RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9135
(1107 letters)
>gnl|CDD|218900 pfam06105, Aph-1, Aph-1 protein. This family consists of several
eukaryotic Aph-1 proteins.Gamma-secretase catalyzes the
intramembrane proteolysis of Notch, beta-amyloid
precursor protein, and other substrates as part of a new
signaling paradigm and as a key step in the pathogenesis
of Alzheimer's disease. It is thought that the
presenilin heterodimer comprises the catalytic site and
that a highly glycosylated form of nicastrin associates
with it. Aph-1 and Pen-2, two membrane proteins
genetically linked to gamma-secretase, associate
directly with presenilin and nicastrin in the active
protease complex. Co-expression of all four proteins
leads to marked increases in presenilin heterodimers,
full glycosylation of nicastrin, and enhanced
gamma-secretase activity.
Length = 237
Score = 212 bits (542), Expect = 2e-62
Identities = 87/185 (47%), Positives = 126/185 (68%), Gaps = 2/185 (1%)
Query: 559 TYMEFLGCTMTAFGPVIAMFLTTIMQDPVKVIILVASAFAWLLSLLLSSIVWFVIR-YQC 617
T F GCT AFGP +A+FL TI +DP++VI+L+A +F WL+SLL+SS+VWF++ +
Sbjct: 1 TVAVFFGCTFIAFGPALALFLLTIARDPLRVILLIAGSFFWLVSLLISSLVWFIVVPLRD 60
Query: 618 NIIFGVVISVLCQEAFRYILYLILQKSRGGLQYVSDRNTM-DNTYAMAYVSGLGYGTISA 676
+ FG++ SVL QE FRY Y +L+K+ GL ++D+ + + + +AYVSGLG+G IS
Sbjct: 61 KLAFGILFSVLFQELFRYAYYRLLKKAEEGLDSIADQGQIPIDKHQLAYVSGLGFGVISG 120
Query: 677 AFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLK 736
FSL+N+L SGPGT+GL G+SQYF T++ T LLH FW ++FF G E + +
Sbjct: 121 VFSLVNILADSSGPGTVGLHGDSQYFFLTSAFITLAIILLHTFWGVIFFDGCEKRKYSHI 180
Query: 737 TGVVL 741
VV+
Sbjct: 181 AFVVV 185
>gnl|CDD|200935 pfam00022, Actin, Actin.
Length = 367
Score = 105 bits (265), Expect = 3e-24
Identities = 89/403 (22%), Positives = 146/403 (36%), Gaps = 85/403 (21%)
Query: 739 VVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYEYKDADDLYGLLIEFIRKI- 797
+V+D GS TK G G P+ I S V P + Y D +E I
Sbjct: 6 LVIDNGSGTTKAGFAGEDAPRAVIPSVVGRPRGRGVMVKYYVGDEALSKRPGLEVRYPIE 65
Query: 798 -----------------FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSL 840
FF+ P++ +++ E L P R +++F+ + V +L
Sbjct: 66 DGIVENWDAMEKIWEHTFFEELRVDPEEHPLLLTEPPLNPPANREKATEIMFETFGVPAL 125
Query: 841 LYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRS 900
++S G TGLV+D G +++PVYEG + A + L G + ++R
Sbjct: 126 YLAKQAVLSAYASGRTTGLVVDSGAGVTSVVPVYEGYVLQKAIRRSDL-AGDDLTDYLRK 184
Query: 901 LLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIAAKNPDHKYPS 960
LL + E + ++ DIK C+V+ A+ +P
Sbjct: 185 LL------SSRTYSFNTYAE------EEVVRDIKESLCYVSDDPFGDTAASSSPPTV--- 229
Query: 961 GFMYPLKNGKKIPVSGHIRETAFEVLFELDL---DMLNIATIILDSLLSVASSDGREETQ 1017
Y L +G I + G+ R E+LF L + I +I DS+
Sbjct: 230 --SYELPDGYVIIL-GNERFRVPEILFNPSLIGSESAGIPELIYDSIN------------ 274
Query: 1018 YFPFRCWVNTRTPEKLCCLVGWSNICC------------------YKLFIKNFKF--HEF 1057
C V+ R P L +NI +L K
Sbjct: 275 ----ACDVDLR-PSLL------ANIVVTGGTTLFPGFTERLEKELAQLAPSGVKVKIIAP 323
Query: 1058 PAKENYVAWLGGAIFAATESYNKRAIQKDVYLNN--NVIPDWC 1098
P + Y AW+GG+I A+ ++ + + K Y + +V+ C
Sbjct: 324 PNERKYSAWIGGSILASLGTFQQMWVSKQEYEEHGSSVVERKC 366
Score = 103 bits (258), Expect = 2e-23
Identities = 90/412 (21%), Positives = 147/412 (35%), Gaps = 94/412 (22%)
Query: 45 VVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYEYKDADDLYGLLIEFIRKI- 103
+V+D GS TK G G P+ I S V P + Y D +E I
Sbjct: 6 LVIDNGSGTTKAGFAGEDAPRAVIPSVVGRPRGRGVMVKYYVGDEALSKRPGLEVRYPIE 65
Query: 104 -----------------FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSL 146
FF+ P++ +++ E L P R +++F+ + V +L
Sbjct: 66 DGIVENWDAMEKIWEHTFFEELRVDPEEHPLLLTEPPLNPPANREKATEIMFETFGVPAL 125
Query: 147 LYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRG 206
++S G TGLV+D G +++PVYEG + A + L G + ++R
Sbjct: 126 YLAKQAVLSAYASGRTTGLVVDSGAGVTSVVPVYEGYVLQKAIRRSDLAGDDLTDYLR-- 183
Query: 207 QSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIAA 266
K L + T + E ++ DIK C+V+ A+
Sbjct: 184 ---------------KLLSSRTYSFNTYAEEE-----VVRDIKESLCYVSDDPFGDTAAS 223
Query: 267 KNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDL---DMLNIATIILDSLLSVA 323
+P Y L +G I + G+ R E+LF L + I +I DS+
Sbjct: 224 SSPPTV-----SYELPDGYVIIL-GNERFRVPEILFNPSLIGSESAGIPELIYDSIN--- 274
Query: 324 SSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICC------------------YKLFIK 365
C V+ R P L +NI +L
Sbjct: 275 -------------ACDVDLR-PSLL------ANIVVTGGTTLFPGFTERLEKELAQLAPS 314
Query: 366 NFKF--HEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLNN--NVIPDWC 413
K P + Y AW+GG+I A+ ++ + + K Y + +V+ C
Sbjct: 315 GVKVKIIAPPNERKYSAWIGGSILASLGTFQQMWVSKQEYEEHGSSVVERKC 366
Score = 80.3 bits (199), Expect = 7e-16
Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 11/123 (8%)
Query: 434 VSGHIRETAFEVLFELDL---DMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPG 490
+ G+ R E+LF L + I +I DS+ D++ L NI++TGGT + PG
Sbjct: 240 ILGNERFRVPEILFNPSLIGSESAGIPELIYDSINACDVDLRPSLLANIVVTGGTTLFPG 299
Query: 491 LKYRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQK 550
RL +EL L S K P + Y AW+GG+I A+ ++ + + K
Sbjct: 300 FTERLEKELAQLAPSGVK--------VKIIAPPNERKYSAWIGGSILASLGTFQQMWVSK 351
Query: 551 DAY 553
Y
Sbjct: 352 QEY 354
>gnl|CDD|214592 smart00268, ACTIN, Actin. ACTIN subfamily of
ACTIN/mreB/sugarkinase/Hsp70 superfamily.
