BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9136
(186 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VQG2|APH1_DROME Gamma-secretase subunit Aph-1 OS=Drosophila melanogaster GN=aph-1
PE=1 SV=1
Length = 238
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 112/231 (48%), Gaps = 58/231 (25%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQD----------------------------PVKK 32
MT EF GCT AFGP A+F+ TI D P+K+
Sbjct: 1 MTLPEFFGCTFIAFGPPFALFVFTIANDPVRIIILIAAAFFWLLSLLISSLWYALIPLKE 60
Query: 33 --------------------------SRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISA 65
+ GL V+ D DN + +AYVSGLG+G IS
Sbjct: 61 FLAFGVVFSVCFQEAFRYIIYRILRSTEQGLHAVAEDTRVTDNKHILAYVSGLGFGIISG 120
Query: 66 AFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLV 125
F+L+NVL +SGPGTMGLKG ++ F T++ LLH FWS++FF + N +
Sbjct: 121 MFALVNVLADMSGPGTMGLKGGTELFFVTSAAQALSIILLHTFWSVIFFNAFDTNNYIHI 180
Query: 126 ASVVLSHIFISSYTWYMNSSGLFSVLFII--VFTLFTAMFAYKVIGGSKKT 174
VV SH+F+S T +N++ L++ +I + T+ T + A++V GG+ ++
Sbjct: 181 GYVVFSHLFVSLIT-LLNANELYTTTLLINYLVTILTGVLAFRVAGGTSRS 230
>sp|Q8JHE9|APH1B_DANRE Gamma-secretase subunit Aph-1b OS=Danio rerio GN=aph1b PE=2 SV=1
Length = 258
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 88/147 (59%), Gaps = 2/147 (1%)
Query: 30 VKKSRGGLQYVSDRNTMD-NTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGES 88
+KK+ GL +S +TM + +AYVSGLG+G +S AFS++N+L GPGT+G+ GES
Sbjct: 94 LKKANEGLLALSQEDTMPISMRQLAYVSGLGFGFMSGAFSVVNILSDSLGPGTVGIHGES 153
Query: 89 QYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLF 148
Q++ +++ T LLH+FW +VFF E + + +VV SH+ +S T ++N
Sbjct: 154 QHYFISSAFMTLAIILLHMFWGVVFFEACERQRWWALGAVVASHLVVSCLT-FVNPHYQG 212
Query: 149 SVLFIIVFTLFTAMFAYKVIGGSKKTM 175
S++ + A++AY GGS + +
Sbjct: 213 SLIPTYIILSVMAVWAYLCAGGSLRNL 239
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK 31
MT F GCT AFGP IA+F+ TI +DP++
Sbjct: 1 MTVAVFFGCTFIAFGPAIALFMFTIARDPLR 31
>sp|Q96BI3|APH1A_HUMAN Gamma-secretase subunit APH-1A OS=Homo sapiens GN=APH1A PE=1 SV=1
Length = 265
Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 90/167 (53%), Gaps = 6/167 (3%)
Query: 14 FGPVIAMFLTTIMQ----DPVKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFS 68
FG +++ L + + +KK+ GL +S D + + MAYVSGL +G IS FS
Sbjct: 74 FGAAVSVLLQEVFRFAYYKLLKKADEGLASLSEDGRSPISIRQMAYVSGLSFGIISGVFS 133
Query: 69 LLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASV 128
++N+L GPG +G+ G+S Y+ T++ T LLH FW +VFF E + + V
Sbjct: 134 VINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFDACERRRYWALGLV 193
Query: 129 VLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTM 175
V SH+ S T ++N S+L I T+ ++A+ GGS +++
Sbjct: 194 VGSHLLTSGLT-FLNPWYEASLLPIYAVTVSMGLWAFITAGGSLRSI 239
Score = 37.7 bits (86), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 6 FLGCTMTAFGPVIAMFLTTIMQDPVK 31
F GCT AFGP A+FL T+ DP++
Sbjct: 6 FFGCTFVAFGPAFALFLITVAGDPLR 31
>sp|Q8BVF7|APH1A_MOUSE Gamma-secretase subunit APH-1A OS=Mus musculus GN=Aph1a PE=2 SV=2
Length = 265
Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 90/167 (53%), Gaps = 6/167 (3%)
Query: 14 FGPVIAMFLTTIMQ----DPVKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFS 68
FG +++ L + + +KK+ GL +S D + + MAYVSGL +G IS FS
Sbjct: 74 FGAAVSVLLQEVFRFAYYKLLKKADEGLASLSEDGRSPISIRQMAYVSGLSFGIISGVFS 133
Query: 69 LLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASV 128
++N+L GPG +G+ G+S Y+ T++ T LLH FW +VFF E + + V
Sbjct: 134 VINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFDACERRRYWALGLV 193
Query: 129 VLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTM 175
