BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9136
(186 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|20129183|ref|NP_608710.1| anterior pharynx defective 1, isoform A [Drosophila melanogaster]
gi|442625559|ref|NP_001259963.1| anterior pharynx defective 1, isoform B [Drosophila melanogaster]
gi|37077998|sp|Q9VQG2.1|APH1_DROME RecName: Full=Gamma-secretase subunit Aph-1; AltName:
Full=Presenilin-stabilization factor
gi|7295913|gb|AAF51212.1| anterior pharynx defective 1, isoform A [Drosophila melanogaster]
gi|15291627|gb|AAK93082.1| LD12037p [Drosophila melanogaster]
gi|24637560|gb|AAN63815.1| presenilin stabilization factor [Drosophila melanogaster]
gi|220942752|gb|ACL83919.1| aph-1-PA [synthetic construct]
gi|220952974|gb|ACL89030.1| aph-1-PA [synthetic construct]
gi|440213230|gb|AGB92500.1| anterior pharynx defective 1, isoform B [Drosophila melanogaster]
Length = 238
Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 112/231 (48%), Gaps = 58/231 (25%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQD----------------------------PVKK 32
MT EF GCT AFGP A+F+ TI D P+K+
Sbjct: 1 MTLPEFFGCTFIAFGPPFALFVFTIANDPVRIIILIAAAFFWLLSLLISSLWYALIPLKE 60
Query: 33 --------------------------SRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISA 65
+ GL V+ D DN + +AYVSGLG+G IS
Sbjct: 61 FLAFGVVFSVCFQEAFRYIIYRILRSTEQGLHAVAEDTRVTDNKHILAYVSGLGFGIISG 120
Query: 66 AFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLV 125
F+L+NVL +SGPGTMGLKG ++ F T++ LLH FWS++FF + N +
Sbjct: 121 MFALVNVLADMSGPGTMGLKGGTELFFVTSAAQALSIILLHTFWSVIFFNAFDTNNYIHI 180
Query: 126 ASVVLSHIFISSYTWYMNSSGLFSVLFII--VFTLFTAMFAYKVIGGSKKT 174
VV SH+F+S T +N++ L++ +I + T+ T + A++V GG+ ++
Sbjct: 181 GYVVFSHLFVSLIT-LLNANELYTTTLLINYLVTILTGVLAFRVAGGTSRS 230
>gi|58391850|ref|XP_318923.2| AGAP009816-PA [Anopheles gambiae str. PEST]
gi|55236032|gb|EAA14158.3| AGAP009816-PA [Anopheles gambiae str. PEST]
Length = 239
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 109/229 (47%), Gaps = 59/229 (25%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQD-----------------------------PV- 30
MT +EF GC+ AFGP +AMF TI D PV
Sbjct: 1 MTVVEFFGCSFLAFGPPVAMFALTIAHDPIRIIILIAASFFWLVSLLLSSTVWLAFHPVT 60
Query: 31 -------------------------KKSRGGLQYVSD-RNTMDNTYAMAYVSGLGYGTIS 64
+K+ GLQ V+D D + ++Y SGLG+G IS
Sbjct: 61 SKVTFGLICSVFIQEGFRYLMYKVLRKTESGLQEVTDIVRIADYRHILSYASGLGFGIIS 120
Query: 65 AAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTL 124
AFSL+N+L GP T+GLK S F ++ + LLH FWS++FF ++KN
Sbjct: 121 GAFSLVNILADSVGPATVGLKAASDIFMLISAAQSLAMILLHTFWSVIFFNACDVKNYYH 180
Query: 125 VASVVLSHIFISSYTWYMNSSGLFSVLFIIVFTL--FTAMFAYKVIGGS 171
+ VV SH+F+S T +N+SGL++V +I +T+ T A++V GG+
Sbjct: 181 IGYVVASHLFVSCMT-LLNASGLYAVTLLISYTMVCITGAIAFQVAGGT 228
>gi|195342073|ref|XP_002037626.1| GM18364 [Drosophila sechellia]
gi|194132476|gb|EDW54044.1| GM18364 [Drosophila sechellia]
Length = 238
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 113/231 (48%), Gaps = 58/231 (25%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQD----------------------------PVKK 32
MT EF GCT AFGP A+F+ TI D P+K+
Sbjct: 1 MTLPEFFGCTFIAFGPPFALFVFTIANDPVRIIILIAAAFFWLLSLLISSLWYALIPLKE 60
Query: 33 --------------------------SRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISA 65
+ GL V+ D DN + +AYVSGLG+G IS
Sbjct: 61 FLAFGVVFSVCFQEAFRYIIYRILRSTEQGLHAVAEDTRVTDNKHILAYVSGLGFGIISG 120
Query: 66 AFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLV 125
F+L+NVL +SGPGTMGLKG ++ F T++ LLH FWS++FF ++ N +
Sbjct: 121 MFALVNVLADMSGPGTMGLKGGTELFFVTSAAQALSIILLHTFWSVIFFNALDTNNYIHI 180
Query: 126 ASVVLSHIFISSYTWYMNSSGLFSVLFII--VFTLFTAMFAYKVIGGSKKT 174
VV SH+F+S T +N++ L++ +I + T+ T + A++V GG+ ++
Sbjct: 181 GYVVGSHLFVSLIT-LLNANELYTTTLLINYLVTILTGVLAFRVAGGTSRS 230
>gi|91083047|ref|XP_966461.1| PREDICTED: similar to anterior pharynx defective 1 CG2855-PA
[Tribolium castaneum]
gi|270007655|gb|EFA04103.1| hypothetical protein TcasGA2_TC014338 [Tribolium castaneum]
Length = 240
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 98/166 (59%), Gaps = 7/166 (4%)
Query: 13 AFGPVIAMFLTT----IMQDPVKKSRGGLQYVSDRNT--MDNTYAMAYVSGLGYGTISAA 66
AFG V ++F I+ ++K+ GL+ ++D +T ++N + +AYVSGLG+G IS A
Sbjct: 64 AFGVVFSVFFQETFRYIIYKILRKAENGLKKITDDSTQLIENKHILAYVSGLGFGIISGA 123
Query: 67 FSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVA 126
FSL+N+L GPGTMGLKG ++ F T++ CF+LLH FW ++FF ++ N+ V
Sbjct: 124 FSLVNILADAVGPGTMGLKGGNEMFFLTSAATGLCFTLLHTFWGVIFFNALDNSNKCYVG 183
Query: 127 SVVLSHIFISSYTWYMNSSGLFSVLFIIVFTL-FTAMFAYKVIGGS 171
VV+SH+ S T G L + F L + AY+V GGS
Sbjct: 184 VVVVSHLLSSCITLLNFKVGPAGTLIPLYFNLVLMGLMAYRVAGGS 229
Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK 31
MT +EF GCT AFGP AMF+ TI DPV+
Sbjct: 1 MTLVEFFGCTFLAFGPPFAMFVFTIAHDPVR 31
>gi|195576137|ref|XP_002077933.1| GD23180 [Drosophila simulans]
gi|194189942|gb|EDX03518.1| GD23180 [Drosophila simulans]
Length = 238
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 112/231 (48%), Gaps = 58/231 (25%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQD----------------------------PVKK 32
MT EF GCT AFGP A+F+ TI D P+K+
Sbjct: 1 MTLPEFFGCTFIAFGPPFALFVFTIANDPVRIIILIAAAFFWLLSLLISSLWYALIPLKE 60
Query: 33 --------------------------SRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISA 65
+ GL V+ D DN + +AYVSGLG+G IS
Sbjct: 61 FLAFGVVFSVCFQEAFRYIIYRILRSTEQGLHAVAEDTRVTDNKHILAYVSGLGFGIISG 120
Query: 66 AFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLV 125
F+L+NVL +SGPGTMGLKG ++ F T++ LLH FWS++FF + N +
Sbjct: 121 MFALVNVLADMSGPGTMGLKGGTELFFVTSAAQALSIILLHTFWSVIFFNAFDTNNYIHI 180
Query: 126 ASVVLSHIFISSYTWYMNSSGLFSVLFII--VFTLFTAMFAYKVIGGSKKT 174
VV SH+F+S T +N++ L++ +I + T+ T + A++V GG+ ++
Sbjct: 181 GYVVGSHLFVSLIT-LLNANELYTTTLLINYLVTILTGVLAFRVAGGTSRS 230
>gi|195470857|ref|XP_002087723.1| GE18179 [Drosophila yakuba]
gi|194173824|gb|EDW87435.1| GE18179 [Drosophila yakuba]
Length = 238
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 112/231 (48%), Gaps = 58/231 (25%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQD----------------------------PVKK 32
MT EF GCT AFGP A+F+ TI D P+K+
Sbjct: 1 MTLPEFFGCTFIAFGPPFALFVFTIANDPVRIIILIAAAFFWLLSLLISSLWYALIPLKE 60
Query: 33 --------------------------SRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISA 65
+ GL V+ D DN + +AYVSGLG+G IS
Sbjct: 61 FLAFGVVFSVCFQEGFRYIIYRILRSTEQGLHAVAEDTRVTDNKHILAYVSGLGFGIISG 120
Query: 66 AFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLV 125
F+L+NVL +SGPGTMGLKG ++ F T++ LLH FWS++FF + N +
Sbjct: 121 MFALVNVLADMSGPGTMGLKGGTELFFVTSAAQALSIILLHTFWSVIFFNAFDTNNYIHI 180
Query: 126 ASVVLSHIFISSYTWYMNSSGLFSVLFII--VFTLFTAMFAYKVIGGSKKT 174
VV SH+F+S T +N++ L++ +I + T+ T + A++V GG+ ++
Sbjct: 181 GYVVGSHLFVSLIT-LLNANELYTTTLLINYLVTILTGVLAFRVAGGTSRS 230
>gi|194855000|ref|XP_001968460.1| GG24882 [Drosophila erecta]
gi|190660327|gb|EDV57519.1| GG24882 [Drosophila erecta]
Length = 238
Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 112/231 (48%), Gaps = 58/231 (25%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQD----------------------------PVKK 32
MT EF GCT AFGP A+F+ TI D P+K+
Sbjct: 1 MTLPEFFGCTFIAFGPPFALFVFTIANDPVRIIILIAAAFFWLLSLLISSLWYALIPLKE 60
Query: 33 --------------------------SRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISA 65
+ GL V+ D DN + +AYVSGLG+G IS
Sbjct: 61 FLAFGVVFSVCFQEGFRYIIYRILRSTEQGLHAVAEDTRVTDNKHILAYVSGLGFGIISG 120
Query: 66 AFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLV 125
F+L+NVL +SGPGTMGLKG ++ F T++ LLH FWS++FF + N +
Sbjct: 121 MFALVNVLADMSGPGTMGLKGGTELFFVTSAAQALSIILLHTFWSVIFFNAFDTNNYIHI 180
Query: 126 ASVVLSHIFISSYTWYMNSSGLFSVLFII--VFTLFTAMFAYKVIGGSKKT 174
VV SH+F+S T +N++ L++ +I + T+ T + A+++ GG+ ++
Sbjct: 181 GYVVGSHLFVSLIT-LLNANELYTTTLLINYLVTILTGVLAFRLAGGTSRS 230
>gi|344313184|ref|NP_001230700.1| gamma-secretase subunit APH-1A isoform 3 [Homo sapiens]
gi|194374033|dbj|BAG62329.1| unnamed protein product [Homo sapiens]
Length = 190
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 98/178 (55%), Gaps = 9/178 (5%)
Query: 6 FLGCTMTAFGPVIAMFLTTIMQDPVK-------KSRGGLQYVS-DRNTMDNTYAMAYVSG 57
F GCT AFGP A+FL T+ DP++ K+ GL +S D + + MAYVSG
Sbjct: 6 FFGCTFVAFGPAFALFLITVAGDPLRVIILVAGKADEGLASLSEDGRSPISIRQMAYVSG 65
Query: 58 LGYGTISAAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGV 117
L +G IS FS++N+L GPG +G+ G+S Y+ T++ T LLH FW +VFF
Sbjct: 66 LSFGIISGVFSVINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFDAC 125
Query: 118 EIKNRTLVASVVLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTM 175
E + + VV SH+ S T ++N S+L I T+ ++A+ GGS +++
Sbjct: 126 ERRRYWALGLVVGSHLLTSGLT-FLNPWYEASLLPIYAVTVSMGLWAFITAGGSLRSI 182
>gi|321460307|gb|EFX71350.1| hypothetical protein DAPPUDRAFT_308872 [Daphnia pulex]
Length = 250
Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 98/205 (47%), Gaps = 58/205 (28%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTI---------------------------------MQ 27
M +EF GC AFGP +AMFL TI +
Sbjct: 1 MALLEFFGCAFLAFGPPLAMFLLTIAKDPIRIIILIASAFFWLLSLLTSSLLWLVAVTLH 60
Query: 28 DPV----------------------KKSRGGLQYVSDRNT--MDNTYAMAYVSGLGYGTI 63
P+ +K+ GL+ +++ +T + N +AYVSGLG+G I
Sbjct: 61 SPIVVGVIFSVLFQELFRYLIYLLLRKAEVGLKKLTESDTAIITNKNILAYVSGLGFGII 120
Query: 64 SAAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRT 123
S FSL+NVL +GPGT+GL G+S F T+++ T CF LLH W ++FF ++ K
Sbjct: 121 SGTFSLVNVLADATGPGTVGLHGDSNLFFLTSALLTLCFILLHTAWGVLFFHALDKKKYL 180
Query: 124 LVASVVLSHIFISSYTWYMNSSGLF 148
+ VV+SH+ +S T MNSS L+
Sbjct: 181 ALVWVVMSHLLVSLLT-LMNSSQLY 204
>gi|242014226|ref|XP_002427792.1| gamma-secretase subunit Aph-1, putative [Pediculus humanus
corporis]
gi|212512261|gb|EEB15054.1| gamma-secretase subunit Aph-1, putative [Pediculus humanus
corporis]
Length = 227
Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 91/147 (61%), Gaps = 3/147 (2%)
Query: 30 VKKSRGGLQYVSDRNT--MDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGE 87
++ + GGL+ ++D T ++N + +AYV+GLG+G +S F+L+NVL GP TMGL
Sbjct: 76 IRSAEGGLKKITDNETQIIENKHILAYVAGLGFGIMSGLFALINVLADSLGPATMGLHQG 135
Query: 88 SQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSG- 146
S+ F T++ T CF LLH FW ++FF + KN + V+L+H+ +S+ T++
Sbjct: 136 SEKFFMTSAATTLCFILLHTFWGVIFFSAADSKNYINITWVLLTHLIVSALTFFNQKEWY 195
Query: 147 LFSVLFIIVFTLFTAMFAYKVIGGSKK 173
L S+L + +FT + A+KV GGS +
Sbjct: 196 LASLLPAYIIMIFTGLLAFKVAGGSLR 222
>gi|195437344|ref|XP_002066600.1| GK24580 [Drosophila willistoni]
gi|194162685|gb|EDW77586.1| GK24580 [Drosophila willistoni]
Length = 239
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 94/153 (61%), Gaps = 4/153 (2%)
Query: 25 IMQDPVKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMG 83
I+ ++ + GL V+ D DN + +AYVSGLG+G IS F+L+NVL +SGPGTMG
Sbjct: 80 IIYRILRSTEQGLHAVAEDTRVTDNKHILAYVSGLGFGIISGMFALVNVLADMSGPGTMG 139
Query: 84 LKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMN 143
LKG S++F T++ LLH FWS++FF + N + VV SH+F+S T +N
Sbjct: 140 LKGGSEFFFITSAAQALSIILLHTFWSVIFFNAFDTNNYLHIGYVVGSHLFVSLLT-LLN 198
Query: 144 SSGLF--SVLFIIVFTLFTAMFAYKVIGGSKKT 174
+ L+ ++L + T+ T + A+KV GG+ ++
Sbjct: 199 AEALYIATLLPNYIVTVLTGVLAFKVAGGTSRS 231
>gi|195052487|ref|XP_001993308.1| GH13737 [Drosophila grimshawi]
gi|193900367|gb|EDV99233.1| GH13737 [Drosophila grimshawi]
Length = 239
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 95/154 (61%), Gaps = 4/154 (2%)
Query: 25 IMQDPVKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMG 83
I+ ++ + GL V+ D +N + +AYVSGLG+G ISA F+L+NVL +SGPGTMG
Sbjct: 80 IIYRILRSTEQGLHAVAEDTRVTENKHILAYVSGLGFGIISAMFALVNVLADMSGPGTMG 139
Query: 84 LKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMN 143
LKG S++F T++ LLH FWSI+FF + N + VV +H+F+S T +N
Sbjct: 140 LKGGSEFFFITSAAQALSIVLLHTFWSIIFFNAFDTNNYVHIGYVVGTHLFVSLLT-LLN 198
Query: 144 SSGLF--SVLFIIVFTLFTAMFAYKVIGGSKKTM 175
+ G + ++L + T+ T A+KV GG+ +++
Sbjct: 199 ADGYYWATLLPNYIVTVLTGAIAFKVAGGTGRSI 232
Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK 31
MT EF GCT AFGP A+F+ +I DPV+
Sbjct: 1 MTLPEFFGCTFIAFGPPFALFVFSIANDPVR 31
>gi|260825428|ref|XP_002607668.1| hypothetical protein BRAFLDRAFT_123275 [Branchiostoma floridae]
gi|229293017|gb|EEN63678.1| hypothetical protein BRAFLDRAFT_123275 [Branchiostoma floridae]
Length = 244
Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 97/168 (57%), Gaps = 6/168 (3%)
Query: 13 AFGPVIAMFLTTIMQ----DPVKKSRGGLQYVSDRN-TMDNTYAMAYVSGLGYGTISAAF 67
AFG V ++ I + ++K+ GLQ SD T + + +AYV+GLG+G +S AF
Sbjct: 64 AFGVVFSVLFQEIFRFFIYKLLRKADEGLQTFSDEPPTASDKHTIAYVAGLGFGLMSGAF 123
Query: 68 SLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVAS 127
SL+NVL +GPGT+G+ G++ YF T+++ T CF LLH FW+++FF G + +N V
Sbjct: 124 SLVNVLAMATGPGTVGIHGDTPYFFLTSALMTSCFILLHTFWNVIFFWGCDKRNFPAVGF 183
Query: 128 VVLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTM 175
VV H+ IS T + +++ L T AYK++GGS +
Sbjct: 184 VVGFHMLISCLT-LIRPLQPATIIPAYCILLVTMAIAYKLVGGSVNNL 230
Score = 38.9 bits (89), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK 31
MT EF GCT A+GP A+F+ TI ++P++
Sbjct: 1 MTVKEFFGCTFIAYGPAFALFIFTIAREPLR 31
>gi|170029264|ref|XP_001842513.1| gamma-secretase subunit Aph-1 [Culex quinquefasciatus]
gi|167881616|gb|EDS44999.1| gamma-secretase subunit Aph-1 [Culex quinquefasciatus]
Length = 239
Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 109/229 (47%), Gaps = 59/229 (25%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVKK---------------------------- 32
MT +EF GC+ AFGP +AMF TI DP++
Sbjct: 1 MTVVEFFGCSFLAFGPPVAMFALTIAHDPIRIIILIAASFFWLVSLLLSSTVWFAVFPLR 60
Query: 33 ------------SRGGLQYV-------SDRNTMDNT---------YAMAYVSGLGYGTIS 64
+ G +Y+ ++R + T + ++YVSGLG+G IS
Sbjct: 61 DKLVFGLICSVFIQEGFRYLMYKLLRKTERGLQEVTEIARISDYKHILSYVSGLGFGIIS 120
Query: 65 AAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTL 124
AFSL+N+L GP T+GLK S F ++ + C LLH FWS++FF ++KN
Sbjct: 121 GAFSLVNILADSVGPATVGLKAGSSVFILISAAQSLCMILLHTFWSVIFFSACDVKNYYH 180
Query: 125 VASVVLSHIFISSYTWYMNSSGLFSVLFII--VFTLFTAMFAYKVIGGS 171
+ VV SH+F+S T +N LF+V + L T++ +++V+GG+
Sbjct: 181 IGYVVTSHLFVSCMT-LLNGQELFAVSLTASYIVMLVTSVISFRVVGGN 228
>gi|125984472|ref|XP_001356000.1| GA15487 [Drosophila pseudoobscura pseudoobscura]
gi|54644318|gb|EAL33059.1| GA15487 [Drosophila pseudoobscura pseudoobscura]
Length = 239
Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 94/153 (61%), Gaps = 4/153 (2%)
Query: 25 IMQDPVKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMG 83
I+ ++ + GLQ V+ D DN + ++YVSGLG+G IS F+L+NVL +SGPGTMG
Sbjct: 80 IIYRILRSTEQGLQAVAEDTRVTDNKHILSYVSGLGFGIISGMFALVNVLADMSGPGTMG 139
Query: 84 LKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMN 143
L+ ++ F T++ LLH FWS++FF + N +A VV SH+F+S T +N
Sbjct: 140 LQSGTELFFVTSAAQALSIILLHTFWSVIFFNACDTNNYLHIAYVVGSHLFVSLLT-LLN 198
Query: 144 SSGLFSVLFII--VFTLFTAMFAYKVIGGSKKT 174
+S L++ + + T+ T + A++V GG+ ++
Sbjct: 199 ASELYTATLLTNYIITILTGLLAFRVAGGTSRS 231
Score = 42.4 bits (98), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK 31
MT EF GCT AFGP A+F+ TI DPV+
Sbjct: 1 MTLPEFFGCTFIAFGPPFALFVFTIANDPVR 31
>gi|195161420|ref|XP_002021566.1| GL26582 [Drosophila persimilis]
gi|194103366|gb|EDW25409.1| GL26582 [Drosophila persimilis]
Length = 239
Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 94/153 (61%), Gaps = 4/153 (2%)
Query: 25 IMQDPVKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMG 83
I+ ++ + GLQ V+ D DN + ++YVSGLG+G IS F+L+NVL +SGPGTMG
Sbjct: 80 IIYRILRSTEQGLQAVAEDTRVTDNKHILSYVSGLGFGIISGMFALVNVLADMSGPGTMG 139
Query: 84 LKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMN 143
L+ ++ F T++ LLH FWS++FF + N +A VV SH+F+S T +N
Sbjct: 140 LQSGTELFFVTSAAQALSIILLHTFWSVIFFNACDTNNYLHIAYVVGSHLFVSLLT-LLN 198
Query: 144 SSGLFSVLFII--VFTLFTAMFAYKVIGGSKKT 174
+S L++ + + T+ T + A++V GG+ ++
Sbjct: 199 ASELYTATLLTNYIITILTGLLAFRVAGGTSRS 231
Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK 31
MT EF GCT AFGP A+F+ TI DP++
Sbjct: 1 MTLPEFFGCTFIAFGPPFALFVFTIANDPLR 31
>gi|156379917|ref|XP_001631702.1| predicted protein [Nematostella vectensis]
gi|156218746|gb|EDO39639.1| predicted protein [Nematostella vectensis]
Length = 243
Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 103/227 (45%), Gaps = 56/227 (24%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQD-----------------------------PVK 31
MT M F GCT AFGP +AMF TI D P+K
Sbjct: 1 MTLMVFFGCTFIAFGPALAMFSLTIAGDAQQVIVLIASAFFWLLSLLISSIWWMVVSPLK 60
Query: 32 --------------------------KSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISA 65
K+ GL + + + + +AYV+GLGYG +S
Sbjct: 61 DELAFGMTFSVLFQELFRFAYFKIIRKADEGLLSMINNQSPLRKHRIAYVAGLGYGLMSG 120
Query: 66 AFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLV 125
F+++NVL +SGPG++GL G +Q F ++ T CF LL+ FW +++F G E K V
Sbjct: 121 LFAMVNVLADISGPGSIGLHGNAQNFLIVSAFLTSCFVLLNTFWGVIWFDGWENKKWLNV 180
Query: 126 ASVVLSHIFISSYTWYMNSSGLFSVLFIIVFTLFT-AMFAYKVIGGS 171
VV SH+F+S T S + L FTL A+ A+KV GGS
Sbjct: 181 FVVVASHLFVSLMTLLNQDSQYIATLLSAYFTLVVMAVLAFKVAGGS 227
>gi|195386856|ref|XP_002052120.1| GJ17382 [Drosophila virilis]
gi|194148577|gb|EDW64275.1| GJ17382 [Drosophila virilis]
Length = 239
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 93/153 (60%), Gaps = 4/153 (2%)
Query: 25 IMQDPVKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMG 83
I+ ++ + GL V+ D +N + +AYVSGLG+G IS F+L+NVL +SGPGTMG
Sbjct: 80 IIYRILRSTEQGLHAVAEDTRITENKHILAYVSGLGFGIISGMFALVNVLADMSGPGTMG 139
Query: 84 LKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMN 143
LKG + F T++ LLH FWSI+FF + N + VV++H+F+S T +N
Sbjct: 140 LKGGTDLFFMTSAAQALSIILLHTFWSIIFFNAFDTNNYLHIGYVVVTHLFVSLLT-LLN 198
Query: 144 SSGLF--SVLFIIVFTLFTAMFAYKVIGGSKKT 174
+ L+ ++L + T+ T + A+KV GGS ++
Sbjct: 199 ADALYWATLLPNYIVTILTGVLAFKVAGGSGRS 231
Score = 38.9 bits (89), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK 31
MT E GCT AFGP A+F+ +I DPV+
Sbjct: 1 MTLPELFGCTFIAFGPPFALFVFSIANDPVR 31
>gi|56204871|emb|CAI22813.1| anterior pharynx defective 1 homolog A (C. elegans) [Homo sapiens]
Length = 150
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 80/143 (55%), Gaps = 8/143 (5%)
Query: 6 FLGCTMTAFGPVIAMFLTTIMQDPVK-------KSRGGLQYVS-DRNTMDNTYAMAYVSG 57
F GCT AFGP A+FL T+ DP++ K+ GL +S D + + MAYVSG
Sbjct: 6 FFGCTFVAFGPAFALFLITVAGDPLRVIILVAGKADEGLASLSEDGRSPISIRQMAYVSG 65
Query: 58 LGYGTISAAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGV 117
L +G IS FS++N+L GPG +G+ G+S Y+ T++ T LLH FW +VFF
Sbjct: 66 LSFGIISGVFSVINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFDAC 125
Query: 118 EIKNRTLVASVVLSHIFISSYTW 140
E + + VV SH+ S T+
Sbjct: 126 ERRRYWALGLVVGSHLLTSGLTF 148
>gi|332376238|gb|AEE63259.1| unknown [Dendroctonus ponderosae]
Length = 240
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 95/155 (61%), Gaps = 5/155 (3%)
Query: 25 IMQDPVKKSRGGLQYVSDRNT--MDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTM 82
I+ ++K+ GL +++ + +DN + +AYVSGLG+G IS AFSL+NVL GP TM
Sbjct: 80 IIYRILRKAENGLMKITEDSARLIDNKHILAYVSGLGFGIISGAFSLINVLADAVGPATM 139
Query: 83 GLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYM 142
GLK ++ F +++ F LLH FWS++FF G + NR V V+++H+ S T +
Sbjct: 140 GLKAGNEMFFLSSAATALSFILLHTFWSVLFFNGFDNNNRIQVGYVIVAHLLASGLTMF- 198
Query: 143 NSSGLFSVLFIIVFTLF--TAMFAYKVIGGSKKTM 175
N +++ I ++ L +A++A++V GGS ++
Sbjct: 199 NRYQIYTATLIPLYLLLSVSAVYAFRVAGGSFDSL 233
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK 31
MT EF GC AFGP +AMFL TI+QDPV+
Sbjct: 1 MTVREFFGCAFLAFGPPVAMFLFTIVQDPVR 31
>gi|195117680|ref|XP_002003375.1| GI17881 [Drosophila mojavensis]
gi|193913950|gb|EDW12817.1| GI17881 [Drosophila mojavensis]
Length = 239
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 100/169 (59%), Gaps = 8/169 (4%)
Query: 13 AFGPVIAMFLTT----IMQDPVKKSRGGLQYVSDRNTM-DNTYAMAYVSGLGYGTISAAF 67
AFG V ++ I+ ++ + L V++ M +N + +AYVSGLG+G IS F
Sbjct: 64 AFGVVFSVLFQECFRYIIYRILRSTEHALHAVAEDTRMTENKHILAYVSGLGFGIISGLF 123
Query: 68 SLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVAS 127
+L+NVL ++GPGTMGLKG S+ F T+++ LLH FWS++FF + N +
Sbjct: 124 ALVNVLADMTGPGTMGLKGGSEMFFVTSAVQVLSIVLLHTFWSVIFFNAFDTNNYLHIFY 183
Query: 128 VVLSHIFISSYTWYMNSSGLF--SVLFIIVFTLFTAMFAYKVIGGSKKT 174
VV SH+F+S T +N+ GL+ S++ V T+ T + A+KV GG+ +
Sbjct: 184 VVGSHLFVSLLT-LLNADGLYWASLVPNYVVTILTGVLAFKVAGGTSNS 231