Length = 373
Score = 89.6 bits (223), Expect = 6e-19
Identities = 80/409 (19%), Positives = 140/409 (34%), Gaps = 80/409 (19%)
Query: 23 VVLDIGSKYTKYGIFGSFQPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRN 82
+V+D GS K G G P+ V I + F+ + ++ R
Sbjct: 4 IVIDNGSGTIKAGFAGEDFPQVVFPSIVGRPKDGKGMVGDAKDIFVGDEAQEK-----RG 58
Query: 83 LYEYKDADDLYGLLI------EFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKV 136
E K + G++ + FF P++ +++ E + P R + ++
Sbjct: 59 GLELKYPIEN-GIVENWDDMEKIWDYTFFNELRVEPEEHPVLLTEPPMNPKSNREKILEI 117
Query: 137 LFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGG 196
+F+ + +L ++SL G TGLV+D G ++PV +G + A K + + G
Sbjct: 118 MFETFNFPALYIAIQAVLSLYASGRTTGLVIDSGDGVTHVVPVVDGYVLPHAIKRIDIAG 177
Query: 197 QSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT 256
+ + D +K L + Y I+ +IK C+V
Sbjct: 178 RD------------------ITDYLKELLSERGYQFNSSA----EFEIVREIKEKLCYVA 215
Query: 257 TMERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFE---LDLDMLNIAT 313
A+ Y L +G I V G+ R E+LF + L+ I
Sbjct: 216 EDFEKEMKLARESSESSKLEKTYELPDGNTIKV-GNERFRIPEILFSPELIGLEQKGIHE 274
Query: 314 IILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNI------CCY------- 360
++ +S+ C ++ R L + NI
Sbjct: 275 LVYESIQK----------------CDIDVRKD--L-----YENIVLSGGSTLIPGFGERL 311
Query: 361 -----KLFIKNFKFHEF-PAKENYVAWLGGAIFAATESYNKRAIQKDVY 403
+L K K P + Y WLGG+I A+ ++ I K Y
Sbjct: 312 EKELKQLAPKKLKVKVIAPPERKYSVWLGGSILASLSTFEDMWITKKEY 360
Score = 89.6 bits (223), Expect = 7e-19
Identities = 79/395 (20%), Positives = 135/395 (34%), Gaps = 83/395 (21%)
Query: 739 VVLDIGSKYTKYGIFGSFQPKGFIKSQV-KDPHTNKL----------------RNLYEYK 781
+V+D GS K G G P+ S V + + R E K
Sbjct: 4 IVIDNGSGTIKAGFAGEDFPQVVFPSIVGRPKDGKGMVGDAKDIFVGDEAQEKRGGLELK 63
Query: 782 DADDLYGLLI------EFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHY 835
+ G++ + FF P++ +++ E + P R + +++F+ +
Sbjct: 64 YPIEN-GIVENWDDMEKIWDYTFFNELRVEPEEHPVLLTEPPMNPKSNREKILEIMFETF 122
Query: 836 EVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVE 895
+L ++SL G TGLV+D G ++PV +G + A K + + G
Sbjct: 123 NFPALYIAIQAVLSLYASGRTTGLVIDSGDGVTHVVPVVDGYVLPHAIKRIDIAGRD--- 179
Query: 896 SHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIAAKNPD 955
+ D +K L + Y I+ +IK C+V A+
Sbjct: 180 ------ITDYLKELLSERGYQFNSSA----EFEIVREIKEKLCYVAEDFEKEMKLARESS 229
Query: 956 HKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFE---LDLDMLNIATIILDSLLSVASSDG 1012
Y L +G I V G+ R E+LF + L+ I ++ +S+
Sbjct: 230 ESSKLEKTYELPDGNTIKV-GNERFRIPEILFSPELIGLEQKGIHELVYESIQK------ 282
Query: 1013 REETQYFPFRCWVNTRTPEKLCCLVGWSNI------CCY------------KLFIKNFKF 1054
C ++ R L + NI +L K K
Sbjct: 283 ----------CDIDVRKD--L-----YENIVLSGGSTLIPGFGERLEKELKQLAPKKLKV 325
Query: 1055 HEF-PAKENYVAWLGGAIFAATESYNKRAIQKDVY 1088
P + Y WLGG+I A+ ++ I K Y
Sbjct: 326 KVIAPPERKYSVWLGGSILASLSTFEDMWITKKEY 360
Score = 71.5 bits (176), Expect = 6e-13
Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 12/118 (10%)
Query: 439 RETAFEVLFE---LDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRL 495
R E+LF + L+ I ++ +S+ K D++K L ENI+L+GG+ + PG RL
Sbjct: 252 RFRIPEILFSPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERL 311
Query: 496 LQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAY 553
+EL+ L P K K+ + P + Y WLGG+I A+ ++ I K Y
Sbjct: 312 EKELKQLA---PKKLKVKVIA------PPERKYSVWLGGSILASLSTFEDMWITKKEY 360
>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional.
