100|consensus
Probab=95.41 E-value=0.9 Score=51.60 Aligned_cols=92 Identities=16% Similarity=0.132 Sum_probs=61.3
Q ss_pred CCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCC------CceEEEEEeCCCceEEE--EeecCEec
Q psy9135 114 DKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLG------VNTGLVLDIGYSEATLL--PVYEGVPV 185 (1107)
Q Consensus 114 ~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g------~~tglVVDiG~~~T~V~--PV~dG~vl 185 (1107)
-...++|.|.+....+|+..-.. =---|..-+-+++.|.+|+.++| -.+-+|.|.|.++-.|. .|.+|.--
T Consensus 172 v~~AVvTvPAYFNDAQrQATKDA-GtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFe 250 (663)
T KOG0100|consen 172 VTHAVVTVPAYFNDAQRQATKDA-GTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFE 250 (663)
T ss_pred ccceEEecchhcchHHHhhhccc-ceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEE
Confidence 34578888888888888864321 11123344666777777776665 36889999999987664 66677532
Q ss_pred -ccceEEecccHHHHHHHHHHh
Q psy9135 186 -LCAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 186 -~~~~~~~~iGG~~lt~~L~~l 206 (1107)
....--...||.+.++...+.
T Consensus 251 VlaTnGDThLGGEDFD~rvm~~ 272 (663)
T KOG0100|consen 251 VLATNGDTHLGGEDFDQRVMEY 272 (663)
T ss_pred EEecCCCcccCccchHHHHHHH
Confidence 222234679999998877766
No 101
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=95.29 E-value=0.11 Score=59.54 Aligned_cols=106 Identities=15% Similarity=0.197 Sum_probs=65.1
Q ss_pred HHHHHhhccccCCCCCeEEEEecC--C-Cc--HHHHHHHHH---HHH--------hhcCcceEEEecchhhhhccC----
Q psy9135 100 IRKIFFKYFVTSPKDKRIVVVESV--L-TP--TVWRNTLAK---VLF--------KHYEVLSLLYVPSHLVSLCTL---- 159 (1107)
Q Consensus 100 ~~~~~~~~L~~~~~~~~vllte~~--~-~~--~~~re~l~e---ilF--------E~~~vpsv~~~~~~lls~y~~---- 159 (1107)
..|.+. +-+..+.+-.+++.-|. + .. +..++.+.+ -+. +.+.+..+.+.|+++.|.|..
T Consensus 82 v~haL~-~~G~~~~~V~lvvGLPl~~y~~~~~~~~~~~i~rk~~n~~~~v~~~g~~~i~I~~V~V~PQ~~~A~~~~~~~~ 160 (318)
T PF06406_consen 82 VHHALL-KAGLEPQDVDLVVGLPLSEYYDQDKQKNEENIERKKENLMRPVELNGGYTITIKDVEVFPQSVGAVFDALMDL 160 (318)
T ss_dssp HHHHHH-HHS--SSEEEEEEEE-HHHHB-TTSSB-HHHHHHHHHHTTS-EEETTB---EEEEEEEEESSHHHHHHHHHTS
T ss_pred HHHHHH-HcCCCCCCeEEEecCCHHHHHhhhhhhHHHHHHhhhcccccceeecCceeEEEeeEEEEcccHHHHHHHHHhh
Confidence 466663 34666777777888773 1 11 122222221 121 144578999999999988873
Q ss_pred -CCceEEEEEeCCCceEEEEeecCEecccce-EEecccHHHHHHHHHHh
Q psy9135 160 -GVNTGLVLDIGYSEATLLPVYEGVPVLCAW-KDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 160 -g~~tglVVDiG~~~T~V~PV~dG~vl~~~~-~~~~iGG~~lt~~L~~l 206 (1107)
...+.+|||||+.+|.++-|.++....... ...+.|-..+.+.+.+.
T Consensus 161 ~~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~~~ 209 (318)
T PF06406_consen 161 DEDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIAQA 209 (318)
T ss_dssp -TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHHHH
T ss_pred cccCcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHHHH
Confidence 336789999999999999888776544433 34578999999999988
No 102
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=94.91 E-value=0.12 Score=61.81 Aligned_cols=96 Identities=19% Similarity=0.056 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHhcccCcceeeecccchhhhcccCC-----ceEEEEEcCCCceEEEEEEcCEeeccceEEEeccchHHHH
Q psy9135 821 TVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVE 895 (1107)
Q Consensus 821 ~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~-----~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~G~G~~lt 895 (1107)
+...+.+.+ .++.-++.-..++.+|++++++... ...+|||+|++.|.++-+.+|.+. ....+++| |+++|
T Consensus 165 ~~~~~~~~~-a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~--~~~~i~~G-G~~it 240 (420)
T PRK09472 165 NDMAKNIVK-AVERCGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALR--HTKVIPYA-GNVVT 240 (420)
T ss_pred hHHHHHHHH-HHHHcCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEE--EEeeeech-HHHHH
Confidence 344445555 5577888888889999999998653 247899999999999999999776 56789999 99999
Q ss_pred HHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhceeec
Q psy9135 896 SHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT 941 (1107)
Q Consensus 896 ~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c~v~ 941 (1107)
+.+.+.|. ++.+.++.+|.+.....
T Consensus 241 ~dIa~~l~---------------------i~~~~AE~lK~~~g~~~ 265 (420)
T PRK09472 241 SDIAYAFG---------------------TPPSDAEAIKVRHGCAL 265 (420)
T ss_pred HHHHHHhC---------------------cCHHHHHHHHHhcceec
Confidence 98876552 23347899998876543
No 103
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=94.86 E-value=0.14 Score=58.67 Aligned_cols=165 Identities=16% Similarity=0.152 Sum_probs=88.8
Q ss_pred EEEecCcceEEEeccCCCC-ccEEEecceeccCCC------Cc------cceeecC----CHH----hh--HHHHH-HHH
Q psy9135 739 VVLDIGSKYTKYGIFGSFQ-PKGFIKSQVKDPHTN------KL------RNLYEYK----DAD----DL--YGLLI-EFI 794 (1107)
Q Consensus 739 vViD~Gs~~iK~G~age~~-P~~i~ps~vg~~~~~------~~------~~~~~~~----~~~----~~--~d~le-~i~ 794 (1107)
|.||-|+..+|+.|..+.. =+.+.|+.....-.. .. ...|..+ +.+ .+ ...+. -..
T Consensus 3 i~iDdG~~~~K~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~y~v~g~~yt~~~~~~~~~~t~~~~y~~s~~n~~av 82 (318)
T PF06406_consen 3 IAIDDGSTNVKLAWYEDGKIKTSISPNSFRSGWKVSFMGDSKSFNYEVDGEKYTVDEVSSDALDTTHVDYQYSDLNLVAV 82 (318)
T ss_dssp EEEEE-SSEEEEEEE-SS-EEEEEEE--EESS----S-SSS---EEESSSSEEEESTTBTTTTSS-HGGGGGSHHHHHHH
T ss_pred EEEecCCCceeEEEecCCeEEEEeccccccccccccccCCCceeEEEECCEEEEEcCCCCccccccccccccchhhHHHH
Confidence 7899999999999985432 233556554322111 00 0111111 111 11 22332 345
Q ss_pred HHHHHhccccCCCCceEEEEeccC--Cc-h--HHHHHH----HHHHh-------cccCcceeeecccchhhhccc-----
Q psy9135 795 RKIFFKYFVTSPKDKRIVVVESVL--TP-T--VWRNTL----AKVLF-------KHYEVLSLLYVPSHLVSLCTL----- 853 (1107)
Q Consensus 795 ~~~~~~~L~~~~~~~~vll~e~~~--~~-~--~~re~l----~eiLF-------E~~~vpsv~~~~~~~lalya~----- 853 (1107)
.|++. .-+..+.+..+++..|.. .. . ..++.+ ..+.. +.+.+..+.+.||++.|.|..
T Consensus 83 ~haL~-~~G~~~~~V~lvvGLPl~~y~~~~~~~~~~~i~rk~~n~~~~v~~~g~~~i~I~~V~V~PQ~~~A~~~~~~~~~ 161 (318)
T PF06406_consen 83 HHALL-KAGLEPQDVDLVVGLPLSEYYDQDKQKNEENIERKKENLMRPVELNGGYTITIKDVEVFPQSVGAVFDALMDLD 161 (318)
T ss_dssp HHHHH-HHS--SSEEEEEEEE-HHHHB-TTSSB-HHHHHHHHHHTTS-EEETTB---EEEEEEEEESSHHHHHHHHHTS-
T ss_pred HHHHH-HcCCCCCCeEEEecCCHHHHHhhhhhhHHHHHHhhhcccccceeecCceeEEEeeEEEEcccHHHHHHHHHhhc
Confidence 67774 346777777788887732 11 1 112222 12221 145578999999999998873
Q ss_pred CCceEEEEEcCCCceEEEEEEcCEeeccceE-EEeccchHHHHHHHHHHHHhh
Q psy9135 854 GVNTGLVLDIGYSEATLLPVYEGVPVLCAWK-DLSLGGGQSVESHIRSLLIDE 905 (1107)
Q Consensus 854 g~~tglVVDiG~~~T~v~PV~dG~~l~~~~~-~~~~G~G~~lt~~L~~lL~~~ 905 (1107)
...+-+|||+|+.+|.++-|.++.+..+... ..+.| -..+.+.+.+.|...
T Consensus 162 ~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~G-vs~~~~~I~~~l~~~ 213 (318)
T PF06406_consen 162 EDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIG-VSDLYDAIAQALRSA 213 (318)
T ss_dssp TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSS-THHHHHHHHHHTT--
T ss_pred ccCcEEEEEcCCCeEEeeeecCCccccchhccCCchh-HHHHHHHHHHHHHHh
Confidence 2357899999999999998887655444433 34678 899999999988764
No 104
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=94.32 E-value=0.089 Score=61.91 Aligned_cols=107 Identities=16% Similarity=0.142 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhhccccCCCC--CeEEEEecCCCcHHHHHHHHHHH---HhhcCcceEEEecchhhhhccCC-------
Q psy9135 93 YGLLIEFIRKIFFKYFVTSPKD--KRIVVVESVLTPTVWRNTLAKVL---FKHYEVLSLLYVPSHLVSLCTLG------- 160 (1107)
Q Consensus 93 ~~~le~i~~~~~~~~L~~~~~~--~~vllte~~~~~~~~re~l~eil---FE~~~vpsv~~~~~~lls~y~~g------- 160 (1107)
-+.+.++.+.-| ++-++.+++ .-+.++--..+..++-++..+-+ -..|=|...-+-.+++++.+++|
T Consensus 65 ~~~i~~~V~~ey-~~Agi~~~die~~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva~~ASg~avLseE 143 (475)
T PRK10719 65 EAAIKELIEEEY-QKAGIAPESIDSGAVIITGETARKENAREVVMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSEE 143 (475)
T ss_pred HHHHHHHHHHHH-HHcCCCHHHccccEEEEEechhHHHHHHHHHHHhcccccceeeeccCccHHHhhhHHHhhHHHhhhh
Confidence 355677777766 556676643 33333333333344433333321 11111111112222223333332
Q ss_pred -CceEEEEEeCCCceEEEEeecCEecccceEEecccHHHHHHH
Q psy9135 161 -VNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAH 202 (1107)
Q Consensus 161 -~~tglVVDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~~ 202 (1107)
....++||||+++|+++-+.+|.+... ..+++||+++|.-
T Consensus 144 ke~gVa~IDIGgGTT~iaVf~~G~l~~T--~~l~vGG~~IT~D 184 (475)
T PRK10719 144 RNTRVLNIDIGGGTANYALFDAGKVIDT--ACLNVGGRLIETD 184 (475)
T ss_pred ccCceEEEEeCCCceEEEEEECCEEEEE--EEEecccceEEEC
Confidence 257899999999999999999998865 7899999998865
No 105
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=94.25 E-value=1.6 Score=50.78 Aligned_cols=79 Identities=11% Similarity=0.066 Sum_probs=54.5
Q ss_pred chHHHHHHHHHHhcccCcceeeecccchh--hhcc--------c-CCc-eEEEEEcCCCceEEEEEEcCEeeccceEEEe
Q psy9135 820 PTVWRNTLAKVLFKHYEVLSLLYVPSHLV--SLCT--------L-GVN-TGLVLDIGYSEATLLPVYEGVPVLCAWKDLS 887 (1107)
Q Consensus 820 ~~~~re~l~eiLFE~~~vpsv~~~~~~~l--alya--------~-g~~-tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~ 887 (1107)
++...+.+.++ |+..|+.-..+..++++ -++. . ... +.++||+|+..|+++-+.+|.++ ..+.++
T Consensus 141 ~~~~v~~~~~~-~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~--~~r~i~ 217 (348)
T TIGR01175 141 RKEVVDSRLHA-LKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRML--FTREVP 217 (348)
T ss_pred cHHHHHHHHHH-HHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEE--EEEEee
Confidence 56666667666 45555544444444433 3332 1 122 48899999999999999999877 467899
Q ss_pred ccchHHHHHHHHHHH
Q psy9135 888 LGGGQSVESHIRSLL 902 (1107)
Q Consensus 888 ~G~G~~lt~~L~~lL 902 (1107)
+| |.++++.+.+.+
T Consensus 218 ~G-~~~i~~~i~~~~ 231 (348)
T TIGR01175 218 FG-TRQLTSELSRAY 231 (348)
T ss_pred ch-HHHHHHHHHHHc
Confidence 99 999998886554
No 106
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=93.35 E-value=7.5 Score=44.65 Aligned_cols=45 Identities=27% Similarity=0.324 Sum_probs=38.3
Q ss_pred EEEEcCCCCccChHHHHHHHHHhhcCCCCccccccceeEEEEcCCCCCccccchhHHhhcCC
Q psy9135 479 ILLTGGTAMTPGLKYRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAAT 540 (1107)
Q Consensus 479 IvLtGG~S~ipGf~eRL~~EL~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~aW~Ggsilasl 540 (1107)
|+++||++...++..-|++.|. .+|+.+| .+++..=+||+++|+-
T Consensus 346 iv~~GGva~n~av~~ale~~lg----------------~~V~vP~-~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 346 IVLQGGVALNKAVVRALEDLLG----------------RKVIVPP-YAQLMGAIGAALIAKE 390 (396)
T ss_pred EEEECcchhhHHHHHHHHHHhC----------------CeeecCC-ccchhhHHHHHHHHhh
Confidence 9999999999999999998873 3556556 8899999999999863
No 107
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=93.15 E-value=0.32 Score=57.32 Aligned_cols=86 Identities=17% Similarity=0.023 Sum_probs=65.8
Q ss_pred hcccCcceeeecccchhhhcccC-----CceEEEEEcCCCceEEEEEEcCEeeccceEEEeccchHHHHHHHHHHHHhhc
Q psy9135 832 FKHYEVLSLLYVPSHLVSLCTLG-----VNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEI 906 (1107)
Q Consensus 832 FE~~~vpsv~~~~~~~lalya~g-----~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~ 906 (1107)
.|+-+..--.++-++++|..++= .-.+++||+|++.|++.-+.+|.+. ....+|+| |+++|+-+.+-|.
T Consensus 174 v~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~--~~~~ipvg-G~~vT~DIa~~l~--- 247 (418)
T COG0849 174 VERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALR--YTGVIPVG-GDHVTKDIAKGLK--- 247 (418)
T ss_pred HHHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEE--EEeeEeeC-ccHHHHHHHHHhC---
Confidence 35556665666666777776643 2368999999999999999999877 45679999 9999999988873
Q ss_pred ccCCCCCCCccchhhhhcccHHHHHHHHHhceeec
Q psy9135 907 KALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT 941 (1107)
Q Consensus 907 ~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c~v~ 941 (1107)
.+.+.+|+||.++....
T Consensus 248 ------------------t~~~~AE~iK~~~g~a~ 264 (418)
T COG0849 248 ------------------TPFEEAERIKIKYGSAL 264 (418)
T ss_pred ------------------CCHHHHHHHHHHcCccc
Confidence 23447999999876544
No 108
>PF10086 DUF2324: Putative membrane peptidase family (DUF2324); InterPro: IPR011397 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments).
Probab=91.55 E-value=0.14 Score=55.36 Aligned_cols=137 Identities=18% Similarity=0.189 Sum_probs=91.4
Q ss_pred cCCCeEEehhhHhHHHHHHHHHHhhhheeeee--cc---------c--chhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy9135 583 MQDPVKVIILVASAFAWLLSLLLSSIVWFVIR--YQ---------C--NIIFGVVISVLCQEAFRYILYLILQKSRGGLQ 649 (1107)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---------~--~~~~~~~~~v~~~e~~r~~~~~~~~~~~~~l~ 649 (1107)
.++.........++++|.++-.+.-..+.... +. + ....+.+++=.+||..|+..+|.+.|-....+
T Consensus 15 k~~~~~~~~f~~Ga~~F~v~~~vle~~l~~~~~~~~~~~~~~~~~~~l~~ly~~l~AGiFEE~gR~i~~k~l~kk~~~~~ 94 (223)
T PF10086_consen 15 KRKKISWKPFILGALVFFVFAQVLELPLHQIVLSPNADGLIWTSNPILYALYGGLMAGIFEETGRYIGFKYLLKKRRDWS 94 (223)
T ss_pred HhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchh
Confidence 35556666777788888877666654443321 11 1 33566778889999999999999987654333
Q ss_pred hhccccccccchhhhhhhccchhHHHHHHHHh----hhcccc--cCCCccc----------------cccCcceeeehhh
Q psy9135 650 YVSDRNTMDNTYAMAYVSGLGYGTISAAFSLL----NVLDQV--SGPGTMG----------------LKGESQYFGFTTS 707 (1107)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~g~g~g~~~~~~~~~----~~~~~~--~g~~~~~----------------~~~~~~~~~~~~~ 707 (1107)
. -|++-|+|||.+-+++.+. |.+.-+ --.|+.- ...-|...++.+.
