RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9135
(1107 letters)
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]}
Length = 225
Score = 87.1 bits (215), Expect = 1e-19
Identities = 49/240 (20%), Positives = 86/240 (35%), Gaps = 34/240 (14%)
Query: 857 TGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYI 916
TG+VLD G +P+YEG + A L L G+ + ++ +L + +
Sbjct: 3 TGIVLDSGDGVTHNVPIYEGYALPHAIMRLDL-AGRDLTDYLMKILTERGYSFVTTA--- 58
Query: 917 VTVEDVENLSDSIIEDIKVCSCFV-TTMERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVS 975
I+ DIK C+V E AA + + Y L +G+ I +
Sbjct: 59 ---------EREIVRDIKEKLCYVALDFENEMATAASSSSLEKS----YELPDGQVITI- 104
Query: 976 GHIRETAFEVLFE---LDLDMLNIATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEK 1032
G+ R E LF+ + ++ I +S++ ++ + N
Sbjct: 105 GNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKD--------LYANNVMSGG 156
Query: 1033 LCCLVGWSNIC---CYKLFIKNFKFHEFPAKE-NYVAWLGGAIFAATESYNKRAIQKDVY 1088
G ++ L K E Y W+GG+I A+ ++ + I K Y
Sbjct: 157 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEY 216
Score = 85.5 bits (211), Expect = 3e-19
Identities = 53/249 (21%), Positives = 88/249 (35%), Gaps = 43/249 (17%)
Query: 163 TGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIK 222
TG+VLD G +P+YEG + A L L G+ + ++ K
Sbjct: 3 TGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLM-----------------K 45
Query: 223 ALENPDPYIVTVEDVENLSDSIIEDIKVCSCFV-TTMERSAEIAAKNPDHKYPSGFMYPL 281
L VT + E I+ DIK C+V E AA + + Y L
Sbjct: 46 ILTERGYSFVTTAERE-----IVRDIKEKLCYVALDFENEMATAASSSSLEKS----YEL 96
Query: 282 KNGKKIPVSGHIRETAFEVLFE---LDLDMLNIATIILDSLLSVASSDGREETQYFPFRC 338
+G+ I + G+ R E LF+ + ++ I +S++ ++
Sbjct: 97 PDGQVITI-GNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKD--------L 147
Query: 339 WVNTRTPEKLCCLVGWSNIC---CYKLFIKNFKFHEFPAKE-NYVAWLGGAIFAATESYN 394
+ N G ++ L K E Y W+GG+I A+ ++
Sbjct: 148 YANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQ 207
Query: 395 KRAIQKDVY 403
+ I K Y
Sbjct: 208 QMWITKQEY 216
Score = 72.8 bits (178), Expect = 8e-15
Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 12/121 (9%)
Query: 436 GHIRETAFEVLFE---LDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLK 492
G+ R E LF+ + ++ I +S++K D++K L N +++GGT M PG+
Sbjct: 105 GNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIA 164
Query: 493 YRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDA 552
R+ +E+ L S + P + Y W+GG+I A+ ++ + I K
Sbjct: 165 DRMQKEITALAPSTMKIKII---------APPERKYSVWIGGSILASLSTFQQMWITKQE 215
Query: 553 Y 553
Y
Sbjct: 216 Y 216
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 258
Score = 74.8 bits (183), Expect = 3e-15
Identities = 50/258 (19%), Positives = 80/258 (31%), Gaps = 29/258 (11%)
Query: 857 TGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYI 916
TG V+D G ++PV EG + K + + G+ + I+ LL D + I
Sbjct: 4 TGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPI-AGRDITYFIQQLLRDR-------EVGI 55
Query: 917 VTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSG 976
+ +E VC V + +K K +G K I V G
Sbjct: 56 PPEQSLETAKAVKERYSYVCPDLVKEFNKYDTDGSKWI--KQYTGINAISKKEFSIDV-G 112
Query: 977 HIRETAFEVLFELDLDMLNIATII---LDSLLSVASSDGREETQYFPFRCWVNT------ 1027
+ R E+ F + + I +D ++ D R +T
Sbjct: 113 YERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFG 172
Query: 1028 -RTPEKLCCLVG-----WSNICCYKLFIKNFKFHEFPAKE-NYVAWLGGAIFAATESYNK 1080
R L V + +L K Y W GG++ A+T + +
Sbjct: 173 RRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQ 232
Query: 1081 RAIQKDVYLNNNVIPDWC 1098
K Y P C
Sbjct: 233 VCHTKKDYEEIG--PSIC 248
Score = 72.9 bits (178), Expect = 1e-14
Identities = 48/267 (17%), Positives = 80/267 (29%), Gaps = 38/267 (14%)
Query: 163 TGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIK 222