Length = 378
Score = 67.9 bits (166), Expect = 8e-12
Identities = 54/278 (19%), Positives = 107/278 (38%), Gaps = 31/278 (11%)
Query: 19 EKTGVVLDIGSKYTKYGIFGSFQPKGVVLDIGSKYTKYGIF-GSFQPKGFIKSQVKDPH- 76
E V+D GS K G G P+ V I + GI G + ++ + +D
Sbjct: 5 ETNAAVVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPGIMVGMEEKDCYVGDEAQDKRG 64
Query: 77 TNKLRNLYEYKDADDLYGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKV 136
L+ E+ + + + F+ +P++ +++ E+ L P R + ++
Sbjct: 65 ILTLKYPIEHGIVTNWDDME-KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 123
Query: 137 LFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGG 196
+F+ + V ++ ++SL G TG+VLD G + +P+YEG + A L + G
Sbjct: 124 MFETHNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYSLPHAIHRLDVAG 183
Query: 197 QSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT 256
+ L + + + + T I+ DIK C++
Sbjct: 184 R------------------DLTEYMMKILHERGTTFTT----TAEKEIVRDIKEKLCYIA 221
Query: 257 -----TMERSAEIAAKNPD-HKYPSGFMYPLKNGKKIP 288
M SA + K + ++ P G + + + +
Sbjct: 222 LDFDEEMGNSAGSSDKYEESYELPDGTIITVGSERFRC 259
Score = 63.6 bits (155), Expect = 2e-10
Identities = 59/263 (22%), Positives = 103/263 (39%), Gaps = 42/263 (15%)
Query: 740 VLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYEYKD------ADDLYGLL--- 790
V+D GS K G G P+ S V P + E KD A D G+L
Sbjct: 10 VVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPGIMVGMEEKDCYVGDEAQDKRGILTLK 69
Query: 791 --IEF--------IRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYE 836
IE + KI F+ +P++ +++ E+ L P R + +++F+ +
Sbjct: 70 YPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHN 129
Query: 837 VLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVES 896
V ++ ++SL G TG+VLD G + +P+YEG + A L + G
Sbjct: 130 VPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYSLPHAIHRLDVAG------ 183
Query: 897 HIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT-----TMERSAEIAA 951
L + + + + T I+ DIK C++ M SA +
Sbjct: 184 ---RDLTEYMMKILHERGTTFTT----TAEKEIVRDIKEKLCYIALDFDEEMGNSAGSSD 236
Query: 952 KNPD-HKYPSGFMYPLKNGKKIP 973
K + ++ P G + + + +
Sbjct: 237 KYEESYELPDGTIITVGSERFRC 259
Score = 55.2 bits (133), Expect = 1e-07
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 11/99 (11%)
Query: 456 IATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLLQELRTLIESPPYKDKLFIK 515
I + S+ K D++K L NI+L+GGT M GL RL +EL TL S
Sbjct: 277 IHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPS---------- 326
Query: 516 NFKFH-EFPAKENYVAWLGGAIFAATESYNKRAIQKDAY 553
K P + Y W+GG+I ++ ++ + + K+ Y
Sbjct: 327 TMKIKVVAPPERKYSVWIGGSILSSLPTFQQMWVTKEEY 365
>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton].
Length = 444
Score = 62.4 bits (152), Expect = 7e-10
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 452 DMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLLQELRTLIESPPYKDK 511
D+ + ++ S+ D++K L NI+LTGGT+ PG RL +EL +L P K
Sbjct: 339 DIAGLPELVYQSIQICDEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSL---APSIWK 395
Query: 512 LFIKNFKFHEFPAKE-NYVAWLGGAIFAATESYNKRAIQKDAY 553
+ + P + + AWLG +I A+ E++ + I K+ Y
Sbjct: 396 VSV-------IPPPDPSLDAWLGASILASLETFQQLWITKEEY 431
Score = 60.5 bits (147), Expect = 2e-09
Identities = 45/192 (23%), Positives = 79/192 (41%), Gaps = 14/192 (7%)
Query: 23 VVLDIGSKYTKYGIFGSFQPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRN 82
+V+D GS TK G G+ P V S + S K R+
Sbjct: 9 IVIDNGSGTTKAGFAGNDTPTTV---FPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRD 65
Query: 83 --LYEYKDADDL-----YGLLIEFIRKIFFKYFV--TSPKDKRIVVVESVLTPTVWRNTL 133
L E + + + + + FF SP++ +++ E L P R +
Sbjct: 66 NSLLELRYPIENGIILNWDAMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKI 125
Query: 134 AKVLFKHYEVLSLLYVPSHLVSLCTLG--VNTGLVLDIGYSEATLLPVYEGVPVLCAWKD 191
++LF+ V +L ++SL G TGLV+D G S ++PV +G+ + A K
Sbjct: 126 TELLFETLNVPALYLAIQAVLSLYASGSSDETGLVIDSGDSVTHVIPVVDGIVLPKAVKR 185
Query: 192 LSLGGQSVEAHI 203
+ +GG+ + ++
Sbjct: 186 IDIGGRDITDYL 197
Score = 53.6 bits (129), Expect = 3e-07
Identities = 53/226 (23%), Positives = 92/226 (40%), Gaps = 35/226 (15%)
Query: 739 VVLDIGSKYTKYGIFGSFQPKGFIKSQVKDP-------------------HTNKLRN--L 777
+V+D GS TK G G+ P S V R+ L
Sbjct: 9 IVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDNSL 68
Query: 778 YEYKDADDL-----YGLLIEFIRKIFFKYFV--TSPKDKRIVVVESVLTPTVWRNTLAKV 830
E + + + + + FF SP++ +++ E L P R + ++
Sbjct: 69 LELRYPIENGIILNWDAMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITEL 128
Query: 831 LFKHYEVLSLLYVPSHLVSLCTLG--VNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSL 888
LF+ V +L ++SL G TGLV+D G S ++PV +G+ + A K + +
Sbjct: 129 LFETLNVPALYLAIQAVLSLYASGSSDETGLVIDSGDSVTHVIPVVDGIVLPKAVKRIDI 188
Query: 889 GGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIK 934
GG + +++ LL ++ Y + E VE S+ I+ +IK
Sbjct: 189 GGRDITD-YLKKLLREKYPPSRG---YNLKSELVEYSSE-IVNEIK 229
>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional.