T Consensus 95 ~------------~al~~GlGhGg~Eailvg~~~~l~~~v~~~~in~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ 162 (223)
T PF10086_consen 95 D------------DALAYGLGHGGIEAILVGGLSLLNNLVLAMMINSGSLDQLLEQPAELLEQIQSALASLPPWSFLLGG 162 (223)
T ss_pred h------------HHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhhHHHHHHHHHHcCcHHHHHHHH
Confidence 2 4888999999999988765 333222 1122211 0112444667777
Q ss_pred HHHHHHHHHHHhheeeEEeccccc
Q psy9135 708 IFTCCFSLLHVFWSIVFFRGVEIK 731 (1107)
Q Consensus 708 ~~~~~~~~~~~~~~~~~f~g~~~~ 731 (1107)
+=-.+=.++|+..+++.|-|+.++
T Consensus 163 ~ERi~Al~~hi~lSvlV~~av~~~ 186 (223)
T PF10086_consen 163 VERIFALLFHIGLSVLVWYAVRQR 186 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 777788899999999999998854
No 109
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=91.52 E-value=3.2 Score=48.07 Aligned_cols=109 Identities=20% Similarity=0.264 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHhccccCCCCc-----------------eEEEEeccCCchHHHHHHHHHHhcccCcce--eeecccch
Q psy9135 787 YGLLIEFIRKIFFKYFVTSPKDK-----------------RIVVVESVLTPTVWRNTLAKVLFKHYEVLS--LLYVPSHL 847 (1107)
Q Consensus 787 ~d~le~i~~~~~~~~L~~~~~~~-----------------~vll~e~~~~~~~~re~l~eiLFE~~~vps--v~~~~~~~ 847 (1107)
.+.+++.+.+=..+++..+.++. .|+++-. ++..-+...++ |+..|..- +-+..-++
T Consensus 87 ~~el~~~I~~Ea~~~iP~~~~e~~~D~~vl~~~~~~~~~~~Vll~Aa---~k~~v~~~~~~-~~~aGL~~~~vDv~~~Al 162 (340)
T PF11104_consen 87 EKELEEAIRWEAEQYIPFPLEEVVFDYQVLGESEDGEEKMEVLLVAA---PKEIVESYVEL-FEEAGLKPVAVDVEAFAL 162 (340)
T ss_dssp HHHHHHHHHHHHGGG-SS----EEEEEEESS-GS-TTSEEEEEEEEE---EHHHHHHHHHH-HHHTT-EEEEEEEHHHHG
T ss_pred HHHHHHHHHHHHHhhCCCChhHeEEEEEEeccCCCCCCceEEEEEEE---cHHHHHHHHHH-HHHcCCceEEEeehHHHH
Confidence 45677777766666665544332 2333322 34444444444 45556543 32223333
Q ss_pred hhhccc---------CCceEEEEEcCCCceEEEEEEcCEeeccceEEEeccchHHHHHHHHHHH
Q psy9135 848 VSLCTL---------GVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLL 902 (1107)
Q Consensus 848 lalya~---------g~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL 902 (1107)
.-+|.. ...+-++||+|++.|+++-+.+|.++ -.+.+++| |+++++.+.+.+
T Consensus 163 ~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~~~--f~R~i~~G-~~~l~~~i~~~~ 223 (340)
T PF11104_consen 163 ARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQNGKPI--FSRSIPIG-GNDLTEAIAREL 223 (340)
T ss_dssp GGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEETTEEE--EEEEES-S-HHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEECCEEE--EEEEEeeC-HHHHHHHHHHhc
Confidence 334432 12345899999999999999999988 45778999 999998887765
No 110
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=91.37 E-value=1.4 Score=50.21 Aligned_cols=90 Identities=17% Similarity=0.083 Sum_probs=60.1
Q ss_pred CCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEE--ecchhhhhcc----CCCceEEEEEeCCCceEEEEeecCEeccc
Q psy9135 114 DKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLY--VPSHLVSLCT----LGVNTGLVLDIGYSEATLLPVYEGVPVLC 187 (1107)
Q Consensus 114 ~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~--~~~~lls~y~----~g~~tglVVDiG~~~T~V~PV~dG~vl~~ 187 (1107)
+..++-|. .+-.-.+++.+.+.+.+..|++-=.+ ..++.++..+ ....+++|+|+|.++|.++-+.+|.+..
T Consensus 72 ~i~~vaTs-a~R~A~N~~~~~~~i~~~tgi~i~visg~eEa~l~~~gv~~~~~~~~~~v~DiGGGSte~~~~~~~~~~~- 149 (300)
T TIGR03706 72 EVRAVATA-ALRDAKNGPEFLREAEAILGLPIEVISGEEEARLIYLGVAHTLPIADGLVVDIGGGSTELILGKDFEPGE- 149 (300)
T ss_pred eEEEEEcH-HHHcCCCHHHHHHHHHHHHCCCeEEeChHHHHHHHHHHHHhCCCCCCcEEEEecCCeEEEEEecCCCEeE-
Confidence 33444444 44445678888888888887653222 2334443333 1234579999999999999998887763
Q ss_pred ceEEecccHHHHHHHHHHh
Q psy9135 188 AWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 188 ~~~~~~iGG~~lt~~L~~l 206 (1107)
...+++|.-.+++.+...
T Consensus 150 -~~Sl~lG~vrl~e~f~~~ 167 (300)
T TIGR03706 150 -GVSLPLGCVRLTEQFFPD 167 (300)
T ss_pred -EEEEccceEEhHHhhCCC
Confidence 478999998888776543
No 111
>KOG0101|consensus
Probab=91.06 E-value=4 Score=50.09 Aligned_cols=91 Identities=18% Similarity=0.175 Sum_probs=69.2
Q ss_pred CeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC-------ceEEEEEeCCCceEEEEee--cCE-e
Q psy9135 115 KRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-------NTGLVLDIGYSEATLLPVY--EGV-P 184 (1107)
Q Consensus 115 ~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~-------~tglVVDiG~~~T~V~PV~--dG~-v 184 (1107)
..+++|.|......+|+.. +-.-+-.|++-+-+.++|-+++.++|. .+-+|.|.|.....|..+. +|. .
T Consensus 144 ~~aviTVPa~F~~~Qr~at-~~A~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~ 222 (620)
T KOG0101|consen 144 KKAVVTVPAYFNDSQRAAT-KDAALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFE 222 (620)
T ss_pred eeEEEEecCCcCHHHHHHH-HHHHHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhh
Confidence 5689999998888888754 445556778889999999998888763 4669999999998877654 443 1
Q ss_pred cccceEEecccHHHHHHHHHHh
Q psy9135 185 VLCAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 185 l~~~~~~~~iGG~~lt~~L~~l 206 (1107)
+.-..--.+.||.++++.|.+.
T Consensus 223 vkat~gd~~lGGedf~~~l~~h 244 (620)
T KOG0101|consen 223 VKATAGDTHLGGEDFDNKLVNH 244 (620)
T ss_pred hhhhcccccccchhhhHHHHHH
Confidence 2233344789999999999888
No 112
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=90.75 E-value=7.3 Score=43.46 Aligned_cols=66 Identities=21% Similarity=0.314 Sum_probs=45.2
Q ss_pred HHHHHHHHHhccCccchhhhhccEEEEcCCCCccChHHHHHHHHHhhcCCCCccccccceeEEEEcCCCCCccccchhHH
Q psy9135 456 IATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGA 535 (1107)
Q Consensus 456 L~e~I~~sI~~~~~d~r~~L~~nIvLtGG~S~ipGf~eRL~~EL~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~aW~Ggs 535 (1107)
|.+.|...+.+.+..... |+++||...-+.+.+.|++.|++..+.. ++.+. . +|++.+..||.
T Consensus 206 la~~i~~~~~~~~~~~~~-----v~l~GGv~~~~~~~~~l~~~l~~~~~~~---------~~~~~--~-~~~~~~a~GAa 268 (271)
T PF01869_consen 206 LAELIKAVLKRLGPEKEP-----VVLSGGVFKNSPLVKALRDALKEKLPKV---------PIIIP--V-EPQYDPAYGAA 268 (271)
T ss_dssp HHHHHHHHHHTCTCCCCS-----EEEESGGGGCHHHHHHHGGGS-HHHHCC---------TCECE--C-CGSSHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCe-----EEEECCccCchHHHHHHHHHHHHhcCCC---------ceEEC--C-CCCccHHHHHH
Confidence 666777777666543222 9999999888888777777776665541 22332 2 68999999999
Q ss_pred hhc
Q psy9135 536 IFA 538 (1107)
Q Consensus 536 ila 538 (1107)
++|
T Consensus 269 llA 271 (271)
T PF01869_consen 269 LLA 271 (271)
T ss_dssp HHH
T ss_pred HhC
Confidence 886
No 113
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=90.49 E-value=1.4 Score=53.81 Aligned_cols=86 Identities=16% Similarity=0.080 Sum_probs=59.1
Q ss_pred EEEEecCCCcHHHHHHHHHHHHhhcCcceEEE--ecchhhhhccC-----CCceEEEEEeCCCceEEEEeecCEecccce
Q psy9135 117 IVVVESVLTPTVWRNTLAKVLFKHYEVLSLLY--VPSHLVSLCTL-----GVNTGLVLDIGYSEATLLPVYEGVPVLCAW 189 (1107)
Q Consensus 117 vllte~~~~~~~~re~l~eilFE~~~vpsv~~--~~~~lls~y~~-----g~~tglVVDiG~~~T~V~PV~dG~vl~~~~ 189 (1107)
.++.-...-.-.+++.+.+-+.+..|++==.+ -.++-++.+|. ...+++|||||.++|.++-+.+|.+.. .
T Consensus 80 ~~vATsAvReA~N~~~fl~~i~~~tGl~ievIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~~--~ 157 (496)
T PRK11031 80 RVVATATLRLAVNADEFLAKAQEILGCPVQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQATS--L 157 (496)
T ss_pred EEEEeHHHHcCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCCceee--e
Confidence 34444445555667888888888888763222 34444444432 123589999999999999999988764 4
Q ss_pred EEecccHHHHHHHHH
Q psy9135 190 KDLSLGGQSVEAHIR 204 (1107)
Q Consensus 190 ~~~~iGG~~lt~~L~ 204 (1107)
..+++|.-.+++.+.
T Consensus 158 ~Sl~lG~vrl~e~f~ 172 (496)
T PRK11031 158 FSLSMGCVTWLERYF 172 (496)
T ss_pred eEEeccchHHHHHhc
Confidence 789999988776543
No 114
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=90.33 E-value=0.81 Score=54.14 Aligned_cols=153 Identities=16% Similarity=0.085 Sum_probs=82.9
Q ss_pred ceEEEecCcceEEEeccC---------CCCccEEEe--cceeccCCCCccceeecCCHHhhHHHHHHHHHHHHHhccccC
Q psy9135 737 TGVVLDIGSKYTKYGIFG---------SFQPKGFIK--SQVKDPHTNKLRNLYEYKDADDLYGLLIEFIRKIFFKYFVTS 805 (1107)
Q Consensus 737 ~~vViD~Gs~~iK~G~ag---------e~~P~~i~p--s~vg~~~~~~~~~~~~~~~~~~~~d~le~i~~~~~~~~L~~~ 805 (1107)
..|=||+||.+|+.=||- ...||..+- .++.|.. -....+.. +..-|-+.++++.+.-| +.-++.
T Consensus 7 ~SVGIDIGTsTTqlvfSrl~l~n~a~~~~vpr~~I~dkev~yrS~--i~fTPl~~-~~~ID~~~i~~~V~~ey-~~Agi~ 82 (475)
T PRK10719 7 LSVGIDIGTTTTQVIFSRLELENRASVFQVPRIEIIDKEIIYRSP--IYFTPLLK-QGEIDEAAIKELIEEEY-QKAGIA 82 (475)
T ss_pred EEEEEeccCceEEEEEEEEEEecccccccCceEEEeeeEEEEecC--ceecCCCC-CccccHHHHHHHHHHHH-HHcCCC
Confidence 468899999999988762 224554431 1111110 00011111 22234567888888776 566777
Q ss_pred CCC--ceEEEEeccCCchHHHHHHHHHH---hcccCcceeeecccchhhhcccC--------CceEEEEEcCCCceEEEE
Q psy9135 806 PKD--KRIVVVESVLTPTVWRNTLAKVL---FKHYEVLSLLYVPSHLVSLCTLG--------VNTGLVLDIGYSEATLLP 872 (1107)
Q Consensus 806 ~~~--~~vll~e~~~~~~~~re~l~eiL---FE~~~vpsv~~~~~~~lalya~g--------~~tglVVDiG~~~T~v~P 872 (1107)
|++ ..+.++--..+..++-++..+-+ -..|=|...-.--+++++.+|+| ....++||+|.+.|+++-
T Consensus 83 ~~die~~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva~~ASg~avLseEke~gVa~IDIGgGTT~iaV 162 (475)
T PRK10719 83 PESIDSGAVIITGETARKENAREVVMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSEERNTRVLNIDIGGGTANYAL 162 (475)
T ss_pred HHHccccEEEEEechhHHHHHHHHHHHhcccccceeeeccCccHHHhhhHHHhhHHHhhhhccCceEEEEeCCCceEEEE
Confidence 753 22333333333333333444321 11221111111222223333333 246789999999999999
Q ss_pred EEcCEeeccceEEEeccchHHHHH
Q psy9135 873 VYEGVPVLCAWKDLSLGGGQSVES 896 (1107)
Q Consensus 873 V~dG~~l~~~~~~~~~G~G~~lt~ 896 (1107)
+.+|.++ .....++| |+++|.
T Consensus 163 f~~G~l~--~T~~l~vG-G~~IT~ 183 (475)
T PRK10719 163 FDAGKVI--DTACLNVG-GRLIET 183 (475)
T ss_pred EECCEEE--EEEEEecc-cceEEE
Confidence 9999877 45678999 987765
No 115
>KOG0103|consensus
Probab=90.30 E-value=16 Score=44.97 Aligned_cols=93 Identities=15% Similarity=0.123 Sum_probs=69.8
Q ss_pred CCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC------------ceEEEEEeCCCceEEEEee
Q psy9135 113 KDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV------------NTGLVLDIGYSEATLLPVY 180 (1107)
Q Consensus 113 ~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~------------~tglVVDiG~~~T~V~PV~ 180 (1107)
.-.+++|..|.+....+|..++... .--|+.-+-++++.-+++.++|. .+-+-||+||+.++++-+-
T Consensus 136 ~v~DcvIavP~~FTd~qRravldAA-~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~a 214 (727)
T KOG0103|consen 136 PVSDCVIAVPSYFTDSQRRAVLDAA-RIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAA 214 (727)
T ss_pred CCCCeeEeccccccHHHHHHHHhHH-hhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeee
Confidence 4567999999999999999887653 45677888888888877777663 3478899999999887554
Q ss_pred c--CEec-ccceEEecccHHHHHHHHHHh
Q psy9135 181 E--GVPV-LCAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 181 d--G~vl-~~~~~~~~iGG~~lt~~L~~l 206 (1107)
- |..- ..+...-.+||++.++.|.+.
T Consensus 215 F~kG~lkvl~ta~D~~lGgr~fDe~L~~h 243 (727)
T KOG0103|consen 215 FTKGKLKVLATAFDRKLGGRDFDEALIDH 243 (727)
T ss_pred eccCcceeeeeecccccccchHHHHHHHH
Confidence 3 3322 222333579999999999988
No 116
>KOG0104|consensus
Probab=89.79 E-value=3.7 Score=50.62 Aligned_cols=95 Identities=17% Similarity=0.157 Sum_probs=69.9
Q ss_pred ceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccC----------CceEEEEEcCCCceEEEEEEcCEe
Q psy9135 809 KRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLG----------VNTGLVLDIGYSEATLLPVYEGVP 878 (1107)
Q Consensus 809 ~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g----------~~tglVVDiG~~~T~v~PV~dG~~ 878 (1107)
..+++|.|++.....|..+.+-- +-.|..-+++++...+++..+| .+.-+|-|+|.++|+++-|.--.+
T Consensus 159 kd~ViTVP~~F~qaeR~all~Aa-~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v 237 (902)
T KOG0104|consen 159 KDMVITVPPFFNQAERRALLQAA-QIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLV 237 (902)
T ss_pred hheEEeCCcccCHHHHHHHHHHH-HhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEee
Confidence 45899999999999999887754 2345666889998888877665 346789999999999887753221
Q ss_pred e-------ccceEEE------eccchHHHHHHHHHHHHhh
Q psy9135 879 V-------LCAWKDL------SLGGGQSVESHIRSLLIDE 905 (1107)
Q Consensus 879 l-------~~~~~~~------~~G~G~~lt~~L~~lL~~~ 905 (1107)
- ...++.. .+| |..++..|++.|.+.