TG V+D G ++PV EG + K + + G+ + I+ +
Sbjct: 4 TGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQ-----------------Q 46
Query: 223 ALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIAAKNPDHKYPSGFMYPLK 282
L + + I + +E VC V + +K K +G K
Sbjct: 47 LLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKYDTDGSKWI--KQYTGINAISK 104
Query: 283 NGKKIPVSGHIRETAFEVLFELDLDMLNIATII---LDSLLSVASSDGREETQYFPFRCW 339
I V G+ R E+ F + + I +D ++ D R
Sbjct: 105 KEFSIDV-GYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSG 163
Query: 340 VNT-------RTPEKLCCLVG-----WSNICCYKLFIKNFKFHEFPAKE-NYVAWLGGAI 386
+T R L V + +L K Y W GG++
Sbjct: 164 GSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSM 223
Query: 387 FAATESYNKRAIQKDVYLNNNVIPDWC 413
A+T + + K Y P C
Sbjct: 224 LASTPEFYQVCHTKKDYEEIG--PSIC 248
Score = 67.1 bits (163), Expect = 1e-12
Identities = 30/182 (16%), Positives = 67/182 (36%), Gaps = 17/182 (9%)
Query: 389 ATESYNKRAIQKDVYLNNNVIPDWCNLSVLGTDLKKSVNPYLHFPVS------GHIRETA 442
+ K ++ Y+ +++ ++ G+ K G+ R
Sbjct: 59 QSLETAKAVKERYSYVCPDLVKEFNKYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLG 118
Query: 443 FEVLFELDLDMLNIA----TIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLLQE 498
E+ F + + ++ + + D+++PL +NI+L+GG+ M RL ++
Sbjct: 119 PEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRD 178
Query: 499 LRTLIESPPY------KDKLFIKNFKFHEFPAKE-NYVAWLGGAIFAATESYNKRAIQKD 551
L+ +++ +L K Y W GG++ A+T + + K
Sbjct: 179 LKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKK 238
Query: 552 AY 553
Y
Sbjct: 239 DY 240
>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 158
Score = 61.2 bits (148), Expect = 2e-11
Identities = 27/150 (18%), Positives = 59/150 (39%), Gaps = 8/150 (5%)
Query: 23 VVLDIGSKYTKYGIFGSFQPKGVV-----LDIGSKYTKYGIFGSFQPKGFIKSQVKDPHT 77
V+D G+ YTK G G+ +P+ ++ + +K + + + D
Sbjct: 6 CVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAI 65
Query: 78 NKLRNLYEYKDADDL---YGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLA 134
K ++ + + L+ F+ ++ FKY P+D ++ E L R A
Sbjct: 66 EKPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTA 125
Query: 135 KVLFKHYEVLSLLYVPSHLVSLCTLGVNTG 164
+++F+ + V L +++L +
Sbjct: 126 EIMFESFNVPGLYIAVQAVLALAASWTSRQ 155
Score = 58.9 bits (142), Expect = 1e-10
Identities = 30/150 (20%), Positives = 57/150 (38%), Gaps = 30/150 (20%)
Query: 739 VVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL-----RNLYEYKDADDLY------ 787
V+D G+ YTK G G+ +P+ I S + + K+ R + + D D +
Sbjct: 6 CVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAI 65
Query: 788 -------------------GLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLA 828
L+ F+ ++ FKY P+D ++ E L R A
Sbjct: 66 EKPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTA 125
Query: 829 KVLFKHYEVLSLLYVPSHLVSLCTLGVNTG 858
+++F+ + V L +++L +
Sbjct: 126 EIMFESFNVPGLYIAVQAVLALAASWTSRQ 155
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 190
Score = 60.1 bits (145), Expect = 9e-11
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 436 GHIRETAFEVLFE---LDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLK 492
G R A E LF+ ++++ + +A ++ +++ D + ++I+L+GG+ M PGL
Sbjct: 102 GGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLP 161
Query: 493 YRLLQELRTLIESPPYK-DKLFIKNFK 518
RL +EL+ L K D + FK
Sbjct: 162 SRLERELKQLYLERVLKGDVEKLSKFK 188
Score = 53.2 bits (127), Expect = 2e-08
Identities = 31/152 (20%), Positives = 62/152 (40%), Gaps = 20/152 (13%)
Query: 858 GLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIV 917
G+V+D G + PVYEG + + L + G+ + ++ LL+ A + +
Sbjct: 1 GVVVDSGDGVTHICPVYEGFSLPHLTRRLDI-AGRDITRYLIKLLLLRGYAFNHSADF-- 57
Query: 918 TVEDVENLSDSIIEDIKVCSCFVTTMERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGH 977