Length = 376
Score = 57.4 bits (138), Expect = 2e-08
Identities = 91/391 (23%), Positives = 155/391 (39%), Gaps = 75/391 (19%)
Query: 738 GVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDP-HTNKL-----RNLYEYKDADDLYGLL- 790
+V+D GS K G G P+ S V P HT + ++ Y +A G+L
Sbjct: 8 ALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRGILT 67
Query: 791 ----IEF--------IRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKH 834
IE + KI F+ +P++ +++ E+ L P R + +++F+
Sbjct: 68 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127
Query: 835 YEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSV 894
+ ++ ++SL G TG+V+D G + +P+YEG + A L L G
Sbjct: 128 FNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAG---- 183
Query: 895 ESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT-----TMERSAEI 949
R L +K L T + E I+ DIK +V M+ +A
Sbjct: 184 ----RDLTDYMMKILTERGYSFTTTAERE-----IVRDIKEKLAYVALDFEAEMQTAASS 234
Query: 950 AAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETAFEVLFELDLDMLNIA 997
+A ++ P G + + N + + P S I ET + + + D+D
Sbjct: 235 SALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVD----- 289
Query: 998 TIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEF 1057
I D +V S G T FP + R ++L L + + IK
Sbjct: 290 -IRKDLYGNVVLSGG---TTMFP---GIADRMNKELTALAPST------MKIKIIA---- 332
Query: 1058 PAKENYVAWLGGAIFAATESYNKRAIQKDVY 1088
P + Y W+GG+I A+ ++ + I K+ Y
Sbjct: 333 PPERKYSVWIGGSILASLSTFQQMWISKEEY 363
Score = 56.2 bits (135), Expect = 5e-08
Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 12/113 (10%)
Query: 444 EVLFE---LDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLLQELR 500
E LF+ L ++ I +S++K D++K L N++L+GGT M PG+ R+ +EL
Sbjct: 260 EALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELT 319
Query: 501 TLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAY 553
L S K K+ P + Y W+GG+I A+ ++ + I K+ Y
Sbjct: 320 ALAPS-TMKIKIIA--------PPERKYSVWIGGSILASLSTFQQMWISKEEY 363
Score = 55.9 bits (134), Expect = 6e-08
Identities = 89/408 (21%), Positives = 162/408 (39%), Gaps = 72/408 (17%)
Query: 19 EKTGVVLDIGSKYTKYGIFGSFQPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTN 78
+ +V+D GS K G G P+ V I + G+ K S V D +
Sbjct: 5 DVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKD---SYVGDEAQS 61
Query: 79 KLRNLYEYKDADDLYGLLIEF--IRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNT 132
K R + K + +G++ + + KI F+ +P++ +++ E+ L P R
Sbjct: 62 K-RGILTLKYPIE-HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 119
Query: 133 LAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDL 192
+ +++F+ + ++ ++SL G TG+V+D G + +P+YEG + A L
Sbjct: 120 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRL 179
Query: 193 SLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCS 252
L G+ + ++ +K L T + E I+ DIK
Sbjct: 180 DLAGRDLTDYM-----------------MKILTERGYSFTTTAERE-----IVRDIKEKL 217
Query: 253 CFVT-----TMERSAEIAAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRE 295
+V M+ +A +A ++ P G + + N + + P S I E
Sbjct: 218 AYVALDFEAEMQTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHE 277
Query: 296 TAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWS 355
T + + + D+D I D +V S G T FP + R ++L L +
Sbjct: 278 TTYNSIMKCDVD------IRKDLYGNVVLSGG---TTMFP---GIADRMNKELTALAPST 325
Query: 356 NICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVY 403
+ IK P + Y W+GG+I A+ ++ + I K+ Y
Sbjct: 326 ------MKIKIIA----PPERKYSVWIGGSILASLSTFQQMWISKEEY 363
>gnl|CDD|240426 PTZ00466, PTZ00466, actin-like protein; Provisional.