T Consensus 238 ~~k~~g~~~p~i~~~gvGfd~tLG-G~e~~~rLr~~l~~~ 276 (902)
T KOG0104|consen 238 KTKEQGGKQPQIQVLGVGFDRTLG-GLEMTMRLRDHLANE 276 (902)
T ss_pred ccccccCccceEEEEeeccCCccc-hHHHHHHHHHHHHHH
Confidence 1 1123333 355 999999999998765
No 117
>PRK10854 exopolyphosphatase; Provisional
Probab=87.58 E-value=2.4 Score=52.08 Aligned_cols=85 Identities=16% Similarity=0.074 Sum_probs=58.0
Q ss_pred EEEEecCCCcHHHHHHHHHHHHhhcCcceEEE--ecchhhhhccCC-----CceEEEEEeCCCceEEEEeecCEecccce
Q psy9135 117 IVVVESVLTPTVWRNTLAKVLFKHYEVLSLLY--VPSHLVSLCTLG-----VNTGLVLDIGYSEATLLPVYEGVPVLCAW 189 (1107)
Q Consensus 117 vllte~~~~~~~~re~l~eilFE~~~vpsv~~--~~~~lls~y~~g-----~~tglVVDiG~~~T~V~PV~dG~vl~~~~ 189 (1107)
.++.-...-.-.+++.+.+-+.+..|++-=.+ -.++-++..|.- ..+++|||||.++|.++-+-+|.+.. .
T Consensus 85 ~~vATsAlReA~N~~~fl~~i~~~tGl~i~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~~~~--~ 162 (513)
T PRK10854 85 CIVGTHTLRQALNATDFLKRAEKVIPYPIEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPIL--V 162 (513)
T ss_pred EEEehHHHHcCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEecCCCeeE--e
Confidence 33444444455667888888888888763333 244444444421 24689999999999999999987654 3
Q ss_pred EEecccHHHHHHHH
Q psy9135 190 KDLSLGGQSVEAHI 203 (1107)
Q Consensus 190 ~~~~iGG~~lt~~L 203 (1107)
..+++|.-.+++.+
T Consensus 163 ~S~~lG~vrl~e~f 176 (513)
T PRK10854 163 ESRRMGCVSFAQLY 176 (513)
T ss_pred EEEecceeeHHhhh
Confidence 56699998887744
No 118
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.52 E-value=15 Score=41.65 Aligned_cols=42 Identities=21% Similarity=0.422 Sum_probs=36.5
Q ss_pred EEEEEcCCCceEEEEEEcCEeeccceEEEeccchHHHHHHHHHHH
Q psy9135 858 GLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLL 902 (1107)
Q Consensus 858 glVVDiG~~~T~v~PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL 902 (1107)
..|+|||++.|+++-+++|.++.. +..++| |+.+++.+.+..
T Consensus 195 vav~~Igat~s~l~vi~~gk~ly~--r~~~~g-~~Qlt~~i~r~~ 236 (354)
T COG4972 195 VAVFDIGATSSELLVIQDGKILYT--REVPVG-TDQLTQEIQRAY 236 (354)
T ss_pred heeeeecccceEEEEEECCeeeeE--eeccCc-HHHHHHHHHHHh
Confidence 458999999999999999999855 889999 888888777665
No 119
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=85.27 E-value=4 Score=49.90 Aligned_cols=80 Identities=18% Similarity=0.146 Sum_probs=50.0
Q ss_pred EEEeccCCchHHHHHHHHHHhcccCcceeeec---ccchhhhccc-----CCceEEEEEcCCCceEEEEEEcCEeeccce
Q psy9135 812 VVVESVLTPTVWRNTLAKVLFKHYEVLSLLYV---PSHLVSLCTL-----GVNTGLVLDIGYSEATLLPVYEGVPVLCAW 883 (1107)
Q Consensus 812 ll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~---~~~~lalya~-----g~~tglVVDiG~~~T~v~PV~dG~~l~~~~ 883 (1107)
++.-+..-.-.+++.+.+-+.+..|++ +-++ .++.++.+|. ...+++|||+|.++|.++-+-+|.+. ..
T Consensus 81 ~vATsAvReA~N~~~fl~~i~~~tGl~-ievIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~--~~ 157 (496)
T PRK11031 81 VVATATLRLAVNADEFLAKAQEILGCP-VQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQAT--SL 157 (496)
T ss_pred EEEeHHHHcCcCHHHHHHHHHHHHCCC-eEEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCCcee--ee
Confidence 333344444556677777777777765 2222 2222222221 12358999999999999998888765 45
Q ss_pred EEEeccchHHHH
Q psy9135 884 KDLSLGGGQSVE 895 (1107)
Q Consensus 884 ~~~~~G~G~~lt 895 (1107)
..+|+| .-.++
T Consensus 158 ~Sl~lG-~vrl~ 168 (496)
T PRK11031 158 FSLSMG-CVTWL 168 (496)
T ss_pred eEEecc-chHHH
Confidence 688999 65544
No 120
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=85.02 E-value=5.9 Score=45.20 Aligned_cols=29 Identities=17% Similarity=0.393 Sum_probs=25.9
Q ss_pred CCCceEEEEEeCCCceEEEEeecCEeccc
Q psy9135 159 LGVNTGLVLDIGYSEATLLPVYEGVPVLC 187 (1107)
Q Consensus 159 ~g~~tglVVDiG~~~T~V~PV~dG~vl~~ 187 (1107)
....+++++|||..+|.|+||.+|.+...
T Consensus 125 ~~~~~~I~~DmGGTTtDi~~i~~G~p~~~ 153 (318)
T TIGR03123 125 KRIPECLFVDMGSTTTDIIPIIDGEVAAK 153 (318)
T ss_pred hcCCCEEEEEcCccceeeEEecCCEeeee
Confidence 34688999999999999999999999854
No 121
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=84.44 E-value=3.4 Score=49.98 Aligned_cols=82 Identities=17% Similarity=0.062 Sum_probs=57.0
Q ss_pred cCCCcHHHHHHHHHHHHhhcCcceEEE--ecchhhhhccC----C-CceEEEEEeCCCceEEEEeecCEecccceEEecc
Q psy9135 122 SVLTPTVWRNTLAKVLFKHYEVLSLLY--VPSHLVSLCTL----G-VNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSL 194 (1107)
Q Consensus 122 ~~~~~~~~re~l~eilFE~~~vpsv~~--~~~~lls~y~~----g-~~tglVVDiG~~~T~V~PV~dG~vl~~~~~~~~i 194 (1107)
..+-.-.+++.+.+.+-+.+|++-=.+ -.++-++.+|+ + ...++|+|||.++|.++=+-+..+.. ...+++
T Consensus 82 sA~R~A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~~~~~lv~DIGGGStEl~~g~~~~~~~--~~Sl~~ 159 (492)
T COG0248 82 SALRDAPNGDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLPRKGDGLVIDIGGGSTELVLGDNFEIGL--LISLPL 159 (492)
T ss_pred HHHHcCCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCCCCCEEEEEecCCeEEEEEecCCccce--eEEeec
Confidence 344344556667777777888874444 34555555553 3 67899999999999999887766664 377889
Q ss_pred cHHHHHHHHHH
Q psy9135 195 GGQSVEAHIRR 205 (1107)
Q Consensus 195 GG~~lt~~L~~ 205 (1107)
|.-.+++.+..
T Consensus 160 G~v~lt~~~~~ 170 (492)
T COG0248 160 GCVRLTERFFP 170 (492)
T ss_pred ceEEeehhhcC
Confidence 98777766654
No 122
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=83.67 E-value=5.7 Score=45.22 Aligned_cols=85 Identities=18% Similarity=0.141 Sum_probs=52.1
Q ss_pred CCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecc---cchhhhcc----cCCceEEEEEcCCCceEEEEEEcCEee
Q psy9135 807 KDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVP---SHLVSLCT----LGVNTGLVLDIGYSEATLLPVYEGVPV 879 (1107)
Q Consensus 807 ~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~---~~~lalya----~g~~tglVVDiG~~~T~v~PV~dG~~l 879 (1107)
++..++-|. .+-.-.+++.+.+.+.+..|+. +-++. ++.+...+ ....+++|+|+|.++|.++-+.+|.+.
T Consensus 71 ~~i~~vaTs-a~R~A~N~~~~~~~i~~~tgi~-i~visg~eEa~l~~~gv~~~~~~~~~~v~DiGGGSte~~~~~~~~~~ 148 (300)
T TIGR03706 71 DEVRAVATA-ALRDAKNGPEFLREAEAILGLP-IEVISGEEEARLIYLGVAHTLPIADGLVVDIGGGSTELILGKDFEPG 148 (300)
T ss_pred CeEEEEEcH-HHHcCCCHHHHHHHHHHHHCCC-eEEeChHHHHHHHHHHHHhCCCCCCcEEEEecCCeEEEEEecCCCEe
Confidence 344444444 3334456777787777766654 33333 23332222 122457999999999999998888655
Q ss_pred ccceEEEeccchHHHHH
Q psy9135 880 LCAWKDLSLGGGQSVES 896 (1107)
Q Consensus 880 ~~~~~~~~~G~G~~lt~ 896 (1107)
....+|+| .-.+++
T Consensus 149 --~~~Sl~lG-~vrl~e 162 (300)
T TIGR03706 149 --EGVSLPLG-CVRLTE 162 (300)
T ss_pred --EEEEEccc-eEEhHH
Confidence 45789999 444443
No 123
>PRK10854 exopolyphosphatase; Provisional
Probab=81.37 E-value=5 Score=49.25 Aligned_cols=81 Identities=17% Similarity=0.128 Sum_probs=48.3
Q ss_pred EEEeccCCchHHHHHHHHHHhcccCcceeeecc---cchhhhccc-----CCceEEEEEcCCCceEEEEEEcCEeeccce
Q psy9135 812 VVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVP---SHLVSLCTL-----GVNTGLVLDIGYSEATLLPVYEGVPVLCAW 883 (1107)
Q Consensus 812 ll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~---~~~lalya~-----g~~tglVVDiG~~~T~v~PV~dG~~l~~~~ 883 (1107)
++.-+..-.-.+++.+.+-+.+..|++ +-+++ ++.++..|. ...+++|||+|.++|.++-+-+|.+.. .
T Consensus 86 ~vATsAlReA~N~~~fl~~i~~~tGl~-i~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~~~~--~ 162 (513)
T PRK10854 86 IVGTHTLRQALNATDFLKRAEKVIPYP-IEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPIL--V 162 (513)
T ss_pred EEehHHHHcCcCHHHHHHHHHHHHCCC-eEEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEecCCCeeE--e
Confidence 333334444556677777777777765 22222 222222221 124689999999999999998886543 3
Q ss_pred EEEeccchHHHHH
Q psy9135 884 KDLSLGGGQSVES 896 (1107)
Q Consensus 884 ~~~~~G~G~~lt~ 896 (1107)
...++| .-.+++
T Consensus 163 ~S~~lG-~vrl~e 174 (513)
T PRK10854 163 ESRRMG-CVSFAQ 174 (513)
T ss_pred EEEecc-eeeHHh
Confidence 455777 544444
No 124
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=79.54 E-value=8.4 Score=41.81 Aligned_cols=23 Identities=17% Similarity=0.608 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCceEEEEEEcCE
Q psy9135 855 VNTGLVLDIGYSEATLLPVYEGV 877 (1107)
Q Consensus 855 ~~tglVVDiG~~~T~v~PV~dG~ 877 (1107)
..+++.||+|...|.++||.+|.
T Consensus 129 ~dsci~VD~GSTTtDIIPi~~ge 151 (330)
T COG1548 129 KDSCILVDMGSTTTDIIPIKDGE 151 (330)
T ss_pred CCceEEEecCCcccceEeecchh
Confidence 45799999999999999999996
No 125
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=78.64 E-value=12 Score=44.56 Aligned_cols=103 Identities=14% Similarity=0.129 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHhhccccCCCC---CeEEEEecCCCcHHHHHHHHHHHHhhcC---cceEEEecchhhhhccCCC-----
Q psy9135 93 YGLLIEFIRKIFFKYFVTSPKD---KRIVVVESVLTPTVWRNTLAKVLFKHYE---VLSLLYVPSHLVSLCTLGV----- 161 (1107)
Q Consensus 93 ~~~le~i~~~~~~~~L~~~~~~---~~vllte~~~~~~~~re~l~eilFE~~~---vpsv~~~~~~lls~y~~g~----- 161 (1107)
-+.+.++.+.-| ++-++.|++ -.|++|-.. ..+++-+.+.+.|=+..| |...----++++|..|+|.
T Consensus 62 ~~al~~iv~~eY-~~Agi~p~~I~TGAVIITGET-ArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~ 139 (473)
T PF06277_consen 62 AEALKEIVEEEY-RKAGITPEDIDTGAVIITGET-ARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSK 139 (473)
T ss_pred HHHHHHHHHHHH-HHcCCCHHHCccccEEEecch-hhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhh
Confidence 466778888777 666777754 346666543 345555556666655544 1111122346677777763
Q ss_pred ---ceEEEEEeCCCceEEEEeecCEecccceEEecccHHHH
Q psy9135 162 ---NTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSV 199 (1107)
Q Consensus 162 ---~tglVVDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~l 199 (1107)
.+-+=+|||..+|.++-..+|.++.. --+++||+.+
T Consensus 140 ~~~~~V~NiDIGGGTtN~avf~~G~v~~T--~cl~IGGRLi 178 (473)
T PF06277_consen 140 EHHTVVANIDIGGGTTNIAVFDNGEVIDT--ACLDIGGRLI 178 (473)
T ss_pred hhCCeEEEEEeCCCceeEEEEECCEEEEE--EEEeeccEEE
Confidence 34455799999999999999999965 5688999754
No 126
>KOG0100|consensus
Probab=76.52 E-value=20 Score=41.25 Aligned_cols=93 Identities=19% Similarity=0.251 Sum_probs=61.5
Q ss_pred ceEEEEeccCCchHHHHHHHHH-HhcccCcceeeecccchhhhcccC------CceEEEEEcCCCceEE--EEEEcCEe-
Q psy9135 809 KRIVVVESVLTPTVWRNTLAKV-LFKHYEVLSLLYVPSHLVSLCTLG------VNTGLVLDIGYSEATL--LPVYEGVP- 878 (1107)
Q Consensus 809 ~~vll~e~~~~~~~~re~l~ei-LFE~~~vpsv~~~~~~~lalya~g------~~tglVVDiG~~~T~v--~PV~dG~~- 878 (1107)
..-+++.|......+|+..-.. ..- +..-+-+++.|.+|+.++| ..+-+|.|.|.+.-.| +.|-+|.-
T Consensus 173 ~~AVvTvPAYFNDAQrQATKDAGtIA--gLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFe 250 (663)
T KOG0100|consen 173 THAVVTVPAYFNDAQRQATKDAGTIA--GLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFE 250 (663)
T ss_pred cceEEecchhcchHHHhhhcccceec--cceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEE
Confidence 3567888888888888765432 112 3344677888888877765 4578999999998655 45556631
Q ss_pred eccceEEEeccchHHHHHHHHHHHHh
Q psy9135 879 VLCAWKDLSLGGGQSVESHIRSLLID 904 (1107)
Q Consensus 879 l~~~~~~~~~G~G~~lt~~L~~lL~~ 904 (1107)
+...--...+| |.+.++...+.+.+
T Consensus 251 VlaTnGDThLG-GEDFD~rvm~~fik 275 (663)
T KOG0100|consen 251 VLATNGDTHLG-GEDFDQRVMEYFIK 275 (663)
T ss_pred EEecCCCcccC-ccchHHHHHHHHHH
Confidence 22223345788 98888877766643
No 127
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=74.58 E-value=26 Score=41.90 Aligned_cols=162 Identities=15% Similarity=0.091 Sum_probs=95.6
Q ss_pred ceEEEecCcceEEEeccC---------CCCccEEEe--cceeccCCCCccceeecCCHHhhHHHHHHHHHHHHHhccccC
Q psy9135 737 TGVVLDIGSKYTKYGIFG---------SFQPKGFIK--SQVKDPHTNKLRNLYEYKDADDLYGLLIEFIRKIFFKYFVTS 805 (1107)
Q Consensus 737 ~~vViD~Gs~~iK~G~ag---------e~~P~~i~p--s~vg~~~~~~~~~~~~~~~~~~~~d~le~i~~~~~~~~L~~~ 805 (1107)
..|=||+||.+|+.=||. -..||..+- .++.+.. -....+.. +..-|-+.+.++.+.-| +.-++.