>gi|289743165|gb|ADD20330.1| gamma-secretase subunit Aph-1 [Glossina morsitans morsitans]
Length = 239
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 109/233 (46%), Gaps = 59/233 (25%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVKKS--------------------------- 33
MT EF GC+M AFGP +A+F TI DP++
Sbjct: 1 MTMPEFFGCSMIAFGPPLALFTFTIANDPIRIIILIVAAFFWLVSLLASSIVWYAIVPLR 60
Query: 34 -------------RGGLQYVSDR----------------NTMDNTYAMAYVSGLGYGTIS 64
+ G +Y+ R ++N + +AYVSG G+G IS
Sbjct: 61 KFLAFGVVFSVLFQEGFRYIIYRILRRTEQGLQVVAEDTRVIENKHILAYVSGFGFGIIS 120
Query: 65 AAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTL 124
A F+L+NVL + GP T+GLKG S+ F +S LLH FWS++F+ + N
Sbjct: 121 AMFALVNVLADMWGPATLGLKGGSEVFFLVSSAQALSICLLHTFWSVIFYNAFDTNNYMH 180
Query: 125 VASVVLSHIFISSYTWYMNSSGLFSVLFII--VFTLFTAMFAYKVIGGSKKTM 175
+ V+ +H+ +S T +N+ L++ +I T+ TA+ A+ V GG+K+++
Sbjct: 181 IVYVITTHMVVSLIT-LLNAYELYTASLMINYCLTVTTAILAFHVSGGTKRSL 232
>gi|194770521|ref|XP_001967341.1| GF13892 [Drosophila ananassae]
gi|190618103|gb|EDV33627.1| GF13892 [Drosophila ananassae]
Length = 239
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 91/152 (59%), Gaps = 4/152 (2%)
Query: 25 IMQDPVKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMG 83
I+ ++ + GL V+ D DN + +AYVSGLG+G IS F+L+NVL +SGPGTMG
Sbjct: 80 IIYRILRSTEQGLHAVAEDTRVTDNKHILAYVSGLGFGIISGMFALVNVLADMSGPGTMG 139
Query: 84 LKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMN 143
LK ++ F T++ LLH FWS++FF + N + VV SH+F+S T +N
Sbjct: 140 LKSGTEIFFITSAAQALSIILLHTFWSVIFFNAFDTSNYLHICYVVGSHLFVSLLT-LLN 198
Query: 144 SSGLFSVLFII--VFTLFTAMFAYKVIGGSKK 173
+S L+ +I + T+ T + A++V GG+ +
Sbjct: 199 ASELYITTLLINYIITIITGVLAFRVAGGTSR 230
>gi|149028913|gb|EDL84254.1| rCG56634, isoform CRA_b [Rattus norvegicus]
Length = 145
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 75/129 (58%), Gaps = 8/129 (6%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK-------KSRGGLQYVSDRNTMDNTYAMA 53
MT F GC AFGP +A++L TI DP++ K+ GL+ ++ T + +A
Sbjct: 1 MTAPVFFGCAFIAFGPALALYLFTIATDPLRVIFLIAGKASEGLKSINPEETAPSMRLLA 60
Query: 54 YVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVF 113
YVSGLG+G +S FS +N L GPGT+G+ G+S F ++ T +LHVFW IVF
Sbjct: 61 YVSGLGFGIMSGVFSFVNTLSNALGPGTVGIHGDSPQFFLNSAFMTLVIIMLHVFWGIVF 120
Query: 114 FRGVEIKNR 122
F G E KN+
Sbjct: 121 FDGCE-KNK 128
>gi|432092262|gb|ELK24886.1| Gamma-secretase subunit APH-1B [Myotis davidii]
Length = 257
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 93/158 (58%), Gaps = 6/158 (3%)
Query: 30 VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
+KK+ GL+ ++ + +AYVSGLG+G +S FS +N L GPGT+G+ G+S
Sbjct: 94 LKKANDGLKTINPDEPAPSMRLLAYVSGLGFGIMSGVFSFVNTLSDSLGPGTVGIHGDSP 153
Query: 90 YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFS 149
YF ++ T LLH+FW I+FF G E KN + +V+L+H+ +S+ T ++N S
Sbjct: 154 YFFLNSAFMTQVIILLHMFWGIIFFDGCEKKNWYPLLAVILTHLLVSALT-FLNPQYEVS 212
Query: 150 VLFIIVFTLFTAMFAYKVIGGSKKT-----MCNGENLI 182
++ + T+ T + A+ V GGS+++ +C +N +
Sbjct: 213 LVSAYMITVLTGIRAFFVAGGSRRSLKRYLLCQDKNFL 250
Score = 36.2 bits (82), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK 31
MT F GC AFGP +A+++ TI DP++
Sbjct: 1 MTAAVFFGCAFIAFGPALALYIFTIATDPLR 31
>gi|157128581|ref|XP_001655139.1| gamma-secretase subunit aph-1 [Aedes aegypti]
gi|108882203|gb|EAT46428.1| AAEL002389-PA [Aedes aegypti]
Length = 239
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 98/166 (59%), Gaps = 8/166 (4%)
Query: 13 AFGPVIAMFLTT----IMQDPVKKSRGGLQYVSD-RNTMDNTYAMAYVSGLGYGTISAAF 67
AFG + ++F+ +M ++K+ GLQ V++ D + ++YV GLG+G IS AF
Sbjct: 64 AFGLICSVFIQEAFRYLMYKLLRKTERGLQEVTEIVRISDYKHILSYVCGLGFGIISGAF 123
Query: 68 SLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVAS 127
SL+N+L GP T+GLK S F ++ + C LLH FWS++FF ++KN +
Sbjct: 124 SLVNILADSVGPATVGLKAGSNIFIVISAAQSLCMILLHTFWSVIFFNACDLKNYYHIGY 183
Query: 128 VVLSHIFISSYTWYMNSSGLFSVLFII--VFTLFTAMFAYKVIGGS 171
VV+SH+F+S T +N LF+V + L T++ A++V+GG+
Sbjct: 184 VVVSHLFVSCIT-LLNGQELFAVSLTASYIVMLVTSVIAFRVVGGN 228
Score = 43.1 bits (100), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK 31
MT +EF GC+ AFGP +AMF TI DP++
Sbjct: 1 MTVVEFFGCSFLAFGPPLAMFSLTIAHDPIR 31
>gi|332022370|gb|EGI62682.1| Gamma-secretase subunit Aph-1 [Acromyrmex echinatior]
Length = 238
Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 92/157 (58%), Gaps = 9/157 (5%)
Query: 30 VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
++K+ GL+ V+ + D+ + AYV GLG+G +S AF+L+NVL GPGTMGL+ S+
Sbjct: 85 LRKAERGLEKVTTTHVADSRHVFAYVCGLGFGFMSGAFALVNVLADAVGPGTMGLRQGSE 144
Query: 90 YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYT----WYMNSS 145
YF ++ T CF LLH FW ++FF ++ KN + VV SH+ +S T + + ++
Sbjct: 145 YFFIISAATTLCFILLHTFWGVIFFYALDKKNWGQIIWVVGSHLVVSCMTLLNRYQVYAA 204
Query: 146 GLFSVLFIIVFTLFTAMFAYKVIGGSKKT--MCNGEN 180
L S ++V T A++++GG ++ +C N
Sbjct: 205 SLLSAYIVLV---ITTTLAFRIVGGRTQSLILCFQRN 238
Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK 31
MT M+F GC AFGP +AMF+ TI +P++
Sbjct: 1 MTVMDFFGCACLAFGPPLAMFMFTIAAEPIR 31
>gi|328779809|ref|XP_392345.3| PREDICTED: gamma-secretase subunit Aph-1 [Apis mellifera]
Length = 238
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 86/149 (57%), Gaps = 1/149 (0%)
Query: 30 VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
++K+ GL V+ + D+ + AYV GLG+G +S F+L+NVL GPGTMGL+ ++
Sbjct: 85 LRKAERGLDKVTTTHVADSRHVFAYVCGLGFGFMSGVFALVNVLADAVGPGTMGLRQGTE 144
Query: 90 YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWY-MNSSGLF 148
YF ++ T CF LLH FW +VFF ++ KN V VV SH+F+S T + + +
Sbjct: 145 YFFVISAATTLCFILLHTFWGVVFFSALDRKNWGQVIWVVGSHLFVSCMTLLNVKEAYVA 204
Query: 149 SVLFIIVFTLFTAMFAYKVIGGSKKTMCN 177
+ L V + T A+KV GG +++
Sbjct: 205 TTLSAYVILMITTALAFKVAGGRPQSIVQ 233
Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK 31
MT M+F GC AFGP +AMF T+ +P++
Sbjct: 1 MTVMDFFGCAFLAFGPPLAMFTFTVAAEPIR 31
>gi|380011221|ref|XP_003689709.1| PREDICTED: gamma-secretase subunit Aph-1-like [Apis florea]
Length = 238
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 86/149 (57%), Gaps = 1/149 (0%)
Query: 30 VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
++K+ GL V+ + D+ + AYV GLG+G +S F+L+NVL GPGTMGL+ ++
Sbjct: 85 LRKAERGLDKVTTTHVADSRHVFAYVCGLGFGFMSGVFALVNVLADAVGPGTMGLRQGTE 144
Query: 90 YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWY-MNSSGLF 148
YF ++ T CF LLH FW +VFF ++ KN V VV SH+F+S T + + +
Sbjct: 145 YFFVISAATTLCFILLHTFWGVVFFSALDRKNWGQVIWVVGSHLFVSCMTLLNVKEAYVA 204
Query: 149 SVLFIIVFTLFTAMFAYKVIGGSKKTMCN 177
+ L V + T A+KV GG +++
Sbjct: 205 TTLSAYVILMITTALAFKVAGGRPQSIVQ 233
Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK 31
MT M+F GC AFGP +AMF T+ +P++
Sbjct: 1 MTVMDFFGCAFLAFGPPLAMFTFTVAAEPIR 31
>gi|395502619|ref|XP_003755676.1| PREDICTED: gamma-secretase subunit Aph-1b isoform 3 [Sarcophilus
harrisii]
Length = 201
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 73/129 (56%), Gaps = 8/129 (6%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK-------KSRGGLQYVSDRNTMD-NTYAM 52
MT F GCT AFGP +A+++ TI DP++ K+ GL +S T + +
Sbjct: 1 MTAAVFFGCTCIAFGPALALYVFTIASDPLRIIFLIAGKANKGLMTISQEETSPISIRQL 60
Query: 53 AYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIV 112
AYVSGLG+G +S FSL+N+L GPG +G+ G+ F ++ T LLHVFW +V
Sbjct: 61 AYVSGLGFGIMSGVFSLVNILSDSLGPGIVGIHGDPPQFFLASAFMTLVMVLLHVFWGVV 120
Query: 113 FFRGVEIKN 121
FF E KN
Sbjct: 121 FFDACETKN 129
>gi|403302767|ref|XP_003942024.1| PREDICTED: gamma-secretase subunit APH-1A isoform 2 [Saimiri
boliviensis boliviensis]
Length = 276
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 93/170 (54%), Gaps = 6/170 (3%)
Query: 6 FLGCTMTAFGPVIAMFLTTIMQDPVKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISA 65
F GCT AFGP A+FL T+ DP++ + V+ R + T + +SGL +G IS
Sbjct: 87 FFGCTFVAFGPAFALFLITVAGDPLRV----IILVAGRCSALPTTS-CLISGLSFGIISG 141
Query: 66 AFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLV 125
FS++N+L GPG +G+ G+S Y+ T++ T LLH FW +VFF E + +
Sbjct: 142 VFSVINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFDACERRRYWAL 201
Query: 126 ASVVLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTM 175
VV SH+ S T ++N S+L I T+ ++A+ GGS +++
Sbjct: 202 GLVVGSHLLTSGLT-FLNPWYEASLLPIYAVTVSMGLWAFITAGGSLRSI 250
>gi|426216486|ref|XP_004002493.1| PREDICTED: gamma-secretase subunit APH-1A isoform 2 [Ovis aries]
Length = 195
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 93/170 (54%), Gaps = 6/170 (3%)
Query: 6 FLGCTMTAFGPVIAMFLTTIMQDPVKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISA 65
F GCT AFGP A+FL T+ DP++ + V+ R + T + +SGL +G IS
Sbjct: 6 FFGCTFVAFGPAFALFLITVAGDPLRV----IILVAGRCSALPTTS-CLISGLSFGIISG 60
Query: 66 AFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLV 125
FS++N+L GPG +G+ G+S Y+ T++ T LLH FW +VFF E + +
Sbjct: 61 VFSVINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFDACERRRYWAL 120
Query: 126 ASVVLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTM 175
VV SH+ S T ++N S+L I T+ ++A+ GGS +++
Sbjct: 121 GLVVGSHLLTSGLT-FLNPWYEASLLPIYAVTVSMGLWAFTTAGGSFRSI 169
>gi|344313186|ref|NP_001230701.1| gamma-secretase subunit APH-1A isoform 4 [Homo sapiens]
gi|194385112|dbj|BAG60962.1| unnamed protein product [Homo sapiens]
Length = 195
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 93/170 (54%), Gaps = 6/170 (3%)
Query: 6 FLGCTMTAFGPVIAMFLTTIMQDPVKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISA 65
F GCT AFGP A+FL T+ DP++ + V+ R + T + +SGL +G IS
Sbjct: 6 FFGCTFVAFGPAFALFLITVAGDPLRV----IILVAGRCSALPTTS-CLISGLSFGIISG 60
Query: 66 AFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLV 125
FS++N+L GPG +G+ G+S Y+ T++ T LLH FW +VFF E + +
Sbjct: 61 VFSVINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFDACERRRYWAL 120
Query: 126 ASVVLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTM 175
VV SH+ S T ++N S+L I T+ ++A+ GGS +++
Sbjct: 121 GLVVGSHLLTSGLT-FLNPWYEASLLPIYAVTVSMGLWAFITAGGSLRSI 169
>gi|410968240|ref|XP_003990615.1| PREDICTED: gamma-secretase subunit APH-1A isoform 2 [Felis catus]
Length = 195
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 93/170 (54%), Gaps = 6/170 (3%)
Query: 6 FLGCTMTAFGPVIAMFLTTIMQDPVKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISA 65
F GCT AFGP A+FL T+ DP++ + V+ R + T + +SGL +G IS
Sbjct: 6 FFGCTFVAFGPAFALFLITVAGDPLRV----IILVAGRCSALPTTS-CLISGLSFGIISG 60
Query: 66 AFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLV 125
FS++N+L GPG +G+ G+S Y+ T++ T LLH FW +VFF E + +
Sbjct: 61 VFSVINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFDACERRRYWAL 120
Query: 126 ASVVLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTM 175
VV SH+ S T ++N S+L I T+ ++A+ GGS +++
Sbjct: 121 GLVVGSHLLTSGLT-FLNPWYEASLLPIYAVTVSMGLWAFITAGGSLRSI 169
>gi|387018510|gb|AFJ51373.1| Gamma-secretase subunit APH-1A [Crotalus adamanteus]
Length = 254
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 87/145 (60%), Gaps = 1/145 (0%)
Query: 31 KKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQY 90
K G L D + + MAYV+GLG+G +S AF+++N+L GPG +G++G+SQ
Sbjct: 96 KAMEGLLALSEDGCSPISIQQMAYVAGLGFGLMSGAFAMINLLADSLGPGIVGIQGDSQL 155
Query: 91 FGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFSV 150
+ T++ T LLH FW I+FF G E + VA+VVL H+ +S+ T++ N L S+
Sbjct: 156 YFLTSAFMTLVLILLHTFWGIIFFHGCETRRWGEVAAVVLCHLTVSALTFW-NPVYLGSL 214
Query: 151 LFIIVFTLFTAMFAYKVIGGSKKTM 175
L + + A++AY + GGSKK +
Sbjct: 215 LPAYLLMVAMAVWAYHLSGGSKKNL 239
Score = 37.0 bits (84), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK 31
MT F GC AFGP +A+FL T++ +P++
Sbjct: 1 MTLPVFFGCAFVAFGPALALFLLTVVGEPLR 31
>gi|340713041|ref|XP_003395060.1| PREDICTED: LOW QUALITY PROTEIN: gamma-secretase subunit Aph-1-like
[Bombus terrestris]
gi|350419685|ref|XP_003492268.1| PREDICTED: gamma-secretase subunit Aph-1-like [Bombus impatiens]
Length = 238
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 87/150 (58%), Gaps = 3/150 (2%)
Query: 30 VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
++K+ GL V+ + D+ + AYV GLG+G +S F+L+NVL GPGTMGL+ ++
Sbjct: 85 LRKAERGLDKVTTTHVADSRHVFAYVCGLGFGFMSGVFALVNVLADAVGPGTMGLRQGTE 144
Query: 90 YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMN--SSGL 147
YF ++ T CF LLH FW +VFF ++ KN V VV SH+F+S T +N + +
Sbjct: 145 YFFIISAATTLCFILLHTFWGVVFFSALDRKNWGQVIWVVGSHLFVSCMT-LLNVYQAYV 203
Query: 148 FSVLFIIVFTLFTAMFAYKVIGGSKKTMCN 177
+ L V + T A+KV GG +++
Sbjct: 204 ATTLSAYVVLIITTALAFKVAGGRPQSIVQ 233
Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK 31
MT M+F GC AFGP +AMF T+ +P++
Sbjct: 1 MTVMDFFGCAFLAFGPPLAMFTFTVAAEPIR 31
>gi|359321707|ref|XP_003639674.1| PREDICTED: gamma-secretase subunit APH-1A-like isoform 2 [Canis
lupus familiaris]
Length = 195
Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 93/170 (54%), Gaps = 6/170 (3%)
Query: 6 FLGCTMTAFGPVIAMFLTTIMQDPVKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISA 65
F GCT AFGP A+FL T+ DP++ + V+ R + T + +SGL +G IS
Sbjct: 6 FFGCTFVAFGPAFALFLITVAGDPLRV----IILVAGRCSALPTTS-CLISGLSFGIISG 60
Query: 66 AFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLV 125
FS++N+L GPG +G+ G+S Y+ T++ T LLH FW +VFF E + +
Sbjct: 61 VFSVINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFDACERRRYWAL 120
Query: 126 ASVVLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTM 175
VV SH+ S T ++N S+L I T+ ++A+ GGS +++
Sbjct: 121 GLVVGSHLLTSGLT-FLNPWYEASLLPIYAVTVSMGLWAFITAGGSFRSI 169
>gi|156551235|ref|XP_001605777.1| PREDICTED: gamma-secretase subunit Aph-1-like [Nasonia vitripennis]
Length = 238
Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 91/157 (57%), Gaps = 7/157 (4%)
Query: 25 IMQDPVKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGL 84
++ ++K+ GL+ V+ + D+ AYV GLG+G +S AF+ +NVL GPGTMGL
Sbjct: 80 LLYKVLRKAEKGLEKVTTAHVADSRDIFAYVCGLGFGLMSGAFACVNVLADAMGPGTMGL 139
Query: 85 KGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYT----W 140
++YF ++ T CF LLH FW ++FF ++ KN + VV SH+F S+ T +
Sbjct: 140 HQGNEYFFMISAATTLCFILLHTFWGVIFFSALDNKNWFQITWVVGSHLFASAMTLLNGY 199
Query: 141 YMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTMCN 177
+++ LFSV I+ L T + A+ V GG + + +
Sbjct: 200 QQHAASLFSVYSIL---LITTVVAFNVAGGRVQNLLH 233
>gi|307172012|gb|EFN63606.1| Gamma-secretase subunit Aph-1 [Camponotus floridanus]
Length = 238
Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 88/149 (59%), Gaps = 7/149 (4%)
Query: 30 VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
++K+ GL+ V+ + D+ + AYV GLG+G +S AF+L+NVL GPGTMGL ++
Sbjct: 85 LRKAERGLEKVTTTHVADSRHIFAYVCGLGFGFMSGAFALVNVLADAVGPGTMGLLQGTE 144
Query: 90 YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYT----WYMNSS 145
YF ++ T CF LLH FW ++FF ++ KN + VV +H+F+S T + ++
Sbjct: 145 YFFIISAATTLCFILLHTFWGVIFFSALDKKNWGHIIWVVGTHLFVSCMTLLNRYQAYAA 204
Query: 146 GLFSVLFIIVFTLFTAMFAYKVIGGSKKT 174
L S ++V T + A+K+ GG +T
Sbjct: 205 SLLSAYIVLV---ITTVLAFKIAGGWIQT 230
Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK 31
MT M+F GC AFGP +AMF TI +P++
Sbjct: 1 MTVMDFFGCAFLAFGPPLAMFTFTIAAEPIR 31
>gi|410912369|ref|XP_003969662.1| PREDICTED: gamma-secretase subunit Aph-1b-like [Takifugu rubripes]
Length = 258
Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 90/147 (61%), Gaps = 2/147 (1%)
Query: 30 VKKSRGGLQYVSDRNTMD-NTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGES 88
+KK+ GL +S TM + +AYVSGLG+G +S AFS++N+L GPGT+G+ G+S
Sbjct: 94 LKKANEGLLTLSQEETMPISIRQLAYVSGLGFGFMSGAFSVVNILADSVGPGTVGIHGDS 153
Query: 89 QYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLF 148
QY+ +++ T LLH+FW +VFF E + VA+VV+SH+ +S T + N + +
Sbjct: 154 QYYFLSSAFMTMAIILLHMFWGVVFFDACEKQRWWAVAAVVISHLAVSCLT-FQNPAYVN 212
Query: 149 SVLFIIVFTLFTAMFAYKVIGGSKKTM 175
S++ V L ++A+ GGS + +
Sbjct: 213 SLVPTYVILLVMGIWAFYTAGGSLRNL 239
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK 31
MT F GCT AFGP I++F+ TI ++P++
Sbjct: 1 MTAAVFFGCTFIAFGPAISLFVFTIAREPLR 31
>gi|312370866|gb|EFR19176.1| hypothetical protein AND_22955 [Anopheles darlingi]
Length = 239
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 88/150 (58%), Gaps = 4/150 (2%)
Query: 25 IMQDPVKKSRGGLQYVSD-RNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMG 83
+M ++K+ GLQ V+D D + ++Y +GLG+G IS AFSL+N+L GP T+G
Sbjct: 80 LMYKVLRKTENGLQEVTDIVRIADYRHILSYATGLGFGIISGAFSLVNILADSVGPATVG 139
Query: 84 LKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMN 143
L+ S F ++ + L H FW ++FF +++KN A VV SH+F+S+ T +N
Sbjct: 140 LRAGSDVFMLVSAAQSLAMILFHTFWGVIFFHSLDVKNYKYAAYVVASHLFVSAIT-LLN 198
Query: 144 SSGLFSVLFIIVFTLF--TAMFAYKVIGGS 171
+ F+V I + + TA+ A+ V+GG+
Sbjct: 199 ALQQFAVTLTISYLILAVTAVMAFHVVGGT 228
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK 31
MT EF GC+ AFGP AMF TI DP++
Sbjct: 1 MTLAEFYGCSFLAFGPPAAMFALTIAHDPIR 31
>gi|383847605|ref|XP_003699443.1| PREDICTED: gamma-secretase subunit Aph-1-like [Megachile rotundata]
Length = 238
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 87/148 (58%), Gaps = 3/148 (2%)
Query: 30 VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
++K+ GL+ V+ + D+ + AYV GLG+G +S AF+L+NVL GPGTMGL ++
Sbjct: 85 LRKAERGLEKVTTTHVADSRHVFAYVCGLGFGFMSGAFALVNVLADAVGPGTMGLWRGTE 144
Query: 90 YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMN--SSGL 147
YF ++ T CF LLH FW +VFF ++ +N V VV SH+F+S T +N + +
Sbjct: 145 YFFIISAATTLCFILLHTFWGVVFFSALDKRNWGQVIWVVGSHLFVSCMT-LLNVYQAYV 203
Query: 148 FSVLFIIVFTLFTAMFAYKVIGGSKKTM 175
+ L + + T A+KV GG + +
Sbjct: 204 ATTLSAYMVLIITTALAFKVAGGRAQNI 231
Score = 38.9 bits (89), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK 31
MT M+F GC AFGP +AMF T+ +P++
Sbjct: 1 MTVMDFFGCAFLAFGPPLAMFTFTVAVEPIR 31
>gi|348545661|ref|XP_003460298.1| PREDICTED: gamma-secretase subunit Aph-1b-like [Oreochromis
niloticus]
Length = 258
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 101/179 (56%), Gaps = 11/179 (6%)
Query: 14 FGPVIAMFLTTIMQ----DPVKKSRGGLQYVSDRNTMD-NTYAMAYVSGLGYGTISAAFS 68
FG V+++ L + +KK+ GL +S TM + +AYVSGLG+G +S AFS
Sbjct: 74 FGVVLSVLLQETFRFAYYKLLKKANEGLLTLSQEETMPISIRQLAYVSGLGFGFMSGAFS 133
Query: 69 LLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASV 128
++N+L +GPGT+G+ G+SQ++ +++ T LLH+FW +VFF E + V +V
Sbjct: 134 VVNILADSAGPGTVGIHGDSQHYFLSSAFMTMAIILLHMFWGVVFFDACEKQRWWAVGAV 193
Query: 129 VLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTM-----CNGENLI 182
V+SH+ +S T + N + S++ V ++A+ GGS + + C ++L+
Sbjct: 194 VISHLLVSCLT-FQNPEYVASLVPTYVILFLMGVWAFYSAGGSLRNLKLCLTCKDKDLL 251
Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK 31
MT F GCT AFGP IA+FL TI ++P++
Sbjct: 1 MTAAVFFGCTFIAFGPAIALFLFTIAREPLR 31
>gi|291233423|ref|XP_002736656.1| PREDICTED: anterior pharynx defective 1-like [Saccoglossus
kowalevskii]
Length = 248
Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 106/230 (46%), Gaps = 59/230 (25%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTI---------------------------------MQ 27
MT M G T AFGP+IAMF+ TI +Q
Sbjct: 1 MTTMSLFGATFIAFGPLIAMFIFTIVKDPLKVIIMIAGSFFWLLSLLLSSLLWVIVSPLQ 60
Query: 28 DPV----------------------KKSRGGLQYVSDRN-TMDNTYAMAYVSGLGYGTIS 64
D + +K+ G+Q +D + + + YV+G+G+ +S
Sbjct: 61 DELAFAVIFSVIFQELFRLAYYKLLRKADDGMQQFTDVDQDVISKNQTGYVAGVGFALMS 120
Query: 65 AAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTL 124
+ S +N+L SGPGT+G+ G+ + F T++ FTCCF+LLH FW ++FF G++ K +
Sbjct: 121 STMSTVNILADHSGPGTVGINGDDELFLLTSAFFTCCFTLLHTFWGVIFFYGMDKKKYLM 180
Query: 125 VASVVLSHIFISSYTW---YMNSSGLFSVLFIIVFTLFTAMFAYKVIGGS 171
V VV+SH+ +S T Y + S++ V + +AY V GGS
Sbjct: 181 VLGVVVSHLAVSCLTLLNQYDPPMYMASLIPSYVIMVLMGTWAYYVAGGS 230
>gi|72005939|ref|XP_783542.1| PREDICTED: gamma-secretase subunit APH-1A-like [Strongylocentrotus
purpuratus]
gi|390343125|ref|XP_003725808.1| PREDICTED: gamma-secretase subunit APH-1A-like [Strongylocentrotus
purpuratus]
Length = 260
Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 76/134 (56%), Gaps = 3/134 (2%)
Query: 42 DRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCC 101
D + + AYV+GLG+GT+S FS +NVL GPGT+G+ G+ F T++ T C
Sbjct: 113 DSTSDKTRHGYAYVAGLGFGTMSGIFSFINVLADSKGPGTVGIHGDPHDFLITSAFLTSC 172
Query: 102 FSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTA 161
F LLH+ W+++F+ G E + V VV SH +S T +N S L+S+ + +
Sbjct: 173 FILLHIMWNVIFYWGFETRRYWAVLIVVASHFLVSELT-LLNKSQLYSITLPVAYVTLAV 231
Query: 162 M--FAYKVIGGSKK 173
M FA+ + GGS +
Sbjct: 232 MTLFAFFIAGGSSR 245
>gi|41056229|ref|NP_956409.1| gamma-secretase subunit Aph-1b [Danio rerio]