Length = 380
Score = 54.6 bits (131), Expect = 2e-07
Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 12/121 (9%)
Query: 436 GHIRETAFEVLFE---LDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLK 492
G R A EVLF L L+ L ++ +I+ S+ + D+++ L +I+L+GGT M G
Sbjct: 256 GSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFG 315
Query: 493 YRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDA 552
RLL E+R P + I P + + ++GG+I A+ ++ K I K
Sbjct: 316 DRLLNEIRKF---APKDITIRISA------PPERKFSTFIGGSILASLATFKKIWISKQE 366
Query: 553 Y 553
+
Sbjct: 367 F 367
Score = 52.6 bits (126), Expect = 6e-07
Identities = 84/400 (21%), Positives = 155/400 (38%), Gaps = 82/400 (20%)
Query: 41 QPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLR------NLYEYKDADDLYG 94
QP +++D G+ Y K G G P S V P ++ N++ A++ G
Sbjct: 13 QP--IIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYRG 70
Query: 95 LL----------------IEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLF 138
LL +E I + + ++ +++ E+ L P + +A+V F
Sbjct: 71 LLKVTYPINHGIIENWNDMENIWIHVYNSMKINSEEHPVLLTEAPLNPQKNKEKIAEVFF 130
Query: 139 KHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQS 198
+ + V +L ++SL + G G VLD G + +YEG + + G+
Sbjct: 131 ETFNVPALFISIQAILSLYSCGKTNGTVLDCGDGVCHCVSIYEGYSITNTITRTDVAGRD 190
Query: 199 VEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT-T 257
+ ++ L+ + L N T ++E +++++K C+V+
Sbjct: 191 ITTYL-----------GYLLRKNGHLFN------TSAEME-----VVKNMKENCCYVSFN 228
Query: 258 MERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFE---LDLDMLNIATI 314
M + KN K + Y L +G +I + G R A EVLF L L+ L ++ +
Sbjct: 229 MNKE-----KNSSEKALTTLPYILPDGSQILI-GSERYRAPEVLFNPSILGLEYLGLSEL 282
Query: 315 ILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNIC----------CYKLFI 364
I+ S ++ A D R RT L G + + K
Sbjct: 283 IVTS-ITRADMDLR--------------RTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAP 327
Query: 365 KNFKFH-EFPAKENYVAWLGGAIFAATESYNKRAIQKDVY 403
K+ P + + ++GG+I A+ ++ K I K +
Sbjct: 328 KDITIRISAPPERKFSTFIGGSILASLATFKKIWISKQEF 367
Score = 51.9 bits (124), Expect = 1e-06
Identities = 82/387 (21%), Positives = 154/387 (39%), Gaps = 71/387 (18%)
Query: 739 VVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLR------NLYEYKDADDLYGLL-- 790
+++D G+ Y K G G P S V P ++ N++ A++ GLL
Sbjct: 15 IIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYRGLLKV 74
Query: 791 --------------IEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYE 836
+E I + + ++ +++ E+ L P + +A+V F+ +
Sbjct: 75 TYPINHGIIENWNDMENIWIHVYNSMKINSEEHPVLLTEAPLNPQKNKEKIAEVFFETFN 134
Query: 837 VLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVES 896
V +L ++SL + G G VLD G + +YEG + + G+ + +
Sbjct: 135 VPALFISIQAILSLYSCGKTNGTVLDCGDGVCHCVSIYEGYSITNTITRTDV-AGRDITT 193
Query: 897 HIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT-TMERSAEIAAKNPD 955
++ L+ + L N T ++E +++++K C+V+ M + KN
Sbjct: 194 YL-GYLLRKNGHLFN------TSAEME-----VVKNMKENCCYVSFNMNKE-----KNSS 236
Query: 956 HKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFE---LDLDMLNIATIILDSLLSVASSDG 1012
K + Y L +G +I + G R A EVLF L L+ L ++ +I+ S ++ A D
Sbjct: 237 EKALTTLPYILPDGSQILI-GSERYRAPEVLFNPSILGLEYLGLSELIVTS-ITRADMDL 294
Query: 1013 REETQYFPFRCWVNTRTPEKLCCLVGWSNIC----------CYKLFIKNFKFH-EFPAKE 1061
R RT L G + + K K+ P +
Sbjct: 295 R--------------RTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPER 340
Query: 1062 NYVAWLGGAIFAATESYNKRAIQKDVY 1088
+ ++GG+I A+ ++ K I K +
Sbjct: 341 KFSTFIGGSILASLATFKKIWISKQEF 367
>gnl|CDD|185631 PTZ00452, PTZ00452, actin; Provisional.
Length = 375
Score = 52.1 bits (124), Expect = 1e-06
Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 444 EVLFELDLDMLNIATI---ILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLLQELR 500
E+LF+ L L +A I S+ K D+++ L NI+L+GGT + PG+ RL EL
Sbjct: 259 EILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELT 318
Query: 501 TLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAY 553
L+ P + K+ + P + AW+GG+I + + I++ Y
Sbjct: 319 NLV---PSQLKIQVAA------PPDRRFSAWIGGSIQCTLSTQQPQWIKRQEY 362
Score = 50.5 bits (120), Expect = 3e-06
Identities = 47/191 (24%), Positives = 80/191 (41%), Gaps = 21/191 (10%)
Query: 18 AEKTGVVLDIGSKYTKYGIFGSFQPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQ------ 71
A+ VV+D GS Y K GI G P I + + S K + +
Sbjct: 3 AQYPAVVIDNGSGYCKIGIAGDDAPTSCFPAIVGRSKQNDGIFSTFNKEYYVGEEAQAKR 62
Query: 72 ----VKDPHTNKLRNLYEYKDADDLYGLLIEFI-RKIFFKYFVTSPKDKRIVVVESVLTP 126
+K+P N + N + DD IE I F+ SP+D+ + + ++ +
Sbjct: 63 GVLAIKEPIQNGIINSW-----DD-----IEIIWHHAFYNELCMSPEDQPVFMTDAPMNS 112
Query: 127 TVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVL 186
R + +++F+ + L ++SL T G GLV+D G +PV+EG +
Sbjct: 113 KFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGKTIGLVVDSGEGVTHCVPVFEGHQIP 172
Query: 187 CAWKDLSLGGQ 197
A ++L G+
Sbjct: 173 QAITKINLAGR 183
Score = 50.1 bits (119), Expect = 3e-06
Identities = 86/391 (21%), Positives = 151/391 (38%), Gaps = 75/391 (19%)
Query: 738 GVVLDIGSKYTKYGIFGSFQPKGFIKSQV---KDPHTNKLRNLYEY---KDADDLYGLL- 790
VV+D GS Y K GI G P + V K EY ++A G+L
Sbjct: 7 AVVIDNGSGYCKIGIAGDDAPTSCFPAIVGRSKQNDGIFSTFNKEYYVGEEAQAKRGVLA 66
Query: 791 ---------------IEFI-RKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKH 834
IE I F+ SP+D+ + + ++ + R + +++F+
Sbjct: 67 IKEPIQNGIINSWDDIEIIWHHAFYNELCMSPEDQPVFMTDAPMNSKFNRERMTQIMFET 126
Query: 835 YEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSV 894
+ L ++SL T G GLV+D G +PV+EG + A ++L G+
Sbjct: 127 FNTPCLYISNEAVLSLYTSGKTIGLVVDSGEGVTHCVPVFEGHQIPQAITKINL-AGRLC 185
Query: 895 ESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERS-----AEI 949
++ +L + +L P I I+++IK C+ + E
Sbjct: 186 TDYLTQILQELGYSLTEPHQRI------------IVKNIKERLCYTALDPQDEKRIYKES 233
Query: 950 AAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATI--ILDSLLSV 1007
+++ +K P G + +K+ +K S E+LF+ L L +A I + S +
Sbjct: 234 NSQDSPYKLPDGNILTIKS-QKFRCS--------EILFQPKLIGLEVAGIHHLAYSSIKK 284
Query: 1008 ASSDGREE----------TQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEF 1057
D R+E T FP + R +L +N+ +L I+
Sbjct: 285 CDLDLRQELCRNIVLSGGTTLFP---GIANRLSNEL------TNLVPSQLKIQVAA---- 331
Query: 1058 PAKENYVAWLGGAIFAATESYNKRAIQKDVY 1088
P + AW+GG+I + + I++ Y
Sbjct: 332 PPDRRFSAWIGGSIQCTLSTQQPQWIKRQEY 362
>gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional.