T Consensus 4 ~SVGIDIGTSTTQlvfSrl~l~n~a~~~~vPri~I~dkeViYrS~--I~fTPl~~-~~~ID~~al~~iv~~eY-~~Agi~ 79 (473)
T PF06277_consen 4 LSVGIDIGTSTTQLVFSRLTLENRASGFSVPRIEIVDKEVIYRSP--IYFTPLLS-QTEIDAEALKEIVEEEY-RKAGIT 79 (473)
T ss_pred EEEEEeecCCceeEEEEEeEEEeccCCCccceEEEeccEEEecCC--ccccCCCC-CCccCHHHHHHHHHHHH-HHcCCC
Confidence 357899999999987763 234665442 1111110 00011111 22234577888888777 667788
Q ss_pred CCC---ceEEEEeccCCchHHHHHHHHHHhcc---cCcceeeecccchhhhcccC--------CceEEEEEcCCCceEEE
Q psy9135 806 PKD---KRIVVVESVLTPTVWRNTLAKVLFKH---YEVLSLLYVPSHLVSLCTLG--------VNTGLVLDIGYSEATLL 871 (1107)
Q Consensus 806 ~~~---~~vll~e~~~~~~~~re~l~eiLFE~---~~vpsv~~~~~~~lalya~g--------~~tglVVDiG~~~T~v~ 871 (1107)
|++ --|+||--... +++=+.+.+.|=+. |=|..--=--++++|..++| ..+-+=+|||.+.|.++
T Consensus 80 p~~I~TGAVIITGETAr-KeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDIGGGTtN~a 158 (473)
T PF06277_consen 80 PEDIDTGAVIITGETAR-KENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSKEHHTVVANIDIGGGTTNIA 158 (473)
T ss_pred HHHCccccEEEecchhh-hhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhhhhCCeEEEEEeCCCceeEE
Confidence 854 35777754443 33333344444332 22322222235677777776 23444579999999999
Q ss_pred EEEcCEeeccceEEEeccchH-----------HHHHHHHHHHHhhc
Q psy9135 872 PVYEGVPVLCAWKDLSLGGGQ-----------SVESHIRSLLIDEI 906 (1107)
Q Consensus 872 PV~dG~~l~~~~~~~~~G~G~-----------~lt~~L~~lL~~~~ 906 (1107)
-.-+|.++.. .-+++| |+ .+...++.++.+.+
T Consensus 159 vf~~G~v~~T--~cl~IG-GRLi~~d~~g~i~yis~~~~~l~~~~~ 201 (473)
T PF06277_consen 159 VFDNGEVIDT--ACLDIG-GRLIEFDPDGRITYISPPIQRLLEELG 201 (473)
T ss_pred EEECCEEEEE--EEEeec-cEEEEEcCCCcEEEECHHHHHHHHHhC
Confidence 9999999855 447888 76 34556666766665
No 128
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=74.17 E-value=20 Score=41.08 Aligned_cols=29 Identities=17% Similarity=0.393 Sum_probs=25.5
Q ss_pred cCCceEEEEEcCCCceEEEEEEcCEeecc
Q psy9135 853 LGVNTGLVLDIGYSEATLLPVYEGVPVLC 881 (1107)
Q Consensus 853 ~g~~tglVVDiG~~~T~v~PV~dG~~l~~ 881 (1107)
....++|++|+|.++|.|+||.+|.+...
T Consensus 125 ~~~~~~I~~DmGGTTtDi~~i~~G~p~~~ 153 (318)
T TIGR03123 125 KRIPECLFVDMGSTTTDIIPIIDGEVAAK 153 (318)
T ss_pred hcCCCEEEEEcCccceeeEEecCCEeeee
Confidence 34678999999999999999999998754
No 129
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=73.71 E-value=25 Score=38.69 Aligned_cols=134 Identities=16% Similarity=0.047 Sum_probs=67.1
Q ss_pred EEEecCcceEEEeccCCCCccEEEecceeccCCCCccceeecCCHHhhHHHHHHHHHHHHHhccccCCCCceEEEEeccC
Q psy9135 739 VVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYEYKDADDLYGLLIEFIRKIFFKYFVTSPKDKRIVVVESVL 818 (1107)
Q Consensus 739 vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~~~d~le~i~~~~~~~~L~~~~~~~~vll~e~~~ 818 (1107)
+-||+||.++|+..-. +. + ++-+... +....|+...+.+..++ +..+.++.+..-+.+-...
T Consensus 3 lGIDiGtts~K~vl~d-~g-~-il~~~~~--------------~~~~~~~~~~~~l~~~~-~~~~~~~~~i~~i~~Tg~~ 64 (248)
T TIGR00241 3 LGIDSGSTTTKMVLME-DG-K-VIGYKWL--------------DTTPVIEETARAILEAL-KEAGIGLEPIDKIVATGYG 64 (248)
T ss_pred EEEEcChhheEEEEEc-CC-E-EEEEEEe--------------cCCCCHHHHHHHHHHHH-HHcCCChhheeEEEEECCC
Confidence 5599999999998774 22 2 2221111 11224777777777777 4455554443322221111
Q ss_pred CchHHHHHHHHHHhcccCcceeeecccchhhhcccCCceEEEEEcCCCceEEEEEEcCEeeccce-EEEeccchHHHHHH
Q psy9135 819 TPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAW-KDLSLGGGQSVESH 897 (1107)
Q Consensus 819 ~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~~tglVVDiG~~~T~v~PV~dG~~l~~~~-~~~~~G~G~~lt~~ 897 (1107)
|..+ .|-...+..+...... +.+-... ...|||||.+.|.++-+.+|.+..-.. ..+..| +....+.
T Consensus 65 -----~~~v---~~~~~~~~ei~~~~~g--~~~~~~~-~~~vidiGgqd~k~i~~~~g~~~~~~~n~~ca~G-tg~f~e~ 132 (248)
T TIGR00241 65 -----RHKV---GFADKIVTEISCHGKG--ANYLAPE-ARGVIDIGGQDSKVIKIDDGKVDDFTMNDKCAAG-TGRFLEV 132 (248)
T ss_pred -----cccc---cccCCceEEhhHHHHH--HHHHCCC-CCEEEEecCCeeEEEEECCCcEeeeeecCccccc-ccHHHHH
Confidence 1111 1211112222111111 1122222 345999999999999999998763322 335667 3333444
Q ss_pred HHHHH
Q psy9135 898 IRSLL 902 (1107)
Q Consensus 898 L~~lL 902 (1107)
+.+.|
T Consensus 133 ~a~~l 137 (248)
T TIGR00241 133 TARRL 137 (248)
T ss_pred HHHHc
Confidence 43333
No 130
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=73.69 E-value=3.2 Score=43.24 Aligned_cols=62 Identities=21% Similarity=0.248 Sum_probs=53.2
Q ss_pred HhcccCcceeeecccchhhhcccCCceEEEEEcCCCceEEEEEEcCEeeccceEEEeccchHHHH
Q psy9135 831 LFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVE 895 (1107)
Q Consensus 831 LFE~~~vpsv~~~~~~~lalya~g~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~G~G~~lt 895 (1107)
+.|.-+...++.+..|.++.+-.+.+.|.|||+|.+.|-|.-+-+|.++..+ .-+-| |.+++
T Consensus 115 ViESAGlevl~vlDEPTAaa~vL~l~dg~VVDiGGGTTGIsi~kkGkViy~A--DEpTG-GtHmt 176 (277)
T COG4820 115 VIESAGLEVLHVLDEPTAAADVLQLDDGGVVDIGGGTTGISIVKKGKVIYSA--DEPTG-GTHMT 176 (277)
T ss_pred eecccCceeeeecCCchhHHHHhccCCCcEEEeCCCcceeEEEEcCcEEEec--cCCCC-ceeEE
Confidence 3477888889999999999999999999999999999999999999988653 34667 77665
No 131
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=71.27 E-value=16 Score=41.07 Aligned_cols=89 Identities=20% Similarity=0.216 Sum_probs=62.5
Q ss_pred eEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEe--cchhhhhcc----C-CCceEEEEEeCCCceEEEEeecCEecccc
Q psy9135 116 RIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYV--PSHLVSLCT----L-GVNTGLVLDIGYSEATLLPVYEGVPVLCA 188 (1107)
Q Consensus 116 ~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~--~~~lls~y~----~-g~~tglVVDiG~~~T~V~PV~dG~vl~~~ 188 (1107)
-.++.-..+-.-.+++.+.+.+.+..|++--.+. .++.++..| . ...+++|+|+|.++|.++.+.+|.+...
T Consensus 59 i~~vATsA~R~A~N~~~~~~~i~~~tGi~i~iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~~~- 137 (285)
T PF02541_consen 59 IRAVATSALREAKNSDEFLDRIKKETGIDIEIISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFENGKVVFS- 137 (285)
T ss_dssp EEEEEEHHHHHSTTHHHHHHHHHHHHSS-EEEE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEETTEEEEE-
T ss_pred EEEEhhHHHHhCcCHHHHHHHHHHHhCCceEEecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEECCeeeEe-
Confidence 3344444555566788889999999998644442 333333332 3 6788999999999999999999998865
Q ss_pred eEEecccHHHHHHHHHHh
Q psy9135 189 WKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 189 ~~~~~iGG~~lt~~L~~l 206 (1107)
..+|+|.-.+++.+...
T Consensus 138 -~Sl~lG~vrl~e~~~~~ 154 (285)
T PF02541_consen 138 -QSLPLGAVRLTERFFKS 154 (285)
T ss_dssp -EEES--HHHHHHHHSGC
T ss_pred -eeeehHHHHHHHHHhcc
Confidence 78999999988877554
No 132
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=68.66 E-value=4.5 Score=45.77 Aligned_cols=33 Identities=18% Similarity=0.446 Sum_probs=23.3
Q ss_pred hhc-cCCCceEEEEEeCCCceEEEEeecCEeccc
Q psy9135 155 SLC-TLGVNTGLVLDIGYSEATLLPVYEGVPVLC 187 (1107)
Q Consensus 155 s~y-~~g~~tglVVDiG~~~T~V~PV~dG~vl~~ 187 (1107)
+.+ ..|..++++||||..+|+|++|.||.+...
T Consensus 69 a~~~~~g~~~~i~vDmGGTTtDi~~i~~G~p~~~ 102 (290)
T PF01968_consen 69 AAARLTGLENAIVVDMGGTTTDIALIKDGRPEIS 102 (290)
T ss_dssp HHH--HT-SSEEEEEE-SS-EEEEEEETTEE---
T ss_pred hhhhcCCCCCEEEEeCCCCEEEEEEEECCeeecc
Confidence 344 458899999999999999999999999743
No 133
>PRK13324 pantothenate kinase; Reviewed
Probab=64.55 E-value=46 Score=37.00 Aligned_cols=18 Identities=28% Similarity=0.606 Sum_probs=15.3
Q ss_pred eEEEecCcceEEEeccCC
Q psy9135 738 GVVLDIGSKYTKYGIFGS 755 (1107)
Q Consensus 738 ~vViD~Gs~~iK~G~age 755 (1107)
-+.||+|..+||.|+..+
T Consensus 2 iL~iDiGNT~ik~gl~~~ 19 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDG 19 (258)
T ss_pred EEEEEeCCCceEEEEEEC
Confidence 378999999999998754
No 134
>PRK13321 pantothenate kinase; Reviewed
Probab=63.84 E-value=37 Score=37.63 Aligned_cols=18 Identities=28% Similarity=0.661 Sum_probs=15.8
Q ss_pred EEEecCcceEEEeccCCC
Q psy9135 739 VVLDIGSKYTKYGIFGSF 756 (1107)
Q Consensus 739 vViD~Gs~~iK~G~age~ 756 (1107)
+.||+|..++|+|+..++
T Consensus 3 L~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 3 LLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEECCCeEEEEEEECC
Confidence 789999999999988654
No 135
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=63.49 E-value=29 Score=33.65 Aligned_cols=40 Identities=25% Similarity=0.433 Sum_probs=31.2
Q ss_pred EEEEeCCCceEEEEeecCEecccceEEeccc--------HHHHH--HHHHHh
Q psy9135 165 LVLDIGYSEATLLPVYEGVPVLCAWKDLSLG--------GQSVE--AHIRRG 206 (1107)
Q Consensus 165 lVVDiG~~~T~V~PV~dG~vl~~~~~~~~iG--------G~~lt--~~L~~l 206 (1107)
++||+|.++|.++-..+|.... +.-+++| |.+++ +-+.+-
T Consensus 2 ~~iDiGs~~~~~~i~~~~~~~~--~~vl~~g~~~s~gi~~g~Itd~~~i~~~ 51 (120)
T PF14450_consen 2 VVIDIGSSKTKVAIAEDGSDGY--IRVLGVGEVPSKGIKGGHITDIEDISKA 51 (120)
T ss_dssp EEEEE-SSSEEEEEEETTEEEE--EEEES----------HHHHH--HHHHHH
T ss_pred EEEEcCCCcEEEEEEEeCCCCc--EEEEEEecccccccCCCEEEEHHHHHHH
Confidence 6899999999999888877765 6789999 99999 777766
No 136
>KOG0103|consensus
Probab=62.86 E-value=95 Score=38.66 Aligned_cols=98 Identities=16% Similarity=0.157 Sum_probs=72.5
Q ss_pred CCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCC------------ceEEEEEcCCCceEEEEEE
Q psy9135 807 KDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV------------NTGLVLDIGYSEATLLPVY 874 (1107)
Q Consensus 807 ~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~------------~tglVVDiG~~~T~v~PV~ 874 (1107)
.-.+++|..|.+.+..+|..+++.. ...|+.-+-+++...+++.++|. .+-+.||+||+.++++-+-
T Consensus 136 ~v~DcvIavP~~FTd~qRravldAA-~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~a 214 (727)
T KOG0103|consen 136 PVSDCVIAVPSYFTDSQRRAVLDAA-RIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAA 214 (727)
T ss_pred CCCCeeEeccccccHHHHHHHHhHH-hhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeee
Confidence 4457899999999999999888765 34677788888888887777662 2478899999999887554
Q ss_pred c--CEe-eccceEEEeccchHHHHHHHHHHHHhhc
Q psy9135 875 E--GVP-VLCAWKDLSLGGGQSVESHIRSLLIDEI 906 (1107)
Q Consensus 875 d--G~~-l~~~~~~~~~G~G~~lt~~L~~lL~~~~ 906 (1107)
- |.. +..+...-.+| |++.++.|.+.+.+.-
T Consensus 215 F~kG~lkvl~ta~D~~lG-gr~fDe~L~~hfa~ef 248 (727)
T KOG0103|consen 215 FTKGKLKVLATAFDRKLG-GRDFDEALIDHFAKEF 248 (727)
T ss_pred eccCcceeeeeecccccc-cchHHHHHHHHHHHHh
Confidence 2 321 12223334789 9999999999987653
No 137
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=62.54 E-value=7 Score=45.49 Aligned_cols=53 Identities=21% Similarity=0.296 Sum_probs=41.5
Q ss_pred hhhccEEEEcCCCCccChHHHHHHHHHhhcCCCCccccccceeEEEEcCCCCCccccchhHHhhc
Q psy9135 474 PLAENILLTGGTAMTPGLKYRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFA 538 (1107)
Q Consensus 474 ~L~~nIvLtGG~S~ipGf~eRL~~EL~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~aW~Ggsila 538 (1107)
.+-..|+++||.++-+|+...|+++|....+. .+|+.++ ++++..=+||+++|
T Consensus 380 ~i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~-----------~~V~Vp~-~pq~~GALGAAL~a 432 (432)
T TIGR02259 380 GITDQFTFTGGVAKNEAAVKELRKLIKENYGE-----------VQINIDP-DSIYTGALGASEFA 432 (432)
T ss_pred CCCCCEEEECCccccHHHHHHHHHHHccccCC-----------CeEecCC-CccHHHHHHHHHhC
Confidence 34578999999999999999999998654331 2444445 89999999999875
No 138
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=61.68 E-value=40 Score=37.11 Aligned_cols=18 Identities=11% Similarity=0.385 Sum_probs=15.4
Q ss_pred EEEecCcceEEEeccCCC
Q psy9135 739 VVLDIGSKYTKYGIFGSF 756 (1107)
Q Consensus 739 vViD~Gs~~iK~G~age~ 756 (1107)
++||+|..++|+|+..++
T Consensus 2 L~iDiGNT~i~~g~~~~~ 19 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSGN 19 (243)
T ss_pred EEEEECCCcEEEEEEECC
Confidence 689999999999977654
No 139
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=59.44 E-value=16 Score=44.28 Aligned_cols=66 Identities=17% Similarity=0.083 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHhcccCcceeeec---ccchhhhccc----C-CceEEEEEcCCCceEEEEEEcCEeeccceEEEecc
Q psy9135 821 TVWRNTLAKVLFKHYEVLSLLYV---PSHLVSLCTL----G-VNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLG 889 (1107)
Q Consensus 821 ~~~re~l~eiLFE~~~vpsv~~~---~~~~lalya~----g-~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~G 889 (1107)
-.+++...+.+-+.++++ +-++ .++-++.+|+ + ...++|+|+|.++|.++=+-+..+. ....+|+|
T Consensus 87 A~N~~eFl~rv~~~~G~~-ievIsGeeEArl~~lGv~~~~~~~~~~lv~DIGGGStEl~~g~~~~~~--~~~Sl~~G 160 (492)
T COG0248 87 APNGDEFLARVEKELGLP-IEVISGEEEARLIYLGVASTLPRKGDGLVIDIGGGSTELVLGDNFEIG--LLISLPLG 160 (492)
T ss_pred CCCHHHHHHHHHHHhCCc-eEEeccHHHHHHHHHHHHhcCCCCCCEEEEEecCCeEEEEEecCCccc--eeEEeecc
Confidence 334455555666666765 3332 3444444432 2 6679999999999999877655443 34556666
No 140
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=59.13 E-value=8 Score=43.80 Aligned_cols=31 Identities=19% Similarity=0.444 Sum_probs=23.3
Q ss_pred hhc-ccCCceEEEEEcCCCceEEEEEEcCEee
Q psy9135 849 SLC-TLGVNTGLVLDIGYSEATLLPVYEGVPV 879 (1107)
Q Consensus 849 aly-a~g~~tglVVDiG~~~T~v~PV~dG~~l 879 (1107)
+.+ ..|..++++||+|.++|.|.+|.||.|.