gi|37077309|sp|Q8JHE9.1|APH1B_DANRE RecName: Full=Gamma-secretase subunit Aph-1b; AltName:
Full=Anterior-pharynx-defective protein 1b
gi|22001127|gb|AAM88325.1|AF512428_1 Aph-1 protein [Danio rerio]
gi|37682171|gb|AAQ98012.1| anterior pharynx defective 1B-like [Danio rerio]
gi|47939453|gb|AAH71492.1| Anterior pharynx defective 1B [Danio rerio]
Length = 258
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 88/147 (59%), Gaps = 2/147 (1%)
Query: 30 VKKSRGGLQYVSDRNTMD-NTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGES 88
+KK+ GL +S +TM + +AYVSGLG+G +S AFS++N+L GPGT+G+ GES
Sbjct: 94 LKKANEGLLALSQEDTMPISMRQLAYVSGLGFGFMSGAFSVVNILSDSLGPGTVGIHGES 153
Query: 89 QYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLF 148
Q++ +++ T LLH+FW +VFF E + + +VV SH+ +S T ++N
Sbjct: 154 QHYFISSAFMTLAIILLHMFWGVVFFEACERQRWWALGAVVASHLVVSCLT-FVNPHYQG 212
Query: 149 SVLFIIVFTLFTAMFAYKVIGGSKKTM 175
S++ + A++AY GGS + +
Sbjct: 213 SLIPTYIILSVMAVWAYLCAGGSLRNL 239
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK 31
MT F GCT AFGP IA+F+ TI +DP++
Sbjct: 1 MTVAVFFGCTFIAFGPAIALFMFTIARDPLR 31
>gi|148229138|ref|NP_001089056.1| anterior pharynx defective 1 homolog A [Xenopus laevis]
gi|57870220|gb|AAH89044.1| LOC595044 protein [Xenopus laevis]
Length = 247
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 84/147 (57%), Gaps = 2/147 (1%)
Query: 30 VKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGES 88
+KK+ GL +S D + + MAYVSG +G IS FS++N+L GPGT+G+ G+S
Sbjct: 94 LKKADEGLATISEDGRSPISIQQMAYVSGFSFGIISGVFSVINILADAIGPGTVGVHGDS 153
Query: 89 QYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLF 148
QY+ T++ T LH FW IVFF E + + VVLSH+ S T ++N
Sbjct: 154 QYYFLTSAFLTMAIVFLHTFWGIVFFAACEKRRPLHIVGVVLSHLVTSGLT-FLNPMYEA 212
Query: 149 SVLFIIVFTLFTAMFAYKVIGGSKKTM 175
S++ I + TL A++A+ GG+ + +
Sbjct: 213 SLIPIYIITLGMALWAFVAAGGNYRNI 239
>gi|357614718|gb|EHJ69231.1| hypothetical protein KGM_12905 [Danaus plexippus]
Length = 240
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 96/168 (57%), Gaps = 8/168 (4%)
Query: 13 AFGPVIAMFLTTIMQDPV----KKSRGGLQYVSDRNTM-DNTYAMAYVSGLGYGTISAAF 67
AFG V A+ + + V K++ GL+ +S+ + + N +AYVSG G+G +S AF
Sbjct: 64 AFGMVFAILIQETFRFGVYLLLKRTESGLKEISENHEIGSNKAEIAYVSGFGFGAMSGAF 123
Query: 68 SLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVAS 127
+++NVL GPGT+GL+ ++YF T++ T C +LL+ FW+++FF G++ K+ +
Sbjct: 124 AIINVLADSIGPGTLGLRHGTEYFFVTSASMTLCMTLLNTFWTVIFFNGLDNKSYLKILW 183
Query: 128 VVLSHIFISSYTWYMNSSGLFSVLFI--IVFTLFTAMFAYKVIGGSKK 173
V+ SH +S + +N L+ I + + T ++K GGS K
Sbjct: 184 VIGSHFLVSGLS-LLNRKELYVATIIPSYIILVITLYISFKCAGGSSK 230
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK 31
MT EF C++ AFG +AMF TI DPV+
Sbjct: 1 MTAAEFFSCSLLAFGAPLAMFALTIANDPVR 31
>gi|62751363|ref|NP_001015843.1| anterior pharynx defective 1 homolog A [Xenopus (Silurana)
tropicalis]
gi|59808833|gb|AAH90132.1| anterior pharynx defective 1 homolog A [Xenopus (Silurana)
tropicalis]
Length = 247
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 83/147 (56%), Gaps = 2/147 (1%)
Query: 30 VKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGES 88
+KK+ GL +S D + + MAYVSG +G IS FS++N+L GPG +G+ G+S
Sbjct: 94 LKKADEGLATISEDGRSPISIQQMAYVSGFSFGIISGVFSVINILADAIGPGIVGVHGDS 153
Query: 89 QYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLF 148
QY+ T++ T LH FW IVFF E + + VVLSH+ S T ++N
Sbjct: 154 QYYFLTSAFLTMAIVFLHTFWGIVFFAACEKRKPLHIIGVVLSHLVASGLT-FLNPMYEA 212
Query: 149 SVLFIIVFTLFTAMFAYKVIGGSKKTM 175
S++ I + TL A++A+ GG+ + +
Sbjct: 213 SLIPIYIITLGMALWAFVAAGGNYQNI 239
>gi|443723977|gb|ELU12195.1| hypothetical protein CAPTEDRAFT_204741 [Capitella teleta]
Length = 249
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 78/136 (57%), Gaps = 5/136 (3%)
Query: 44 NTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFS 103
+ +++ + MAYV GLGYG + FSL+N+L ++GPGT+G+ G+ Q F ++ T C
Sbjct: 107 SLVNHRHLMAYVCGLGYGMVCGTFSLVNILADMAGPGTIGIYGDPQNFFLASAFMTLCMV 166
Query: 104 LLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSG----LFSVLFIIVFTLF 159
LLH FW I+FF G K VVLSH+ +S T +N L S+L +
Sbjct: 167 LLHTFWGIIFFDGFYTKKYYQPIVVVLSHLLVSCLT-LLNERQPPMYLASILPAYASLVA 225
Query: 160 TAMFAYKVIGGSKKTM 175
++A+ ++GGS ++M
Sbjct: 226 MGIWAFTIVGGSPRSM 241
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK 31
MT MEF GCT AFGP A+F+ TI +P++
Sbjct: 1 MTLMEFFGCTFIAFGPPAALFILTIANEPLR 31
>gi|345316876|ref|XP_001514807.2| PREDICTED: gamma-secretase subunit Aph-1b-like [Ornithorhynchus
anatinus]
Length = 222
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 88/159 (55%), Gaps = 7/159 (4%)
Query: 30 VKKSRGGLQYVSDRNTMD-NTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGES 88
+KK+ GL +S T+ + ++YVSGLG+G +S FSL+N+L GPG +G+ G+S
Sbjct: 58 LKKANKGLMTISQEETVPISVRQLSYVSGLGFGIMSGVFSLVNILADSLGPGIVGIHGDS 117
Query: 89 QYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLF 148
+ +++ T LLH+FW IVFF E K +A V+LSH+ +S T ++N
Sbjct: 118 PQYFLSSAFMTLAIVLLHIFWGIVFFDACENKKWWALALVILSHLLVSGLT-FLNPHYEG 176
Query: 149 SVLFIIVFTLFTAMFAYKVIGGSKKT-----MCNGENLI 182
S++ + L ++A+ GGS + MC ++ +
Sbjct: 177 SLIPSYIIMLLMGVWAFFTAGGSLRNLKRCLMCRDKDFL 215
>gi|126313758|ref|XP_001370546.1| PREDICTED: gamma-secretase subunit APH-1A-like [Monodelphis
domestica]
Length = 265
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 82/147 (55%), Gaps = 2/147 (1%)
Query: 30 VKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGES 88
+KK+ GL +S D + + MAYVSGL +G IS FS++N+L GPG +G+ G+S
Sbjct: 94 LKKADEGLASLSEDGRSPISIRQMAYVSGLSFGIISGVFSVINILADALGPGVVGIHGDS 153
Query: 89 QYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLF 148
Y+ T++ T LLH FW IVFF E + + VV SH+ S T ++N
Sbjct: 154 PYYFLTSAFLTAAIILLHTFWGIVFFDACERRRYWALGLVVGSHLLTSGLT-FLNPRYEA 212
Query: 149 SVLFIIVFTLFTAMFAYKVIGGSKKTM 175
S+L I TL ++A+ GGS +++
Sbjct: 213 SLLPIYAVTLSMGIWAFITAGGSLRSI 239
>gi|432958682|ref|XP_004086105.1| PREDICTED: gamma-secretase subunit Aph-1b-like [Oryzias latipes]
Length = 258
Score = 89.0 bits (219), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 93/167 (55%), Gaps = 6/167 (3%)
Query: 14 FGPVIAMFLTTIMQ----DPVKKSRGGLQYVSDRNTMD-NTYAMAYVSGLGYGTISAAFS 68
FG V+++ L + +KK+ GL +S TM + +AYVSGLG+G +S AFS
Sbjct: 74 FGVVLSVLLQETFRFGYYKLLKKANEGLLTLSQEETMPISIRQLAYVSGLGFGFMSGAFS 133
Query: 69 LLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASV 128
++N+L +GPGT+G+ G+SQ++ +++ T LLH+FW +VFF E + V V
Sbjct: 134 VVNILADSAGPGTIGIHGDSQHYFLSSAFMTMAIILLHMFWGVVFFDACEKRCWWAVGLV 193
Query: 129 VLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTM 175
V+ H+ +S T + N +++ V ++A+ GGS + +
Sbjct: 194 VIVHLLVSCLT-FQNPDYTATLVPAYVILFGMGVWAFYTAGGSLRNL 239
Score = 39.3 bits (90), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK 31
MT F GCT AFGP I++FL TI ++P++
Sbjct: 1 MTAAVFFGCTFIAFGPAISLFLFTIAREPLR 31
>gi|395535983|ref|XP_003770000.1| PREDICTED: gamma-secretase subunit APH-1A [Sarcophilus harrisii]
Length = 273
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 90/167 (53%), Gaps = 6/167 (3%)
Query: 14 FGPVIAMFLTTIMQ----DPVKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFS 68
FG +++ L + + +KK+ GL +S D + + MAYVSGL +G IS FS
Sbjct: 82 FGAAVSVLLQEVFRFAYYKLLKKADEGLASLSEDGRSPISIRQMAYVSGLSFGIISGVFS 141
Query: 69 LLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASV 128
++N+L GPG +G+ G+S ++ T++ T LLH FW IVFF E + + V
Sbjct: 142 VINILADALGPGVVGIHGDSPFYFLTSAFLTAALILLHTFWGIVFFDACERRRYWALGLV 201
Query: 129 VLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTM 175
V SH+ S T ++N S+L I TL ++A+ GGS +++
Sbjct: 202 VGSHLLTSGLT-FLNPWYEASLLPIYAVTLSMGIWAFITAGGSLRSI 247
>gi|344238689|gb|EGV94792.1| Gamma-secretase subunit APH-1A [Cricetulus griseus]
Length = 247
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 91/167 (54%), Gaps = 6/167 (3%)
Query: 14 FGPVIAMFLTTIMQ----DPVKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFS 68
FG +++ L + + +KK+ GL +S D + + MAYVSGL +G IS FS
Sbjct: 74 FGAAVSVLLQEVFRFAYYKLLKKADEGLASLSEDGRSPISIRQMAYVSGLSFGIISGVFS 133
Query: 69 LLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASV 128
++N+L GPG +G+ G+S Y+ T++ T LLH FW +VFF E + ++ V
Sbjct: 134 VINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFDACERRRYWALSLV 193
Query: 129 VLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTM 175
V SH+ S T ++N S+L I T+ ++A+ GGS +++
Sbjct: 194 VGSHLLTSGLT-FLNPWYEASLLPIYAVTVSMGLWAFITAGGSLRSI 239
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 6 FLGCTMTAFGPVIAMFLTTIMQDPVK 31
F GCT AFGP A+FL T+ DP++
Sbjct: 6 FFGCTFVAFGPAFALFLITVAGDPLR 31
>gi|426216484|ref|XP_004002492.1| PREDICTED: gamma-secretase subunit APH-1A isoform 1 [Ovis aries]
Length = 265
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 90/167 (53%), Gaps = 6/167 (3%)
Query: 14 FGPVIAMFLTTIMQ----DPVKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFS 68
FG +++ L + + +KK+ GL +S D + + MAYVSGL +G IS FS
Sbjct: 74 FGAAVSVLLQEVFRFAYYKLLKKADEGLASLSEDGRSPISIRQMAYVSGLSFGIISGVFS 133
Query: 69 LLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASV 128
++N+L GPG +G+ G+S Y+ T++ T LLH FW +VFF E + + V
Sbjct: 134 VINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFDACERRRYWALGLV 193
Query: 129 VLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTM 175
V SH+ S T ++N S+L I T+ ++A+ GGS +++
Sbjct: 194 VGSHLLTSGLT-FLNPWYEASLLPIYAVTVSMGLWAFTTAGGSFRSI 239
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 6 FLGCTMTAFGPVIAMFLTTIMQDPVK 31
F GCT AFGP A+FL T+ DP++
Sbjct: 6 FFGCTFVAFGPAFALFLITVAGDPLR 31
>gi|354472921|ref|XP_003498685.1| PREDICTED: gamma-secretase subunit APH-1A-like [Cricetulus griseus]
Length = 265
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 91/167 (54%), Gaps = 6/167 (3%)
Query: 14 FGPVIAMFLTTIMQ----DPVKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFS 68
FG +++ L + + +KK+ GL +S D + + MAYVSGL +G IS FS
Sbjct: 74 FGAAVSVLLQEVFRFAYYKLLKKADEGLASLSEDGRSPISIRQMAYVSGLSFGIISGVFS 133
Query: 69 LLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASV 128
++N+L GPG +G+ G+S Y+ T++ T LLH FW +VFF E + ++ V
Sbjct: 134 VINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFDACERRRYWALSLV 193
Query: 129 VLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTM 175
V SH+ S T ++N S+L I T+ ++A+ GGS +++
Sbjct: 194 VGSHLLTSGLT-FLNPWYEASLLPIYAVTVSMGLWAFITAGGSLRSI 239
Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 6 FLGCTMTAFGPVIAMFLTTIMQDPVK 31
F GCT AFGP A+FL T+ DP++
Sbjct: 6 FFGCTFVAFGPAFALFLITVAGDPLR 31
>gi|344275494|ref|XP_003409547.1| PREDICTED: gamma-secretase subunit APH-1A-like [Loxodonta africana]
Length = 265
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 90/167 (53%), Gaps = 6/167 (3%)
Query: 14 FGPVIAMFLTTIMQ----DPVKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFS 68
FG +++ L + + +KK+ GL +S D + + MAYVSGL +G IS FS
Sbjct: 74 FGAAVSVLLQEVFRFAYYKLLKKADEGLASLSEDGRSPISIRQMAYVSGLSFGIISGVFS 133
Query: 69 LLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASV 128
++N+L GPG +G+ G+S Y+ T++ T LLH FW +VFF E + + V
Sbjct: 134 VINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFDACERRRYWALGLV 193
Query: 129 VLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTM 175
V SH+ S T ++N S+L I T+ ++A+ GGS +++
Sbjct: 194 VGSHLLTSGLT-FLNPWYEASLLPIYAVTVSMGLWAFITAGGSLRSI 239
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 6 FLGCTMTAFGPVIAMFLTTIMQDPVK 31
F GCT AFGP A+FL T+ DP++
Sbjct: 6 FFGCTFVAFGPAFALFLITVAGDPLR 31
>gi|149030630|gb|EDL85667.1| anterior pharynx defective 1a homolog (C. elegans), isoform CRA_a
[Rattus norvegicus]
Length = 265
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 90/167 (53%), Gaps = 6/167 (3%)
Query: 14 FGPVIAMFLTTIMQ----DPVKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFS 68
FG +++ L + + +KK+ GL +S D + + MAYVSGL +G IS FS
Sbjct: 74 FGAAVSVLLQEVFRFAYYKLLKKADEGLASLSEDGRSPISIRQMAYVSGLSFGIISGVFS 133
Query: 69 LLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASV 128
++N+L GPG +G+ G+S Y+ T++ T LLH FW +VFF E + + V
Sbjct: 134 VINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFDACERRRYWALGLV 193
Query: 129 VLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTM 175
V SH+ S T ++N S+L I T+ ++A+ GGS +++
Sbjct: 194 VGSHLLTSGLT-FLNPWYEASLLPIYAVTVSMGLWAFVTAGGSLRSI 239
Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 6 FLGCTMTAFGPVIAMFLTTIMQDPVK 31
F GCT AFGP A+FL T+ DP++
Sbjct: 6 FFGCTFVAFGPAFALFLITVAGDPLR 31
>gi|351705675|gb|EHB08594.1| Gamma-secretase subunit APH-1A [Heterocephalus glaber]
Length = 265
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 91/169 (53%), Gaps = 6/169 (3%)
Query: 14 FGPVIAMFLTTIMQ----DPVKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFS 68
FG +++ L + + +KK+ GL +S D + + MAYVSGL +G IS FS
Sbjct: 74 FGAAVSVLLQEVFRFAYYKLLKKADEGLASLSEDGRSPISIRQMAYVSGLSFGIISGVFS 133
Query: 69 LLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASV 128
++N+L GPG +G+ G+S Y+ T++ T LLH FW +VFF E + + V
Sbjct: 134 VINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFDACERRRYWALGLV 193
Query: 129 VLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTMCN 177
V SH+ S T ++N S+L I T+ ++A+ GGS +++ +
Sbjct: 194 VGSHLLTSGLT-FLNPWYEASLLPIYAVTVSMGLWAFITAGGSLRSIQH 241
Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 6 FLGCTMTAFGPVIAMFLTTIMQDPVK 31
F GCT AFGP A+FL T+ DP++
Sbjct: 6 FFGCTFVAFGPAFALFLITVAGDPLR 31
>gi|403302765|ref|XP_003942023.1| PREDICTED: gamma-secretase subunit APH-1A isoform 1 [Saimiri
boliviensis boliviensis]
Length = 346
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 90/167 (53%), Gaps = 6/167 (3%)
Query: 14 FGPVIAMFLTTIMQ----DPVKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFS 68
FG +++ L + + +KK+ GL +S D + + MAYVSGL +G IS FS
Sbjct: 155 FGAAVSVLLQEVFRFAYYKLLKKADEGLASLSEDGRSPISIRQMAYVSGLSFGIISGVFS 214
Query: 69 LLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASV 128
++N+L GPG +G+ G+S Y+ T++ T LLH FW +VFF E + + V
Sbjct: 215 VINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFDACERRRYWALGLV 274
Query: 129 VLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTM 175
V SH+ S T ++N S+L I T+ ++A+ GGS +++
Sbjct: 275 VGSHLLTSGLT-FLNPWYEASLLPIYAVTVSMGLWAFITAGGSLRSI 320
Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 6 FLGCTMTAFGPVIAMFLTTIMQDPVK 31
F GCT AFGP A+FL T+ DP++
Sbjct: 87 FFGCTFVAFGPAFALFLITVAGDPLR 112
>gi|149751205|ref|XP_001489214.1| PREDICTED: gamma-secretase subunit APH-1A-like isoform 1 [Equus
caballus]
Length = 265
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 90/167 (53%), Gaps = 6/167 (3%)
Query: 14 FGPVIAMFLTTIMQ----DPVKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFS 68
FG +++ L + + +KK+ GL +S D + + MAYVSGL +G IS FS
Sbjct: 74 FGAAVSVLLQEVFRFAYYKLLKKADEGLASLSEDGRSPISIRQMAYVSGLSFGIISGVFS 133
Query: 69 LLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASV 128
++N+L GPG +G+ G+S Y+ T++ T LLH FW +VFF E + + V
Sbjct: 134 VINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFDACERRRYWALGLV 193
Query: 129 VLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTM 175
V SH+ S T ++N S+L I T+ ++A+ GGS +++
Sbjct: 194 VGSHLLTSGLT-FLNPWYEASLLPIYAVTVSMGLWAFITAGGSLRSI 239
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 6 FLGCTMTAFGPVIAMFLTTIMQDPVK 31
F GCT AFGP A+FL T+ DP++
Sbjct: 6 FFGCTFVAFGPAFALFLITVAGDPLR 31
>gi|348586387|ref|XP_003478950.1| PREDICTED: gamma-secretase subunit APH-1A-like [Cavia porcellus]
Length = 265
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 90/167 (53%), Gaps = 6/167 (3%)
Query: 14 FGPVIAMFLTTIMQ----DPVKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFS 68
FG +++ L + + +KK+ GL +S D + + MAYVSGL +G IS FS
Sbjct: 74 FGAAVSVLLQEVFRFAYYKLLKKADEGLASLSEDGRSPISIRQMAYVSGLSFGIISGVFS 133
Query: 69 LLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASV 128
++N+L GPG +G+ G+S Y+ T++ T LLH FW +VFF E + + V
Sbjct: 134 VINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFDACERRRYWALGLV 193
Query: 129 VLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTM 175
V SH+ S T ++N S+L I T+ ++A+ GGS +++
Sbjct: 194 VGSHLLTSGLT-FLNPWYEASLLPIYAVTVSMGLWAFITAGGSLRSI 239
Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 6 FLGCTMTAFGPVIAMFLTTIMQDPVK 31
F GCT AFGP A+FL T+ DP++
Sbjct: 6 FFGCTFVAFGPAFALFLITVAGDPLR 31
>gi|117606362|ref|NP_001071096.1| gamma-secretase subunit APH-1A isoform 1 [Homo sapiens]
gi|388490162|ref|NP_001252969.1| anterior pharynx defective 1 homolog A [Macaca mulatta]
gi|55588124|ref|XP_513772.1| PREDICTED: gamma-secretase subunit APH-1A isoform 5 [Pan
troglodytes]
gi|297663753|ref|XP_002810334.1| PREDICTED: gamma-secretase subunit APH-1A [Pongo abelii]
gi|332220135|ref|XP_003259213.1| PREDICTED: gamma-secretase subunit APH-1A [Nomascus leucogenys]
gi|397492910|ref|XP_003817363.1| PREDICTED: gamma-secretase subunit APH-1A [Pan paniscus]
gi|402856067|ref|XP_003892624.1| PREDICTED: gamma-secretase subunit APH-1A [Papio anubis]
gi|426331302|ref|XP_004026621.1| PREDICTED: gamma-secretase subunit APH-1A [Gorilla gorilla gorilla]
gi|37077707|sp|Q96BI3.1|APH1A_HUMAN RecName: Full=Gamma-secretase subunit APH-1A; Short=APH-1a;
AltName: Full=Aph-1alpha; AltName:
Full=Presenilin-stabilization factor
gi|15990414|gb|AAH15568.1| Anterior pharynx defective 1 homolog A (C. elegans) [Homo sapiens]
gi|18088501|gb|AAH20590.1| Anterior pharynx defective 1 homolog A (C. elegans) [Homo sapiens]
gi|25989510|gb|AAM61956.1| presenilin stabilization factor b [Homo sapiens]
gi|56204869|emb|CAI22811.1| anterior pharynx defective 1 homolog A (C. elegans) [Homo sapiens]
gi|119573950|gb|EAW53565.1| anterior pharynx defective 1 homolog A (C. elegans), isoform CRA_a
[Homo sapiens]
gi|325464231|gb|ADZ15886.1| anterior pharynx defective 1 homolog A (C. elegans) [synthetic
construct]
gi|355558387|gb|EHH15167.1| hypothetical protein EGK_01222 [Macaca mulatta]
gi|355745641|gb|EHH50266.1| hypothetical protein EGM_01071 [Macaca fascicularis]
gi|380813326|gb|AFE78537.1| gamma-secretase subunit APH-1A isoform 1 [Macaca mulatta]
gi|383412095|gb|AFH29261.1| gamma-secretase subunit APH-1A isoform 1 [Macaca mulatta]
gi|384947430|gb|AFI37320.1| gamma-secretase subunit APH-1A isoform 1 [Macaca mulatta]
gi|410222372|gb|JAA08405.1| anterior pharynx defective 1 homolog A [Pan troglodytes]
gi|410256598|gb|JAA16266.1| anterior pharynx defective 1 homolog A [Pan troglodytes]
gi|410300788|gb|JAA28994.1| anterior pharynx defective 1 homolog A [Pan troglodytes]
gi|410342883|gb|JAA40388.1| anterior pharynx defective 1 homolog A [Pan troglodytes]
Length = 265
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 90/167 (53%), Gaps = 6/167 (3%)
Query: 14 FGPVIAMFLTTIMQ----DPVKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFS 68
FG +++ L + + +KK+ GL +S D + + MAYVSGL +G IS FS
Sbjct: 74 FGAAVSVLLQEVFRFAYYKLLKKADEGLASLSEDGRSPISIRQMAYVSGLSFGIISGVFS 133
Query: 69 LLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASV 128
++N+L GPG +G+ G+S Y+ T++ T LLH FW +VFF E + + V
Sbjct: 134 VINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFDACERRRYWALGLV 193
Query: 129 VLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTM 175
V SH+ S T ++N S+L I T+ ++A+ GGS +++
Sbjct: 194 VGSHLLTSGLT-FLNPWYEASLLPIYAVTVSMGLWAFITAGGSLRSI 239
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 6 FLGCTMTAFGPVIAMFLTTIMQDPVK 31
F GCT AFGP A+FL T+ DP++
Sbjct: 6 FFGCTFVAFGPAFALFLITVAGDPLR 31
>gi|62079241|ref|NP_001014277.1| anterior pharynx defective 1 homolog A [Rattus norvegicus]
gi|56268871|gb|AAH87081.1| Anterior pharynx defective 1 homolog A (C. elegans) [Rattus
norvegicus]
gi|149030631|gb|EDL85668.1| anterior pharynx defective 1a homolog (C. elegans), isoform CRA_b
[Rattus norvegicus]
Length = 247
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 90/167 (53%), Gaps = 6/167 (3%)
Query: 14 FGPVIAMFLTTIMQ----DPVKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFS 68
FG +++ L + + +KK+ GL +S D + + MAYVSGL +G IS FS
Sbjct: 74 FGAAVSVLLQEVFRFAYYKLLKKADEGLASLSEDGRSPISIRQMAYVSGLSFGIISGVFS 133
Query: 69 LLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASV 128
++N+L GPG +G+ G+S Y+ T++ T LLH FW +VFF E + + V
Sbjct: 134 VINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFDACERRRYWALGLV 193
Query: 129 VLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTM 175