Length = 414
Score = 47.8 bits (114), Expect = 2e-05
Identities = 51/221 (23%), Positives = 87/221 (39%), Gaps = 41/221 (18%)
Query: 43 KGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLR-------NL-----YEYKDAD 90
VV+D G+ YTK G G+ +P I + + D R +L E A
Sbjct: 5 PVVVIDNGTGYTKMGYAGNTEPTYIIPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAAS 64
Query: 91 DLYGL-------LIE-------FIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKV 136
Y L ++E F + FKY P++ ++ E + P R A++
Sbjct: 65 KSYTLTYPMKHGIVEDWDLMEKFWEQCIFKYLRCEPEEHYFILTEPPMNPPENREYTAEI 124
Query: 137 LFKHYEVLSLLYVPSHLVSLC----------TLGVNTGLVLDIGYSEATLLPVYEGVPVL 186
+F+ + V L +++L G TG V+D G ++PV +G +
Sbjct: 125 MFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVVDGYVIG 184
Query: 187 CAWKDLSLGGQSVEAHIR-----RGQSVESHIRSLLIDEIK 222
+ K + L G+ + I+ RG+ + + LL IK
Sbjct: 185 SSIKHIPLAGRDITNFIQQMLRERGEPIPAEDILLLAQRIK 225
Score = 43.6 bits (103), Expect = 5e-04
Identities = 44/188 (23%), Positives = 74/188 (39%), Gaps = 36/188 (19%)
Query: 739 VVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLR-------NL-----YEYKDADDL 786
VV+D G+ YTK G G+ +P I + + D R +L E A
Sbjct: 7 VVIDNGTGYTKMGYAGNTEPTYIIPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAASKS 66
Query: 787 YGL-------LIE-------FIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLF 832
Y L ++E F + FKY P++ ++ E + P R A+++F
Sbjct: 67 YTLTYPMKHGIVEDWDLMEKFWEQCIFKYLRCEPEEHYFILTEPPMNPPENREYTAEIMF 126
Query: 833 KHYEVLSLLYVPSHLVSLC----------TLGVNTGLVLDIGYSEATLLPVYEGVPVLCA 882
+ + V L +++L G TG V+D G ++PV +G + +
Sbjct: 127 ETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVVDGYVIGSS 186
Query: 883 WKDLSLGG 890
K + L G
Sbjct: 187 IKHIPLAG 194
Score = 42.0 bits (99), Expect = 0.001
Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 13/109 (11%)
Query: 456 IATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLLQELRTLIE----------S 505
+ ++ D++ D ++PL +NI+L+GG+ M G RL +++R ++
Sbjct: 293 LPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVRKRVDRRLKKAEELSG 352
Query: 506 PPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAYL 554
K N H + Y W GG++ A++ + K K Y
Sbjct: 353 GKLKPIPIDVNVVSHPR---QRYAVWYGGSMLASSPEFEKVCHTKAEYD 398
>gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of
the sugar kinase/HSP70/actin superfamily. This
superfamily includes the actin family, the HSP70 family
of molecular chaperones and nucleotide exchange factors,
the ROK (repressor, ORF, kinase) family, the hexokinase
family, the FGGY family (which includes glycerol kinase
and similar carbohydrate kinases such as rhamnulokinase
and xylulokinase), the exopolyphosphatase/guanosine
pentaphosphate phosphohydrolase/nucleoside triphosphate
diphosphohydrolase family, propionate kinase/acetate
kinase family, glycerol dehydratase reactivase,
2-hydroxyglutaryl-CoA dehydratase component A,
N-acetylglucosamine kinase, butyrate kinase 2,
Escherichia coli YeaZ and similar glycoproteases, the
cell shape-determining protein MreB, the plasmid DNA
segregation factor ParM, cell cycle proteins FtsA, Pili
assembly protein PilM, ethanolamine utilization protein
EutJ, and similar proteins. The nucleotide-binding site
residues are conserved; the nucleotide sits in a deep
cleft formed between the two lobes of the
nucleotide-binding domain (NBD). Substrate binding to
superfamily members is associated with closure of this
catalytic site cleft. The functional activities of
several members of the superfamily, including
hexokinases, actin, and HSP70s, are modulated by
allosteric effectors, which may act on the cleft
closure.