T Consensus 69 a~~~~~g~~~~i~vDmGGTTtDi~~i~~G~p~ 100 (290)
T PF01968_consen 69 AAARLTGLENAIVVDMGGTTTDIALIKDGRPE 100 (290)
T ss_dssp HHH--HT-SSEEEEEE-SS-EEEEEEETTEE-
T ss_pred hhhhcCCCCCEEEEeCCCCEEEEEEEECCeee
Confidence 344 5688899999999999999999999985
No 141
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=58.63 E-value=67 Score=35.48 Aligned_cols=119 Identities=18% Similarity=0.158 Sum_probs=62.1
Q ss_pred eEEEecCcceEEEeccCCCCccEEEecceeccCCCCccceeecCCHHhhHHHHHHHHHHHHHhccccCCCCceEEEEecc
Q psy9135 738 GVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYEYKDADDLYGLLIEFIRKIFFKYFVTSPKDKRIVVVESV 817 (1107)
Q Consensus 738 ~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~~~d~le~i~~~~~~~~L~~~~~~~~vll~e~~ 817 (1107)
-++||+|..+++.|+-.+......+.... + .....|.+...+...+... ...+-+-++.-+.
T Consensus 2 ~L~iDiGNT~~~~a~~~~~~~~~~~r~~t--------------~-~~~~~del~~~~~~l~~~~---~~~~~~~~~issv 63 (251)
T COG1521 2 LLLIDIGNTRIVFALYEGGKVVQTWRLAT--------------E-DLLTEDELGLQLHNLFDGN---SVRDIDGIVISSV 63 (251)
T ss_pred eEEEEeCCCeEEEEEecCCeEEEEEeecc--------------c-ccccHHHHHHHHHHHhccc---cccccccceeecc
Confidence 37899999999999988544333322110 0 1111345555555555322 2222222222222
Q ss_pred CCchHHHHHHHHHHhcccCcceeee-cccc------------------hhhhcccC---CceEEEEEcCCCceEEEEEEc
Q psy9135 818 LTPTVWRNTLAKVLFKHYEVLSLLY-VPSH------------------LVSLCTLG---VNTGLVLDIGYSEATLLPVYE 875 (1107)
Q Consensus 818 ~~~~~~re~l~eiLFE~~~vpsv~~-~~~~------------------~lalya~g---~~tglVVDiG~~~T~v~PV~d 875 (1107)
- +.....+..++.|.|++...+. .+.. +++++++. ...++|||+|...| +.-|-+
T Consensus 64 v--p~~~~~~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~~p~elG~DR~~n~vaA~~~~~~~~vVVD~GTA~T-id~v~~ 140 (251)
T COG1521 64 V--PPLGIFLEAVLKEYFKVKPLVVISPKQLLGIRVLYDNPEELGADRIANAVAAYHKYGKAVVVVDFGTATT-IDLVDE 140 (251)
T ss_pred C--ccHHHHHHHHHHHHhccCceeeechhhccCCcccCCChhhhcHHHHHHHHHHHHHcCCcEEEEEcCCeEE-EEEEcC
Confidence 2 4555666667777777666322 2211 22333332 33489999998876 555544
Q ss_pred CE
Q psy9135 876 GV 877 (1107)
Q Consensus 876 G~ 877 (1107)
|-
T Consensus 141 ~~ 142 (251)
T COG1521 141 GG 142 (251)
T ss_pred CC
Confidence 43
No 142
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=53.24 E-value=89 Score=36.89 Aligned_cols=141 Identities=18% Similarity=0.170 Sum_probs=73.2
Q ss_pred ceEEEecCcceEEEeccCCCCccEEEecceeccCCCCccceeecCCHHhhHHHHHHHHHHHHHhccccCCCCceEEEEec
Q psy9135 737 TGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYEYKDADDLYGLLIEFIRKIFFKYFVTSPKDKRIVVVES 816 (1107)
Q Consensus 737 ~~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~~~d~le~i~~~~~~~~L~~~~~~~~vll~e~ 816 (1107)
-.+=||.||.++|+-+-.+ . . ++-+.+. +. . ..-+..+++++.++ +..++..++..-+.+
T Consensus 145 ~~lGIDiGSTttK~Vl~dd-~-~-Ii~~~~~-~t---------~----~~~~~a~~~l~~~l-~~~Gl~~~di~~i~~-- 204 (404)
T TIGR03286 145 LTLGIDSGSTTTKAVVMED-N-E-VIGTGWV-PT---------T----KVIESAEEAVERAL-EEAGVSLEDVEAIGT-- 204 (404)
T ss_pred EEEEEEcChhheeeEEEcC-C-e-EEEEEEe-ec---------c----cHHHHHHHHHHHHH-HHcCCCccceeEEEe--
Confidence 4788999999999877543 2 3 3322111 10 0 11244666777666 445555444332222
Q ss_pred cCCchHHHHHHHHHHh-cccCcceeeecccchhhhcccCCceEEEEEcCCCceEEEEEEcCEeeccceEEEec-cchHHH
Q psy9135 817 VLTPTVWRNTLAKVLF-KHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSL-GGGQSV 894 (1107)
Q Consensus 817 ~~~~~~~re~l~eiLF-E~~~vpsv~~~~~~~lalya~g~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~-G~G~~l 894 (1107)
+-.-|..+ ..+| -.+.+.-+...-.....++..-.....|+|||.+-+-++-+-+|.+..-..-..-- |+|++|
T Consensus 205 ---TGyGR~~i-~~~~~ad~iv~EItaha~GA~~L~p~~~~v~TIIDIGGQDsK~I~l~~G~v~dF~MNdkCAAGTGrFL 280 (404)
T TIGR03286 205 ---TGYGRFTI-GEHFGADLIQEELTVNSKGAVYLADKQEGPATVIDIGGMDNKAISVWDGIPDNFTMGGICAGASGRFL 280 (404)
T ss_pred ---eeecHHHH-hhhcCCCceEEEEhhHHHHHHHhcccCCCCcEEEEeCCCceEEEEEcCCceeeEEEcCcccccCcHHH
Confidence 33345544 2333 12222222222222222222223468999999999999888888764332222222 258888
Q ss_pred HHHHHHH
Q psy9135 895 ESHIRSL 901 (1107)
Q Consensus 895 t~~L~~l 901 (1107)
...-+.|
T Consensus 281 E~~A~~L 287 (404)
T TIGR03286 281 EMTAKRL 287 (404)
T ss_pred HHHHHHh
Confidence 7655444
No 143
>PRK13324 pantothenate kinase; Reviewed
Probab=52.60 E-value=1.3e+02 Score=33.56 Aligned_cols=15 Identities=20% Similarity=0.350 Sum_probs=12.3
Q ss_pred CceEEEEEeCCCceE
Q psy9135 161 VNTGLVLDIGYSEAT 175 (1107)
Q Consensus 161 ~~tglVVDiG~~~T~ 175 (1107)
...+||||+|...|-
T Consensus 123 ~~~~iViD~GTA~T~ 137 (258)
T PRK13324 123 NKDLLIIDLGTATTF 137 (258)
T ss_pred CCCEEEEEcCCceEE
Confidence 346899999998875
No 144
>PRK13317 pantothenate kinase; Provisional
Probab=50.67 E-value=17 Score=40.88 Aligned_cols=72 Identities=14% Similarity=0.143 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHhccCc-cchhhhhccEEEEc-CCCCccChHHHHHHHHHhhcCCCCccccccceeEEEEcCCCCCccccc
Q psy9135 454 LNIATIILDSLLKTGR-DMKKPLAENILLTG-GTAMTPGLKYRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAW 531 (1107)
Q Consensus 454 ~gL~e~I~~sI~~~~~-d~r~~L~~nIvLtG-G~S~ipGf~eRL~~EL~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~aW 531 (1107)
.||..+|.+.|..+-. -.|..-.++|+++| |.+..|++.++|.+.++.. ..+++-++ +++|..=
T Consensus 200 asl~~~v~~~I~~lA~~~ar~~~~~~Ivf~G~gla~n~~l~~~l~~~l~~~-------------~~~~~~p~-~~~~~gA 265 (277)
T PRK13317 200 AGVIGLVGEVITTLSIQAAREKNIENIVYIGSTLTNNPLLQEIIESYTKLR-------------NCTPIFLE-NGGYSGA 265 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEEECcccccCHHHHHHHHHHHhcC-------------CceEEecC-CCchhHH
Confidence 3666666666654311 12333347999999 7999999999999876421 23444444 7899999
Q ss_pred hhHHhhcC
Q psy9135 532 LGGAIFAA 539 (1107)
Q Consensus 532 ~Ggsilas 539 (1107)
+||.+++.
T Consensus 266 lGAaL~a~ 273 (277)
T PRK13317 266 IGALLLAT 273 (277)
T ss_pred HHHHHHhh
Confidence 99998864
No 145
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=50.14 E-value=29 Score=37.07 Aligned_cols=19 Identities=26% Similarity=0.621 Sum_probs=15.5
Q ss_pred EEEecCcceEEEeccCCCC
Q psy9135 739 VVLDIGSKYTKYGIFGSFQ 757 (1107)
Q Consensus 739 vViD~Gs~~iK~G~age~~ 757 (1107)
++||+|...+|.|+..++.
T Consensus 2 L~iDiGNT~ik~~~~~~~~ 20 (206)
T PF03309_consen 2 LLIDIGNTRIKWALFDGDK 20 (206)
T ss_dssp EEEEE-SSEEEEEEEETTE
T ss_pred EEEEECCCeEEEEEEECCE
Confidence 6899999999999986653
No 146
>PRK13321 pantothenate kinase; Reviewed
Probab=49.59 E-value=1.3e+02 Score=33.40 Aligned_cols=18 Identities=28% Similarity=0.661 Sum_probs=13.6
Q ss_pred EEEecCCceeEEeeecCc
Q psy9135 45 VVLDIGSKYTKYGIFGSF 62 (1107)
Q Consensus 45 iViD~GS~~~K~G~age~ 62 (1107)
+.||+|..++|+|...++
T Consensus 3 L~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 3 LLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEECCCeEEEEEEECC
Confidence 568888888888887643
No 147
>KOG0101|consensus
Probab=49.04 E-value=51 Score=40.85 Aligned_cols=95 Identities=17% Similarity=0.183 Sum_probs=68.7
Q ss_pred ceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccC-------CceEEEEEcCCCceEEEEEE--cCE-e
Q psy9135 809 KRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLG-------VNTGLVLDIGYSEATLLPVY--EGV-P 878 (1107)
Q Consensus 809 ~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g-------~~tglVVDiG~~~T~v~PV~--dG~-~ 878 (1107)
..++++.|......+|..+-+-. .-.|++-+-+++.|.++..++| ..+-+|.|.|.....|.++. +|. .
T Consensus 144 ~~aviTVPa~F~~~Qr~at~~A~-~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~ 222 (620)
T KOG0101|consen 144 KKAVVTVPAYFNDSQRAATKDAA-LIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFE 222 (620)
T ss_pred eeEEEEecCCcCHHHHHHHHHHH-HhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhh
Confidence 45889999888888887665543 2356678899999999988876 34569999999998877765 342 2
Q ss_pred eccceEEEeccchHHHHHHHHHHHHhh
Q psy9135 879 VLCAWKDLSLGGGQSVESHIRSLLIDE 905 (1107)
Q Consensus 879 l~~~~~~~~~G~G~~lt~~L~~lL~~~ 905 (1107)
+....-..++| |.++++.|.+.+...
T Consensus 223 vkat~gd~~lG-Gedf~~~l~~h~~~e 248 (620)
T KOG0101|consen 223 VKATAGDTHLG-GEDFDNKLVNHFAAE 248 (620)
T ss_pred hhhhccccccc-chhhhHHHHHHHHHH
Confidence 23334446899 988888777776543
No 148
>PRK13318 pantothenate kinase; Reviewed
Probab=48.49 E-value=98 Score=34.30 Aligned_cols=18 Identities=22% Similarity=0.636 Sum_probs=15.5
Q ss_pred eEEEecCcceEEEeccCC
Q psy9135 738 GVVLDIGSKYTKYGIFGS 755 (1107)
Q Consensus 738 ~vViD~Gs~~iK~G~age 755 (1107)
.+.||+|...+|+|+..+
T Consensus 2 iL~IDIGnT~iK~al~d~ 19 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEG 19 (258)
T ss_pred EEEEEECCCcEEEEEEEC
Confidence 368999999999998764
No 149
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=48.49 E-value=1.2e+02 Score=33.46 Aligned_cols=118 Identities=20% Similarity=0.180 Sum_probs=58.5
Q ss_pred EEEecCCceeEEeeecCcccccccccceeccCCccccceeccCchhhHHHHHHHHHHHHHhhccccCCCCCeEEEEecCC
Q psy9135 45 VVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYEYKDADDLYGLLIEFIRKIFFKYFVTSPKDKRIVVVESVL 124 (1107)
Q Consensus 45 iViD~GS~~~K~G~age~~P~~i~ps~v~~~~~~~~~~~~~~~~~~~~~~~le~i~~~~~~~~L~~~~~~~~vllte~~~ 124 (1107)
++||.|-.+++.|+-.+......+. .++. + ....|.+...++..+... ...+-+-++..+..
T Consensus 3 L~iDiGNT~~~~a~~~~~~~~~~~r-----~~t~---------~-~~~~del~~~~~~l~~~~---~~~~~~~~~issvv 64 (251)
T COG1521 3 LLIDIGNTRIVFALYEGGKVVQTWR-----LATE---------D-LLTEDELGLQLHNLFDGN---SVRDIDGIVISSVV 64 (251)
T ss_pred EEEEeCCCeEEEEEecCCeEEEEEe-----eccc---------c-cccHHHHHHHHHHHhccc---cccccccceeeccC
Confidence 6788888888877776433332221 1100 0 111233444555554222 12221222222222
Q ss_pred CcHHHHHHHHHHHHhhcCcceEEE-ecch------------------hhhhccC---CCceEEEEEeCCCceEEEEeecC
Q psy9135 125 TPTVWRNTLAKVLFKHYEVLSLLY-VPSH------------------LVSLCTL---GVNTGLVLDIGYSEATLLPVYEG 182 (1107)
Q Consensus 125 ~~~~~re~l~eilFE~~~vpsv~~-~~~~------------------lls~y~~---g~~tglVVDiG~~~T~V~PV~dG 182 (1107)
+.....+..++.|.|++...+. .+.. ++.++++ ....++|||.|...|- .-|-+|
T Consensus 65 --p~~~~~~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~~p~elG~DR~~n~vaA~~~~~~~~vVVD~GTA~Ti-d~v~~~ 141 (251)
T COG1521 65 --PPLGIFLEAVLKEYFKVKPLVVISPKQLLGIRVLYDNPEELGADRIANAVAAYHKYGKAVVVVDFGTATTI-DLVDEG 141 (251)
T ss_pred --ccHHHHHHHHHHHHhccCceeeechhhccCCcccCCChhhhcHHHHHHHHHHHHHcCCcEEEEEcCCeEEE-EEEcCC
Confidence 4455667777778888877433 2221 2233332 1334899999988874 444444
Q ss_pred E
Q psy9135 183 V 183 (1107)
Q Consensus 183 ~ 183 (1107)
.
T Consensus 142 ~ 142 (251)
T COG1521 142 G 142 (251)
T ss_pred C
Confidence 3
No 150
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=48.30 E-value=12 Score=40.57 Aligned_cols=24 Identities=17% Similarity=0.587 Sum_probs=21.9
Q ss_pred CceEEEEEeCCCceEEEEeecCEe
Q psy9135 161 VNTGLVLDIGYSEATLLPVYEGVP 184 (1107)
Q Consensus 161 ~~tglVVDiG~~~T~V~PV~dG~v 184 (1107)
..+++.||+|..+|.|+||.+|..
T Consensus 129 ~dsci~VD~GSTTtDIIPi~~ge~ 152 (330)
T COG1548 129 KDSCILVDMGSTTTDIIPIKDGEA 152 (330)
T ss_pred CCceEEEecCCcccceEeecchhh
Confidence 467999999999999999999973
No 151
>PRK13326 pantothenate kinase; Reviewed
Probab=45.34 E-value=1.2e+02 Score=33.88 Aligned_cols=21 Identities=14% Similarity=0.509 Sum_probs=17.7
Q ss_pred cceEEEecCcceEEEeccCCC
Q psy9135 736 KTGVVLDIGSKYTKYGIFGSF 756 (1107)
Q Consensus 736 ~~~vViD~Gs~~iK~G~age~ 756 (1107)
+.-++||+|-.++|+|+..++
T Consensus 6 ~~~L~IDiGNT~ik~glf~~~ 26 (262)
T PRK13326 6 SSQLIIDIGNTSISFALYKDN 26 (262)
T ss_pred cEEEEEEeCCCeEEEEEEECC
Confidence 346899999999999988764
No 152
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=44.62 E-value=36 Score=38.32 Aligned_cols=81 Identities=21% Similarity=0.222 Sum_probs=51.3
Q ss_pred EEEeccCCchHHHHHHHHHHhcccCcceeeecc---cchhhhcc-----cCCceEEEEEcCCCceEEEEEEcCEeeccce
Q psy9135 812 VVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVP---SHLVSLCT-----LGVNTGLVLDIGYSEATLLPVYEGVPVLCAW 883 (1107)
Q Consensus 812 ll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~---~~~lalya-----~g~~tglVVDiG~~~T~v~PV~dG~~l~~~~ 883 (1107)
++.-+.+-.-.+++.+.+-+.+..|++ +-++. .+.++..| ....+++|+|+|.++|.++-+.+|.+. ..