V SH+ S T ++N S+L I T+ ++A+ GGS +++
Sbjct: 194 VGSHLLTSGLT-FLNPWYEASLLPIYAVTVSMGLWAFVTAGGSLRSI 239
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 6 FLGCTMTAFGPVIAMFLTTIMQDPVK 31
F GCT AFGP A+FL T+ DP++
Sbjct: 6 FFGCTFVAFGPAFALFLITVAGDPLR 31
>gi|189339191|ref|NP_666246.1| gamma-secretase subunit APH-1A isoform 2 [Mus musculus]
gi|37077149|sp|Q8BVF7.2|APH1A_MOUSE RecName: Full=Gamma-secretase subunit APH-1A; Short=APH-1a;
AltName: Full=Aph-1alpha
gi|18848275|gb|AAH24111.1| Aph1a protein [Mus musculus]
gi|148706904|gb|EDL38851.1| mCG16760, isoform CRA_a [Mus musculus]
Length = 265
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 90/167 (53%), Gaps = 6/167 (3%)
Query: 14 FGPVIAMFLTTIMQ----DPVKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFS 68
FG +++ L + + +KK+ GL +S D + + MAYVSGL +G IS FS
Sbjct: 74 FGAAVSVLLQEVFRFAYYKLLKKADEGLASLSEDGRSPISIRQMAYVSGLSFGIISGVFS 133
Query: 69 LLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASV 128
++N+L GPG +G+ G+S Y+ T++ T LLH FW +VFF E + + V
Sbjct: 134 VINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFDACERRRYWALGLV 193
Query: 129 VLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTM 175
V SH+ S T ++N S+L I T+ ++A+ GGS +++
Sbjct: 194 VGSHLLTSGLT-FLNPWYEASLLPIYAVTVSMGLWAFITAGGSLRSI 239
Score = 36.6 bits (83), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 6 FLGCTMTAFGPVIAMFLTTIMQDPVK 31
F GCT AFGP ++FL T+ DP++
Sbjct: 6 FFGCTFVAFGPAFSLFLITVAGDPLR 31
>gi|12654775|gb|AAH01230.1| Anterior pharynx defective 1 homolog A (C. elegans) [Homo sapiens]
gi|325464633|gb|ADZ16087.1| anterior pharynx defective 1 homolog A (C. elegans) [synthetic
construct]
Length = 265
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 90/167 (53%), Gaps = 6/167 (3%)
Query: 14 FGPVIAMFLTTIMQ----DPVKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFS 68
FG +++ L + + +KK+ GL +S D + + MAYVSGL +G IS FS
Sbjct: 74 FGAAVSVLLQEVFRFAYYKLLKKADEGLASLSEDGRSPISIRQMAYVSGLSFGIISGVFS 133
Query: 69 LLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASV 128
++N+L GPG +G+ G+S Y+ T++ T LLH FW +VFF E + + V
Sbjct: 134 VINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFDACERRRYWALGLV 193
Query: 129 VLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTM 175
V SH+ S T ++N S+L I T+ ++A+ GGS +++
Sbjct: 194 VGSHLLTSGLT-FLNPWYEASLLPIYAVTVSMGLWAFITAGGSIRSI 239
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 6 FLGCTMTAFGPVIAMFLTTIMQDPVK 31
F GCT AFGP A+FL T+ DP++
Sbjct: 6 FFGCTFVAFGPAFALFLITVAGDPLR 31
>gi|291398055|ref|XP_002715647.1| PREDICTED: anterior pharynx defective 1 homolog A [Oryctolagus
cuniculus]
gi|301767973|ref|XP_002919359.1| PREDICTED: gamma-secretase subunit APH-1A-like [Ailuropoda
melanoleuca]
gi|410968238|ref|XP_003990614.1| PREDICTED: gamma-secretase subunit APH-1A isoform 1 [Felis catus]
gi|281352901|gb|EFB28485.1| hypothetical protein PANDA_008026 [Ailuropoda melanoleuca]
gi|444515106|gb|ELV10768.1| Gamma-secretase subunit APH-1A [Tupaia chinensis]
Length = 265
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 90/167 (53%), Gaps = 6/167 (3%)
Query: 14 FGPVIAMFLTTIMQ----DPVKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFS 68
FG +++ L + + +KK+ GL +S D + + MAYVSGL +G IS FS
Sbjct: 74 FGAAVSVLLQEVFRFAYYKLLKKADEGLASLSEDGRSPISIRQMAYVSGLSFGIISGVFS 133
Query: 69 LLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASV 128
++N+L GPG +G+ G+S Y+ T++ T LLH FW +VFF E + + V
Sbjct: 134 VINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFDACERRRYWALGLV 193
Query: 129 VLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTM 175
V SH+ S T ++N S+L I T+ ++A+ GGS +++
Sbjct: 194 VGSHLLTSGLT-FLNPWYEASLLPIYAVTVSMGLWAFITAGGSLRSI 239
Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 6 FLGCTMTAFGPVIAMFLTTIMQDPVK 31
F GCT AFGP A+FL T+ DP++
Sbjct: 6 FFGCTFVAFGPAFALFLITVAGDPLR 31
>gi|90083290|dbj|BAE90727.1| unnamed protein product [Macaca fascicularis]
Length = 247
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 90/167 (53%), Gaps = 6/167 (3%)
Query: 14 FGPVIAMFLTTIMQ----DPVKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFS 68
FG +++ L + + +KK+ GL +S D + + MAYVSGL +G IS FS
Sbjct: 74 FGAAVSVLLQEVFRFAYYKLLKKADEGLAPLSEDGRSPISIRQMAYVSGLSFGIISGVFS 133
Query: 69 LLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASV 128
++N+L GPG +G+ G+S Y+ T++ T LLH FW +VFF E + + V
Sbjct: 134 VINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFDACERRRYWALGLV 193
Query: 129 VLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTM 175
V SH+ S T ++N S+L I T+ ++A+ GGS +++
Sbjct: 194 VGSHLLTSGLT-FLNPWYEASLLPIYAVTVSMGLWAFITAGGSLRSI 239
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 6 FLGCTMTAFGPVIAMFLTTIMQDPVK 31
F GCT AFGP A+FL T+ DP++
Sbjct: 6 FFGCTFVAFGPAFALFLITVAGDPLR 31
>gi|296228673|ref|XP_002759910.1| PREDICTED: gamma-secretase subunit APH-1A [Callithrix jacchus]
Length = 265
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 90/167 (53%), Gaps = 6/167 (3%)
Query: 14 FGPVIAMFLTTIMQ----DPVKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFS 68
FG +++ L + + +KK+ GL +S D + + MAYVSGL +G IS FS
Sbjct: 74 FGAAVSVLLQEVFRFAYYKLLKKADEGLASLSEDGRSPISIRQMAYVSGLSFGIISGVFS 133
Query: 69 LLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASV 128
++N+L GPG +G+ G+S Y+ T++ T LLH FW +VFF E + + V
Sbjct: 134 VINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFDACERRRYWALGLV 193
Query: 129 VLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTM 175
V SH+ S T ++N S+L I T+ ++A+ GGS +++
Sbjct: 194 VGSHLLTSGLT-FLNPWYEASLLPIYAVTVSMGLWAFITAGGSLRSV 239
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 6 FLGCTMTAFGPVIAMFLTTIMQDPVK 31
F GCT AFGP A+FL T+ DP++
Sbjct: 6 FFGCTFVAFGPAFALFLITVAGDPLR 31
>gi|22203751|ref|NP_666216.1| gamma-secretase subunit APH-1A isoform 1 [Mus musculus]
gi|15341753|gb|AAH12406.1| Anterior pharynx defective 1a homolog (C. elegans) [Mus musculus]
gi|34786036|gb|AAH57865.1| Anterior pharynx defective 1a homolog (C. elegans) [Mus musculus]
gi|74203868|dbj|BAE28531.1| unnamed protein product [Mus musculus]
gi|148706906|gb|EDL38853.1| mCG16760, isoform CRA_c [Mus musculus]
gi|148707365|gb|EDL39312.1| mCG124590 [Mus musculus]
Length = 247
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 90/167 (53%), Gaps = 6/167 (3%)
Query: 14 FGPVIAMFLTTIMQ----DPVKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFS 68
FG +++ L + + +KK+ GL +S D + + MAYVSGL +G IS FS
Sbjct: 74 FGAAVSVLLQEVFRFAYYKLLKKADEGLASLSEDGRSPISIRQMAYVSGLSFGIISGVFS 133
Query: 69 LLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASV 128
++N+L GPG +G+ G+S Y+ T++ T LLH FW +VFF E + + V
Sbjct: 134 VINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFDACERRRYWALGLV 193
Query: 129 VLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTM 175
V SH+ S T ++N S+L I T+ ++A+ GGS +++
Sbjct: 194 VGSHLLTSGLT-FLNPWYEASLLPIYAVTVSMGLWAFITAGGSLRSI 239
Score = 36.6 bits (83), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 6 FLGCTMTAFGPVIAMFLTTIMQDPVK 31
F GCT AFGP ++FL T+ DP++
Sbjct: 6 FFGCTFVAFGPAFSLFLITVAGDPLR 31
>gi|440906706|gb|ELR56935.1| Gamma-secretase subunit APH-1A [Bos grunniens mutus]
Length = 265
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 90/167 (53%), Gaps = 6/167 (3%)
Query: 14 FGPVIAMFLTTIMQ----DPVKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFS 68
FG +++ L + + +KK+ GL +S D + + MAYVSGL +G IS FS
Sbjct: 74 FGAAVSVLLQEVFRFAYYKLLKKADEGLASLSEDGRSPISIRQMAYVSGLSFGIISGVFS 133
Query: 69 LLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASV 128
++N+L GPG +G+ G+S Y+ T++ T LLH FW +VFF E + + V
Sbjct: 134 VINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFDACERRRYWALGLV 193
Query: 129 VLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTM 175
V SH+ S T ++N S+L I T+ ++A+ GGS +++
Sbjct: 194 VGSHLLTSGLT-FLNPWYEASLLPIYAVTISMGLWAFITAGGSFRSI 239
Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 6 FLGCTMTAFGPVIAMFLTTIMQDPVK 31
F GCT AFGP A+FL T+ DP++
Sbjct: 6 FFGCTFVAFGPAFALFLITVAGDPLR 31
>gi|431896610|gb|ELK06022.1| Gamma-secretase subunit APH-1A [Pteropus alecto]
Length = 265
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 90/167 (53%), Gaps = 6/167 (3%)
Query: 14 FGPVIAMFLTTIMQ----DPVKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFS 68
FG +++ L + + +KK+ GL +S D + + MAYVSGL +G IS FS
Sbjct: 74 FGAAVSVLLQEVFRFAYYKLLKKADEGLASLSEDGRSPISIRQMAYVSGLSFGIISGVFS 133
Query: 69 LLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASV 128
++N+L GPG +G+ G+S Y+ T++ T LLH FW +VFF E + + V
Sbjct: 134 VINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFDACERRRYWTLGLV 193
Query: 129 VLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTM 175
V SH+ S T ++N S+L I T+ ++A+ GGS +++
Sbjct: 194 VGSHLLTSGLT-FLNPWYEASLLPICAVTVSMGLWAFITAGGSLQSI 239
Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 6 FLGCTMTAFGPVIAMFLTTIMQDPVK 31
F GCT AFGP A+FL T+ DP++
Sbjct: 6 FFGCTFVAFGPAFALFLITVAGDPLR 31
>gi|117606357|ref|NP_057106.2| gamma-secretase subunit APH-1A isoform 2 [Homo sapiens]
gi|14250557|gb|AAH08732.1| Anterior pharynx defective 1 homolog A (C. elegans) [Homo sapiens]
gi|14550502|gb|AAH09501.1| Anterior pharynx defective 1 homolog A (C. elegans) [Homo sapiens]
gi|17389295|gb|AAH17699.1| Anterior pharynx defective 1 homolog A (C. elegans) [Homo sapiens]
gi|22761292|dbj|BAC11529.1| unnamed protein product [Homo sapiens]
gi|25989508|gb|AAM61955.1| presenilin stabilization factor a [Homo sapiens]
gi|37183020|gb|AAQ89310.1| GAAV579 [Homo sapiens]
gi|56204870|emb|CAI22812.1| anterior pharynx defective 1 homolog A (C. elegans) [Homo sapiens]
gi|119573951|gb|EAW53566.1| anterior pharynx defective 1 homolog A (C. elegans), isoform CRA_b
[Homo sapiens]
gi|119573952|gb|EAW53567.1| anterior pharynx defective 1 homolog A (C. elegans), isoform CRA_b
[Homo sapiens]
gi|193786106|dbj|BAG51389.1| unnamed protein product [Homo sapiens]
gi|312150240|gb|ADQ31632.1| anterior pharynx defective 1 homolog A (C. elegans) [synthetic
construct]
gi|343958930|dbj|BAK63320.1| gamma-secretase subunit APH-1A [Pan troglodytes]
gi|380813324|gb|AFE78536.1| gamma-secretase subunit APH-1A isoform 2 [Macaca mulatta]
gi|383412093|gb|AFH29260.1| gamma-secretase subunit APH-1A isoform 2 [Macaca mulatta]
gi|384947428|gb|AFI37319.1| gamma-secretase subunit APH-1A isoform 2 [Macaca mulatta]
gi|410222374|gb|JAA08406.1| anterior pharynx defective 1 homolog A [Pan troglodytes]
gi|410256600|gb|JAA16267.1| anterior pharynx defective 1 homolog A [Pan troglodytes]
gi|410300790|gb|JAA28995.1| anterior pharynx defective 1 homolog A [Pan troglodytes]
gi|410342885|gb|JAA40389.1| anterior pharynx defective 1 homolog A [Pan troglodytes]
Length = 247
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 90/167 (53%), Gaps = 6/167 (3%)
Query: 14 FGPVIAMFLTTIMQ----DPVKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFS 68
FG +++ L + + +KK+ GL +S D + + MAYVSGL +G IS FS
Sbjct: 74 FGAAVSVLLQEVFRFAYYKLLKKADEGLASLSEDGRSPISIRQMAYVSGLSFGIISGVFS 133
Query: 69 LLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASV 128
++N+L GPG +G+ G+S Y+ T++ T LLH FW +VFF E + + V
Sbjct: 134 VINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFDACERRRYWALGLV 193
Query: 129 VLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTM 175
V SH+ S T ++N S+L I T+ ++A+ GGS +++
Sbjct: 194 VGSHLLTSGLT-FLNPWYEASLLPIYAVTVSMGLWAFITAGGSLRSI 239
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 6 FLGCTMTAFGPVIAMFLTTIMQDPVK 31
F GCT AFGP A+FL T+ DP++
Sbjct: 6 FFGCTFVAFGPAFALFLITVAGDPLR 31
>gi|4929623|gb|AAD34072.1|AF151835_1 CGI-78 protein [Homo sapiens]
gi|24637562|gb|AAN63816.1|AF508787_1 presenilin stabilization factor [Homo sapiens]
Length = 251
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 90/167 (53%), Gaps = 6/167 (3%)
Query: 14 FGPVIAMFLTTIMQ----DPVKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFS 68
FG +++ L + + +KK+ GL +S D + + MAYVSGL +G IS FS
Sbjct: 74 FGAAVSVLLQEVFRFAYYKLLKKADEGLASLSEDGRSPISIRQMAYVSGLSFGIISGVFS 133
Query: 69 LLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASV 128
++N+L GPG +G+ G+S Y+ T++ T LLH FW +VFF E + + V
Sbjct: 134 VINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFDACERRRYWALGLV 193
Query: 129 VLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTM 175
V SH+ S T ++N S+L I T+ ++A+ GGS +++
Sbjct: 194 VGSHLLTSGLT-FLNPWYEASLLPIYAVTVSMGLWAFITAGGSLRSI 239
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 6 FLGCTMTAFGPVIAMFLTTIMQDPVK 31
F GCT AFGP A+FL T+ DP++
Sbjct: 6 FFGCTFVAFGPAFALFLITVAGDPLR 31
>gi|195996159|ref|XP_002107948.1| hypothetical protein TRIADDRAFT_19466 [Trichoplax adhaerens]
gi|190588724|gb|EDV28746.1| hypothetical protein TRIADDRAFT_19466 [Trichoplax adhaerens]
Length = 252
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 70/107 (65%), Gaps = 4/107 (3%)
Query: 30 VKKSRGGLQYVSDRNTMDNT----YAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLK 85
+KK+ GL ++ +T+ T + +AYV+G G+G +S AFS++N+L SGPGT+G+K
Sbjct: 86 MKKADKGLLSITTSSTISQTRQRKHKIAYVAGFGFGVMSGAFSVVNLLATASGPGTVGIK 145
Query: 86 GESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSH 132
G S F +++IFT F LL++FWS++ F G + +N +A V +H
Sbjct: 146 GNSDLFFLSSAIFTSIFILLNIFWSVIIFDGFDKRNWKKIAYVFATH 192
>gi|417397795|gb|JAA45931.1| Putative conserved plasma membrane protein [Desmodus rotundus]
Length = 247
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 90/167 (53%), Gaps = 6/167 (3%)
Query: 14 FGPVIAMFLTTIMQ----DPVKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFS 68
FG +++ L + + +KK+ GL +S D + + MAYVSGL +G IS FS
Sbjct: 74 FGAAVSVLLQEVFRFAYYKLLKKADEGLASLSEDGRSPISIRQMAYVSGLSFGIISGVFS 133
Query: 69 LLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASV 128
++N+L GPG +G+ G+S Y+ T++ T LLH FW +VFF E + + V
Sbjct: 134 VINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFDACERRRYWTLGLV 193
Query: 129 VLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTM 175
V SH+ S T ++N S+L I T+ ++A+ GGS +++
Sbjct: 194 VGSHLLTSGLT-FLNPWYEASLLPIYAVTVSMGLWAFITAGGSLRSI 239
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 6 FLGCTMTAFGPVIAMFLTTIMQDPVK 31
F GCT AFGP A+FL T+ DP++
Sbjct: 6 FFGCTFVAFGPAFALFLITVAGDPLR 31
>gi|77736285|ref|NP_001029842.1| gamma-secretase subunit APH-1A [Bos taurus]
gi|74267816|gb|AAI03091.1| Anterior pharynx defective 1 homolog A (C. elegans) [Bos taurus]
gi|296489570|tpg|DAA31683.1| TPA: anterior pharynx defective 1 homolog A [Bos taurus]
Length = 247
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 90/167 (53%), Gaps = 6/167 (3%)
Query: 14 FGPVIAMFLTTIMQ----DPVKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFS 68
FG +++ L + + +KK+ GL +S D + + MAYVSGL +G IS FS
Sbjct: 74 FGAAVSVLLQEVFRFAYYKLLKKADEGLASLSEDGRSPISIRQMAYVSGLSFGIISGVFS 133
Query: 69 LLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASV 128
++N+L GPG +G+ G+S Y+ T++ T LLH FW +VFF E + + V
Sbjct: 134 VINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFDACERRRYWALGLV 193
Query: 129 VLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTM 175
V SH+ S T ++N S+L I T+ ++A+ GGS +++
Sbjct: 194 VGSHLLTSGLT-FLNPWYEASLLPIYAVTISMGLWAFITAGGSFRSI 239
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 6 FLGCTMTAFGPVIAMFLTTIMQDPVK 31
F GCT AFGP A+FL T+ DP++
Sbjct: 6 FFGCTFVAFGPAFALFLITVAGDPLR 31
>gi|395856055|ref|XP_003800458.1| PREDICTED: gamma-secretase subunit APH-1A [Otolemur garnettii]
Length = 265
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 90/167 (53%), Gaps = 6/167 (3%)
Query: 14 FGPVIAMFLTTIMQ----DPVKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFS 68
FG +++ L + + +KK+ GL +S D + + MAYVSGL +G IS FS
Sbjct: 74 FGAAVSVLLQEVFRFAYYKLLKKADEGLASLSEDGRSPISIRQMAYVSGLSFGIISGVFS 133
Query: 69 LLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASV 128
++N+L GPG +G+ G+S Y+ T++ T LLH FW +VFF E + + V
Sbjct: 134 VINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFDACERRRYWALGLV 193
Query: 129 VLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTM 175
V SH+ S T ++N S+L I T+ ++A+ GGS +++
Sbjct: 194 VGSHLLTSGLT-FLNPWYEASLLPIYAVTVSMGLWAFITSGGSLRSI 239
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 6 FLGCTMTAFGPVIAMFLTTIMQDPVK 31
F GCT AFGP A+FL T+ DP++
Sbjct: 6 FFGCTFVAFGPAFALFLITVAGDPLR 31
>gi|359321705|ref|XP_003639673.1| PREDICTED: gamma-secretase subunit APH-1A-like isoform 1 [Canis
lupus familiaris]
Length = 265
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 90/167 (53%), Gaps = 6/167 (3%)
Query: 14 FGPVIAMFLTTIMQ----DPVKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFS 68
FG +++ L + + +KK+ GL +S D + + MAYVSGL +G IS FS
Sbjct: 74 FGAAVSVLLQEVFRFAYYKLLKKADEGLASLSEDGRSPISIRQMAYVSGLSFGIISGVFS 133
Query: 69 LLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASV 128
++N+L GPG +G+ G+S Y+ T++ T LLH FW +VFF E + + V
Sbjct: 134 VINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFDACERRRYWALGLV 193
Query: 129 VLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTM 175
V SH+ S T ++N S+L I T+ ++A+ GGS +++
Sbjct: 194 VGSHLLTSGLT-FLNPWYEASLLPIYAVTVSMGLWAFITAGGSFRSI 239
Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 6 FLGCTMTAFGPVIAMFLTTIMQDPVK 31
F GCT AFGP A+FL T+ DP++
Sbjct: 6 FFGCTFVAFGPAFALFLITVAGDPLR 31
>gi|347300204|ref|NP_001231416.1| gamma-secretase subunit APH-1A [Sus scrofa]
Length = 247
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 90/167 (53%), Gaps = 6/167 (3%)
Query: 14 FGPVIAMFLTTIMQ----DPVKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFS 68
FG +++ L + + +KK+ GL +S D + + MAYVSGL +G IS FS
Sbjct: 74 FGAAVSVLLQEVFRFAYYKLLKKADEGLASLSEDGRSPISIRQMAYVSGLSFGIISGVFS 133
Query: 69 LLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASV 128
++N+L GPG +G+ G+S Y+ T++ T LLH FW +VFF E + + V
Sbjct: 134 VINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFDACERRRYWALGLV 193
Query: 129 VLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTM 175
V SH+ S T ++N S+L I T+ ++A+ GGS +++
Sbjct: 194 VGSHLLTSGLT-FLNPWYEASLLPIYAVTVSMGLWAFITAGGSFRSI 239
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 6 FLGCTMTAFGPVIAMFLTTIMQDPVK 31
F GCT AFGP A+FL T+ DP++
Sbjct: 6 FFGCTFVAFGPAFALFLITVAGDPLR 31
>gi|296237329|ref|XP_002763704.1| PREDICTED: gamma-secretase subunit APH-1B-like, partial [Callithrix
jacchus]
Length = 219
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 96/166 (57%), Gaps = 5/166 (3%)
Query: 14 FGPVIAMFLTTIMQ----DPVKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSL 69
FG ++++F+ + + +KK+ GL+ +S T + +AYVSGLG+G +S FS
Sbjct: 36 FGALVSVFIQEMFRFAYYRLLKKASEGLKSISPGETAPSMRLLAYVSGLGFGIMSGVFSF 95
Query: 70 LNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVV 129
+N L GPGT+G+ G+S F ++ T LLHVFW IVFF G E K ++ V+
Sbjct: 96 VNTLSDSLGPGTVGIHGDSPQFFLNSAFMTLVIILLHVFWGIVFFDGCERKKWYILLIVL 155
Query: 130 LSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTM 175
L+H+ +S+ T+ G+ VL I+ L ++A+ V GGS +++
Sbjct: 156 LTHLLVSAQTFISPHYGINLVLAFIILVL-MGIWAFFVAGGSCRSL 200
>gi|432114300|gb|ELK36228.1| Gamma-secretase subunit APH-1A [Myotis davidii]
Length = 247
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 82/147 (55%), Gaps = 2/147 (1%)
Query: 30 VKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGES 88
+KK+ GL +S D + + MAYVSGL +G IS FS++N+L GPG +G+ G+S
Sbjct: 94 LKKADEGLASLSEDGRSPISIRQMAYVSGLSFGIISGVFSVINILADALGPGVVGIHGDS 153
Query: 89 QYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLF 148
Y+ T++ T LLH FW +VFF E + + VV SH+ S T ++N
Sbjct: 154 PYYFLTSAFLTAAIILLHTFWGVVFFDACERRRYWTLGLVVGSHLLTSGLT-FLNPWYEA 212
Query: 149 SVLFIIVFTLFTAMFAYKVIGGSKKTM 175
S+L I T+ ++A+ GGS +++
Sbjct: 213 SLLPIYAVTVSMGLWAFITAGGSLRSI 239
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 6 FLGCTMTAFGPVIAMFLTTIMQDPVK 31
F GCT AFGP A+FL T+ DP++
Sbjct: 6 FFGCTFVAFGPAFALFLITVAGDPLR 31
>gi|363742824|ref|XP_428797.3| PREDICTED: gamma-secretase subunit APH-1A-like [Gallus gallus]
Length = 265
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 85/157 (54%), Gaps = 7/157 (4%)
Query: 30 VKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGES 88
+KK+ GL +S D + + MAYVSGL +G IS FS++N+L GPG +G+ G+S
Sbjct: 94 LKKADEGLATISEDGRSPISLKQMAYVSGLSFGIISGVFSVINILADSIGPGIVGIHGDS 153
Query: 89 QYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLF 148