+ IK C+V + K Y L +G+ I V G
Sbjct: 58 ----------ETVRMIKEKLCYVGYNIEQEQ---KLALETTVLVESYTLPDGRIIKV-GG 103
Query: 978 IRETAFEVLFE---LDLDMLNIATIILDSLLS 1006
R A E LF+ ++++ + +A ++ +++ +
Sbjct: 104 ERFEAPEALFQPHLINVEGVGVAELLFNTIQA 135
Score = 50.1 bits (119), Expect = 2e-07
Identities = 31/161 (19%), Positives = 63/161 (39%), Gaps = 29/161 (18%)
Query: 164 GLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKA 223
G+V+D G + PVYEG + + L + G+ + ++ + LL+ A
Sbjct: 1 GVVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRDITRYLIK----------LLLLRGYA 50
Query: 224 LENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIAAKNPDHKYPSGFMYPLKN 283
+ + + IK C+V + K Y L +
Sbjct: 51 FNHSADF------------ETVRMIKEKLCYVGYNIEQEQ---KLALETTVLVESYTLPD 95
Query: 284 GKKIPVSGHIRETAFEVLFE---LDLDMLNIATIILDSLLS 321
G+ I V G R A E LF+ ++++ + +A ++ +++ +
Sbjct: 96 GRIIKV-GGERFEAPEALFQPHLINVEGVGVAELLFNTIQA 135
>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]}
Length = 140
Score = 58.6 bits (141), Expect = 1e-10
Identities = 25/140 (17%), Positives = 57/140 (40%), Gaps = 3/140 (2%)
Query: 23 VVLDIGSKYTKYGIFGSFQPKGVV-LDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTN-KL 80
+V D GS K G G P+ V +G + + G Q ++ + + L
Sbjct: 2 LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 61
Query: 81 RNLYEYKDADDLYGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKH 140
+ E+ + + + + F+ +P++ ++ E+ L P R + +++F+
Sbjct: 62 KYPIEHGIITN-WDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFET 120
Query: 141 YEVLSLLYVPSHLVSLCTLG 160
+ V ++ ++SL G
Sbjct: 121 FNVPAMYVAIQAVLSLYASG 140
Score = 55.1 bits (132), Expect = 2e-09
Identities = 26/139 (18%), Positives = 51/139 (36%), Gaps = 23/139 (16%)
Query: 739 VVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL------RNLYEYKDADDLYGLL-- 790
+V D GS K G G P+ S V P + ++ Y +A G+L
Sbjct: 2 LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 61
Query: 791 ---------------IEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHY 835
+ F+ +P++ ++ E+ L P R + +++F+ +
Sbjct: 62 KYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETF 121
Query: 836 EVLSLLYVPSHLVSLCTLG 854
V ++ ++SL G
Sbjct: 122 NVPAMYVAIQAVLSLYASG 140
>d1c1la_ b.29.1.3 (A:) Congerin I {Conger eel (Conger myriaster)
[TaxId: 7943]}
Length = 135
Score = 31.8 bits (72), Expect = 0.15
Identities = 17/114 (14%), Positives = 36/114 (31%), Gaps = 22/114 (19%)
Query: 280 PLKNGKKIPVSGHIRETAFEVLFELDLDMLNIA--------------TIILDSLLSVASS 325
GK + V G I + + M +++ TI+++S L +
Sbjct: 9 DFTVGKFLTVGGFINNSPQRFSVNVGESMNSLSLHLDHRFNYGADQNTIVMNSTLKGDNG 68
Query: 326 DGREETQ-YFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENY 378
E+ F + + +I + + I + EFP + +
Sbjct: 69 WETEQRSTNFTLS-------AGQYFEITLSYDINKFYIDILDGPNLEFPNRYSK 115
Score = 31.8 bits (72), Expect = 0.15
Identities = 17/114 (14%), Positives = 36/114 (31%), Gaps = 22/114 (19%)
Query: 965 PLKNGKKIPVSGHIRETAFEVLFELDLDMLNIA--------------TIILDSLLSVASS 1010
GK + V G I + + M +++ TI+++S L +
Sbjct: 9 DFTVGKFLTVGGFINNSPQRFSVNVGESMNSLSLHLDHRFNYGADQNTIVMNSTLKGDNG 68
Query: 1011 DGREETQ-YFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENY 1063
E+ F + + +I + + I + EFP + +
Sbjct: 69 WETEQRSTNFTLS-------AGQYFEITLSYDINKFYIDILDGPNLEFPNRYSK 115
>d1is3a_ b.29.1.3 (A:) Congerin II {Conger eel (Conger myriaster)
[TaxId: 7943]}
Length = 134
Score = 29.9 bits (67), Expect = 0.73
Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 21/108 (19%)
Query: 280 PLKNGKKIPVSGHIRETAFEVLFELDLDMLNIA--------------TIILDSLLSVASS 325
P K G + V G + A + +IA ++L+SL+
Sbjct: 9 PFKLGMYLTVGGVVNSNATRFSINVGESTDSIAMHMDHRFSYGADQNVLVLNSLVHNVGW 68
Query: 326 DGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFP 373