T Consensus 61 ~vATsA~R~A~N~~~~~~~i~~~tGi~-i~iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~--~~ 137 (285)
T PF02541_consen 61 AVATSALREAKNSDEFLDRIKKETGID-IEIISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFENGKVV--FS 137 (285)
T ss_dssp EEEEHHHHHSTTHHHHHHHHHHHHSS--EEEE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEETTEEE--EE
T ss_pred EEhhHHHHhCcCHHHHHHHHHHHhCCc-eEEecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEECCeee--Ee
Confidence 344444445566777888888888865 22222 22222221 256789999999999999999999876 45
Q ss_pred EEEeccchHHHHH
Q psy9135 884 KDLSLGGGQSVES 896 (1107)
Q Consensus 884 ~~~~~G~G~~lt~ 896 (1107)
..+|+| .-.+++
T Consensus 138 ~Sl~lG-~vrl~e 149 (285)
T PF02541_consen 138 QSLPLG-AVRLTE 149 (285)
T ss_dssp EEES---HHHHHH
T ss_pred eeeehH-HHHHHH
Confidence 789999 444433
No 153
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=44.10 E-value=1.4e+02 Score=32.97 Aligned_cols=18 Identities=11% Similarity=0.385 Sum_probs=13.4
Q ss_pred EEEecCCceeEEeeecCc
Q psy9135 45 VVLDIGSKYTKYGIFGSF 62 (1107)
Q Consensus 45 iViD~GS~~~K~G~age~ 62 (1107)
++||+|-.++|+|+..++
T Consensus 2 L~iDiGNT~i~~g~~~~~ 19 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSGN 19 (243)
T ss_pred EEEEECCCcEEEEEEECC
Confidence 578888888888876543
No 154
>COG4377 Predicted membrane protein [Function unknown]
Probab=43.24 E-value=41 Score=35.17 Aligned_cols=51 Identities=31% Similarity=0.455 Sum_probs=39.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhccccccccchhhhhhhccchhHHHHHHHHh
Q psy9135 618 NIIFGVVISVLCQEAFRYILYLILQKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLL 681 (1107)
Q Consensus 618 ~~~~~~~~~v~~~e~~r~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~g~g~~~~~~~~~ 681 (1107)
...-+.+.+-++.|.=|++++|.+-| +.. .-.=++|-|+|||-.-+++.++
T Consensus 79 y~IYG~lMAg~FEE~gR~l~~rfl~k-R~~------------~~Ad~lAyglGHgGlEail~g~ 129 (258)
T COG4377 79 YIIYGLLMAGFFEETGRLLFFRFLEK-RSL------------EKADALAYGLGHGGLEAILLGL 129 (258)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHh-Ccc------------cchhHHHHhcccccHHHHHHHH
Confidence 44567789999999999999999977 221 1133677899999999998654
No 155
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=38.88 E-value=94 Score=34.64 Aligned_cols=78 Identities=15% Similarity=0.060 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhhcCcceEEEecchhhhhccC----CCc-eEEEEEeCCCceEEEEeecCEecccceEEecccHHHHHH
Q psy9135 127 TVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTL----GVN-TGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEA 201 (1107)
Q Consensus 127 ~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~----g~~-tglVVDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~ 201 (1107)
+-.-+.+++-|=+.++++--.-..++-++..|+ |.. --.|+|+|..+|...-+-..--+. ...+-=+|+-+|.
T Consensus 94 ~l~M~~iA~~l~~~lgv~V~igGvEAemAi~GALTTPGt~~PlaIlDmG~GSTDAsii~~~g~v~--~iHlAGAG~mVTm 171 (332)
T PF08841_consen 94 KLQMQMIADELEEELGVPVEIGGVEAEMAILGALTTPGTDKPLAILDMGGGSTDASIINRDGEVT--AIHLAGAGNMVTM 171 (332)
T ss_dssp S-TCHHHHHHHHHHHTSEEEEECEHHHHHHHHHTTSTT--SSEEEEEE-SSEEEEEEE-TTS-EE--EEEEE-SHHHHHH
T ss_pred cccHHHHHHHHHHHHCCceEEccccHHHHHhcccCCCCCCCCeEEEecCCCcccHHHhCCCCcEE--EEEecCCchhhHH
Confidence 344567899999999999888889998888875 433 345789999999977665433332 2445667888888
Q ss_pred HHHHh
Q psy9135 202 HIRRG 206 (1107)
Q Consensus 202 ~L~~l 206 (1107)
.+...
T Consensus 172 lI~sE 176 (332)
T PF08841_consen 172 LINSE 176 (332)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77766
No 156
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=36.31 E-value=2.7e+02 Score=29.70 Aligned_cols=19 Identities=26% Similarity=0.621 Sum_probs=14.3
Q ss_pred EEEecCCceeEEeeecCcc
Q psy9135 45 VVLDIGSKYTKYGIFGSFQ 63 (1107)
Q Consensus 45 iViD~GS~~~K~G~age~~ 63 (1107)
++||+|-..+|.|+..++.
T Consensus 2 L~iDiGNT~ik~~~~~~~~ 20 (206)
T PF03309_consen 2 LLIDIGNTRIKWALFDGDK 20 (206)
T ss_dssp EEEEE-SSEEEEEEEETTE
T ss_pred EEEEECCCeEEEEEEECCE
Confidence 6788999999988886653
No 157
>PRK03011 butyrate kinase; Provisional
Probab=35.45 E-value=4.6e+02 Score=30.72 Aligned_cols=25 Identities=12% Similarity=0.004 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCceEEEEeecCEeccc
Q psy9135 162 NTGLVLDIGYSEATLLPVYEGVPVLC 187 (1107)
Q Consensus 162 ~tglVVDiG~~~T~V~PV~dG~vl~~ 187 (1107)
.+.+++.+|... .++.|.||.++..
T Consensus 176 ~n~I~~hLGtGi-g~gai~~Gk~idg 200 (358)
T PRK03011 176 LNLIVAHLGGGI-SVGAHRKGRVIDV 200 (358)
T ss_pred CcEEEEEeCCCc-eeeEEECCEEEec
Confidence 489999999977 7889999999865
No 158
>KOG1386|consensus
Probab=35.37 E-value=3e+02 Score=33.26 Aligned_cols=88 Identities=13% Similarity=0.029 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhhccccCCCCCeEEEEecC---CCcHHHHHHHHHHHHhhcCcc--------eEEEec---chhhhh---
Q psy9135 94 GLLIEFIRKIFFKYFVTSPKDKRIVVVESV---LTPTVWRNTLAKVLFKHYEVL--------SLLYVP---SHLVSL--- 156 (1107)
Q Consensus 94 ~~le~i~~~~~~~~L~~~~~~~~vllte~~---~~~~~~re~l~eilFE~~~vp--------sv~~~~---~~lls~--- 156 (1107)
.++..+++.+-...-+-...+.||.|--.. +-+..+.+.+.+.+-..+... .+.++. +.+.+.
T Consensus 65 ~~l~pLlefA~~~IPk~~h~~Tpl~l~ATAGMRLL~~~~qeaIl~~l~~~l~~~s~f~f~~~~a~IIsG~~EGvYgWi~~ 144 (501)
T KOG1386|consen 65 VYLTPLLEFAKEHIPKEKHKETPLFLGATAGMRLLPLAQQEAILEVLRRVLKSLSDFLFDDEWARIISGKEEGVYGWIAA 144 (501)
T ss_pred HHHHHHHHHHHhhCCHhhcCCCCeEEEecccceecCcccHHHHHHHHHHhcccccCCcccccccEEeecccceehhhHHH
Confidence 667777776653322223467788776554 345667778888876666522 222222 222222
Q ss_pred ------ccC------CCceEEEEEeCCCceEEEEeec
Q psy9135 157 ------CTL------GVNTGLVLDIGYSEATLLPVYE 181 (1107)
Q Consensus 157 ------y~~------g~~tglVVDiG~~~T~V~PV~d 181 (1107)
|+. ...|-=.+|+|..+|+|+=+..
T Consensus 145 NY~LG~f~~~~~~~~~~~T~G~lDlGGAS~QItFe~~ 181 (501)
T KOG1386|consen 145 NYLLGRFGKKNRWDSRKETFGALDLGGASTQITFEPP 181 (501)
T ss_pred HHHHHhccccCcccCCcceeeeEecCCceeEEEEecC
Confidence 122 4567778999999999997766
No 159
>PF13367 PrsW-protease: Protease prsW family
Probab=34.60 E-value=51 Score=34.64 Aligned_cols=66 Identities=18% Similarity=0.286 Sum_probs=48.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH-hhcchhhhccccccccchhhhhhhccchhHHHHHHHHhhhcccccC
Q psy9135 618 NIIFGVVISVLCQEAFRYILYLILQK-SRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSG 689 (1107)
Q Consensus 618 ~~~~~~~~~v~~~e~~r~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~g~g~g~~~~~~~~~~~~~~~~g 689 (1107)
......+++-.++|...+....++.. .....+ ...|-...+.++|+||+++--+...++...+..+
T Consensus 42 ~~~~~~~~a~~~EE~~K~l~v~~~~~~~~~~~~------~~~d~~~~g~a~GlGFa~~En~~Y~~~~~~~~~~ 108 (191)
T PF13367_consen 42 SLWGAFLIAPLVEEFAKLLPVLLLLLLRRRRFD------EPMDGLVYGAAVGLGFAIMENILYILNAAEDNGG 108 (191)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhHhhc------CcchhhhhhhHHHHHHHHHHHHHHHHHhhhcccc
Confidence 67778888889999999887776662 333332 2244558899999999999999888877655443
No 160
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=34.40 E-value=1.3e+02 Score=33.12 Aligned_cols=57 Identities=11% Similarity=0.003 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhhcCcceEEEecchhhhhccC-------CCceEEEEEeCCCceEEEEeecCEec
Q psy9135 128 VWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTL-------GVNTGLVLDIGYSEATLLPVYEGVPV 185 (1107)
Q Consensus 128 ~~re~l~eilFE~~~vpsv~~~~~~lls~y~~-------g~~tglVVDiG~~~T~V~PV~dG~vl 185 (1107)
..|-+-..--....+... ++.....+|.+|+ .....+|||+|.++|-..-|.+|++.
T Consensus 127 ~TRm~av~~~~~~~~~~~-~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v~~~rI~ 190 (254)
T PF08735_consen 127 FTRMRAVRESLGGAGYDE-VVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALVKDGRIY 190 (254)
T ss_pred HHHHHHHHHHhccCCCCc-eEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEEeCCEEE
Confidence 334444444445555555 7777777877774 45789999999999999999999986
No 161
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=33.22 E-value=3.2e+02 Score=31.95 Aligned_cols=136 Identities=15% Similarity=0.088 Sum_probs=72.8
Q ss_pred ceEEEecCcceEEEeccCCCCccEEEecceeccCCCCccceeecCCHHhhHHHHHHHHHHHHHhccccCCCCceEEEEec
Q psy9135 737 TGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYEYKDADDLYGLLIEFIRKIFFKYFVTSPKDKRIVVVES 816 (1107)
Q Consensus 737 ~~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~~~d~le~i~~~~~~~~L~~~~~~~~vll~e~ 816 (1107)
-.+=||.||.++|+=.-.|+. .+.-+.+.... +... .++.+..++ +.++.+..+. +.
T Consensus 136 ~~LGID~GSTtTK~VLm~d~~--~I~~~~~~~t~---------g~p~------~~~~l~~~l-e~l~~~~~~I-----~~ 192 (396)
T COG1924 136 YTLGIDSGSTTTKAVLMEDGK--EILYGFYVSTK---------GRPI------AEKALKEAL-EELGEKLEEI-----LG 192 (396)
T ss_pred EEEEEecCCcceeEEEEeCCC--eEEEEEEEcCC---------CChh------HHHHHHHHH-HHcccChhee-----ee
Confidence 468899999999997766654 23322222110 1111 234444444 3444332221 22
Q ss_pred cCCchHHHHHHHHHHhcccCcceeeecccchhhhccc-CCceEEEEEcCCCceEEEEEEcCEeeccceEE-EeccchHHH
Q psy9135 817 VLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTL-GVNTGLVLDIGYSEATLLPVYEGVPVLCAWKD-LSLGGGQSV 894 (1107)
Q Consensus 817 ~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~-g~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~-~~~G~G~~l 894 (1107)
.-.+-.-|+.+...++=...++-+...- ..|.|=. +.. .|+|||.+-+-++-|.||.+-.-..-. +.=|.|++|
T Consensus 193 ~~~TGYGR~~v~~~~~aD~~~~Ei~ah~--kgA~~f~p~~d--tIiDIGGQD~K~i~i~dG~v~df~mN~~CAAGtGrFL 268 (396)
T COG1924 193 LGVTGYGRNLVGAALGADKVVVEISAHA--KGARYFAPDVD--TVIDIGGQDSKVIKLEDGKVDDFTMNDKCAAGTGRFL 268 (396)
T ss_pred eeeecccHHHhhhhhcCCcceeeeehhH--HHHHHhCCCCc--EEEEecCcceeEEEEeCCeeeeeEeccccccccchHH
Confidence 2234455666665555444444443222 2233322 222 899999999999999999876443222 223346777
Q ss_pred HHHHH
Q psy9135 895 ESHIR 899 (1107)
Q Consensus 895 t~~L~ 899 (1107)
....+
T Consensus 269 E~~A~ 273 (396)
T COG1924 269 EVIAR 273 (396)
T ss_pred HHHHH
Confidence 66553
No 162
>PRK13318 pantothenate kinase; Reviewed
Probab=32.70 E-value=2.5e+02 Score=31.01 Aligned_cols=15 Identities=20% Similarity=0.222 Sum_probs=12.4
Q ss_pred ceEEEEEeCCCceEE
Q psy9135 162 NTGLVLDIGYSEATL 176 (1107)
Q Consensus 162 ~tglVVDiG~~~T~V 176 (1107)
..++|||+|...|-=
T Consensus 124 ~~~ivid~GTA~t~d 138 (258)
T PRK13318 124 GPLIVVDFGTATTFD 138 (258)
T ss_pred CCEEEEEcCCceEEE
Confidence 489999999988743
No 163
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=32.40 E-value=4.3e+02 Score=30.02 Aligned_cols=127 Identities=14% Similarity=0.096 Sum_probs=64.3
Q ss_pred eEEEecCcceEEEeccCCCCccEEEecceeccCCCCccceeecCCHHhhHHHHHHHHHHHHHhccccCCCCceEEEEecc
Q psy9135 738 GVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYEYKDADDLYGLLIEFIRKIFFKYFVTSPKDKRIVVVESV 817 (1107)
Q Consensus 738 ~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~~~d~le~i~~~~~~~~L~~~~~~~~vll~e~~ 817 (1107)
.+=||+||.++|+-.-.+. . ++-+.+- +. +.+. -+...++++.++ +.++...++...+.+-
T Consensus 34 ~~GIDiGStt~K~Vlld~~--~-i~~~~~~-~t---------g~~~---~~~a~~~l~~~l-~~~g~~~~~v~~~~~T-- 94 (293)
T TIGR03192 34 TCGIDVGSVSSQAVLVCDG--E-LYGYNSM-RT---------GNNS---PDSAKNALQGIM-DKIGMKLEDINYVVGT-- 94 (293)
T ss_pred EEEEEeCchhEEEEEEeCC--E-EEEEEee-cC---------CCCH---HHHHHHHHHHHH-HHcCCcccceEEEEEE--
Confidence 4789999999998766543 2 3322111 11 1011 124556666666 4455544444433331
Q ss_pred CCchHHHHHHHHHHhcccCcceeeecccchhhhccc----CCceEEEEEcCCCceEEEEE-EcCEeeccceEEEe--ccc
Q psy9135 818 LTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTL----GVNTGLVLDIGYSEATLLPV-YEGVPVLCAWKDLS--LGG 890 (1107)
Q Consensus 818 ~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~----g~~tglVVDiG~~~T~v~PV-~dG~~l~~~~~~~~--~G~ 890 (1107)
-.-|..+. |.. ..+.+-.+...+. +.....|+|||.+-+.++-+ -+|.+..- ...-. =|+
T Consensus 95 ---GyGr~~~~---~a~------~~v~EItaha~Ga~~~~pp~v~tIIDIGGQDsK~I~~d~~G~v~dF-~MNdkCAAGT 161 (293)
T TIGR03192 95 ---GYGRVNVP---FAH------KAITEIACHARGANYMGGNAVRTILDMGGQDCKAIHCDEKGKVTNF-LMNDKCAAGT 161 (293)
T ss_pred ---Ccchhhcc---hhh------cceeeHHHHHHHHHHhcCCCCCEEEEeCCCceEEEEEcCCCcEeee-eecCcccccc
Confidence 11122110 100 0122223333322 23467999999999999988 46765433 22222 345
Q ss_pred hHHHHH
Q psy9135 891 GQSVES 896 (1107)
Q Consensus 891 G~~lt~ 896 (1107)
|++|..