Y+ T++ T LLH FW ++FF E + + VV+SH+ S T ++N +
Sbjct: 154 PYYFITSAFLTMAVVLLHTFWGVIFFDACEKRRYWCLGLVVISHLVTSGLT-FLNPWYVA 212
Query: 149 SVLFIIVFTLFTAMFAYKVIGGS-----KKTMCNGEN 180
S++ I + T ++A+ GGS K C E+
Sbjct: 213 SLVPIYIITFCMGIWAFFTAGGSFHNILKCLSCKQED 249
>gi|327288014|ref|XP_003228723.1| PREDICTED: gamma-secretase subunit APH-1A-like [Anolis
carolinensis]
Length = 265
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 84/147 (57%), Gaps = 2/147 (1%)
Query: 30 VKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGES 88
+KK+ GL +S D + + MAYVSGL +G IS FS++N+L GPGT+G+ G+S
Sbjct: 94 LKKADEGLVTISEDGRSPISIKQMAYVSGLSFGIISGVFSVINILADSIGPGTVGIHGDS 153
Query: 89 QYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLF 148
++ T++ T LLH FW +FF E + +A VV SH+ S T ++N
Sbjct: 154 PHYFITSAFLTMAIVLLHTFWGTIFFDACEKRCYWKLALVVASHLMTSGLT-FLNPCYEA 212
Query: 149 SVLFIIVFTLFTAMFAYKVIGGSKKTM 175
S++ I + TL T ++A+ GGS + +
Sbjct: 213 SLIPIFMITLSTGVWAFFTAGGSFRRI 239
>gi|326933472|ref|XP_003212827.1| PREDICTED: gamma-secretase subunit APH-1A-like [Meleagris
gallopavo]
Length = 310
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 85/157 (54%), Gaps = 7/157 (4%)
Query: 30 VKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGES 88
+KK+ GL +S D + + MAYVSGL +G IS FS++N+L GPG +G+ G+S
Sbjct: 139 LKKADEGLATISEDGRSPISLKQMAYVSGLSFGIISGVFSVINILADSIGPGIVGIHGDS 198
Query: 89 QYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLF 148
Y+ T++ T LLH FW ++FF E + + VV+SH+ S T ++N +
Sbjct: 199 PYYFITSAFLTMAVVLLHTFWGVIFFDACEKRRYWCLGLVVISHLVTSGLT-FLNPWYVA 257
Query: 149 SVLFIIVFTLFTAMFAYKVIGGS-----KKTMCNGEN 180
S++ I + T ++A+ GGS K C E+
Sbjct: 258 SLVPIYIITFCMGIWAFFTAGGSLHNILKCLSCKQED 294
>gi|74214575|dbj|BAE31132.1| unnamed protein product [Mus musculus]
Length = 247
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 89/167 (53%), Gaps = 6/167 (3%)
Query: 14 FGPVIAMFLTTIMQ----DPVKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFS 68
FG +++ L + + +KK+ GL +S D + + MAYVSGL +G IS FS
Sbjct: 74 FGAAVSVLLQEVFRFAYYKLLKKADEGLASLSEDGRSPISIRQMAYVSGLSFGIISGVFS 133
Query: 69 LLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASV 128
++N+L GPG +G+ G S Y+ T++ T LLH FW +VFF E + + V
Sbjct: 134 VINILADALGPGVVGIHGGSPYYFLTSAFLTAAIILLHTFWGVVFFDACERRRYWALGLV 193
Query: 129 VLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTM 175
V SH+ S T ++N S+L I T+ ++A+ GGS +++
Sbjct: 194 VGSHLLTSGLT-FLNPWYEASLLPIYAVTVSMGLWAFITAGGSLRSI 239
Score = 37.0 bits (84), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 6 FLGCTMTAFGPVIAMFLTTIMQDPVK 31
F GCT AFGP ++FL T+ DP++
Sbjct: 6 FFGCTFVAFGPAFSLFLITVAGDPLR 31
>gi|193786819|dbj|BAG52142.1| unnamed protein product [Homo sapiens]
Length = 247
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 90/167 (53%), Gaps = 6/167 (3%)
Query: 14 FGPVIAMFLTTIMQ----DPVKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFS 68
FG +++ L + + +KK+ GL +S D + + MAYVSGL +G IS FS
Sbjct: 74 FGAAVSVLLQEVFRFAYYKLLKKADEGLASLSEDGRSPISIRQMAYVSGLSFGIISGVFS 133
Query: 69 LLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASV 128
++++L GPG +G+ G+S Y+ T++ T LLH FW +VFF E + + V
Sbjct: 134 VISILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFDACERRRYWALGLV 193
Query: 129 VLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTM 175
V SH+ S T ++N S+L I T+ ++A+ GGS +++
Sbjct: 194 VGSHLLTSGLT-FLNPWYEASLLPIYAVTVSMGLWAFITAGGSLRSI 239
Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 6 FLGCTMTAFGPVIAMFLTTIMQDPVK 31
F GCT AFGP A+FL T+ DP++
Sbjct: 6 FCGCTFVAFGPAFALFLITVAGDPLR 31
>gi|240995046|ref|XP_002404570.1| anterior pharynx defective, putative [Ixodes scapularis]
gi|215491592|gb|EEC01233.1| anterior pharynx defective, putative [Ixodes scapularis]
Length = 255
Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 92/174 (52%), Gaps = 12/174 (6%)
Query: 13 AFGPVIAMFLTTIMQ----DPVKKSRGGLQYVSD-----RNTMDNTYAMAYVSGLGYGTI 63
AFG V ++F + ++K+ GL+ V++ + + ++YV+GLG+G +
Sbjct: 64 AFGVVFSVFFQEAFRYLFYKILRKAEVGLKKVTEVGADGASVSTSRTTLSYVAGLGFGIM 123
Query: 64 SAAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRT 123
S FSLLNVL +GPGT+GL G S YF T+++ T F LLH FW +V F ++
Sbjct: 124 SGVFSLLNVLADATGPGTVGLHGGSPYFFVTSALTTQAFVLLHTFWGVVSFHALDHGRWP 183
Query: 124 LVASVVLSHIFISSYTWYMNSSGLFSVLFIIVFTLF--TAMFAYKVIGGSKKTM 175
LV V+ H+ S+ T +N GL+ + ++ L + A+ GG ++
Sbjct: 184 LVGFVLACHLTASTLT-LLNPKGLYVASLVPIYLLLAISGALAFHAAGGRGHSL 236
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK 31
MT MEF GCT+ AFGP ++MF T+ +DP++
Sbjct: 1 MTLMEFFGCTLIAFGPALSMFAITVARDPIR 31
>gi|391339645|ref|XP_003744158.1| PREDICTED: gamma-secretase subunit Aph-1-like [Metaseiulus
occidentalis]
Length = 260
Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 77/130 (59%), Gaps = 1/130 (0%)
Query: 47 DNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLH 106
D+ +AYV+GLG+GT+S FSLLNVL ++ GP ++G G+S++F +S+ T F +L+
Sbjct: 116 DSRQLLAYVAGLGFGTMSGGFSLLNVLAEIGGPASVGYGGQSEWFVLVSSVTTSLFVILN 175
Query: 107 VFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWY-MNSSGLFSVLFIIVFTLFTAMFAY 165
W ++ F G + ++ L+ + SH S T + N + + S+L I V T+ A A+
Sbjct: 176 TCWGVILFHGYDTRDHRLIIGAIASHFVCSLMTLFNKNETYVASLLPISVMTVVCAGLAF 235
Query: 166 KVIGGSKKTM 175
+ GG + +
Sbjct: 236 HLAGGKYRKL 245
>gi|26347159|dbj|BAC37228.1| unnamed protein product [Mus musculus]
Length = 152
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 80/145 (55%), Gaps = 2/145 (1%)
Query: 32 KSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQY 90
K+ GL +S D + + MAYVSGL +G IS FS++N+L GPG +G+ G+S Y
Sbjct: 1 KADEGLASLSEDGRSPISIRQMAYVSGLSFGIISGVFSVINILADALGPGVVGIHGDSPY 60
Query: 91 FGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFSV 150
+ T++ T LLH FW +VFF E + + VV SH+ S T ++N S+
Sbjct: 61 YFLTSAFLTAAIILLHTFWGVVFFDACERRRYWALGLVVGSHLLTSGLT-FLNPWYEASL 119
Query: 151 LFIIVFTLFTAMFAYKVIGGSKKTM 175
L I T+ ++A+ GGS +++
Sbjct: 120 LPIYAVTVSMGLWAFITAGGSLRSI 144
>gi|118103670|ref|XP_001233302.1| PREDICTED: gamma-secretase subunit APH-1A [Gallus gallus]
Length = 256
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 86/147 (58%), Gaps = 2/147 (1%)
Query: 30 VKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGES 88
++K+ GL +S D + + MAYV+G+G+G +S AFS++N+L GPGT+G+ G+S
Sbjct: 94 LRKAIEGLVALSEDGCSPISIQQMAYVAGVGFGLMSGAFSMINLLADALGPGTVGIHGDS 153
Query: 89 QYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLF 148
Q + T++ T LH FW I+FF G E + + +VV+ H+ +S T + N +
Sbjct: 154 QLYFLTSAFMTMVLIFLHTFWGILFFHGCENRRWWEIVAVVVMHLAVSGST-FCNPLYVG 212
Query: 149 SVLFIIVFTLFTAMFAYKVIGGSKKTM 175
S++ V A++AY + GGS + +
Sbjct: 213 SLVPSYVLMAIAAVWAYMLSGGSVQNL 239
Score = 38.9 bits (89), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK 31
MT F GCT AFGP ++FL TI +DP++
Sbjct: 1 MTLAVFFGCTFIAFGPAFSLFLFTIARDPLR 31
>gi|395822283|ref|XP_003784450.1| PREDICTED: gamma-secretase subunit APH-1B isoform 1 [Otolemur
garnettii]
Length = 257
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 97/166 (58%), Gaps = 5/166 (3%)
Query: 14 FGPVIAMFLTTIMQ----DPVKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSL 69
FG ++++F+ + + +KK+ GL+ ++ T+ + +AYVSGLG+G +S FS
Sbjct: 74 FGVLVSVFIQELFRFAYYRLLKKANEGLKTINPGETVPSMQLLAYVSGLGFGIMSGVFSF 133
Query: 70 LNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVV 129
+N L GPGT+G+ G+S F ++ T LLHVFW IVFF G E KN ++ V+
Sbjct: 134 VNTLSDSLGPGTVGIHGDSPQFFLNSAFMTLVIILLHVFWGIVFFDGCEKKNWYILLIVL 193
Query: 130 LSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTM 175
L+H+ +S+ T+ G+ V I+ L ++A+ V GGS +++
Sbjct: 194 LTHLLVSAQTFINPYYGINLVSAYIIMVL-MGIWAFFVAGGSCRSL 238
>gi|307212332|gb|EFN88136.1| Gamma-secretase subunit Aph-1 [Harpegnathos saltator]
Length = 246
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 77/134 (57%), Gaps = 3/134 (2%)
Query: 44 NTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFS 103
+ +D +YV GLG+G +S AF+L+NVL GPGTMGL+ ++YF ++ T CF
Sbjct: 107 HVVDGRLEYSYVCGLGFGLMSGAFALVNVLADAVGPGTMGLRQGTEYFFMISAAITLCFI 166
Query: 104 LLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLF--SVLFIIVFTLFTA 161
LL+ FW ++FF ++ +N V VV SH+ +S T +N + S+L + + T
Sbjct: 167 LLNTFWGVIFFTALDCRNWGQVIWVVSSHLLVSCMT-LLNRYQAYAASILSAYIVLVITI 225
Query: 162 MFAYKVIGGSKKTM 175
+ A+++ G + +
Sbjct: 226 VIAFRLANGRMQNL 239
>gi|431895936|gb|ELK05354.1| Gamma-secretase subunit APH-1B [Pteropus alecto]
Length = 257
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 90/160 (56%), Gaps = 10/160 (6%)
Query: 30 VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
+KK+ GL+ ++ T + +AYVSGLG+G +S FS +N L GPGT+G+ G+S
Sbjct: 94 LKKANEGLKVINPDETAPSMRLLAYVSGLGFGIMSGVFSFVNTLSNSLGPGTVGIHGDSP 153
Query: 90 YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSG--L 147
F ++ T LLH+FW IVFF G E K ++ V+L+H+ +S+ T+ + G L
Sbjct: 154 QFFLNSAFMTLVIMLLHMFWGIVFFDGCEKKKWYVLLVVLLTHLLVSALTFISSHYGINL 213
Query: 148 FSVLFIIVFTLFTAMFAYKVIGGSKKT-----MCNGENLI 182
S I+V F ++A+ V GGS + +C E+ +
Sbjct: 214 VSTYMIMV---FMGIWAFFVAGGSYRNLKLCLLCQDEDFL 250
>gi|344293489|ref|XP_003418455.1| PREDICTED: gamma-secretase subunit APH-1B-like [Loxodonta africana]
Length = 272
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 84/146 (57%), Gaps = 1/146 (0%)
Query: 30 VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
+KK+ GL+ ++ T + +AYVSGLG+G +S FS +N L GPGT+G+ G+S
Sbjct: 109 LKKANEGLKAINPEETTPSMRLLAYVSGLGFGIMSGVFSFVNTLSDSLGPGTVGIHGDSP 168
Query: 90 YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFS 149
F ++ T LLH+FW IVFF G E K + VVL+H+ +S+ T+ G+
Sbjct: 169 QFFIHSAFMTLVIILLHIFWGIVFFDGCEKKRWCALLVVVLTHLLVSALTFLSPQYGINL 228
Query: 150 VLFIIVFTLFTAMFAYKVIGGSKKTM 175
VL + L ++A+ V GGS +T+
Sbjct: 229 VLSYTIMVL-MGIWAFFVAGGSCRTL 253
>gi|427782603|gb|JAA56753.1| Putative conserved membrane protein [Rhipicephalus pulchellus]
Length = 256
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 88/161 (54%), Gaps = 10/161 (6%)
Query: 30 VKKSRGGLQYVSDRNT-----MDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGL 84
++K+ GL+ V++ + ++YVSGLG+G +S FSLLNVL GPGT+GL
Sbjct: 85 LRKAELGLKKVTEVGADGAVVSSSRTTLSYVSGLGFGVMSGVFSLLNVLADAIGPGTVGL 144
Query: 85 KGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNS 144
G S F T+++ T F LLH FW +V F ++ LVA V ++H+ S T +N
Sbjct: 145 NGGSSCFFLTSALTTSAFVLLHTFWGVVSFHALDHGRWPLVAFVGIAHLVASCLT-LLNP 203
Query: 145 SGLF--SVLFIIVFTLFTAMFAYKVIGGSKKTMC--NGENL 181
+G + S++ I + L + + A+ GG + G++L
Sbjct: 204 AGYYVASLVPIYLLLLVSGVLAFHAAGGRVHALMRFKGQSL 244
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK 31
MT MEF+GC + FGP ++MF TI +DP++
Sbjct: 1 MTLMEFIGCALIGFGPALSMFAITIARDPIR 31
>gi|392350140|ref|XP_003750580.1| PREDICTED: gamma-secretase subunit APH-1B-like isoform 2 [Rattus
norvegicus]
Length = 257
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 81/146 (55%), Gaps = 1/146 (0%)
Query: 30 VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
+KK+ GL+ ++ T + +AYVSGLG+G +S FS +N L GPGT+G+ G+S
Sbjct: 94 LKKANEGLKSINPEETAPSMRLLAYVSGLGFGIMSGVFSFVNTLSNALGPGTVGIHGDSP 153
Query: 90 YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFS 149
F ++ T +LHVFW IVFF G E KN+ + VL + S ++ +
Sbjct: 154 QFFLNSAFMTLVIIMLHVFWGIVFFDGCE-KNKWYILLTVLLTHLLVSTQTLLSPHYEVN 212
Query: 150 VLFIIVFTLFTAMFAYKVIGGSKKTM 175
++ + + ++A+ V GGS++++
Sbjct: 213 LVTAYIIMVLMGIWAFCVAGGSRRSL 238
>gi|194387352|dbj|BAG60040.1| unnamed protein product [Homo sapiens]
Length = 131
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 71/124 (57%), Gaps = 1/124 (0%)
Query: 52 MAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSI 111
MAYVSGL +G IS FS++N+L GPG +G+ G+S Y+ T++ T LLH FW +
Sbjct: 1 MAYVSGLSFGIISGVFSVINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGV 60
Query: 112 VFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGS 171
VFF E + + VV SH+ S T ++N S+L I T+ ++A+ GGS
Sbjct: 61 VFFDACERRRYWALGLVVGSHLLTSGLT-FLNPWYEASLLPIYAVTVSMGLWAFITAGGS 119
Query: 172 KKTM 175
+++
Sbjct: 120 LRSI 123
>gi|114053317|ref|NP_001040555.1| gamma-secretase subunit APH-1B [Rattus norvegicus]
gi|110293151|gb|ABG66305.1| APH-1B' [Rattus norvegicus]
gi|183986583|gb|AAI66592.1| Anterior pharynx defective 1 homolog B (C. elegans) [Rattus
norvegicus]
Length = 257
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 81/146 (55%), Gaps = 1/146 (0%)
Query: 30 VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
+KK+ GL+ ++ T + +AYVSGLG+G +S FS +N L GPGT+G+ G+S
Sbjct: 94 LKKASEGLKSINPEETAPSMRLLAYVSGLGFGIMSGVFSFVNTLSNALGPGTVGIHGDSP 153
Query: 90 YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFS 149
F ++ T +LHVFW IVFF G E KN+ + VL + S ++ +
Sbjct: 154 QFFLNSAFMTLVIIMLHVFWGIVFFDGCE-KNKWYILLTVLLTHLLVSTQTLLSPHYEVN 212
Query: 150 VLFIIVFTLFTAMFAYKVIGGSKKTM 175
++ + + ++A+ V GGS++++
Sbjct: 213 LVTAYIIMVLMGIWAFCVAGGSRRSL 238
Score = 36.6 bits (83), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK 31
MT F GC AFGP +A++L TI DP++
Sbjct: 1 MTAPVFFGCAFIAFGPALALYLFTIATDPLR 31
>gi|71051695|gb|AAH98711.1| Aph1b protein [Rattus norvegicus]
Length = 256
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 81/146 (55%), Gaps = 1/146 (0%)
Query: 30 VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
+KK+ GL+ ++ T + +AYVSGLG+G +S FS +N L GPGT+G+ G+S
Sbjct: 93 LKKASEGLKSINPEETAPSMRLLAYVSGLGFGIMSGVFSFVNTLSNALGPGTVGIHGDSP 152
Query: 90 YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFS 149
F ++ T +LHVFW IVFF G E KN+ + VL + S ++ +
Sbjct: 153 QFFLNSAFMTLVIIMLHVFWGIVFFDGCE-KNKWYILLTVLLTHLLVSTQTLLSPHYEVN 211
Query: 150 VLFIIVFTLFTAMFAYKVIGGSKKTM 175
++ + + ++A+ V GGS++++
Sbjct: 212 LVTAYIIMVLMGIWAFCVAGGSRRSL 237
>gi|403298217|ref|XP_003939927.1| PREDICTED: gamma-secretase subunit APH-1B isoform 1 [Saimiri
boliviensis boliviensis]
Length = 257
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 95/166 (57%), Gaps = 5/166 (3%)
Query: 14 FGPVIAMFLTTIMQ----DPVKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSL 69
FG ++++F+ + + +KK+ GL+ ++ T + +AYVSGLG+G +S FS
Sbjct: 74 FGALVSVFIQEMFRFAYYRLLKKASEGLKSINPGETAPSMRLLAYVSGLGFGIMSGVFSF 133
Query: 70 LNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVV 129
+N L GPGT+G+ G+S F ++ T LLHVFW IVFF G E K ++ V+
Sbjct: 134 VNTLSDSLGPGTVGIHGDSPQFFLNSAFMTLVIILLHVFWGIVFFDGCERKKWYILLIVL 193
Query: 130 LSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTM 175
L+H+ +S+ T+ G+ V I+ L ++A+ V GGS +++
Sbjct: 194 LTHLLVSAQTFISPHYGINLVSAFIILVL-MGIWAFFVAGGSCRSL 238
>gi|221121638|ref|XP_002167184.1| PREDICTED: gamma-secretase subunit Aph-1b-like [Hydra
magnipapillata]
Length = 243
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 88/169 (52%), Gaps = 11/169 (6%)
Query: 17 VIAMFLTTIMQD--------PVKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFS 68
V +M + I Q+ ++++ GL ++ T YVSGLGYG +S F+
Sbjct: 66 VFSMIFSVIFQEMFRLFLWMVLRRAEEGLIVMNGSYTPLRKIRFHYVSGLGYGLMSGLFA 125
Query: 69 LLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASV 128
++N+L ++GPGT+GL G++ +F ++ T CF LLH W I+FF ++ K V V
Sbjct: 126 MVNILADITGPGTVGLFGDNNHFVIVSAFLTNCFVLLHTCWGILFFDAMDAKKWKTVLFV 185
Query: 129 VLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAM--FAYKVIGGSKKTM 175
SH+ IS T +N + I + L M ++++V+GGS +
Sbjct: 186 CTSHLAISLLT-LLNKHYTYWPSLITGYILLVVMGIWSFRVVGGSSNNL 233
>gi|449275458|gb|EMC84321.1| Gamma-secretase subunit APH-1A, partial [Columba livia]
Length = 231
Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 85/147 (57%), Gaps = 2/147 (1%)
Query: 30 VKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGES 88
++K+ GL +S D + + MAYV+G+G+G +S AFS++N+L GPGT+G+ G+S
Sbjct: 79 LRKAIEGLVALSEDGCSPISIQQMAYVAGVGFGLMSGAFSMINLLADALGPGTVGIYGDS 138
Query: 89 QYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLF 148
Q + T++ T LH FW I+FF G E + + +VV+ H+ +S T + N +
Sbjct: 139 QLYFLTSAFMTMVLIFLHTFWGILFFHGCEHRRWWEITAVVVMHLAVSGST-FFNPLYVG 197
Query: 149 SVLFIIVFTLFTAMFAYKVIGGSKKTM 175
S++ + A +AY + GGS + +
Sbjct: 198 SLVPSYLLMAAAATWAYMLSGGSAQNL 224
>gi|354474334|ref|XP_003499386.1| PREDICTED: gamma-secretase subunit APH-1B-like [Cricetulus griseus]
Length = 257
Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 87/146 (59%), Gaps = 1/146 (0%)
Query: 30 VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
+KK+ GL+ ++ T + +AYVSGLG+G +S FS +N L GPGT+G+ G+S
Sbjct: 94 LKKASEGLKSINPEETTPSMRLLAYVSGLGFGIMSGVFSFVNTLSDSLGPGTVGIHGDSP 153
Query: 90 YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFS 149
F ++ T LLHVFW IVFF G E K ++ V+L+H+ +S+ T +++ +
Sbjct: 154 QFFLNSAFMTLVIILLHVFWGIVFFDGCEKKKWYILLIVLLTHLLVSTQT-FLSPYYELN 212
Query: 150 VLFIIVFTLFTAMFAYKVIGGSKKTM 175
++ + +F ++A+ V GGS +++
Sbjct: 213 LVSAYIIMVFMGIWAFFVAGGSCRSL 238
Score = 35.8 bits (81), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK 31
MT F GC AFGP +A+++ TI DP++
Sbjct: 1 MTAAVFFGCAFIAFGPALALYVFTIATDPLR 31
>gi|449514237|ref|XP_002191104.2| PREDICTED: uncharacterized protein LOC100229050 [Taeniopygia
guttata]
Length = 473
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 74/124 (59%), Gaps = 1/124 (0%)
Query: 52 MAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSI 111
MAYV+G+G+G +S AFS++N+L GPGT+G+ G+SQ + T++ T LH FW I
Sbjct: 334 MAYVAGVGFGLMSGAFSMINLLADALGPGTVGIHGDSQLYFLTSAFMTMVLIFLHTFWGI 393
Query: 112 VFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGS 171
+FF G E + + +VV+ H+ +S + + N + S++ + A +AY + GGS
Sbjct: 394 LFFHGCEHRRWWEITAVVIMHLTVSGLS-FCNPLYVGSLVPSYLLMAAAATWAYLLSGGS 452
Query: 172 KKTM 175
+ +
Sbjct: 453 AQNL 456
>gi|67970371|dbj|BAE01528.1| unnamed protein product [Macaca fascicularis]
Length = 257
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 85/146 (58%), Gaps = 1/146 (0%)
Query: 30 VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
+KK+ GL+ ++ T + +AYVSGLG+G +S FS +N L GPGT+G+ G+S
Sbjct: 94 LKKASEGLKSINPGETAPSMRLLAYVSGLGFGIMSGVFSFVNTLSDSLGPGTVGIHGDSP 153
Query: 90 YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFS 149
F ++ T LLHVFW IVFF G E K L+ V+L+H+ +S+ T+ + G+
Sbjct: 154 QFFLYSAFMTLVIILLHVFWGIVFFNGCEKKKWCLLLIVLLTHLLVSAQTFISSYYGINL 213
Query: 150 VLFIIVFTLFTAMFAYKVIGGSKKTM 175
V I+ L +A+ V GGS +++
Sbjct: 214 VSAFIILVL-MGTWAFFVAGGSCRSL 238
Score = 36.2 bits (82), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK 31
MT F GC AFGP +A+++ TI DP++
Sbjct: 1 MTAAVFFGCAFIAFGPALALYVFTIATDPLR 31
>gi|402874515|ref|XP_003901081.1| PREDICTED: gamma-secretase subunit APH-1B [Papio anubis]
gi|380816962|gb|AFE80355.1| gamma-secretase subunit APH-1B isoform 1 [Macaca mulatta]
gi|383413141|gb|AFH29784.1| gamma-secretase subunit APH-1B isoform 1 [Macaca mulatta]
gi|384949700|gb|AFI38455.1| gamma-secretase subunit APH-1B isoform 1 [Macaca mulatta]
Length = 257
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 85/146 (58%), Gaps = 1/146 (0%)
Query: 30 VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
+KK+ GL+ ++ T + +AYVSGLG+G +S FS +N L GPGT+G+ G+S
Sbjct: 94 LKKASEGLKSINPGETAPSMRLLAYVSGLGFGIMSGVFSFVNTLSDSLGPGTVGIHGDSP 153
Query: 90 YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFS 149
F ++ T LLHVFW IVFF G E K L+ V+L+H+ +S+ T+ + G+
Sbjct: 154 QFFLYSAFMTLVIILLHVFWGIVFFDGCEKKKWCLLLIVLLTHLLVSAQTFISSYYGINL 213
Query: 150 VLFIIVFTLFTAMFAYKVIGGSKKTM 175
V I+ L +A+ V GGS +++
Sbjct: 214 VSAFIILVL-MGTWAFFVAGGSCRSL 238
Score = 35.8 bits (81), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK 31
MT F GC AFGP +A+++ TI DP++
Sbjct: 1 MTAAVFFGCAFIAFGPALALYVFTIATDPLR 31
>gi|355778097|gb|EHH63133.1| Gamma-secretase subunit APH-1B, partial [Macaca fascicularis]
Length = 252
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 85/146 (58%), Gaps = 1/146 (0%)
Query: 30 VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
+KK+ GL+ ++ T + +AYVSGLG+G +S FS +N L GPGT+G+ G+S
Sbjct: 89 LKKASEGLKSINPGETAPSMRLLAYVSGLGFGIMSGVFSFVNTLSDSLGPGTVGIHGDSP 148
Query: 90 YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFS 149
F ++ T LLHVFW IVFF G E K L+ V+L+H+ +S+ T+ + G+
Sbjct: 149 QFFLYSAFMTLVIILLHVFWGIVFFDGCEKKKWCLLLIVLLTHLLVSAQTFISSYYGINL 208
Query: 150 VLFIIVFTLFTAMFAYKVIGGSKKTM 175
V I+ L +A+ V GGS +++
Sbjct: 209 VSAFIILVL-MGTWAFFVAGGSCRSL 233
>gi|109081433|ref|XP_001105067.1| PREDICTED: gamma-secretase subunit APH-1B [Macaca mulatta]
Length = 257
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 85/146 (58%), Gaps = 1/146 (0%)
Query: 30 VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
+KK+ GL+ ++ T + +AYVSGLG+G +S FS +N L GPGT+G+ G+S