Length = 185
Score = 43.0 bits (101), Expect = 3e-04
Identities = 31/169 (18%), Positives = 57/169 (33%), Gaps = 30/169 (17%)
Query: 45 VVLDIGSKYTKYGIF---GSFQPKGFIKSQVKDPHTNKLRNLYEYKDADDLYGLLIEFIR 101
+ +DIGS TK G+ G P+ + + V P A L E +R
Sbjct: 1 LGIDIGSTSTKAGVADLDGEILPEEIVPTPVGRPG------------AVTDLDELEEALR 48
Query: 102 KIFFKYFVTSPKDKR-IVVVESVLTPTVWRNTLAKVLFKHYEVL----SLLYVPSHLV-- 154
++ + + + + E P R + + L VP +V
Sbjct: 49 ELLKEALRQLKSEIDAVGITEPGGVPKENREVIILPNLLLIPLALALEDLGGVPVAVVND 108
Query: 155 SLCTL--------GVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLG 195
++ +T LV+D+G + V +G + A +L +
Sbjct: 109 AVAAALAEGLFGKEEDTVLVVDLGTGTTGIAIVEDGKGGVGAAGELGIA 157
Score = 43.0 bits (101), Expect = 3e-04
Identities = 31/169 (18%), Positives = 57/169 (33%), Gaps = 30/169 (17%)
Query: 739 VVLDIGSKYTKYGIF---GSFQPKGFIKSQVKDPHTNKLRNLYEYKDADDLYGLLIEFIR 795
+ +DIGS TK G+ G P+ + + V P A L E +R
Sbjct: 1 LGIDIGSTSTKAGVADLDGEILPEEIVPTPVGRPG------------AVTDLDELEEALR 48
Query: 796 KIFFKYFVTSPKDKR-IVVVESVLTPTVWRNTLAKVLFKHYEVL----SLLYVPSHLV-- 848
++ + + + + E P R + + L VP +V
Sbjct: 49 ELLKEALRQLKSEIDAVGITEPGGVPKENREVIILPNLLLIPLALALEDLGGVPVAVVND 108
Query: 849 SLCTL--------GVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLG 889
++ +T LV+D+G + V +G + A +L +
Sbjct: 109 AVAAALAEGLFGKEEDTVLVVDLGTGTTGIAIVEDGKGGVGAAGELGIA 157
>gnl|CDD|219577 pfam07787, DUF1625, Protein of unknown function (DUF1625).
Sequences making up this family are derived from
hypothetical proteins expressed by both prokaryotic and
eukaryotic species. The region in question is
approximately 250 residues long.
Length = 247
Score = 31.2 bits (71), Expect = 2.6
Identities = 20/100 (20%), Positives = 32/100 (32%), Gaps = 22/100 (22%)
Query: 529 VAWLGGAIFAATESYNKRAIQKDAYLNNNMTY--MEFLGCTMTAFGPVIAMFLTTIMQDP 586
+ L A E + K + N + + F G + G + L + +
Sbjct: 157 ILLLEPGELTAEEIFKKEVDE------NALLTWVLRFAGLILMFLG---LILLLSPLVVL 207
Query: 587 VKVIIL-----------VASAFAWLLSLLLSSIVWFVIRY 615
V VI L V+ + LSLL + W R
Sbjct: 208 VDVIPLLGPLVGGGFFIVSLIISISLSLLTIAFAWLFYRP 247
>gnl|CDD|173927 cd07766, DHQ_Fe-ADH, Dehydroquinate synthase-like (DHQ-like) and
iron-containing alcohol dehydrogenases (Fe-ADH).
Dehydroquinate synthase-like. This superfamily divides
into two subgroups: the dehydroquinate synthase-like,
and a large metal-containing alcohol dehydrogenases
(ADH), known as iron-containing alcohol dehydrogenases.
Dehydroquinate synthase (DHQS) catalyzes the conversion
of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to
dehydroquinate (DHQ) in the second step of the shikimate
pathway. This pathway involves seven sequential
enzymatic steps in the conversion of erythrose
4-phosphate and phosphoenolpyruvate into chorismate for
subsequent synthesis of aromatic compounds.
Dehydroquinate synthase-like group includes
dehydroquinate synthase, 2-deoxy-scyllo-inosose
synthase, and 2-epi-5-epi-valiolone synthase. The
alcohol dehydrogenases in this superfamily contain a
dehydroquinate synthase-like protein structural fold and
mostly contain iron. They are distinct from other
alcohol dehydrogenases which contains different protein
domains. There are several distinct families of alcohol
dehydrogenases: Zinc-containing long-chain alcohol
dehydrogenases; insect-type, or short-chain alcohol
dehydrogenases; iron-containing alcohol dehydrogenases,
and others. The iron-containing family has a Rossmann
fold-like topology that resembles the fold of the
zinc-dependent alcohol dehydrogenases, but lacks
sequence homology, and differs in strand arrangement.
ADH catalyzes the reversible oxidation of alcohol to
acetaldehyde with the simultaneous reduction of NAD(P)+
to NAD(P)H.
Length = 332
Score = 31.2 bits (71), Expect = 2.7
Identities = 22/106 (20%), Positives = 30/106 (28%), Gaps = 13/106 (12%)
Query: 33 KYGIFGSFQPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYEYKDADDL 92
K G F P V +D T G P + S D ++ L Y K + +
Sbjct: 133 KTGFFYPDNPDVVFVD-----TDI-TKGL--PPRQVASGGVDALSHALEA-YSTKKSWPI 183
Query: 93 YGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLF 138
L E + + L VW TLA
Sbjct: 184 ADALAEKALETIEEDL----PKAIEPGDYDALEKVVWAATLAGNGL 225
>gnl|CDD|212668 cd10225, MreB_like, MreB and similar proteins. MreB is a bacterial
protein which assembles into filaments resembling those
of eukaryotic F-actin. It is involved in determining the
shape of rod-like bacterial cells, by assembling into
large fibrous spirals beneath the cell membrane. MreB
has also been implicated in chromosome segregation;
specifically MreB is thought to bind to and segregate
the replication origin of bacterial chromosomes.
Length = 320
Score = 30.9 bits (71), Expect = 3.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 479 ILLTGGTAMTPGLKYRLLQEL 499
I+LTGG A+ GL + +E
Sbjct: 274 IVLTGGGALLRGLDELISEET 294
>gnl|CDD|227824 COG5537, IRR1, Cohesin [Cell division and chromosome partitioning].