T Consensus 162 GrFLE~ 167 (293)
T TIGR03192 162 GRGMEV 167 (293)
T ss_pred cHHHHH
Confidence 777765
No 164
>PRK13326 pantothenate kinase; Reviewed
Probab=31.29 E-value=3e+02 Score=30.66 Aligned_cols=16 Identities=31% Similarity=0.569 Sum_probs=12.8
Q ss_pred CCceEEEEEeCCCceE
Q psy9135 160 GVNTGLVLDIGYSEAT 175 (1107)
Q Consensus 160 g~~tglVVDiG~~~T~ 175 (1107)
+...++|||+|...|-
T Consensus 124 ~~~~~iVID~GTA~T~ 139 (262)
T PRK13326 124 NINDALVVDLGTACTI 139 (262)
T ss_pred CCCCEEEEECCCceEE
Confidence 4357999999998774
No 165
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=30.62 E-value=2.2e+02 Score=31.73 Aligned_cols=45 Identities=24% Similarity=0.258 Sum_probs=29.1
Q ss_pred CceEEEEEcCCCceEEEEEE-cCEeeccceE-EEeccchHHHHHHHH
Q psy9135 855 VNTGLVLDIGYSEATLLPVY-EGVPVLCAWK-DLSLGGGQSVESHIR 899 (1107)
Q Consensus 855 ~~tglVVDiG~~~T~v~PV~-dG~~l~~~~~-~~~~G~G~~lt~~L~ 899 (1107)
.....|+|||.+-+-++-+- +|.+..-... ++.=|+|++|....+
T Consensus 96 p~~~tIiDIGGQD~K~I~~~~~G~v~~f~MNdkCAAGTG~FLe~~A~ 142 (262)
T TIGR02261 96 PEARAVLDIGALHGRAIRMDERGKVEAYKMTSQCASGSGQFLENIAR 142 (262)
T ss_pred CCCCEEEEeCCCceEEEEEcCCCcEeeEEecCcccccccHHHHHHHH
Confidence 35679999999999999884 6766432211 122345787765543
No 166
>PRK13320 pantothenate kinase; Reviewed
Probab=26.91 E-value=3.9e+02 Score=29.45 Aligned_cols=19 Identities=37% Similarity=0.600 Sum_probs=16.3
Q ss_pred eEEEecCcceEEEeccCCC
Q psy9135 738 GVVLDIGSKYTKYGIFGSF 756 (1107)
Q Consensus 738 ~vViD~Gs~~iK~G~age~ 756 (1107)
-+.||+|..++|.|+..++
T Consensus 4 ~L~iDiGNT~ik~~~~~~~ 22 (244)
T PRK13320 4 NLVIDIGNTTTKLAVFEGD 22 (244)
T ss_pred EEEEEeCCCcEEEEEEECC
Confidence 4789999999999987653
No 167
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=26.47 E-value=4.5e+02 Score=30.15 Aligned_cols=151 Identities=16% Similarity=0.078 Sum_probs=81.1
Q ss_pred ceEEEecCcceEEEecc---------CCCCccEEEecc--eeccCCCCccceeecCCHHhhHHHHHHHHHHHHHhccccC
Q psy9135 737 TGVVLDIGSKYTKYGIF---------GSFQPKGFIKSQ--VKDPHTNKLRNLYEYKDADDLYGLLIEFIRKIFFKYFVTS 805 (1107)
Q Consensus 737 ~~vViD~Gs~~iK~G~a---------ge~~P~~i~ps~--vg~~~~~~~~~~~~~~~~~~~~d~le~i~~~~~~~~L~~~ 805 (1107)
..|=||+|+.++.+=|+ +...||..+-.. +.+. .-.-...+..+- -+-++++.+...-| ..-++.
T Consensus 6 lSVGIDiGTsTTQvifS~lel~Nmas~~~VPri~ii~kdi~~rS--~i~FTPv~~q~~-id~~alk~~v~eeY-~~AGi~ 81 (473)
T COG4819 6 LSVGIDIGTSTTQVIFSKLELVNMASVSQVPRIEIIKKDISWRS--PIFFTPVDKQGG-IDEAALKKLVLEEY-QAAGIA 81 (473)
T ss_pred eeeeeeccCceeeeeeeeeEEeecccccccceEEEEecceeeec--ceeeeeecccCC-ccHHHHHHHHHHHH-HHcCCC
Confidence 46889999999998876 344666554311 0000 000001111111 12456666665554 455677
Q ss_pred CCC---ceEEEEeccCCchHHHHHHHHH--HhcccCcceeeecccchhhhcccC-------CceEE-EEEcCCCceEEEE
Q psy9135 806 PKD---KRIVVVESVLTPTVWRNTLAKV--LFKHYEVLSLLYVPSHLVSLCTLG-------VNTGL-VLDIGYSEATLLP 872 (1107)
Q Consensus 806 ~~~---~~vll~e~~~~~~~~re~l~ei--LFE~~~vpsv~~~~~~~lalya~g-------~~tgl-VVDiG~~~T~v~P 872 (1107)
|++ -.|+++-...-.+..|+-+.-+ ..-.|=|.+---.-+++-|--++| +.|++ =+|||.+.|...-
T Consensus 82 pesi~sGAvIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~t~Seqr~t~v~NlDIGGGTtN~sl 161 (473)
T COG4819 82 PESIDSGAVIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSEQRLTRVLNLDIGGGTTNYSL 161 (473)
T ss_pred hhccccccEEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccccchhhhhceEEEEEeccCCccceee
Confidence 753 4578876665555555533322 122333332222223333333333 44443 3799999999988
Q ss_pred EEcCEeeccceEEEeccchHHH
Q psy9135 873 VYEGVPVLCAWKDLSLGGGQSV 894 (1107)
Q Consensus 873 V~dG~~l~~~~~~~~~G~G~~l 894 (1107)
.-.|.++..+. +++| |+.+
T Consensus 162 FD~Gkv~dTaC--LdiG-GRLi 180 (473)
T COG4819 162 FDAGKVSDTAC--LDIG-GRLI 180 (473)
T ss_pred eccccccccee--eecC-cEEE
Confidence 88888875544 7888 7644
No 168
>PRK13329 pantothenate kinase; Reviewed
Probab=25.42 E-value=5e+02 Score=28.68 Aligned_cols=15 Identities=20% Similarity=0.275 Sum_probs=12.3
Q ss_pred CceEEEEEeCCCceE
Q psy9135 161 VNTGLVLDIGYSEAT 175 (1107)
Q Consensus 161 ~~tglVVDiG~~~T~ 175 (1107)
...+||||+|...|-
T Consensus 118 ~~~~lViD~GTA~Ti 132 (249)
T PRK13329 118 ARPCLVVMVGTAVTV 132 (249)
T ss_pred CCCEEEEECCCceeE
Confidence 457999999998874
No 169
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=25.08 E-value=1.5e+02 Score=33.18 Aligned_cols=97 Identities=20% Similarity=0.100 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHhcccCcceeeecccchhhhcccCCce-----EEEEEcCCCceEEEEEEcCEeeccceEEEeccc-hHHH
Q psy9135 821 TVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNT-----GLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGG-GQSV 894 (1107)
Q Consensus 821 ~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~~t-----glVVDiG~~~T~v~PV~dG~~l~~~~~~~~~G~-G~~l 894 (1107)
+-.-+.+++-|=+.++++--.-...+-+|..+.-.|- -.|+|+|.++|...-|-.. ..+..++.+| |..+
T Consensus 94 ~l~M~~iA~~l~~~lgv~V~igGvEAemAi~GALTTPGt~~PlaIlDmG~GSTDAsii~~~----g~v~~iHlAGAG~mV 169 (332)
T PF08841_consen 94 KLQMQMIADELEEELGVPVEIGGVEAEMAILGALTTPGTDKPLAILDMGGGSTDASIINRD----GEVTAIHLAGAGNMV 169 (332)
T ss_dssp S-TCHHHHHHHHHHHTSEEEEECEHHHHHHHHHTTSTT--SSEEEEEE-SSEEEEEEE-TT----S-EEEEEEE-SHHHH
T ss_pred cccHHHHHHHHHHHHCCceEEccccHHHHHhcccCCCCCCCCeEEEecCCCcccHHHhCCC----CcEEEEEecCCchhh
Confidence 4556788899999999998888889999888764432 4578999999997665433 2334444442 7888
Q ss_pred HHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHh-ceeec
Q psy9135 895 ESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVC-SCFVT 941 (1107)
Q Consensus 895 t~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~-~c~v~ 941 (1107)
|..+...|--. +.+++|+||.. +|.|.
T Consensus 170 TmlI~sELGl~--------------------d~~lAE~IKkyPlaKVE 197 (332)
T PF08841_consen 170 TMLINSELGLE--------------------DRELAEDIKKYPLAKVE 197 (332)
T ss_dssp HHHHHHHCT-S---------------------HHHHHHHHHS-EEEEE
T ss_pred HHHHHHhhCCC--------------------CHHHHHHhhhcchhhhc
Confidence 87776665211 24589999975 34443
No 170
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=25.03 E-value=1.2e+02 Score=32.92 Aligned_cols=45 Identities=13% Similarity=0.118 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhhccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCc
Q psy9135 93 YGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEV 143 (1107)
Q Consensus 93 ~~~le~i~~~~~~~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~v 143 (1107)
.+.++.|=+|+| ..+++||+|+.....+..+.++|+++|-|.||=
T Consensus 73 ~dv~~~I~~~AF------~~S~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 117 (229)
T cd08627 73 SDVLHTIKEHAF------VTSEYPIILSIEDHCSIVQQRNMAQHFKKVFGD 117 (229)
T ss_pred HHHHHHHHHhhc------cCCCCCEEEEEcccCCHHHHHHHHHHHHHHHhh
Confidence 455677767776 257899999999999999999999999999984
No 171
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=24.59 E-value=54 Score=38.31 Aligned_cols=40 Identities=28% Similarity=0.366 Sum_probs=27.0
Q ss_pred HHHHHHHHhccCccchhhhhccEEEEcCCCCccChHHHHHHHHHh
Q psy9135 457 ATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLLQELRT 501 (1107)
Q Consensus 457 ~e~I~~sI~~~~~d~r~~L~~nIvLtGG~S~ipGf~eRL~~EL~~ 501 (1107)
++.|.+++++.+.+ ...|+|+||++.=+-|.+||++.|..
T Consensus 271 A~sI~~~i~~~~~~-----~~~v~v~GGGa~N~~L~~~L~~~l~~ 310 (364)
T PF03702_consen 271 AQSIADAIRRFPPQ-----PDEVYVCGGGARNPFLMERLQERLPG 310 (364)
T ss_dssp HHHHHHHHHHH-TT------EEEEEESGGGG-HHHHHHHHHH-TT
T ss_pred HHHHHHHHHhcCCC-----CceEEEECCCcCCHHHHHHHHhhCCC
Confidence 34455555554432 56899999999999999999998853
No 172
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=24.03 E-value=1.3e+02 Score=33.47 Aligned_cols=46 Identities=7% Similarity=-0.004 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCc
Q psy9135 92 LYGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEV 143 (1107)
Q Consensus 92 ~~~~le~i~~~~~~~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~v 143 (1107)
..+.++.|=+++|. .+++||+|+.....+..+.++|+++|-|.||=
T Consensus 72 f~~v~~~I~~~AF~------~s~yPvIlslE~Hcs~~qQ~~~a~~l~~~~Gd 117 (258)
T cd08630 72 FRDVIQAVRQHAFT------ASPYPVILSLENHCGLEQQAAMARHLQTILGD 117 (258)
T ss_pred HHHHHHHHHHHhcc------CCCCCEEEEeeccCCHHHHHHHHHHHHHHHhh
Confidence 34666777777772 57899999999999999999999999999984
No 173
>COG4035 Predicted membrane protein [Function unknown]
Probab=23.55 E-value=32 Score=31.22 Aligned_cols=43 Identities=16% Similarity=0.359 Sum_probs=27.8
Q ss_pred HHhcCCCCccccccccccccceeeeeeeeecCCCeEEehhhH---hHHHHHHH
Q psy9135 553 YLNNNMTYMEFLGCTMTAFGPVIAMFLTTIMQDPVKVIILVA---SAFAWLLS 602 (1107)
Q Consensus 553 YeE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 602 (1107)
|-..=+.+.|+.||.+++| +..+++-=.++=+++- .++.||.+
T Consensus 60 ~~~~v~~~~~~ag~flig~-------v~gMRPGYGR~Etv~Gt~LA~l~wL~~ 105 (108)
T COG4035 60 WMRSVPVPLYMAGCFLIGF-------VLGMRPGYGRVETVVGTFLAVLLWLYF 105 (108)
T ss_pred cccCCchHHHHHHHHHHHH-------hhccCCCCceeehhHHHHHHHHHHHhh
Confidence 3344567899999999975 4455555566655554 44556655
No 174
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=23.48 E-value=4.8e+02 Score=28.89 Aligned_cols=46 Identities=11% Similarity=0.014 Sum_probs=35.2
Q ss_pred cccCcceeeecccchhhhccc-------CCceEEEEEcCCCceEEEEEEcCEee
Q psy9135 833 KHYEVLSLLYVPSHLVSLCTL-------GVNTGLVLDIGYSEATLLPVYEGVPV 879 (1107)
Q Consensus 833 E~~~vpsv~~~~~~~lalya~-------g~~tglVVDiG~~~T~v~PV~dG~~l 879 (1107)
...+... ++.+...+|++++ .....+|||+|.+.|-..-|.+|.+.
T Consensus 138 ~~~~~~~-~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v~~~rI~ 190 (254)
T PF08735_consen 138 GGAGYDE-VVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALVKDGRIY 190 (254)
T ss_pred ccCCCCc-eEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEEeCCEEE
Confidence 3344444 7777777777763 45689999999999999999999865
No 175
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=23.46 E-value=5.4e+02 Score=28.45 Aligned_cols=125 Identities=12% Similarity=0.085 Sum_probs=64.1
Q ss_pred EEecCcceEEEeccCCCCccEEEecceeccCCCCccceeecCCHHhhHHHHHHHHHHHHHhccccCCCCceEE-EEeccC
Q psy9135 740 VLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYEYKDADDLYGLLIEFIRKIFFKYFVTSPKDKRIV-VVESVL 818 (1107)
Q Consensus 740 ViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~~~d~le~i~~~~~~~~L~~~~~~~~vl-l~e~~~ 818 (1107)
=||.|+..||+-...++.- ++....+.+.+ + ...+.......+.+.++.++ +..+.++.+...+ +.-.-.
T Consensus 2 GIDgGgTkt~~vl~d~~g~--il~~~~~~~~n-----~-~~~~~~~~~~~i~~~i~~~~-~~~~~~~~~i~~~~~g~aG~ 72 (271)
T PF01869_consen 2 GIDGGGTKTKAVLVDENGN--ILGRGKGGGAN-----Y-NSVGFEEAMENIKEAIEEAL-SQAGLSPDDIAAICIGAAGY 72 (271)
T ss_dssp EEEECSSEEEEEEEETTSE--EEEEEEES-TT-----H-HHHHHHHHHHHHHHHHHHHH-HHHTTSTTCCCEEEEEEEEE
T ss_pred EEeeChheeeeEEEeCCCC--EEEEEEeCCCC-----C-CCCCcchhhhHHHHHHHHHH-HHcCCCccccceeeeeEeee
Confidence 3899999999887765432 22222221100 0 00011122344556666666 4556666654433 322222
Q ss_pred CchHHHHHHH-HHHhcccCcceeeecccchhhhcccCCceEEEEEcCCCceEEEEEE-cCEee
Q psy9135 819 TPTVWRNTLA-KVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVY-EGVPV 879 (1107)
Q Consensus 819 ~~~~~re~l~-eiLFE~~~vpsv~~~~~~~lalya~g~~tglVVDiG~~~T~v~PV~-dG~~l 879 (1107)
.......++. +++.+ .+.+.+....++++.....|+|+ ++.+.+.+.-+- +|.+.