Sbjct: 94 LKKASEGLKSINPGETAPSMRLLAYVSGLGFGIMSGVFSFVNTLSDSLGPGTVGIHGDSP 153
Query: 90 YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFS 149
F ++ T LLHVFW IVFF G E K L+ V+L+H+ +S+ T+ + G+
Sbjct: 154 QFFLYSAFMTLVIILLHVFWGIVFFDGCEKKKWCLLLIVLLTHLLVSAQTFISSYYGINL 213
Query: 150 VLFIIVFTLFTAMFAYKVIGGSKKTM 175
V I+ L +A+ V GGS +++
Sbjct: 214 VSAFIILVL-MGTWAFFVAGGSCRSL 238
Score = 35.8 bits (81), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK 31
MT F GC AFGP +A+++ TI DP++
Sbjct: 1 MTAAVFFGCAFIAFGPALALYVFTIATDPLR 31
>gi|74000849|ref|XP_544714.2| PREDICTED: gamma-secretase subunit APH-1B [Canis lupus familiaris]
Length = 346
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 85/146 (58%), Gaps = 1/146 (0%)
Query: 30 VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
+KK+ GL+ ++ T + +AYVSGLG+G +S F+ +N L GPGT+G+ G+S
Sbjct: 183 LKKASEGLKSINPDETTPSMRLLAYVSGLGFGIMSGVFAFVNTLSDSLGPGTVGIHGDSP 242
Query: 90 YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFS 149
F ++ T LLHVFW I+FF G E K + + V+L+H+ +S+ T+ G+ +
Sbjct: 243 QFFLNSAFMTLVIILLHVFWGIIFFDGCEKKKWSALLIVLLTHLLVSALTFISPHYGI-N 301
Query: 150 VLFIIVFTLFTAMFAYKVIGGSKKTM 175
++ + L ++A+ V GGS + +
Sbjct: 302 LVSTYMIMLLMGIWAFFVAGGSCRNL 327
>gi|293349302|ref|XP_002727094.1| PREDICTED: gamma-secretase subunit APH-1B-like, partial [Rattus
norvegicus]
Length = 162
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 79/144 (54%), Gaps = 1/144 (0%)
Query: 32 KSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQYF 91
K+ GL+ ++ T + +AYVSGLG+G +S FS +N L GPGT+G+ G+S F
Sbjct: 1 KANEGLKSINPEETAPSMRLLAYVSGLGFGIMSGVFSFVNTLSNALGPGTVGIHGDSPQF 60
Query: 92 GFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFSVL 151
++ T +LHVFW IVFF G E KN+ + VL + S ++ +++
Sbjct: 61 FLNSAFMTLVIIMLHVFWGIVFFDGCE-KNKWYILLTVLLTHLLVSTQTLLSPHYEVNLV 119
Query: 152 FIIVFTLFTAMFAYKVIGGSKKTM 175
+ + ++A+ V GGS++++
Sbjct: 120 TAYIIMVLMGIWAFCVAGGSRRSL 143
>gi|426379397|ref|XP_004056384.1| PREDICTED: gamma-secretase subunit APH-1B [Gorilla gorilla gorilla]
Length = 275
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 86/164 (52%), Gaps = 18/164 (10%)
Query: 30 VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
+KK+ GL+ ++ T + +AYVSGLG+G +S FS +N L GPGT+G+ G+S
Sbjct: 112 LKKASEGLKSINPGETAPSMRLLAYVSGLGFGIMSGVFSFVNTLSDSLGPGTVGIHGDSP 171
Query: 90 YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKN------RTLVASVVLSHIFISSYTWYMN 143
F ++ T LLHVFW IVFF G E K L +V + FISSY + +N
Sbjct: 172 QFFLYSAFMTLVIILLHVFWGIVFFDGCEKKKWGILLIVLLTHLLVSAQTFISSY-YGIN 230
Query: 144 SSGLFSVLFIIVFTLFTAMFAYKVIGGSKKT-----MCNGENLI 182
+ F +L +F +A+ GGS ++ +C +N +
Sbjct: 231 LASAFIIL------VFMGTWAFLAAGGSCRSLKLCLLCQDKNFL 268
>gi|392350164|ref|XP_003750585.1| PREDICTED: gamma-secretase subunit APH-1B-like, partial [Rattus
norvegicus]
gi|149028912|gb|EDL84253.1| rCG56634, isoform CRA_a [Rattus norvegicus]
Length = 202
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 30 VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
+KK+ GL+ ++ T + +AYVSGLG+G +S FS +N L GPGT+G+ G+S
Sbjct: 94 LKKASEGLKSINPEETAPSMRLLAYVSGLGFGIMSGVFSFVNTLSNALGPGTVGIHGDSP 153
Query: 90 YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNR 122
F ++ T +LHVFW IVFF G E KN+
Sbjct: 154 QFFLNSAFMTLVIIMLHVFWGIVFFDGCE-KNK 185
Score = 36.6 bits (83), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK 31
MT F GC AFGP +A++L TI DP++
Sbjct: 1 MTAPVFFGCAFIAFGPALALYLFTIATDPLR 31
>gi|355692781|gb|EHH27384.1| Gamma-secretase subunit APH-1B, partial [Macaca mulatta]
Length = 223
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 85/146 (58%), Gaps = 1/146 (0%)
Query: 30 VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
+KK+ GL+ ++ T + +AYVSGLG+G +S FS +N L GPGT+G+ G+S
Sbjct: 60 LKKASEGLKSINPGETAPSMRLLAYVSGLGFGIMSGVFSFVNTLSDSLGPGTVGIHGDSP 119
Query: 90 YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFS 149
F ++ T LLHVFW IVFF G E K L+ V+L+H+ +S+ T+ + G+
Sbjct: 120 QFFLYSAFMTLVIILLHVFWGIVFFDGCEKKKWCLLLIVLLTHLLVSAQTFISSYYGINL 179
Query: 150 VLFIIVFTLFTAMFAYKVIGGSKKTM 175
V I+ L +A+ V GGS +++
Sbjct: 180 VSAFIILVL-MGTWAFFVAGGSCRSL 204
>gi|417397944|gb|JAA46005.1| Putative conserved plasma membrane protein [Desmodus rotundus]
Length = 257
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 84/146 (57%), Gaps = 1/146 (0%)
Query: 30 VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
+KK+ GL+ V+ + +AYVSGL +G +S FS +N L GPGT+G+ G+S
Sbjct: 94 LKKANEGLKIVNPDEPAPSMRLLAYVSGLDFGIMSGVFSFVNTLSDSLGPGTVGIHGDSP 153
Query: 90 YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFS 149
F ++ T LLH+FW IVFF G E KN + V+L+H+ +S+ T +++ S
Sbjct: 154 QFFLNSAFMTLVIILLHMFWGIVFFDGCEKKNWYALLVVLLTHLLVSALT-FISPHYAIS 212
Query: 150 VLFIIVFTLFTAMFAYKVIGGSKKTM 175
++ V + ++A+ V GGS +++
Sbjct: 213 LVSAYVIMVLMGVWAFSVAGGSCRSL 238
>gi|50726954|ref|NP_112591.2| gamma-secretase subunit APH-1B isoform 1 [Homo sapiens]
gi|114657498|ref|XP_523094.2| PREDICTED: uncharacterized protein LOC467700 isoform 2 [Pan
troglodytes]
gi|397515496|ref|XP_003827986.1| PREDICTED: gamma-secretase subunit APH-1B [Pan paniscus]
gi|61252592|sp|Q8WW43.3|APH1B_HUMAN RecName: Full=Gamma-secretase subunit APH-1B; Short=APH-1b;
AltName: Full=Aph-1beta; AltName:
Full=Presenilin-stabilization factor-like
gi|18088649|gb|AAH20905.1| Anterior pharynx defective 1 homolog B (C. elegans) [Homo sapiens]
gi|119598051|gb|EAW77645.1| anterior pharynx defective 1 homolog B (C. elegans), isoform CRA_b
[Homo sapiens]
gi|123980996|gb|ABM82327.1| anterior pharynx defective 1 homolog B (C. elegans) [synthetic
construct]
gi|158255844|dbj|BAF83893.1| unnamed protein product [Homo sapiens]
gi|410209798|gb|JAA02118.1| anterior pharynx defective 1 homolog B [Pan troglodytes]
gi|410248856|gb|JAA12395.1| anterior pharynx defective 1 homolog B [Pan troglodytes]
gi|410289002|gb|JAA23101.1| anterior pharynx defective 1 homolog B [Pan troglodytes]
gi|410337357|gb|JAA37625.1| anterior pharynx defective 1 homolog B [Pan troglodytes]
Length = 257
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 88/164 (53%), Gaps = 18/164 (10%)
Query: 30 VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
+KK+ GL+ ++ T + +AYVSGLG+G +S FS +N L GPGT+G+ G+S
Sbjct: 94 LKKASEGLKSINPGETAPSMRLLAYVSGLGFGIMSGVFSFVNTLSDSLGPGTVGIHGDSP 153
Query: 90 YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVL------SHIFISSYTWYMN 143
F ++ T LLHVFW IVFF G E K ++ V+L + FISSY + +N
Sbjct: 154 QFFLYSAFMTLVIILLHVFWGIVFFDGCEKKKWGILLIVLLTHLLVSAQTFISSY-YGIN 212
Query: 144 SSGLFSVLFIIVFTLFTAMFAYKVIGGSKKT-----MCNGENLI 182
+ F +L ++ +A+ GGS ++ +C +N +
Sbjct: 213 LASAFIILVLM------GTWAFLAAGGSCRSLKLCLLCQDKNFL 250
>gi|24637564|gb|AAN63817.1|AF508794_1 presenilin stabilization factor-like protein [Homo sapiens]
gi|12052866|emb|CAB66606.1| hypothetical protein [Homo sapiens]
gi|117644216|emb|CAL37602.1| hypothetical protein [synthetic construct]
gi|117644522|emb|CAL37756.1| hypothetical protein [synthetic construct]
gi|261859408|dbj|BAI46226.1| anterior pharynx defective 1 homolog B [synthetic construct]
Length = 257
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 88/164 (53%), Gaps = 18/164 (10%)
Query: 30 VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
+KK+ GL+ ++ T + +AYVSGLG+G +S FS +N L GPGT+G+ G+S
Sbjct: 94 LKKASEGLKSINPGETAPSMRLLAYVSGLGFGIMSGVFSFVNTLSDSLGPGTVGIHGDSP 153
Query: 90 YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVL------SHIFISSYTWYMN 143
F ++ T LLHVFW IVFF G E K ++ V+L + FISSY + +N
Sbjct: 154 QFFLYSAFMTLVIILLHVFWGIVFFDGCEKKKWGILLIVLLTHLLVSAQTFISSY-YGIN 212
Query: 144 SSGLFSVLFIIVFTLFTAMFAYKVIGGSKKT-----MCNGENLI 182
+ F +L ++ +A+ GGS ++ +C +N +
Sbjct: 213 LASAFIILVLM------GTWAFLAAGGSCRSLKLCLLCQDKNFL 250
>gi|301756857|ref|XP_002914313.1| PREDICTED: gamma-secretase subunit APH-1B-like, partial [Ailuropoda
melanoleuca]
Length = 259
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 86/146 (58%), Gaps = 1/146 (0%)
Query: 30 VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
+KK+ GL+ ++ T + +AYVSGLG+G +S F+ +N L GPGT+G+ G+S
Sbjct: 96 LKKASEGLKSINPDETAPSMRLLAYVSGLGFGIMSGVFAFVNTLSDSLGPGTVGIHGDSP 155
Query: 90 YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFS 149
F ++ T LLHVFW I+FF G E K + + V+LSH+ +S+ T+ + G+
Sbjct: 156 QFFLNSAFMTLVIILLHVFWGIIFFDGCEKKKWSALLVVLLSHLLVSALTFISSHYGINL 215
Query: 150 VLFIIVFTLFTAMFAYKVIGGSKKTM 175
V IV L ++A+ V GGS +++
Sbjct: 216 VSTYIVMVL-MGIWAFFVAGGSCRSL 240
>gi|281347306|gb|EFB22890.1| hypothetical protein PANDA_002151 [Ailuropoda melanoleuca]
Length = 251
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 86/146 (58%), Gaps = 1/146 (0%)
Query: 30 VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
+KK+ GL+ ++ T + +AYVSGLG+G +S F+ +N L GPGT+G+ G+S
Sbjct: 88 LKKASEGLKSINPDETAPSMRLLAYVSGLGFGIMSGVFAFVNTLSDSLGPGTVGIHGDSP 147
Query: 90 YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFS 149
F ++ T LLHVFW I+FF G E K + + V+LSH+ +S+ T+ + G+
Sbjct: 148 QFFLNSAFMTLVIILLHVFWGIIFFDGCEKKKWSALLVVLLSHLLVSALTFISSHYGINL 207
Query: 150 VLFIIVFTLFTAMFAYKVIGGSKKTM 175
V IV L ++A+ V GGS +++
Sbjct: 208 VSTYIVMVL-MGIWAFFVAGGSCRSL 232
>gi|37182518|gb|AAQ89061.1| TAAV688 [Homo sapiens]
Length = 257
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 88/164 (53%), Gaps = 18/164 (10%)
Query: 30 VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
+KK+ GL+ ++ T + +AYVSGLG+G +S FS +N L GPGT+G+ G+S
Sbjct: 94 LKKASEGLKSINPGETAPSMRLLAYVSGLGFGIMSGVFSFVNTLSDSLGPGTVGIHGDSP 153
Query: 90 YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVL------SHIFISSYTWYMN 143
F ++ T LLHVFW IVFF G E K ++ V+L + FISSY + +N
Sbjct: 154 QFFLYSAFMTLVIILLHVFWGIVFFDGCEKKKWGILLIVLLTHLLVSAQTFISSY-YGIN 212
Query: 144 SSGLFSVLFIIVFTLFTAMFAYKVIGGSKKT-----MCNGENLI 182
+ F +L ++ +A+ GGS ++ +C +N +
Sbjct: 213 LASAFIILVLM------GTWAFLAAGGSCRSLKLCLLCQDKNFL 250
>gi|344251053|gb|EGW07157.1| Gamma-secretase subunit APH-1B [Cricetulus griseus]
Length = 196
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 72/147 (48%), Gaps = 26/147 (17%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVKKS-------------------RGGLQYVS 41
MT F GC AFGP +A+++ TI DP++ + R ++ ++
Sbjct: 1 MTAAVFFGCAFIAFGPALALYVFTIATDPLRVTFLIAGAFFWLVSLLLPSVFRYLVRIIA 60
Query: 42 D-RNTMDNTYAMAY------VSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQYFGFT 94
+ R+ Y + + SGLG+G +S FS +N L GPGT+G+ G+S F
Sbjct: 61 ENRDGPIQKYLLIFRVLLSVFSGLGFGIMSGVFSFVNTLSDSLGPGTVGIHGDSPQFFLN 120
Query: 95 TSIFTCCFSLLHVFWSIVFFRGVEIKN 121
++ T LLHVFW IVFF G E K
Sbjct: 121 SAFMTLVIILLHVFWGIVFFDGCEKKK 147
>gi|344251052|gb|EGW07156.1| Gamma-secretase subunit APH-1B [Cricetulus griseus]
Length = 219
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 101/201 (50%), Gaps = 27/201 (13%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVKKS---RGGLQYVSD-----------RNTM 46
MT F GC AFGP +A+++ TI DP++ + G ++ R
Sbjct: 1 MTAAVFFGCAFIAFGPALALYVFTIATDPLRVTFLIAGAFFWLVSLLLSSVFWYLVRIIT 60
Query: 47 DNT------------YAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQYFGFT 94
DN ++ SGLG+G +S FS +N L GPGT+G+ G+S F
Sbjct: 61 DNKDGPIQKYLLIFGVLLSVFSGLGFGIMSGVFSFVNTLSDSLGPGTVGIHGDSPQFFLN 120
Query: 95 TSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFSVLFII 154
++ T LLHVFW IVFF G E K ++ V+L+H+ +S+ T +++ +++
Sbjct: 121 SAFMTLVIILLHVFWGIVFFDGCEKKKWYILLIVLLTHLLVSTQT-FLSPYYELNLVSAY 179
Query: 155 VFTLFTAMFAYKVIGGSKKTM 175
+ +F ++A+ V GGS +++
Sbjct: 180 IIMVFMGIWAFFVAGGSCRSL 200
>gi|320162875|gb|EFW39774.1| hypothetical protein CAOG_00299 [Capsaspora owczarzaki ATCC 30864]
Length = 235
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 78/143 (54%), Gaps = 17/143 (11%)
Query: 17 VIAMFLTTIMQDP--------VKKSRGGLQYVSD-RNTMDNTYAMAYVSGLGYGTISAAF 67
V A+FL +Q+ +K++ GL V+D N+ + +AYVSGLG+G +SA
Sbjct: 64 VWAIFLAVALQEVGRWATYRVLKRAEPGLLKVADFANSRLVHHRLAYVSGLGFGIMSALI 123
Query: 68 SLLNVLDQVSGPGTM---GLKGESQYFGFTTSIFT-CCFSLLHVFWSIVFFRGVEIKNRT 123
VL +GPG + G G S Y S FT CCFSLLHVFW +VF G+ ++
Sbjct: 124 QFNPVLSVATGPGMLPSPGCTGNSYYL---VSAFTICCFSLLHVFWHVVFSHGMNTNSKV 180
Query: 124 LVASVVLSHIFISSYTWYMNSSG 146
LVA V ++H+ S T +N SG
Sbjct: 181 LVAIVPIAHLAASLLT-LINESG 202
>gi|148529819|gb|ABQ82142.1| APH1B, partial [Equus caballus]
Length = 203
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 65/112 (58%), Gaps = 4/112 (3%)
Query: 14 FGPVIAMFLTTIMQ----DPVKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSL 69
FG ++++F+ + + +KK+ GL+ +S T + +AYVSGLG+G +S FS
Sbjct: 20 FGVLVSVFIQEVFRFGYYKILKKASEGLKNISADETALSMRLLAYVSGLGFGIMSGVFSF 79
Query: 70 LNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKN 121
+N L GPGT+G+ G+S F ++ T +LH+FW IVFF G E K
Sbjct: 80 VNTLSDSLGPGTVGIHGDSPQFFLVSAFMTLVIIMLHLFWGIVFFDGCEKKK 131
>gi|338717431|ref|XP_001918159.2| PREDICTED: gamma-secretase subunit APH-1B [Equus caballus]
Length = 259
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 65/112 (58%), Gaps = 4/112 (3%)
Query: 14 FGPVIAMFLTTIMQ----DPVKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSL 69
FG ++++F+ + + +KK+ GL+ +S T + +AYVSGLG+G +S FS
Sbjct: 76 FGVLVSVFIQEVFRFGYYKILKKASEGLKNISADETALSMRLLAYVSGLGFGIMSGVFSF 135
Query: 70 LNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKN 121
+N L GPGT+G+ G+S F ++ T +LH+FW IVFF G E K
Sbjct: 136 VNTLSDSLGPGTVGIHGDSPQFFLVSAFMTLVIIMLHLFWGIVFFDGCEKKK 187
>gi|332235871|ref|XP_003267128.1| PREDICTED: gamma-secretase subunit APH-1B isoform 1 [Nomascus
leucogenys]
Length = 257
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 86/146 (58%), Gaps = 1/146 (0%)
Query: 30 VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
+KK+ GL+ ++ T + +AYVSGLG+G +S FS +N L GPGT+G+ G+S
Sbjct: 94 LKKASEGLKSINPGETAPSMRLLAYVSGLGFGIMSGVFSFVNTLSDSLGPGTVGIHGDSP 153
Query: 90 YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFS 149
F ++ T LLHVFW I+FF G E K ++ V+L+H+ +S+ T+ + G+
Sbjct: 154 QFFLYSAFMTLVIILLHVFWGIIFFDGCEKKKWGILLIVLLTHLLVSAQTFISSYYGINL 213
Query: 150 VLFIIVFTLFTAMFAYKVIGGSKKTM 175
V I+ L + +A+ V GGS +++
Sbjct: 214 VSAFIILVLMGS-WAFFVAGGSCRSL 238
>gi|426233176|ref|XP_004010593.1| PREDICTED: gamma-secretase subunit APH-1B isoform 1 [Ovis aries]
Length = 257
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 83/146 (56%), Gaps = 1/146 (0%)
Query: 30 VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
+KK+ GL+ ++ + +AYVSGLG+G +S FS +N L GPGT+G+ G+
Sbjct: 94 LKKASEGLKIINPYEKAPSMRLLAYVSGLGFGIMSGVFSFVNTLSDSLGPGTVGIHGDPP 153
Query: 90 YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFS 149
F ++ T +LLHVFW IVFF G E K + V+LSH+ +S+ T GL
Sbjct: 154 QFFLNSAFMTLVITLLHVFWGIVFFDGCEKKKWYTLLVVLLSHLLVSALTLISPHYGLNL 213
Query: 150 VLFIIVFTLFTAMFAYKVIGGSKKTM 175
VL ++ L ++A+ V GGS +++
Sbjct: 214 VLAYVIMVL-MGVWAFFVSGGSCRSL 238
>gi|355668899|gb|AER94342.1| anterior pharynx defective 1-like protein B [Mustela putorius furo]
Length = 218
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 85/148 (57%), Gaps = 5/148 (3%)
Query: 30 VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
+KK+ GL+ ++ T + +AYVSGLG+G +S F+ +N L GPGT+G+ G+S
Sbjct: 56 LKKASEGLKTINPDETAPSMRLLAYVSGLGFGIMSGVFAFVNTLSDSLGPGTVGIHGDSP 115
Query: 90 YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSG--L 147
F ++ T LLHVFW I+FF G E K + + V+L+H+ +S+ T+ G L
Sbjct: 116 QFFLNSAFMTLVIILLHVFWGIIFFDGCEKKKWSSLLVVLLTHLLVSALTFISPHYGINL 175
Query: 148 FSVLFIIVFTLFTAMFAYKVIGGSKKTM 175
S I+V ++A+ V GGS +++
Sbjct: 176 VSTYLIMV---LMGIWAFFVAGGSCRSL 200
>gi|197099458|ref|NP_001125030.1| gamma-secretase subunit APH-1B [Pongo abelii]
gi|71152230|sp|Q5RDM3.1|APH1B_PONAB RecName: Full=Gamma-secretase subunit APH-1B; Short=APH-1b;
AltName: Full=Aph-1beta
gi|55726744|emb|CAH90134.1| hypothetical protein [Pongo abelii]
Length = 257
Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 55/92 (59%)
Query: 30 VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
+KK+ GL+ ++ T + +AYVSGLG+G +S FS +N L GPGT+G+ G+S
Sbjct: 94 LKKASEGLKSINPGETAPSMRLLAYVSGLGFGIMSGVFSFVNTLSDSLGPGTVGIHGDSP 153
Query: 90 YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKN 121
F ++ T LLHVFW IVFF G E K
Sbjct: 154 QFFLYSAFMTLVIILLHVFWGIVFFDGCEKKK 185
>gi|71834416|ref|NP_001025300.1| gamma-secretase subunit APH-1A [Danio rerio]
gi|66911405|gb|AAH97248.1| Zgc:114200 [Danio rerio]
Length = 253
Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 93/161 (57%), Gaps = 5/161 (3%)
Query: 30 VKKSRGGLQYVSDR-NTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGES 88
++K+ GL +SD ++ + MAYV+GLG+G + AFS++N+L GPGT+G+ G+S
Sbjct: 94 LRKATEGLAAISDDASSAISVRQMAYVAGLGFGVMRGAFSMINILSDSLGPGTVGIFGDS 153
Query: 89 QYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLF 148
QY+ T ++ T +LLH FW ++FF G E + ++A VV H+ ++ + +N
Sbjct: 154 QYYFITAALMTLALTLLHTFWGVLFFEGCEKSSWWVIAVVVSLHLLVAGLS-LLNPLYEG 212
Query: 149 SVLFIIVFTLFTAMFAYKVIGGSKK---TMCNGENLIAEAN 186
S+ + TL ++A+ GGS + +C + AE++
Sbjct: 213 SLPPVYCITLLMGIWAFFSSGGSLQNLSALCTRRKVEAESS 253
Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK 31
MT F GC AFGP A+F+ T+ +DP++
Sbjct: 1 MTLAVFFGCAFIAFGPAFALFVFTVAKDPLR 31
>gi|29243936|ref|NP_808251.1| gamma-secretase subunit APH-1B [Mus musculus]
gi|37077156|sp|Q8C7N7.1|APH1B_MOUSE RecName: Full=Gamma-secretase subunit APH-1B; Short=APH-1b;
AltName: Full=Aph-1beta
gi|26340556|dbj|BAC33940.1| unnamed protein product [Mus musculus]
gi|50927492|gb|AAH79659.1| Anterior pharynx defective 1b homolog (C. elegans) [Mus musculus]
gi|74191845|dbj|BAE32873.1| unnamed protein product [Mus musculus]
gi|148694179|gb|EDL26126.1| mCG130387, isoform CRA_a [Mus musculus]
Length = 257
Score = 79.0 bits (193), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 30 VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
+KK+ GL+ ++ T + +AYVSGLG+G +S FS +N L GPGT+G+ G+S
Sbjct: 94 LKKASEGLKSINPEETAPSMRLLAYVSGLGFGIMSGVFSFVNTLSNSLGPGTVGIHGDSP 153
Query: 90 YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNR 122
F ++ T +LHVFW +VFF G E KN+
Sbjct: 154 QFFLNSAFMTLVVIMLHVFWGVVFFDGCE-KNK 185
Score = 35.8 bits (81), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK 31
MT F GC AFGP +A+++ TI DP++
Sbjct: 1 MTAAVFFGCAFIAFGPALALYVFTIATDPLR 31
>gi|296483248|tpg|DAA25363.1| TPA: anterior pharynx defective 1c homolog isoform 2 [Bos taurus]
Length = 257
Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 83/146 (56%), Gaps = 1/146 (0%)
Query: 30 VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
+KK+ GL+ ++ + +AYVSGLG+G +S FS +N L GPGT+G+ G+
Sbjct: 94 LKKASEGLKTINPYEKAPSMRLLAYVSGLGFGIMSGVFSFVNTLSDSLGPGTVGIHGDPP 153
Query: 90 YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFS 149
F ++ T +LLHVFW IVFF G E K + V+LSH+ +S+ T GL
Sbjct: 154 QFFLYSAFMTLVITLLHVFWGIVFFDGCEKKKWYTLLVVLLSHLLVSALTLISPHYGLNL 213
Query: 150 VLFIIVFTLFTAMFAYKVIGGSKKTM 175
VL I+ L ++A+ V GGS +++
Sbjct: 214 VLAYIIMVL-MGVWAFFVSGGSCRSL 238
>gi|440907017|gb|ELR57210.1| Gamma-secretase subunit APH-1B, partial [Bos grunniens mutus]
Length = 236
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 83/146 (56%), Gaps = 1/146 (0%)
Query: 30 VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
+KK+ GL+ ++ + +AYVSGLG+G +S FS +N L GPGT+G+ G+
Sbjct: 73 LKKASEGLKTINPYEKAPSMRLLAYVSGLGFGIMSGVFSFVNTLSDSLGPGTVGIHGDPP 132
Query: 90 YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFS 149
F ++ T +LLHVFW IVFF G E K + V+LSH+ +S+ T GL
Sbjct: 133 QFFLYSAFMTLVITLLHVFWGIVFFDGCEKKKWYTLLVVLLSHLLVSALTLISPHYGLNL 192
Query: 150 VLFIIVFTLFTAMFAYKVIGGSKKTM 175
VL I+ L ++A+ V GGS +++
Sbjct: 193 VLAYIIMVL-MGVWAFFVSGGSCRSL 217
>gi|334314471|ref|XP_003340043.1| PREDICTED: LOW QUALITY PROTEIN: gamma-secretase subunit APH-1B-like
[Monodelphis domestica]
Length = 258
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 76/147 (51%), Gaps = 2/147 (1%)
Query: 30 VKKSRGGLQYVSDRNTMD-NTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGES 88
+KK+ GL +S T + +AYVSGLG+G +S FSL+N+L GPG +G+ G+
Sbjct: 94 LKKANKGLMTISQEETAPISIRQLAYVSGLGFGIMSGVFSLVNILSDSLGPGIVGIHGDP 153
Query: 89 QYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLF 148
F ++ T LLHVFW +VFF E + ++ L F+S T ++N
Sbjct: 154 PQFFLASAFMTLVMVLLHVFWGVVFFDACETNEFSTWLTIFLXFTFLSLQT-FLNPYYKA 212
Query: 149 SVLFIIVFTLFTAMFAYKVIGGSKKTM 175
S+ V L ++A+ GGS + +
Sbjct: 213 SLAASYVIMLLMGIWAFFAAGGSCRNL 239
Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK 31