E ++ FPF + + + + N + EFP
Sbjct: 69 QQEERSKKFPFT-------KGDHFQTTITFDTHTFYIQLSNGETVEFP 109
Score = 29.9 bits (67), Expect = 0.73
Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 21/108 (19%)
Query: 965 PLKNGKKIPVSGHIRETAFEVLFELDLDMLNIA--------------TIILDSLLSVASS 1010
P K G + V G + A + +IA ++L+SL+
Sbjct: 9 PFKLGMYLTVGGVVNSNATRFSINVGESTDSIAMHMDHRFSYGADQNVLVLNSLVHNVGW 68
Query: 1011 DGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFP 1058
E ++ FPF + + + + N + EFP
Sbjct: 69 QQEERSKKFPFT-------KGDHFQTTITFDTHTFYIQLSNGETVEFP 109
>d2f7fa1 c.1.17.1 (A:141-485) Putative nicotinate
phosphoribosyltransferase EF2626 {Enterococcus faecalis
[TaxId: 1351]}
Length = 345
Score = 29.6 bits (66), Expect = 2.1
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 219 DEIKALENPDPYIVTV-EDVENLSDSIIEDIK 249
+E K NP Y V + D N +++E ++
Sbjct: 309 EEYKRDLNPQKYPVDLSTDCWNHKMNLLEKVR 340
Score = 29.6 bits (66), Expect = 2.1
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 904 DEIKALENPDPYIVTV-EDVENLSDSIIEDIK 934
+E K NP Y V + D N +++E ++
Sbjct: 309 EEYKRDLNPQKYPVDLSTDCWNHKMNLLEKVR 340
>d2dyja1 d.52.7.1 (A:4-94) Ribosome-binding factor A, RbfA {Thermus
thermophilus [TaxId: 274]}
Length = 91
Score = 27.4 bits (61), Expect = 2.4
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 209 VESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIAA 266
+E+ ++ L +EI+ALE+P +++TVE V + +D V S +V
Sbjct: 5 LEAQLKRALAEEIQALEDPRLFLLTVEAVR-----LSKDGSVLSVYVEAFREEEGALR 57
Score = 27.4 bits (61), Expect = 2.4
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 894 VESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIAA 951
+E+ ++ L +EI+ALE+P +++TVE V + +D V S +V
Sbjct: 5 LEAQLKRALAEEIQALEDPRLFLLTVEAVR-----LSKDGSVLSVYVEAFREEEGALR 57
>d1umrc_ d.169.1.1 (C:) Snake coagglutinin beta chain {South
american rattlesnake (Crotalus durissus terrificus),
convulxin [TaxId: 8732]}
Length = 125
Score = 27.4 bits (59), Expect = 5.4
Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 4/67 (5%)
Query: 349 CCLVGWS--NICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLNN 406
CC WS + CYK+F + + + A++ G+ + S + + +
Sbjct: 3 CCPSHWSSYDRYCYKVFKQEMTWAD--AEKFCTQQHTGSHLVSFHSTEEVDFVVKMTHQS 60
Query: 407 NVIPDWC 413
+
Sbjct: 61 LKSTFFW 67
Score = 27.4 bits (59), Expect = 5.4
Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 4/67 (5%)
Query: 1034 CCLVGWS--NICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLNN 1091
CC WS + CYK+F + + + A++ G+ + S + + +
Sbjct: 3 CCPSHWSSYDRYCYKVFKQEMTWAD--AEKFCTQQHTGSHLVSFHSTEEVDFVVKMTHQS 60
Query: 1092 NVIPDWC 1098
+
Sbjct: 61 LKSTFFW 67
>d1ey1a_ a.79.1.1 (A:) Antitermination factor NusB {Escherichia coli
[TaxId: 562]}
Length = 139
Score = 27.0 bits (59), Expect = 7.0
Identities = 18/84 (21%), Positives = 29/84 (34%)
Query: 439 RETAFEVLFELDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLLQE 498
RE A + L+ L +IA + L + L LL G T L +
Sbjct: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69
Query: 499 LRTLIESPPYKDKLFIKNFKFHEF 522
L L+E +K ++ +
Sbjct: 70 LSRLLEELGQVEKAVLRIALYELS 93
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.139 0.423
Gapped
Lambda K H
0.267 0.0520 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,235,835
Number of extensions: 208072
Number of successful extensions: 474
Number of sequences better than 10.0: 1
Number of HSP's gapped: 462
Number of HSP's successfully gapped: 28
Length of query: 1107
Length of database: 2,407,596
Length adjustment: 95
Effective length of query: 1012
Effective length of database: 1,103,246
Effective search space: 1116484952
Effective search space used: 1116484952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.6 bits)