T Consensus 73 ~~~~~~~~~~~~~~~~-----~v~~~~Da~~al~~~~~~~giv~-I~GTGS~~~~~~~~g~~~ 129 (271)
T PF01869_consen 73 GRAGDEQEFQEEIVRS-----EVIVVNDAAIALYGATAEDGIVV-IAGTGSIAYGRDRDGRVI 129 (271)
T ss_dssp EETTTTTHHHHHHHHH-----EEEEEEHHHHHHHHHSTSSEEEE-EESSSEEEEEEETTSEEE
T ss_pred cCcccccchhhcceEE-----EEEEEHHHHHHhCCCCCCcEEEE-EcCCCceEEEEEcCCcEE
Confidence 1111111111 22222 88999999999998655445554 666666777776 67554
No 176
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=23.41 E-value=1.3e+02 Score=33.31 Aligned_cols=47 Identities=11% Similarity=0.031 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCc
Q psy9135 91 DLYGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEV 143 (1107)
Q Consensus 91 ~~~~~le~i~~~~~~~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~v 143 (1107)
...+.++.|=+++|. .+++||+|+.....+..+.++|+++|-|.||=
T Consensus 73 ~f~dv~~aI~~~AF~------~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 119 (257)
T cd08626 73 LFKDVIQAIKDTAFV------TSDYPVILSFENHCSKPQQYKLAKYCEEIFGD 119 (257)
T ss_pred CHHHHHHHHHHHhcc------cCCCCEEEEEeccCCHHHHHHHHHHHHHHHhH
Confidence 335667777778772 47899999999999999999999999999984
No 177
>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core
Probab=23.22 E-value=1.3e+02 Score=33.21 Aligned_cols=46 Identities=9% Similarity=0.135 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCc
Q psy9135 92 LYGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEV 143 (1107)
Q Consensus 92 ~~~~le~i~~~~~~~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~v 143 (1107)
..+.++.|=+++|. .+++||+|+.....+..+.++|+++|-|.||=
T Consensus 72 f~dv~~~I~~~AF~------~S~yPvIlslE~Hcs~~qQ~~ma~~l~~~~Gd 117 (254)
T cd08596 72 FKDVVEAINRSAFI------TSDYPVILSIENHCSLQQQRKMAEIFKTVFGE 117 (254)
T ss_pred HHHHHHHHHHHhcc------CCCCCEEEEecccCCHHHHHHHHHHHHHHHhH
Confidence 34666777777772 47899999999999999999999999999983
No 178
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=23.09 E-value=1.3e+02 Score=33.26 Aligned_cols=47 Identities=9% Similarity=-0.013 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCc
Q psy9135 91 DLYGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEV 143 (1107)
Q Consensus 91 ~~~~~le~i~~~~~~~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~v 143 (1107)
...+.++.|=+++| ..+++||+|+.....+..+.++|+++|-|.||=
T Consensus 71 ~f~~v~~~I~~~AF------~~S~yPvIlsLE~Hcs~~qQ~~ma~~l~~~lGd 117 (258)
T cd08629 71 LFCDVLRAIRDYAF------KASPYPVILSLENHCSLEQQRVMARHLRAILGP 117 (258)
T ss_pred CHHHHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 33466777777777 257899999999999999999999999999984
No 179
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta. This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)
Probab=22.83 E-value=1.3e+02 Score=33.22 Aligned_cols=47 Identities=13% Similarity=0.065 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCc
Q psy9135 91 DLYGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEV 143 (1107)
Q Consensus 91 ~~~~~le~i~~~~~~~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~v 143 (1107)
...+.++.|=+++| ..+++||+|+.....+..+.++|+++|-|.||=
T Consensus 71 ~f~~v~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~~a~~l~~~lgd 117 (257)
T cd08595 71 LFKEVITTVEKYAF------EKSDYPVVLSLENHCSTEQQEIMAHYLVSILGE 117 (257)
T ss_pred CHHHHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 33466777777777 268899999999999999999999999999984
No 180
>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=22.67 E-value=1.4e+02 Score=32.94 Aligned_cols=47 Identities=6% Similarity=0.069 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCc
Q psy9135 91 DLYGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEV 143 (1107)
Q Consensus 91 ~~~~~le~i~~~~~~~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~v 143 (1107)
...+.++.|=+++| ..+++||+|+.....+..+.++|+++|-|.||=
T Consensus 71 ~f~dv~~aI~~~AF------~~S~yPvIlSlE~Hcs~~qQ~~ma~~l~~~lGd 117 (253)
T cd08632 71 TFRDVIETINKYAF------VKNEFPVILSIENHCSIQQQKKIAQYLKEIFGD 117 (253)
T ss_pred CHHHHHHHHHHHhc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHhh
Confidence 33566777777777 257899999999999999999999999999984
No 181
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.66 E-value=3.7e+02 Score=29.84 Aligned_cols=40 Identities=23% Similarity=0.235 Sum_probs=29.1
Q ss_pred EEEecchhhhhccC----CCceEEEEEeCCCceEEEEeecCEec
Q psy9135 146 LLYVPSHLVSLCTL----GVNTGLVLDIGYSEATLLPVYEGVPV 185 (1107)
Q Consensus 146 v~~~~~~lls~y~~----g~~tglVVDiG~~~T~V~PV~dG~vl 185 (1107)
.++..+-+++..++ ...-++|||+|.++|...-|.++++.
T Consensus 207 av~mDskfaav~gal~dpaa~palvVd~GngHttaalvdedRI~ 250 (342)
T COG4012 207 AVAMDSKFAAVMGALVDPAADPALVVDYGNGHTTAALVDEDRIV 250 (342)
T ss_pred EEEEcchhHhhhhcccCcccCceEEEEccCCceEEEEecCCeEE
Confidence 34445555555554 23579999999999999999998764
No 182
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=22.33 E-value=7.2e+02 Score=28.04 Aligned_cols=54 Identities=7% Similarity=-0.047 Sum_probs=41.2
Q ss_pred HHHHHHhcccCcceeeecccchhhhcc-------cCCceEEEEEcCCCceEEEEEEcCEeecc
Q psy9135 826 TLAKVLFKHYEVLSLLYVPSHLVSLCT-------LGVNTGLVLDIGYSEATLLPVYEGVPVLC 881 (1107)
Q Consensus 826 ~l~eiLFE~~~vpsv~~~~~~~lalya-------~g~~tglVVDiG~~~T~v~PV~dG~~l~~ 881 (1107)
.+.+.|=|.+++| +++.+++-++++| .+..+.++|.+|.+. -..-|.+|.++..
T Consensus 88 ~l~~~l~~~~~~p-v~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGi-G~giv~~G~~~~G 148 (318)
T TIGR00744 88 PLKEKVEARVGLP-VVVENDANAAALGEYKKGAGKGARDVICITLGTGL-GGGIIINGEIRHG 148 (318)
T ss_pred CHHHHHHHHHCCC-EEEechHHHHHHHHHHhcccCCCCcEEEEEeCCcc-EEEEEECCEEeec
Confidence 3556666778887 8888988887763 245789999999877 6677889988754
No 183
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=22.19 E-value=1.4e+02 Score=33.12 Aligned_cols=46 Identities=11% Similarity=0.068 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCc
Q psy9135 92 LYGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEV 143 (1107)
Q Consensus 92 ~~~~le~i~~~~~~~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~v 143 (1107)
..+.++.|=+++| ..+++||+|+.....+..+.++|+++|-|.||=
T Consensus 72 f~~v~~~Ik~~AF------~~s~yPvIlslE~Hc~~~qQ~~ma~~l~~~lGd 117 (258)
T cd08631 72 FKDVVAAVAQYAF------QVSDYPVILSLENHCGVEQQQTMAQHLTEILGE 117 (258)
T ss_pred HHHHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 3466677777777 247899999999999999999999999999984
No 184
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=22.03 E-value=1.4e+02 Score=33.13 Aligned_cols=47 Identities=6% Similarity=-0.064 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCc
Q psy9135 91 DLYGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEV 143 (1107)
Q Consensus 91 ~~~~~le~i~~~~~~~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~v 143 (1107)
...+.++.|=+++|. .+++||+|+.....+..+.++|++++-|.||=
T Consensus 71 ~f~~v~~~I~~~aF~------~s~yPvIlslE~Hcs~~qQ~~~a~~~~~~~g~ 117 (257)
T cd08593 71 LFKDVIQAIREYAFK------VSPYPVILSLENHCSVEQQKVMAQHLKSILGD 117 (257)
T ss_pred CHHHHHHHHHHHhcc------CCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 334667777777772 47899999999999999999999999999984
No 185
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=21.90 E-value=1.5e+02 Score=32.26 Aligned_cols=47 Identities=6% Similarity=0.031 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCc
Q psy9135 91 DLYGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEV 143 (1107)
Q Consensus 91 ~~~~~le~i~~~~~~~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~v 143 (1107)
...+.++.|=+++|. .+++||+|+.....+.++.++|+++|-|.||=
T Consensus 71 ~f~dv~~aI~~~AF~------~s~yPvIlSlE~Hcs~~qQ~~ma~~l~~~lGd 117 (227)
T cd08594 71 LFRDVIETINKYAFI------KNEYPVILSIENHCSVQQQKKMAQYLKEILGD 117 (227)
T ss_pred CHHHHHHHHHHhhcc------CCCCCEEEEecccCCHHHHHHHHHHHHHHHhH
Confidence 334566777777772 47899999999999999999999999999983
No 186
>PRK13329 pantothenate kinase; Reviewed
Probab=21.88 E-value=4.8e+02 Score=28.84 Aligned_cols=17 Identities=24% Similarity=0.661 Sum_probs=15.2
Q ss_pred eEEEecCcceEEEeccC
Q psy9135 738 GVVLDIGSKYTKYGIFG 754 (1107)
Q Consensus 738 ~vViD~Gs~~iK~G~ag 754 (1107)
.++||.|...+|.++..
T Consensus 3 ~LliD~GNTriKw~~~~ 19 (249)
T PRK13329 3 FLAIDVGNTRLKWGLYD 19 (249)
T ss_pred EEEEEcCcchheeeEec
Confidence 58999999999999876
No 187
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=21.81 E-value=1.4e+02 Score=32.96 Aligned_cols=45 Identities=4% Similarity=0.042 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhhccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCc
Q psy9135 93 YGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEV 143 (1107)
Q Consensus 93 ~~~le~i~~~~~~~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~v 143 (1107)
.+.++.|=+++| ..+++||+|+.....+..+.++|+++|-|.||=
T Consensus 75 ~~v~~aIk~~AF------~~s~yPvIlslE~Hcs~~qQ~~ma~il~~~lGd 119 (257)
T cd08591 75 KDVIEAIAETAF------KTSEYPVILSFENHCSSKQQAKMAEYCREIFGD 119 (257)
T ss_pred HHHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 455667766777 257899999999999999999999999999984
No 188
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=21.40 E-value=1.5e+02 Score=32.32 Aligned_cols=46 Identities=4% Similarity=0.090 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCc
Q psy9135 92 LYGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEV 143 (1107)
Q Consensus 92 ~~~~le~i~~~~~~~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~v 143 (1107)
..+.++.|=+++|. .+++||+|+.....+.++.++|+++|-|.||=
T Consensus 72 f~dv~~~Ik~~aF~------~s~yPvILslE~Hcs~~qQ~~ma~~l~~~lG~ 117 (231)
T cd08598 72 FRDVCRAIKKYAFV------TSPYPLILSLEVHCDAEQQERMVEIMKETFGD 117 (231)
T ss_pred HHHHHHHHHHHhcc------CCCCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 34566777777762 47899999999999999999999999999984
No 189
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=21.03 E-value=1.6e+02 Score=32.12 Aligned_cols=46 Identities=7% Similarity=0.099 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCc
Q psy9135 92 LYGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEV 143 (1107)
Q Consensus 92 ~~~~le~i~~~~~~~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~v 143 (1107)
..+.++.|=+++| ..+++||+|+.....+.++.++|+++|-|.||=
T Consensus 72 f~dv~~~I~~~aF------~~s~yPvIlslE~Hcs~~qQ~~ma~il~~~lGd 117 (229)
T cd08592 72 FMDVLKTIKEHAF------VTSEYPVILSIENHCSLPQQRNMAQAFKEVFGD 117 (229)
T ss_pred HHHHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHhH
Confidence 3455667767776 357899999999999999999999999999984
No 190
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=21.00 E-value=1.2e+02 Score=32.84 Aligned_cols=45 Identities=13% Similarity=0.126 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHhccccCCCCceEEEEeccCCchHHHHHHHHHHhcccCc
Q psy9135 787 YGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEV 837 (1107)
Q Consensus 787 ~d~le~i~~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~eiLFE~~~v 837 (1107)
.|.++.|=+++|. .+++||||+.-...+.++.++|+++|-|.||=
T Consensus 73 ~dv~~~I~~~AF~------~S~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 117 (229)
T cd08627 73 SDVLHTIKEHAFV------TSEYPIILSIEDHCSIVQQRNMAQHFKKVFGD 117 (229)
T ss_pred HHHHHHHHHhhcc------CCCCCEEEEEcccCCHHHHHHHHHHHHHHHhh
Confidence 4566777777773 37899999999999999999999999999984
No 191
>cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=20.89 E-value=1.6e+02 Score=32.56 Aligned_cols=47 Identities=6% Similarity=0.035 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCc
Q psy9135 91 DLYGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEV 143 (1107)
Q Consensus 91 ~~~~~le~i~~~~~~~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~v 143 (1107)
...+.++.|=+++|. .+++||+|+.....+..+.++|+++|-|.||=
T Consensus 71 ~f~~v~~~I~~~AF~------~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 117 (254)
T cd08633 71 LFKDVIETINKYAFI------KNEYPVILSIENHCSVPQQKKMAQYLTEILGD 117 (254)
T ss_pred CHHHHHHHHHHHhcc------CCCCCEEEEecccCCHHHHHHHHHHHHHHHhH
Confidence 335667777777772 47899999999999999999999999999984
No 192
>KOG1385|consensus
Probab=20.50 E-value=4.5e+02 Score=31.12 Aligned_cols=134 Identities=12% Similarity=0.059 Sum_probs=62.6
Q ss_pred ceEEEecCcceEEEeccC-CCCccEEEecceeccCCCCc--cceeecCCHHhhHHHHHHHHHHHHHhccccCCCCceEEE
Q psy9135 737 TGVVLDIGSKYTKYGIFG-SFQPKGFIKSQVKDPHTNKL--RNLYEYKDADDLYGLLIEFIRKIFFKYFVTSPKDKRIVV 813 (1107)
Q Consensus 737 ~~vViD~Gs~~iK~G~ag-e~~P~~i~ps~vg~~~~~~~--~~~~~~~~~~~~~d~le~i~~~~~~~~L~~~~~~~~vll 813 (1107)
-+||||-||.-+|+=.=+ +..+...-|.....--.... -..|.. +-.+-=+.++.+++++-...-....+..||.+
T Consensus 68 Y~iiiDAGSTGsRvHvY~F~~~~~~~~p~le~E~F~~~kPGLSsfad-dp~~aA~Sl~~LLd~A~~~vP~~~~~kTPi~l 146 (453)
T KOG1385|consen 68 YAIIIDAGSTGTRVHVYKFDQCLPGMPPELEHELFKEVKPGLSSFAD-DPEEAANSLRPLLDVAEAFVPREHWKKTPIVL 146 (453)
T ss_pred EEEEEecCCCcceEEEEEeccCCCCCCchhHHHHHhhcCCcccccCC-ChHHHHHhHHHHHHHHHhhCCHhHhccCceEE
Confidence 489999999999976433 22211111111110000000 011211 22222345666777665332222235566665
Q ss_pred Eec-------cCCchHHHHHHHHHHhcccCcc----eeeeccc---chhhh----------cccCCceEEEEEcCCCceE
Q psy9135 814 VES-------VLTPTVWRNTLAKVLFKHYEVL----SLLYVPS---HLVSL----------CTLGVNTGLVLDIGYSEAT 869 (1107)
Q Consensus 814 ~e~-------~~~~~~~re~l~eiLFE~~~vp----sv~~~~~---~~lal----------ya~g~~tglVVDiG~~~T~ 869 (1107)
--. ........+.+-|+|..+..++ +|.+.+. .+.|- .+-+..|.=|||+|.++|+
T Consensus 147 kATAGLRlL~~~ka~~IL~aVre~l~~~s~f~v~~d~VsIm~GtdEGv~aWiTiN~Llg~L~~~~~~tvgv~DLGGGSTQ 226 (453)
T KOG1385|consen 147 KATAGLRLLPGSKADNILQAVRELLKNDSPFPVVEDAVSIMDGTDEGVYAWITINYLLGTLGAPGHRTVGVVDLGGGSTQ 226 (453)
T ss_pred EeecccccCChhHHHHHHHHHHHHHhccCCccccCCceeeccCcccceeeeeehhhhhcccCCCCCCceEEEEcCCceEE
Confidence 322 2222334444444554333332 3444432 22222 2234678889999999999
Q ss_pred EE
Q psy9135 870 LL 871 (1107)
Q Consensus 870 v~ 871 (1107)
++
T Consensus 227 i~ 228 (453)
T KOG1385|consen 227 IT 228 (453)
T ss_pred EE
Confidence 86
No 193
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=20.09 E-value=1.3e+02 Score=33.28 Aligned_cols=45 Identities=11% Similarity=0.047 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhccccCCCCceEEEEeccCCchHHHHHHHHHHhcccCc
Q psy9135 787 YGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEV 837 (1107)
Q Consensus 787 ~d~le~i~~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~eiLFE~~~v 837 (1107)
.|.++.|=+++|. .+++||||+.-...+.++.++|+++|-|.||=
T Consensus 75 ~dv~~aI~~~AF~------~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 119 (257)
T cd08626 75 KDVIQAIKDTAFV------TSDYPVILSFENHCSKPQQYKLAKYCEEIFGD 119 (257)
T ss_pred HHHHHHHHHHhcc------cCCCCEEEEEeccCCHHHHHHHHHHHHHHHhH
Confidence 4667777778883 37899999999999999999999999998884
Done!