MT F GCT AFGP +A+++ TI DP++
Sbjct: 1 MTAAVFFGCTCIAFGPALALYVFTIASDPLR 31
>gi|149030632|gb|EDL85669.1| anterior pharynx defective 1a homolog (C. elegans), isoform CRA_c
[Rattus norvegicus]
Length = 135
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 70/125 (56%), Gaps = 1/125 (0%)
Query: 51 AMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWS 110
++ VSGL +G IS FS++N+L GPG +G+ G+S Y+ T++ T LLH FW
Sbjct: 4 SLPPVSGLSFGIISGVFSVINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWG 63
Query: 111 IVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGG 170
+VFF E + + VV SH+ S T ++N S+L I T+ ++A+ GG
Sbjct: 64 VVFFDACERRRYWALGLVVGSHLLTSGLT-FLNPWYEASLLPIYAVTVSMGLWAFVTAGG 122
Query: 171 SKKTM 175
S +++
Sbjct: 123 SLRSI 127
>gi|148706905|gb|EDL38852.1| mCG16760, isoform CRA_b [Mus musculus]
Length = 144
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 70/125 (56%), Gaps = 1/125 (0%)
Query: 51 AMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWS 110
++ VSGL +G IS FS++N+L GPG +G+ G+S Y+ T++ T LLH FW
Sbjct: 13 SLPPVSGLSFGIISGVFSVINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWG 72
Query: 111 IVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGG 170
+VFF E + + VV SH+ S T ++N S+L I T+ ++A+ GG
Sbjct: 73 VVFFDACERRRYWALGLVVGSHLLTSGLT-FLNPWYEASLLPIYAVTVSMGLWAFITAGG 131
Query: 171 SKKTM 175
S +++
Sbjct: 132 SLRSI 136
>gi|156379915|ref|XP_001631701.1| predicted protein [Nematostella vectensis]
gi|156218745|gb|EDO39638.1| predicted protein [Nematostella vectensis]
Length = 115
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 54/81 (66%)
Query: 56 SGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFR 115
+GLGYG +S F+++NVL +SGPG++GL G +Q F ++ T CF LL+ FW +++F
Sbjct: 1 AGLGYGLMSGLFAMVNVLADISGPGSIGLHGNAQNFLIVSAFLTSCFVLLNTFWGVIWFD 60
Query: 116 GVEIKNRTLVASVVLSHIFIS 136
G E K V VV SH+F+S
Sbjct: 61 GWENKKWLNVFVVVASHLFVS 81
>gi|351698400|gb|EHB01319.1| Gamma-secretase subunit APH-1B [Heterocephalus glaber]
Length = 173
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 54/92 (58%)
Query: 30 VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
+KK+ GL+ ++ T + +AYVSGLG+G +S FS +N L GPGT+G+ G+S
Sbjct: 10 LKKASEGLKTINPDETAPSMRLLAYVSGLGFGIMSGVFSFVNTLSNSLGPGTVGIHGDSP 69
Query: 90 YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKN 121
F ++ T LLHVFW IVFF E K
Sbjct: 70 QFFLNSAFMTLVIILLHVFWGIVFFDACEKKK 101
>gi|395502615|ref|XP_003755674.1| PREDICTED: gamma-secretase subunit Aph-1b isoform 1 [Sarcophilus
harrisii]
Length = 258
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 30 VKKSRGGLQYVSDRNTMD-NTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGES 88
+KK+ GL +S T + +AYVSGLG+G +S FSL+N+L GPG +G+ G+
Sbjct: 94 LKKANKGLMTISQEETSPISIRQLAYVSGLGFGIMSGVFSLVNILSDSLGPGIVGIHGDP 153
Query: 89 QYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKN 121
F ++ T LLHVFW +VFF E KN
Sbjct: 154 PQFFLASAFMTLVMVLLHVFWGVVFFDACETKN 186
Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK 31
MT F GCT AFGP +A+++ TI DP++
Sbjct: 1 MTAAVFFGCTCIAFGPALALYVFTIASDPLR 31
>gi|198433082|ref|XP_002120450.1| PREDICTED: similar to predicted protein [Ciona intestinalis]
Length = 240
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 99/230 (43%), Gaps = 59/230 (25%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQ-----------------------------DPVK 31
M M F GCTM AFGP +AMF+ TI + P+K
Sbjct: 1 MPLMVFFGCTMIAFGPSLAMFILTIAKYPLKIILLVVGAFCWLLALLFSALLWLAVVPLK 60
Query: 32 KS-----------RGGLQY------VSDRNTMDN-----------TYAMAYVSGLGYGTI 63
+ + G++Y + N +D+ + ++Y +G G+G +
Sbjct: 61 EQLAFSLVFSVIFQEGMRYGLFRMMKNAENGLDDALSEDEKKSISNHKLSYTTGFGFGLM 120
Query: 64 SAAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRT 123
FS++NVL Q GPG++G+ G S F ++ T LLH FW+++ F + +
Sbjct: 121 YGLFSIVNVLSQSIGPGSVGIDGHSSNFMLISAFLTSSTILLHTFWNVIVFDALNKQQYY 180
Query: 124 LVASVVLSHIFISSYTWYMNSSGLFSVLFIIVFTLF--TAMFAYKVIGGS 171
V +VV H+ +S + L V I+ + + T ++A+K GGS
Sbjct: 181 KVITVVCLHMLVSCCSLLNVQQNLAYVSVIVSYIVLIGTTVWAFKAAGGS 230
>gi|348555589|ref|XP_003463606.1| PREDICTED: gamma-secretase subunit APH-1B-like isoform 2 [Cavia
porcellus]
Length = 257
Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 52/92 (56%)
Query: 30 VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
+KK+ GL+ ++ + + YVSGLG+G +S FS +N L GPGT+G+ G+S
Sbjct: 94 LKKASKGLKSINPDEAAPSMQLLGYVSGLGFGIMSGVFSFVNTLSNSLGPGTVGIHGDSP 153
Query: 90 YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKN 121
F ++ T LLHVFW IVFF E K
Sbjct: 154 QFFLNSAFMTLAIILLHVFWGIVFFDACEKKK 185
>gi|21492616|ref|NP_080950.1| putative gamma-secretase subunit APH-1C [Mus musculus]
gi|37077773|sp|Q9DCZ9.1|APH1C_MOUSE RecName: Full=Putative gamma-secretase subunit APH-1C
gi|12832198|dbj|BAB22004.1| unnamed protein product [Mus musculus]
gi|29747906|gb|AAH50923.1| Anterior pharynx defective 1c homolog (C. elegans) [Mus musculus]
gi|38648719|gb|AAH63254.1| Anterior pharynx defective 1c homolog (C. elegans) [Mus musculus]
gi|74196377|dbj|BAE33077.1| unnamed protein product [Mus musculus]
gi|148694183|gb|EDL26130.1| mCG130385 [Mus musculus]
Length = 258
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 58/94 (61%), Gaps = 2/94 (2%)
Query: 30 VKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGES 88
+KK+ GL+ ++ + + + +AYVSGLG+G +S FS +N L GPGT+G+ G+S
Sbjct: 94 LKKASEGLKSINPEEDIAPSMRLLAYVSGLGFGIMSGVFSFVNTLSNSLGPGTVGIHGDS 153
Query: 89 QYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNR 122
F ++ T +LHVFW +VFF G E KN+
Sbjct: 154 PQFFLNSAFMTLVVIMLHVFWGVVFFDGCE-KNK 186
Score = 36.2 bits (82), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK 31
MT F GC AFGP A++L TI DP++
Sbjct: 1 MTLPVFFGCAFIAFGPAFALYLFTIATDPLR 31
>gi|149042019|gb|EDL95860.1| rCG58121, isoform CRA_b [Rattus norvegicus]
Length = 145
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 70/124 (56%), Gaps = 1/124 (0%)
Query: 52 MAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSI 111
+AYVSGLG+G +S FS +N L GPGT+G+ G+S F ++ T +LHVFW I
Sbjct: 4 LAYVSGLGFGIMSGVFSFVNTLSNALGPGTVGIHGDSPQFFLNSAFMTLVIIMLHVFWGI 63
Query: 112 VFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGS 171
VFF G E KN+ + VL + S ++ +++ + + ++A+ V GGS
Sbjct: 64 VFFDGCE-KNKWYILLTVLLTHLLVSTQTLLSPHYEVNLVTAYIIMVLMGIWAFCVAGGS 122
Query: 172 KKTM 175
++++
Sbjct: 123 RRSL 126
>gi|68158704|dbj|BAE02661.1| anterior pharynx defective 1b putative splice variant [Mus
musculus]
Length = 208
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 81/147 (55%), Gaps = 2/147 (1%)
Query: 30 VKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGES 88
+KK+ GL+ ++ + + + +AYVSGLG+G +S FS +N L GPGT+G+ G+S
Sbjct: 44 LKKASEGLKSINPEEDIAPSMRLLAYVSGLGFGIMSGVFSFVNTLSNSLGPGTVGIHGDS 103
Query: 89 QYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLF 148
F ++ T +LHVFW +VFF G E KN+ VL + S +++
Sbjct: 104 PQFFLNSAFMTLVVIMLHVFWGVVFFDGCE-KNKWYTLLTVLLTHLVVSTQTFLSPYYEV 162
Query: 149 SVLFIIVFTLFTAMFAYKVIGGSKKTM 175
+++ + + ++A+ V GGS +++
Sbjct: 163 NLVTAYIIMVLMGIWAFYVAGGSCRSL 189
>gi|340367883|ref|XP_003382482.1| PREDICTED: gamma-secretase subunit Aph-1b-like [Amphimedon
queenslandica]
Length = 235
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Query: 30 VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
+KK+ L+ VS+ + + +AYV GLG+G I+ NVL SGPGT+ +Q
Sbjct: 85 LKKADHLLEIVSEDKSDLRKHKIAYVGGLGFGLIAGIVMFANVLSVASGPGTVR---SNQ 141
Query: 90 YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMN 143
YF ++ T +LH+ W ++FF G+E KN + +V +SH+FIS + +N
Sbjct: 142 YFVTVSAFSTQVMIILHICWGVIFFAGLESKNWLYIFAVPISHMFISCLSLLIN 195
>gi|387598141|gb|AFJ91726.1| anterior pharynx defective 1, partial [Ostrea edulis]
Length = 165
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 69/164 (42%), Gaps = 62/164 (37%)
Query: 1 MTYMEFLGCTMTAFGPVIAM---------------------------------------- 20
MT MEF GCT AFGP A+
Sbjct: 1 MTVMEFFGCTFIAFGPPFALFVFTIARDPLRIIVLIASGFFWLLSLLVSSILWYAVVPLR 60
Query: 21 ------FLTTIMQDP--------VKKSRGGLQYVSD--------RNTMDNTYAMAYVSGL 58
F + + Q+ ++K+ GLQ VS + N + MAYVSGL
Sbjct: 61 ETLAFVFFSVLFQEAFRLLFYKLLRKADDGLQKVSQTGQEMHMTPRDISNKHIMAYVSGL 120
Query: 59 GYGTISAAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCF 102
G+G +S FS +NVL + GPGT+G++G+S+YF T++ T F
Sbjct: 121 GFGILSGTFSTVNVLADMVGPGTIGIRGDSKYFFVVTALLTLSF 164
>gi|358341309|dbj|GAA49019.1| anterior pharynx defective 1 [Clonorchis sinensis]
Length = 293
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 79/160 (49%), Gaps = 8/160 (5%)
Query: 23 TTIMQDPVKKSRGGL--QYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPG 80
T ++DP + G L + + + +D+ +AYVSGLG+G ++ F LL +L GPG
Sbjct: 123 TAALRDPSNQDGGVLPSKTLGNDGLLDHRI-VAYVSGLGFGLMTCIFELLRILIDAWGPG 181
Query: 81 TMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTW 140
E++ F + C SL+H+FWS++ F E ++ L+ V +H+ + Y
Sbjct: 182 IGFEVWEAKTFYLVAAFQVMCTSLMHIFWSVILFAAFERRDYVLLVLVYATHLAV-PYLS 240
Query: 141 YMN----SSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTMC 176
++N LF +V + A+ A V+ G + T C
Sbjct: 241 FLNRLHPPWPELVCLFYMVVLVGLAIVARCVVTGKRFTCC 280
>gi|339237585|ref|XP_003380347.1| protein dif-1 [Trichinella spiralis]
gi|316976828|gb|EFV60037.1| protein dif-1 [Trichinella spiralis]
Length = 1132
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 42/166 (25%), Positives = 81/166 (48%), Gaps = 21/166 (12%)
Query: 30 VKKSRGGLQYVSDRNT--------MDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGT 81
+++++ GL V++ N + +++V G+G+G+++ +L+N L SGPGT
Sbjct: 946 IRRAQAGLDVVTEGNDSVEGVHPLKHANHMISFVIGMGFGSMAGVIALVNGLADSSGPGT 1005
Query: 82 MGLKGE--------SQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHI 133
+GL S +F +SI LLHV W+++ F + K L + H
Sbjct: 1006 VGLPSALKFNDMHGSYHFFLISSISVAALILLHVMWNVIIFHACDKKATWLAMFAIADHF 1065
Query: 134 FISSYTWYMNSSGLFSVLFIIVF---TLFTAMFAYKVIGGSKKTMC 176
++ ++Y N S +++ ++ LF+ + A+ V GG+ K C
Sbjct: 1066 LVAGISFY-NRSNVWAASLSCLYGSLLLFSGL-AFAVSGGNVKNAC 1109
>gi|170584346|ref|XP_001896962.1| gamma-secretase subunit aph-1 [Brugia malayi]
gi|158595651|gb|EDP34190.1| gamma-secretase subunit aph-1, putative [Brugia malayi]
Length = 252
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 66/149 (44%), Gaps = 26/149 (17%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVKK---SRGGLQYVSD--------RNTMDNT 49
M + +G AF P + +F I DP++ GGL ++S +
Sbjct: 1 MAVLAGIGYLFIAFSPSVVIFRRVIASDPLRIILFVLGGLNHMSTAGQRITGMHSLRHAR 60
Query: 50 YAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKG---------------ESQYFGFT 94
+ +A V GLG G ++A F ++NV+ G GT+GL QYF T
Sbjct: 61 HILATVCGLGMGMMAALFLIINVIADFWGHGTVGLPATVPYVSDRFTVKLLPNDQYFPIT 120
Query: 95 TSIFTCCFSLLHVFWSIVFFRGVEIKNRT 123
SI C +L HVFW+++F+ G K T
Sbjct: 121 YSISACMVTLCHVFWTVIFWDGCHKKGTT 149
>gi|290462079|gb|ADD24087.1| Gamma-secretase subunit Aph-1 [Lepeophtheirus salmonis]
Length = 255
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 79/152 (51%), Gaps = 9/152 (5%)
Query: 32 KSRGGLQYVSDRNTM--DNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLK---- 85
K+R + +++ + + D + +AYV G G+G S F L+NVL GPGT+G+K
Sbjct: 87 KARSFMSKLTENDPIFGDKPHILAYVLGFGFGISSGLFGLVNVLADSLGPGTLGIKGGDF 146
Query: 86 GESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSS 145
G S++F +++F+ L H W ++ F E K + +V H +S + +N S
Sbjct: 147 GVSRHFFIFSALFSLAIVLCHTAWGVIAFSACEEKKYLRLVTVWAMHYALSGIS-LLNQS 205
Query: 146 GLFSVLFIIVFTLFTA--MFAYKVIGGSKKTM 175
L+++ I + + T+ A+ + GGS ++
Sbjct: 206 QLYALTLITTYLILTSSIAMAFFIAGGSVNSL 237
>gi|290563082|gb|ADD38935.1| Gamma-secretase subunit Aph-1 [Lepeophtheirus salmonis]
Length = 255
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 79/152 (51%), Gaps = 9/152 (5%)
Query: 32 KSRGGLQYVSDRNTM--DNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLK---- 85
K+R + +++ + + D + +AYV G G+G S F L+NVL GPGT+G+K
Sbjct: 87 KARSFMSKLTENDPIFGDKPHILAYVLGFGFGISSGLFGLVNVLADSLGPGTLGIKGGDF 146
Query: 86 GESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSS 145
G S++F +++F+ L H W ++ F E K + +V H +S + +N S
Sbjct: 147 GVSRHFFIFSALFSLAIVLCHTAWGVIAFSACEEKKYLRLVTVWAMHYALSGIS-LLNQS 205
Query: 146 GLFSVLFIIVFTLFTA--MFAYKVIGGSKKTM 175
L+++ I + + T+ A+ + GGS ++
Sbjct: 206 QLYALTLITTYLILTSSIAMAFFIAGGSVNSL 237
>gi|225711918|gb|ACO11805.1| Gamma-secretase subunit Aph-1 [Lepeophtheirus salmonis]
Length = 255
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 79/152 (51%), Gaps = 9/152 (5%)
Query: 32 KSRGGLQYVSDRNTM--DNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLK---- 85
K+R + +++ + + D + +AYV G G+G S F L+NVL GPGT+G+K
Sbjct: 87 KARSFMSKLTENDPIFGDKPHILAYVLGFGFGISSGLFGLVNVLADSLGPGTLGIKGGDF 146
Query: 86 GESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSS 145
G S++F +++F+ L H W ++ F E K + +V H +S + +N S
Sbjct: 147 GVSRHFFIFSALFSLVIVLCHTAWGVIAFSACEEKKYLRLVTVWAMHYALSGIS-LLNQS 205
Query: 146 GLFSVLFIIVFTLFTA--MFAYKVIGGSKKTM 175
L+++ I + + T+ A+ + GGS ++
Sbjct: 206 QLYALTLITTYLILTSSIAMAFFIAGGSVNSL 237
>gi|312070303|ref|XP_003138084.1| gamma-secretase subunit aph-1 [Loa loa]
gi|307766750|gb|EFO25984.1| gamma-secretase subunit aph-1 [Loa loa]
Length = 255
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 69/149 (46%), Gaps = 26/149 (17%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVKK---SRGGL-------QYVSDRNTM-DNT 49
M + +G AF P + +F I DP++ GGL Q ++ +T+ D
Sbjct: 1 MAVLAGVGYLFIAFSPSLVIFRRVIASDPLRIILFVLGGLNHMSVAGQRIAGVHTLRDAR 60
Query: 50 YAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGE---------------SQYFGFT 94
+ +A V GLG G ++A F ++NV+ G GT+GL Q+F T
Sbjct: 61 HVLATVCGLGMGVMAALFLIINVIADFWGHGTVGLPATVPYISDRFTVKLLSTDQHFPIT 120
Query: 95 TSIFTCCFSLLHVFWSIVFFRGVEIKNRT 123
SI C +L HVFW+++F+ G K T
Sbjct: 121 YSISACMVTLCHVFWTVLFWDGCHKKGIT 149
>gi|402582827|gb|EJW76772.1| hypothetical protein WUBG_12319 [Wuchereria bancrofti]
Length = 251
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 66/149 (44%), Gaps = 26/149 (17%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVKK---SRGGLQYVSD--------RNTMDNT 49
M + +G AF P + +F I DP++ GGL ++S +
Sbjct: 1 MAVLAGIGYLFIAFSPSVVIFRRVIASDPLRIILFVLGGLNHMSTAGQRITGMHSLRHAR 60
Query: 50 YAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKG---------------ESQYFGFT 94
+ +A V GLG G ++A F ++NV+ G GT+GL QYF T
Sbjct: 61 HILATVCGLGMGMMAAIFLVINVIADFWGHGTVGLPATVPYVSDRFTVKLLPNDQYFPIT 120
Query: 95 TSIFTCCFSLLHVFWSIVFFRGVEIKNRT 123
SI C +L HVFW+++F+ G K T
Sbjct: 121 YSISACMVTLCHVFWTVLFWDGCHKKGTT 149
>gi|47214485|emb|CAG12490.1| unnamed protein product [Tetraodon nigroviridis]
Length = 217
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 93/223 (41%), Gaps = 54/223 (24%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVKKS---RGGLQY----------------VS 41
MT F GCT AFGP I++F+ TI ++P++ G + +S
Sbjct: 1 MTAAVFFGCTFIAFGPAISLFVFTIAREPLRVIFLIAGAFFWLVSLLLSSLVWFISVQIS 60
Query: 42 DRNT-----------------MDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGL 84
D+++ + T+ AY Y + A L L Q TM +
Sbjct: 61 DKDSAAQQKGLLIFGVVLSVVLQETFRFAY-----YKLLKKANEGLLTLSQ---EETMPI 112
Query: 85 KGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNS 144
+ F T LLH+FW +VFF E + VA+VV+SH+ +S T + N
Sbjct: 113 STRQLAYAFMTMAII----LLHMFWGVVFFDACEKQRWWAVAAVVISHLIVSCLT-FQNP 167
Query: 145 SGLFSVLFIIVFTLFTAMFAYKVIGGSKKTM-----CNGENLI 182
S + S++ V ++A+ GGS + + C ++L+
Sbjct: 168 SYVASLVPTYVVLFLMGIWAFYTAGGSLRNLKLCLTCKDKDLL 210
>gi|308485734|ref|XP_003105065.1| CRE-APH-1 protein [Caenorhabditis remanei]
gi|308257010|gb|EFP00963.1| CRE-APH-1 protein [Caenorhabditis remanei]
Length = 314
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 29/177 (16%)
Query: 30 VKKSRGGLQYVSDRNTM----------DNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGP 79
+KK++ GL ++ + + + + +A V GLG G ISA F +N SGP
Sbjct: 86 LKKAQKGLNKITRQGQISVAPGVSDLHNARHMLALVCGLGMGVISALFYTMNAFAVFSGP 145
Query: 80 GTMGLK-----GE------SQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNR-----T 123
GT+GL GE +Y ++ SL HV W+I+ + +R
Sbjct: 146 GTIGLPLALETGEIDPNRAGKYLPLCYTLSAILLSLFHVTWTIMVWDTCHKIDRIPSAFV 205
Query: 124 LVASVVLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAY--KVIGGSKKTMCNG 178
A+ ++SH+ + ++ +NS G + V+F + F + AY ++GG+ + NG
Sbjct: 206 PAAAALISHLLV-AFLSSLNSRGFYIVVFPVQFLILLICIAYCNVIMGGTISSFING 261
>gi|167522377|ref|XP_001745526.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775875|gb|EDQ89497.1| predicted protein [Monosiga brevicollis MX1]
Length = 244
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 30 VKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGES 88
++++ L +S D + + +A VSGLGYG +S+ N+LD +SGPG + +G +
Sbjct: 85 LRRTEHDLSILSPDGDVVITREKLAMVSGLGYGLMSSTMMTCNLLDIMSGPGILAARGCT 144
Query: 89 QYFGFTTSIFTCC-FSLLHVFWSIVFFRGVEIKN 121
+ FT S T L HVFW I+ F G +I+
Sbjct: 145 DHSHFTISSTTAAMIGLTHVFWGIIAFSGWDIRR 178
>gi|148694180|gb|EDL26127.1| mCG130387, isoform CRA_b [Mus musculus]
Length = 236
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 39/62 (62%)
Query: 30 VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
+KK+ GL+ ++ T + +AYVSGLG+G +S FS +N L GPGT+G+ G+S
Sbjct: 118 LKKASEGLKSINPEETAPSMRLLAYVSGLGFGIMSGVFSFVNTLSNSLGPGTVGIHGDSP 177
Query: 90 YF 91
F
Sbjct: 178 QF 179
Score = 35.8 bits (81), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK 31
MT F GC AFGP +A+++ TI DP++
Sbjct: 25 MTAAVFFGCAFIAFGPALALYVFTIATDPLR 55
>gi|26324468|dbj|BAC25988.1| unnamed protein product [Mus musculus]
gi|74200360|dbj|BAE36975.1| unnamed protein product [Mus musculus]
gi|148694181|gb|EDL26128.1| mCG130387, isoform CRA_c [Mus musculus]
Length = 212
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 39/62 (62%)
Query: 30 VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
+KK+ GL+ ++ T + +AYVSGLG+G +S FS +N L GPGT+G+ G+S
Sbjct: 94 LKKASEGLKSINPEETAPSMRLLAYVSGLGFGIMSGVFSFVNTLSNSLGPGTVGIHGDSP 153
Query: 90 YF 91
F
Sbjct: 154 QF 155
Score = 35.8 bits (81), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK 31
MT F GC AFGP +A+++ TI DP++
Sbjct: 1 MTAAVFFGCAFIAFGPALALYVFTIATDPLR 31
>gi|324514565|gb|ADY45911.1| Gamma-secretase subunit aph-1 [Ascaris suum]
Length = 310
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 29/145 (20%)
Query: 30 VKKSRGGLQ-------YVSDRNTMDNT-YAMAYVSGLGYGTISAAFSLLNVLDQVSGPGT 81
+KK++ GL ++S +T+ + + +A V GLG G ++A F ++NV+ G GT
Sbjct: 85 LKKAQKGLSKMAANGMHISGVHTLHHARHMLAVVCGLGMGVMAALFLIINVIADFWGNGT 144
Query: 82 MGLK---------------GESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRT--- 123
+GL + + F T S+ C +L H+ W+I+F+ G K T
Sbjct: 145 VGLPATIPEVADRFDVKLFAKDEKFPLTYSLSACILTLCHMCWTILFWDGCHKKKHTNTW 204
Query: 124 --LVASVVLSHIFISSYTWYMNSSG 146
+A VV SH +S+ + + N +G
Sbjct: 205 WISIAFVVASHYAVSALS-FWNRNG 228
>gi|335279581|ref|XP_003353379.1| PREDICTED: gamma-secretase subunit APH-1B-like, partial [Sus
scrofa]
Length = 159
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 30 VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
+KK+ GL+ ++ T + +AYVSGLG+G +S FS +N L GPGT+G+ G+
Sbjct: 94 LKKASEGLKSLNPDETAPSMRLLAYVSGLGFGIMSGVFSFVNTLSDSLGPGTVGIHGDPP 153
Query: 90 YF 91
F
Sbjct: 154 QF 155
>gi|17509423|ref|NP_492469.1| Protein APH-1 [Caenorhabditis elegans]
gi|37076812|sp|O45876.1|APH1_CAEEL RecName: Full=Gamma-secretase subunit aph-1; AltName:
Full=Anterior-pharynx-defective protein 1; AltName:
Full=Presenilin enhancer protein 1
gi|3880371|emb|CAA16282.1| Protein APH-1 [Caenorhabditis elegans]
Length = 308
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 80/177 (45%), Gaps = 29/177 (16%)
Query: 30 VKKSRGGLQYVSDRNTM----------DNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGP 79
+KK++ GL ++ + + + + +A V GLG G ISA F +N SGP
Sbjct: 86 LKKAQRGLNKITRQGQISVAPGVSDLHNARHMLALVCGLGMGVISALFYTMNAFAIFSGP 145
Query: 80 GTMGLK-----GE------SQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLV--- 125
GT+GL GE +Y ++ +L HV W+I+ + R
Sbjct: 146 GTIGLPNALKTGEIDTNRAGKYLPLCYTLSAILLTLFHVTWTIMVWDSCHKIGRIPSAFV 205
Query: 126 --ASVVLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAY--KVIGGSKKTMCNG 178
A+ V+SH+ + ++ +NS G ++F + F + AY ++GG+ + NG
Sbjct: 206 PGAAAVVSHLLV-TFLSSLNSRGFHVLVFAVQFLILLICIAYCNVIMGGTISSFVNG 261
>gi|56757001|gb|AAW26672.1| SJCHGC06550 protein [Schistosoma japonicum]
Length = 313
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 23 TTIMQDPVKKSRGGLQYVSDRNT----MDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSG 78