Length = 740
Score = 31.0 bits (70), Expect = 4.4
Identities = 39/175 (22%), Positives = 63/175 (36%), Gaps = 31/175 (17%)
Query: 784 DDLYGLLIEFIRKIFFKYFVTSPKDKRIVV-VESVLTPTVWRNTLAKVLFK----HYEVL 838
D L+ + I+ I FV+ D V+ V ++ W + K Y
Sbjct: 262 DLNPSLIRDEIKDICDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGW 321
Query: 839 SL--------LYVPSHLVSLCTLGVNTGLV-----------LDIGYSEATLLPVYEGVPV 879
SL L V L+ LC+ +T + L+ +++ + + +
Sbjct: 322 SLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDRILEFLRTDSDCVRICS-IKS 380
Query: 880 LCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIK 934
LC + LG S E I S + +I PD VE VE++ E IK
Sbjct: 381 LCYLR--ILGVLSSSEILIVSSCMLDI----IPDSRENIVESVESICKIDAEVIK 429
Score = 29.9 bits (67), Expect = 9.2
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 90 DDLYGLLIEFIRKIFFKYFVTSPKDKRIVV-VESVLTPTVWRNTLAKVLFK 139
D L+ + I+ I FV+ D V+ V ++ W + K
Sbjct: 262 DLNPSLIRDEIKDICDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRK 312
>gnl|CDD|200477 cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in
cyclomaltodextrinases and related proteins.
Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase
(NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC
3.2.1.133) catalyze the hydrolysis of alpha-(1,4)
glycosidic linkages on a number of substrates including
cyclomaltodextrins (CDs), pullulan, and starch. These
enzymes hydrolyze CDs and starch to maltose and pullulan
to panose by cleavage of alpha-1,4 glycosidic bonds
whereas alpha-amylases essentially lack activity on CDs
and pullulan. They also catalyze transglycosylation of
oligosaccharides to the C3-, C4- or C6-hydroxyl groups
of various acceptor sugar molecules. Since these
proteins are nearly indistinguishable from each other,
they are referred to as cyclomaltodextrinases (CMDs).
The Alpha-amylase family comprises the largest family of
glycoside hydrolases (GH), with the majority of enzymes
acting on starch, glycogen, and related oligo- and
polysaccharides. These proteins catalyze the
transformation of alpha-1,4 and alpha-1,6 glucosidic
linkages with retention of the anomeric center. The
protein is described as having 3 domains: A, B, C. A is
a (beta/alpha) 8-barrel; B is a loop between the beta 3
strand and alpha 3 helix of A; C is the C-terminal
extension characterized by a Greek key. The majority of
the enzymes have an active site cleft found between
domains A and B where a triad of catalytic residues
(Asp, Glu and Asp) performs catalysis. Other members of
this family have lost the catalytic activity as in the
case of the human 4F2hc, or only have 2 residues that
serve as the catalytic nucleophile and the acid/base,
such as Thermus A4 beta-galactosidase with 2 Glu
residues (GH42) and human alpha-galactosidase with 2 Asp
residues (GH31). The family members are quite extensive
and include: alpha amylase, maltosyltransferase,
cyclodextrin glycotransferase, maltogenic amylase,
neopullulanase, isoamylase, 1,4-alpha-D-glucan
maltotetrahydrolase, 4-alpha-glucotransferase,
oligo-1,6-glucosidase, amylosucrase, sucrose
phosphorylase, and amylomaltase.
Length = 389
Score = 30.5 bits (70), Expect = 5.0
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 504 ESPPYKDKLFIKNFKFHEFPAKENYVAWLG 533
ES Y+D I F + NY +W G
Sbjct: 143 ESSAYQDWFSIYYFWPYFTDEPPNYESWWG 172
>gnl|CDD|177953 PLN02319, PLN02319, aminomethyltransferase.
Length = 404
Score = 30.1 bits (68), Expect = 6.6
Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 18/97 (18%)
Query: 187 CAWKDLSLGGQSVEAHIRRGQSVESHI---RSLLIDEIKALENPDPYIV----TVEDVEN 239
C KDL+ + ++A +G V H+ RSLL AL+ P V T ED+
Sbjct: 147 CRDKDLAHIEEHMKAFKAKGGDVSWHVHDERSLL-----ALQGPLAAPVLQHLTKEDLSK 201
Query: 240 L--SDSIIEDIKVCSCFVT----TMERSAEIAAKNPD 270
+ D I DI CF+T T E EI+ +
Sbjct: 202 MYFGDFRITDINGADCFLTRTGYTGEDGFEISVPSEH 238
>gnl|CDD|240299 PTZ00164, PTZ00164, bifunctional dihydrofolate
reductase-thymidylate synthase; Provisional.
Length = 514
Score = 30.0 bits (68), Expect = 8.7
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 201 AHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKV 250
AH+ +H+ +L +++ + P P + +VEN+ D IEDI+V
Sbjct: 456 AHV-----YSNHVDALKE-QLERVPYPFPTLKLKREVENIEDFTIEDIEV 499
>gnl|CDD|200430 TIGR04179, rhombo_lipo, rhombotail lipoprotein. Members of this
protein family are probable lipoproteins. Nearly every
member ends with a C-terminal region consisting of a
glycine-rich probable cleavage site, a hydrophobic
probable transmembrane helix, and a cluster of basic
residues, as described in putative protein sorting
region model TIGR03501. Furthermore, members tend to be
encoded next to a rhomboid family protease, called
rhombosortase (TIGR03902) predicted to perform a
C-terminal cleavage.
Length = 259
Score = 29.4 bits (66), Expect = 9.6
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 713 FSLLHVFWSIV---FFRGVEIKNRTLKTGVVLDIGSK 746
SLL +W+IV G E +TL V DI S+
Sbjct: 129 ASLL--YWTIVGAYVVPGNENDTQTLMDTAVFDIPSR 163
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.139 0.423
Gapped
Lambda K H
0.267 0.0771 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 57,349,488
Number of extensions: 5843486
Number of successful extensions: 5274
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5237
Number of HSP's successfully gapped: 79
Length of query: 1107
Length of database: 10,937,602
Length adjustment: 107
Effective length of query: 1000
Effective length of database: 6,191,724
Effective search space: 6191724000
Effective search space used: 6191724000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (28.3 bits)