T++ + S G V D N +D+ +AYVSGLGYG +S LL +L G
Sbjct: 143 NTVLANDYDNSTGVQIIVGDNNNNIVQLDHR-TVAYVSGLGYGLMSCIIQLLRILIDSYG 201
Query: 79 PGT-MGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRG 116
PG M +S+ F S C S+L VFWS++ F G
Sbjct: 202 PGIFMYSTWDSKTFFLFASCQCMCISMLQVFWSLILFTG 240
>gi|341880559|gb|EGT36494.1| hypothetical protein CAEBREN_22638 [Caenorhabditis brenneri]
Length = 325
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 82/177 (46%), Gaps = 29/177 (16%)
Query: 30 VKKSRGGLQYVSDRNTM----------DNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGP 79
+KK++ GL ++ + + + + +A V GLG G ISA F +N SGP
Sbjct: 86 LKKAQKGLNKITRQGQISVAPGVSDLHNARHMLALVCGLGMGVISALFYTMNAFAIFSGP 145
Query: 80 GTMGLK-----GE------SQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLV--- 125
GT+GL GE ++ + +L HV W+I+ + +R
Sbjct: 146 GTIGLPLALETGEIDPNRAGKFLPLCYVLSAILLTLFHVTWTIMVWDMCHKIDRLPSAFV 205
Query: 126 --ASVVLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAY--KVIGGSKKTMCNG 178
A+ ++SH+ + ++ +N+ G + ++F + F + AY ++GG+ +T NG
Sbjct: 206 PGAAALVSHLLV-AFLSSLNARGFYIIVFSVQFLVLLICIAYCNVIMGGTIQTFING 261
>gi|341894341|gb|EGT50276.1| CBN-APH-1 protein [Caenorhabditis brenneri]
Length = 328
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 82/177 (46%), Gaps = 29/177 (16%)
Query: 30 VKKSRGGLQYVSDRNTM----------DNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGP 79
+KK++ GL ++ + + + + +A V GLG G ISA F +N SGP
Sbjct: 86 LKKAQKGLNKITRQGQISVAPGVSDLHNARHMLALVCGLGMGVISALFYTMNAFAIFSGP 145
Query: 80 GTMGLK-----GE------SQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLV--- 125
GT+GL GE ++ + +L HV W+I+ + +R
Sbjct: 146 GTIGLPLALETGEIDPNRAGKFLPLCYVLSAILLTLFHVTWTIMVWDMCHKIDRLPSAFV 205
Query: 126 --ASVVLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAY--KVIGGSKKTMCNG 178
A+ ++SH+ + ++ +N+ G + ++F + F + AY ++GG+ +T NG
Sbjct: 206 PGAAALVSHLLV-AFLSSLNARGFYIIVFSVQFLVLLICIAYCNVIMGGTIQTFING 261
>gi|326426628|gb|EGD72198.1| hypothetical protein PTSG_00220 [Salpingoeca sp. ATCC 50818]
Length = 255
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 20/149 (13%)
Query: 31 KKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQY 90
K +G D + + + +VSGLG+G +SA + N+LD ++GPG + +G +
Sbjct: 87 KAEKGLSTLTPDGDVVITREKLWFVSGLGFGVMSAVMMMSNMLDIMTGPGMVPARGCPDF 146
Query: 91 FGFTTS-IFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFS 149
FT S + + + H FW ++ G + RT+ S +FI S W LF
Sbjct: 147 NLFTISALVSAAIVMCHAFWGVI--AGKAWEQRTISKS-----MFIPSRDW-----KLFF 194
Query: 150 VLFIIVFTLFTAMFAYKVIGGSKKTMCNG 178
VL + F F + + KT C G
Sbjct: 195 VLAMHYFVAFLTI-------DADKTTCVG 216
>gi|281211533|gb|EFA85695.1| gamma-secretase subunit Aph-1 [Polysphondylium pallidum PN500]
Length = 148
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 61/140 (43%), Gaps = 22/140 (15%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVKKSRGGLQYVSDRNTMDNTYAMAYVSGLGY 60
MT + F GC AF P I F I RN+ A+A +G G
Sbjct: 1 MTALLFYGCLFVAFSPSIVFFTMVI----------------SRNSQLVIMAIAIGTGSG- 43
Query: 61 GTISAAFSLL-NVLDQVSGPGTMGLKGESQYFGFTTS-IFTCCFSLLHVFWSIVFFRGVE 118
I+ F + +L + GPG + F S I+ CFSLLH+ W+I F+G
Sbjct: 44 --ITYGFVMYGTILWEAQGPGNLFSPACPTVSLFILSAIYALCFSLLHIAWNITAFQGYR 101
Query: 119 IKNRTLVASVVLSHIFISSY 138
KN V V+LSH F +SY
Sbjct: 102 TKNYFNVGVVLLSH-FAASY 120
>gi|268571837|ref|XP_002648820.1| C. briggsae CBR-APH-1 protein [Caenorhabditis briggsae]
Length = 315
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 77/173 (44%), Gaps = 29/173 (16%)
Query: 30 VKKSRGGLQYVSDRNTM----------DNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGP 79
+KK++ GL ++ + + + +A V GLG G ISA F +N +GP
Sbjct: 86 LKKAQKGLNKITRHGQISVAPGVSDLHNARHMLALVCGLGMGVISALFYTMNAFATFAGP 145
Query: 80 GTMGLK-----------GESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLV--- 125
GT+GL +Y + +L HV W+I+ + R
Sbjct: 146 GTIGLPMALETGHIDSNRAGKYLPLCYVLSAILLTLFHVAWTIMVWDTCHKIGRFPTAFV 205
Query: 126 --ASVVLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAY--KVIGGSKKT 174
A+ V+SH+F+ ++ +NS G + ++F + F + AY ++GG+ ++
Sbjct: 206 PGAAAVVSHLFV-AFLSSLNSRGFYILVFSVQFLVLLICIAYCNVIMGGTIQS 257
>gi|384493759|gb|EIE84250.1| hypothetical protein RO3G_08960 [Rhizopus delemar RA 99-880]
Length = 185
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 80/166 (48%), Gaps = 12/166 (7%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVKKSRGGLQYVSDRNTMDNTYAMAYVSGLGY 60
MT F GC + A+GP++++FL +I + + + ++ + + + + G GY
Sbjct: 1 MTLYTFFGCLLFAYGPILSIFLLSIAPN-AQYVLLTVSSIAIQEICRWGFYLMTLFGYGY 59
Query: 61 GTISAAFSLLNVLDQVSGPGTMGLKGESQY-FGFTTSIFTCCFSLLHVFWSIVFFRGV-- 117
+A+ +++L + GPG M Q F +I T FSLLH+ W ++ G
Sbjct: 60 ALTNASVGYISLLVESIGPGVMMCPSCPQASLYFIYAITTTLFSLLHIGWMMIACEGYSE 119
Query: 118 --EIKNRTLVASVVLSHIFISSYTWYMNSS-----GLFSVLFIIVF 156
+ K + V+LSH + +S+ +NSS G + +FI +F
Sbjct: 120 LPQKKGYLKIIWVILSH-YGASFATTLNSSTSVNYGCIASIFICLF 164
>gi|256080088|ref|XP_002576315.1| gamma-secretase subunit aph-1 [Schistosoma mansoni]
gi|350646020|emb|CCD59297.1| gamma-secretase subunit aph-1, putative [Schistosoma mansoni]
Length = 320
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 52 MAYVSGLGYGTISAAFSLLNVLDQVSGPG-TMGLKGESQYFGFTTSIFTCCFSLLHVFWS 110
+AYVSGLGYG +S L +L GPG T+ S+ F +S C S+L VFWS
Sbjct: 180 VAYVSGLGYGLMSCIIQSLRILIDSYGPGITIYSTWNSRTFFLFSSCQCMCISMLQVFWS 239
Query: 111 IVFF 114
++ F
Sbjct: 240 LILF 243
>gi|402874517|ref|XP_003901082.1| PREDICTED: gamma-secretase subunit APH-1B [Papio anubis]
Length = 216
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 84/202 (41%), Gaps = 32/202 (15%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVKKS--------------RGGLQYVSDRNTM 46
MT F GC AFGP +A+++ TI DP++ L + R
Sbjct: 1 MTAAVFFGCAFIAFGPALALYVFTIATDPLRVIFLIAGAFFWLVSLLISSLVWFMARVIT 60
Query: 47 DNTYAMAYVSGLGYGTISAA-------FSLLNVLDQVS------GPGTMGLKGESQYFGF 93
DN L +G + F+ +L + S PG + F
Sbjct: 61 DNKDGPTQKYLLIFGAFVSVYIQEMFRFAYYRLLKKASEGLKSINPGETAPSMRLLAYAF 120
Query: 94 TTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFSVLFI 153
T + LLHVFW IVFF G E K L+ V+L+H+ +S+ T+ + G+ V
Sbjct: 121 MTLVII----LLHVFWGIVFFDGCEKKKWCLLLIVLLTHLLVSAQTFISSYYGINLVSAF 176
Query: 154 IVFTLFTAMFAYKVIGGSKKTM 175
I+ L +A+ V GGS +++
Sbjct: 177 IILVL-MGTWAFFVAGGSCRSL 197
>gi|403298219|ref|XP_003939928.1| PREDICTED: gamma-secretase subunit APH-1B isoform 2 [Saimiri
boliviensis boliviensis]
Length = 216
Score = 43.1 bits (100), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 85/202 (42%), Gaps = 32/202 (15%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK--------------KSRGGLQYVSDRNTM 46
MT F GC AFGP +A+++ TI +P++ L + R
Sbjct: 1 MTAAVFFGCAFIAFGPALALYVFTIATEPLRIIFLIAGAFFWLVSLLISSLVWFMARVIT 60
Query: 47 DNTYAMAYVSGLGYGTISAAF-------SLLNVLDQVS------GPGTMGLKGESQYFGF 93
DN L +G + + F + +L + S PG + F
Sbjct: 61 DNKDGPIQKYLLIFGALVSVFIQEMFRFAYYRLLKKASEGLKSINPGETAPSMRLLAYAF 120
Query: 94 TTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFSVLFI 153
T + LLHVFW IVFF G E K ++ V+L+H+ +S+ T+ G+ V
Sbjct: 121 MTLVII----LLHVFWGIVFFDGCERKKWYILLIVLLTHLLVSAQTFISPHYGINLVSAF 176
Query: 154 IVFTLFTAMFAYKVIGGSKKTM 175
I+ L ++A+ V GGS +++
Sbjct: 177 IILVL-MGIWAFFVAGGSCRSL 197
>gi|224548987|ref|NP_001139118.1| gamma-secretase subunit APH-1B isoform 2 [Homo sapiens]
gi|114657500|ref|XP_001173827.1| PREDICTED: uncharacterized protein LOC467700 isoform 1 [Pan
troglodytes]
gi|397515498|ref|XP_003827987.1| PREDICTED: gamma-secretase subunit APH-1B [Pan paniscus]
gi|62533247|dbj|BAD95573.1| anterior pharynx defective 1b short splicing variant [Homo sapiens]
Length = 216
Score = 42.7 bits (99), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 88/220 (40%), Gaps = 49/220 (22%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK--------------KSRGGLQYVSDRNTM 46
MT F GC AFGP +A+++ TI +P++ L + R +
Sbjct: 1 MTAAVFFGCAFIAFGPALALYVFTIATEPLRIIFLIAGAFFWLVSLLISSLVWFMARVII 60
Query: 47 DNTYAMAYVSGLGYGTISAA-------FSLLNVLDQVS------GPGTMGLKGESQYFGF 93
DN L +G + F+ +L + S PG + F
Sbjct: 61 DNKDGPTQKYLLIFGAFVSVYIQEMFRFAYYKLLKKASEGLKSINPGETAPSMRLLAYAF 120
Query: 94 TTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVL------SHIFISSYTWYMNSSGL 147
T + LLHVFW IVFF G E K ++ V+L + FISSY + +N +
Sbjct: 121 MTLVII----LLHVFWGIVFFDGCEKKKWGILLIVLLTHLLVSAQTFISSY-YGINLASA 175
Query: 148 FSVLFIIVFTLFTAMFAYKVIGGSKKT-----MCNGENLI 182
F +L ++ +A+ GGS ++ +C +N +
Sbjct: 176 FIILVLM------GTWAFLAAGGSCRSLKLCLLCQDKNFL 209
>gi|119598050|gb|EAW77644.1| anterior pharynx defective 1 homolog B (C. elegans), isoform CRA_a
[Homo sapiens]
Length = 190
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 55/148 (37%), Gaps = 31/148 (20%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK--------------KSRGGLQYVSDRNTM 46
MT F GC AFGP +A+++ TI +P++ L + R +
Sbjct: 1 MTAAVFFGCAFIAFGPALALYVFTIATEPLRIIFLIAGAFFWLVSLLISSLVWFMARVII 60
Query: 47 DNTYAMAYVSGLGYGTISAA-------FSLLNVLDQVS------GPGTMGLKGESQYFGF 93
DN L +G + F+ +L + S PG + F
Sbjct: 61 DNKDGPTQKYLLIFGAFVSVYIQEMFRFAYYKLLKKASEGLKSINPGETAPSMRLLAYAF 120
Query: 94 TTSIFTCCFSLLHVFWSIVFFRGVEIKN 121
T + LLHVFW IVFF G E K
Sbjct: 121 MTLVII----LLHVFWGIVFFDGCEKKK 144
>gi|330822438|ref|XP_003291659.1| hypothetical protein DICPUDRAFT_39331 [Dictyostelium purpureum]
gi|325078158|gb|EGC31825.1| hypothetical protein DICPUDRAFT_39331 [Dictyostelium purpureum]
Length = 315
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Query: 57 GLGYGTISAAFSLLNVLDQVSGPGTM-GLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFR 115
G+G GT ++L + +GPGTM + +SI T C ++LHV ++++ F+
Sbjct: 191 GVGNGTAYGFIMFGSILWESTGPGTMFSPACPTVNLFMLSSIITLCMTILHVVYNVLAFQ 250
Query: 116 GVEIKNRTLVASVVLSHIFISSYTWYMNS---SGLFSVLFIIVFTLFTAMF 163
G + LV VV+ H F++S+ +N S + SVL I + T+F+ F
Sbjct: 251 GYRSRKYHLVVYVVIVH-FLTSFLTLLNQPSKSCIGSVLPISLITIFSVCF 300
>gi|395502617|ref|XP_003755675.1| PREDICTED: gamma-secretase subunit Aph-1b isoform 2 [Sarcophilus
harrisii]
Length = 217
Score = 40.8 bits (94), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 62/151 (41%), Gaps = 36/151 (23%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK---------------KSRGGLQYVSDRNT 45
MT F GCT AFGP +A+++ TI DP++ + +V+ T
Sbjct: 1 MTAAVFFGCTCIAFGPALALYVFTIASDPLRIIFLIAGAFFWLVSLLLSSLIWFVA--VT 58
Query: 46 MDNTYAMAYVSGLG-YGTIS----------AAFSLLNVLDQ----VSGPGTMGLKGESQY 90
+ +T + GL +G + A + LL ++ +S T +
Sbjct: 59 LSSTKDESVQKGLLIFGVLCSVLIQEVFRFAYYRLLKKANKGLMTISQEETSPISIRQLA 118
Query: 91 FGFTTSIFTCCFSLLHVFWSIVFFRGVEIKN 121
+ F T + LLHVFW +VFF E KN
Sbjct: 119 YAFMTLVMV----LLHVFWGVVFFDACETKN 145
>gi|332235873|ref|XP_003267129.1| PREDICTED: gamma-secretase subunit APH-1B isoform 2 [Nomascus
leucogenys]
Length = 216
Score = 40.8 bits (94), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 85/202 (42%), Gaps = 32/202 (15%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK--------------KSRGGLQYVSDRNTM 46
MT F GC AFGP +A+++ TI +P++ L + R
Sbjct: 1 MTAAVFFGCAFIAFGPALALYVFTIATEPLRIIFLIAGAFFWLVSLLISSLVWFMARVIT 60
Query: 47 DNTYAMAYVSGLGYGTISAA-------FSLLNVLDQVS------GPGTMGLKGESQYFGF 93
DN L +G + F+ +L + S PG + F
Sbjct: 61 DNKDGPTQKYLLIFGAFVSVYIQEMFRFAYYRLLKKASEGLKSINPGETAPSMRLLAYAF 120
Query: 94 TTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFSVLFI 153
T + LLHVFW I+FF G E K ++ V+L+H+ +S+ T+ + G+ V
Sbjct: 121 MTLVII----LLHVFWGIIFFDGCEKKKWGILLIVLLTHLLVSAQTFISSYYGINLVSAF 176
Query: 154 IVFTLFTAMFAYKVIGGSKKTM 175
I+ L + +A+ V GGS +++
Sbjct: 177 IILVLMGS-WAFFVAGGSCRSL 197
>gi|328872781|gb|EGG21148.1| gamma-secretase subunit Aph-1 [Dictyostelium fasciculatum]
Length = 281
Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 95 TSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWY-MNSSGLFSVLFI 153
++I C SLLH+ W+++ F+G K LVA V++ H IS T + S SV+ I
Sbjct: 196 SAILALCISLLHIAWNVIAFQGFRSKKYYLVAFVIICHYLISYLTLLNIKKSCEGSVVSI 255
Query: 154 IVFTLFTAMFAYKVIGGSK 172
+ T+ T F ++ + S
Sbjct: 256 GIITILTIAFCFRTLLNSD 274
>gi|426233178|ref|XP_004010594.1| PREDICTED: gamma-secretase subunit APH-1B isoform 2 [Ovis aries]
Length = 216
Score = 40.4 bits (93), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 55/152 (36%), Gaps = 39/152 (25%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK----------------------------- 31
MT F GC AFGP +A+++ TI+ +P++
Sbjct: 1 MTAAVFFGCAFIAFGPALALYIFTIVTEPLRIIFLIIGAFFWLVSLLFSSLIWFTTATLI 60
Query: 32 --KSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
K +Y+ + + Y + A L +++ +M L
Sbjct: 61 GNKDEPREKYLLIFGVLISVLIQEMFRFAYYKLLKKASEGLKIINPYEKAPSMRLLA--- 117
Query: 90 YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKN 121
+ F T + T LLHVFW IVFF G E K
Sbjct: 118 -YAFMTLVIT----LLHVFWGIVFFDGCEKKK 144
>gi|225717170|gb|ACO14431.1| Gamma-secretase subunit Aph-1b [Esox lucius]
Length = 38
Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK 31
MT F GCT AFGP I++FL TI +DP++
Sbjct: 1 MTAAVFFGCTFIAFGPAISLFLFTIARDPLR 31
>gi|300793854|ref|NP_001178332.1| gamma-secretase subunit APH-1B [Bos taurus]
gi|296483247|tpg|DAA25362.1| TPA: anterior pharynx defective 1c homolog isoform 1 [Bos taurus]
Length = 216
Score = 39.3 bits (90), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 83/206 (40%), Gaps = 40/206 (19%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK----------------------------- 31
MT F GC AFGP +A+++ TI+ +P++
Sbjct: 1 MTAAVFFGCAFIAFGPALALYIFTIVTEPLRIIFLIIGAFFWLVSLLFSSLIWFTTATLI 60
Query: 32 --KSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
K +Y+ + + Y + A L ++ +M L
Sbjct: 61 GNKDEPREKYLLIFGVLISVLIQEMFRFAYYKLLKKASEGLKTINPYEKAPSMRLLA--- 117
Query: 90 YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFS 149
+ F T + T LLHVFW IVFF G E K + V+LSH+ +S+ T GL
Sbjct: 118 -YAFMTLVIT----LLHVFWGIVFFDGCEKKKWYTLLVVLLSHLLVSALTLISPHYGLNL 172
Query: 150 VLFIIVFTLFTAMFAYKVIGGSKKTM 175
VL I+ L ++A+ V GGS +++
Sbjct: 173 VLAYIIMVL-MGVWAFFVSGGSCRSL 197
>gi|66828211|ref|XP_647460.1| gamma-secretase subunit Aph-1 [Dictyostelium discoideum AX4]
gi|74859324|sp|Q55FS3.1|APH1_DICDI RecName: Full=Gamma-secretase subunit Aph-1
gi|60475506|gb|EAL73441.1| gamma-secretase subunit Aph-1 [Dictyostelium discoideum AX4]
Length = 328
Score = 38.9 bits (89), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 72/134 (53%), Gaps = 12/134 (8%)
Query: 37 LQYVSDR-NTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTM-GLKGESQYFGFT 94
L+ +S R N ++ A+ SG+ YG I ++L + +GPGT+ S
Sbjct: 185 LETLSARPNHTLSSAAIGVGSGVAYGFIMFG----SILWESTGPGTLFSPACPSVNLFML 240
Query: 95 TSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMN-----SSGLFS 149
+SI T +LLHV ++++ F+G K LVA V+++H F+++Y +N +S + S
Sbjct: 241 SSIITLFMTLLHVVYNVLAFQGYRSKKYHLVAFVIITH-FVTTYLTLLNLPTKTTSCVGS 299
Query: 150 VLFIIVFTLFTAMF 163
+L I + T+F+ F
Sbjct: 300 ILPIGIITVFSVGF 313
>gi|194385174|dbj|BAG60993.1| unnamed protein product [Homo sapiens]
Length = 114
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 6 FLGCTMTAFGPVIAMFLTTIMQDPVK 31
F GCT AFGP A+FL T+ DP++
Sbjct: 6 FFGCTFVAFGPAFALFLITVAGDPLR 31
>gi|302810914|ref|XP_002987147.1| hypothetical protein SELMODRAFT_235206 [Selaginella moellendorffii]
gi|300145044|gb|EFJ11723.1| hypothetical protein SELMODRAFT_235206 [Selaginella moellendorffii]
Length = 239
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 6/115 (5%)
Query: 31 KKSRGGLQYVSDRNTMD-----NTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLK 85
KK L V+ R + +A G G+G + L++L GPGT L+
Sbjct: 89 KKVESSLNGVAVRISKPPLRPSEKIEIAIALGFGHGLAHSIMFCLSLLTPAFGPGTFYLR 148
Query: 86 GESQY-FGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYT 139
Q F S+ + F L+H F ++FF+G E N L V H SS T
Sbjct: 149 SCPQMPFFLVISVISLGFLLIHTFSMVIFFKGYEDHNSGLRFFVPAMHAVASSLT 203
>gi|302788963|ref|XP_002976250.1| hypothetical protein SELMODRAFT_104937 [Selaginella moellendorffii]
gi|300155880|gb|EFJ22510.1| hypothetical protein SELMODRAFT_104937 [Selaginella moellendorffii]
Length = 239
Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 6/115 (5%)
Query: 31 KKSRGGLQYVSDRNTMD-----NTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLK 85
KK L V+ R + +A G G+G + L++L GPGT L+
Sbjct: 89 KKVESSLNGVAVRISKPPLRPSEKIEIAIALGFGHGLAHSIMFCLSLLTPAFGPGTFYLR 148
Query: 86 GESQY-FGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYT 139
Q F S+ + F L+H F ++FF+G E N L V H SS T
Sbjct: 149 SCPQMPFFLVISLISLGFLLIHTFSMVIFFKGYEDHNSGLRFFVPAMHAVASSLT 203
>gi|313233162|emb|CBY24277.1| unnamed protein product [Oikopleura dioica]
Length = 236
Score = 37.0 bits (84), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 54 YVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGE-----SQYFGFTTSIFTCCFSLLHVF 108
+V GLG+GTI+ F +NV+ GPG+ GL+ + S F T++ + + H
Sbjct: 100 FVLGLGFGTIACLFHSMNVMASALGPGSPGLEIDGVSHGSPSFYITSAFLSAALTFNHCA 159
Query: 109 WSIVF 113
W+++
Sbjct: 160 WTVIL 164
>gi|348544995|ref|XP_003459966.1| PREDICTED: otogelin-like [Oreochromis niloticus]
Length = 2530
Score = 37.0 bits (84), Expect = 4.0, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 104 LLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFSVLFIIVFTL 158
LLH+FW +VFF + ++ V ++V+SH+ +S T + N L ++I+F +
Sbjct: 5 LLHMFWGVVFFDDCKKQHWWAVGAIVISHLLVSCLT-FQNLVSLVPT-YVILFLM 57
>gi|257455729|ref|ZP_05620957.1| octopine transport system permease protein OccM [Enhydrobacter
aerosaccus SK60]
gi|257446857|gb|EEV21872.1| octopine transport system permease protein OccM [Enhydrobacter
aerosaccus SK60]
Length = 241
Score = 36.2 bits (82), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 12/82 (14%)
Query: 111 IVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNS----SGLFSVLF---IIVFTLFTAMF 163
I FFRG L+ + L + +S + W S SG+ + F II FTL TA +
Sbjct: 59 IFFFRGTP-----LLVQIFLIYYGLSQFKWVTESVLWKSGVLASPFWCAIIAFTLNTAAY 113
Query: 164 AYKVIGGSKKTMCNGENLIAEA 185
++I G+ K++ GEN A+A
Sbjct: 114 TAEIIRGAIKSIPKGENEAADA 135
>gi|389615444|dbj|BAM20692.1| unknown unsecreted protein [Papilio polytes]
Length = 83
Score = 36.2 bits (82), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 104 LLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFSVLFIIVFTLF--TA 161
LL+ WSI+FF G++ KN + VV SH +S + +N + ++ + + + TA
Sbjct: 3 LLNTXWSIIFFSGLDDKNYMKITWVVGSHFLVSGLS-LLNRNQWYAATILPSYIVLVATA 61
Query: 162 MFAYKVIGGSKK 173
+ A++ GG+ K
Sbjct: 62 VIAFRSAGGTTK 73
>gi|348555587|ref|XP_003463605.1| PREDICTED: gamma-secretase subunit APH-1B-like isoform 1 [Cavia
porcellus]
Length = 216
Score = 36.2 bits (82), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 54/150 (36%), Gaps = 35/150 (23%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK--------------KSRGGLQYVSDRNTM 46
MT F GC AFGP +A+F+ TI P++ L +
Sbjct: 1 MTAAVFFGCAFIAFGPALALFVFTIATKPLRIIFLIAGAFFWLVSLLISSLIWFLATPIT 60
Query: 47 DNTYAMAYVSGLGYGTISA-------AFSLLNVLDQVSGPGTMGLKG--------ESQYF 91
DN L +G + + F+ +L + S GLK Q
Sbjct: 61 DNKDGPTQKFLLIFGVLPSIFIQEMFRFAYYRLLKKASK----GLKSINPDEAAPSMQLL 116
Query: 92 GFTTSIFTCCFSLLHVFWSIVFFRGVEIKN 121
G+ + T LLHVFW IVFF E K
Sbjct: 117 GY--AFMTLAIILLHVFWGIVFFDACEKKK 144
>gi|395822285|ref|XP_003784451.1| PREDICTED: gamma-secretase subunit APH-1B isoform 2 [Otolemur
garnettii]
Length = 216
Score = 35.8 bits (81), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 56/148 (37%), Gaps = 31/148 (20%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK--------------KSRGGLQYVSDRNTM 46
MT F GC AFGP +A+++ TI + ++ L + R
Sbjct: 1 MTAAVFFGCAFIAFGPALALYVFTIANESLRIIFLIAGAFFWLVSLLFSSLVWFVARAIT 60
Query: 47 DNTYAMAYVSGLGYGTISAAF-------SLLNVLDQVS------GPGTMGLKGESQYFGF 93
++ L +G + + F + +L + + PG + + F
Sbjct: 61 ESREEPIQKYLLIFGVLVSVFIQELFRFAYYRLLKKANEGLKTINPGETVPSMQLLAYAF 120
Query: 94 TTSIFTCCFSLLHVFWSIVFFRGVEIKN 121
T + LLHVFW IVFF G E KN
Sbjct: 121 MTLVII----LLHVFWGIVFFDGCEKKN 144
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.327 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,693,014,327
Number of Sequences: 23463169
Number of extensions: 102639950
Number of successful extensions: 325824
Number of sequences better than 100.0: 221
Number of HSP's better than 100.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 325421
Number of HSP's gapped (non-prelim): 373
length of query: 186
length of database: 8,064,228,071
effective HSP length: 134
effective length of query: 52
effective length of database: 9,215,130,721
effective search space: 479186797492
effective search space used: 479186797492
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 72 (32.3 bits)