V SH+ S T ++N S+L I T+ ++A+ GGS +++
Sbjct: 194 VGSHLLTSGLT-FLNPWYEASLLPIYAVTVSMGLWAFITAGGSLRSI 239
Score = 36.6 bits (83), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 6 FLGCTMTAFGPVIAMFLTTIMQDPVK 31
F GCT AFGP ++FL T+ DP++
Sbjct: 6 FFGCTFVAFGPAFSLFLITVAGDPLR 31
>sp|Q8WW43|APH1B_HUMAN Gamma-secretase subunit APH-1B OS=Homo sapiens GN=APH1B PE=1 SV=3
Length = 257
Score = 80.1 bits (196), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 88/164 (53%), Gaps = 18/164 (10%)
Query: 30 VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
+KK+ GL+ ++ T + +AYVSGLG+G +S FS +N L GPGT+G+ G+S
Sbjct: 94 LKKASEGLKSINPGETAPSMRLLAYVSGLGFGIMSGVFSFVNTLSDSLGPGTVGIHGDSP 153
Query: 90 YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVL------SHIFISSYTWYMN 143
F ++ T LLHVFW IVFF G E K ++ V+L + FISSY + +N
Sbjct: 154 QFFLYSAFMTLVIILLHVFWGIVFFDGCEKKKWGILLIVLLTHLLVSAQTFISSY-YGIN 212
Query: 144 SSGLFSVLFIIVFTLFTAMFAYKVIGGSKKT-----MCNGENLI 182
+ F +L ++ +A+ GGS ++ +C +N +
Sbjct: 213 LASAFIILVLM------GTWAFLAAGGSCRSLKLCLLCQDKNFL 250
Score = 34.3 bits (77), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK 31
MT F GC AFGP +A+++ TI +P++
Sbjct: 1 MTAAVFFGCAFIAFGPALALYVFTIATEPLR 31
>sp|Q5RDM3|APH1B_PONAB Gamma-secretase subunit APH-1B OS=Pongo abelii GN=APH1B PE=2 SV=1
Length = 257
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 55/92 (59%)
Query: 30 VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
+KK+ GL+ ++ T + +AYVSGLG+G +S FS +N L GPGT+G+ G+S
Sbjct: 94 LKKASEGLKSINPGETAPSMRLLAYVSGLGFGIMSGVFSFVNTLSDSLGPGTVGIHGDSP 153
Query: 90 YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKN 121
F ++ T LLHVFW IVFF G E K
Sbjct: 154 QFFLYSAFMTLVIILLHVFWGIVFFDGCEKKK 185
Score = 34.3 bits (77), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK 31
MT F GC AFGP +A+++ TI +P++
Sbjct: 1 MTAAVFFGCAFIAFGPALALYVFTIATEPLR 31
>sp|Q8C7N7|APH1B_MOUSE Gamma-secretase subunit APH-1B OS=Mus musculus GN=Aph1b PE=2 SV=1
Length = 257
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 30 VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
+KK+ GL+ ++ T + +AYVSGLG+G +S FS +N L GPGT+G+ G+S
Sbjct: 94 LKKASEGLKSINPEETAPSMRLLAYVSGLGFGIMSGVFSFVNTLSNSLGPGTVGIHGDSP 153
Query: 90 YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNR 122
F ++ T +LHVFW +VFF G E KN+
Sbjct: 154 QFFLNSAFMTLVVIMLHVFWGVVFFDGCE-KNK 185
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK 31
MT F GC AFGP +A+++ TI DP++
Sbjct: 1 MTAAVFFGCAFIAFGPALALYVFTIATDPLR 31
>sp|Q9DCZ9|APH1C_MOUSE Putative gamma-secretase subunit APH-1C OS=Mus musculus GN=Aph1c
PE=2 SV=1
Length = 258
Score = 74.3 bits (181), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 58/94 (61%), Gaps = 2/94 (2%)
Query: 30 VKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGES 88
+KK+ GL+ ++ + + + +AYVSGLG+G +S FS +N L GPGT+G+ G+S
Sbjct: 94 LKKASEGLKSINPEEDIAPSMRLLAYVSGLGFGIMSGVFSFVNTLSNSLGPGTVGIHGDS 153
Query: 89 QYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNR 122
F ++ T +LHVFW +VFF G E KN+
Sbjct: 154 PQFFLNSAFMTLVVIMLHVFWGVVFFDGCE-KNK 186
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVK 31
MT F GC AFGP A++L TI DP++
Sbjct: 1 MTLPVFFGCAFIAFGPAFALYLFTIATDPLR 31
>sp|O45876|APH1_CAEEL Gamma-secretase subunit aph-1 OS=Caenorhabditis elegans GN=aph-1
PE=1 SV=1
Length = 308
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 80/177 (45%), Gaps = 29/177 (16%)
Query: 30 VKKSRGGLQYVSDRNTM----------DNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGP 79
+KK++ GL ++ + + + + +A V GLG G ISA F +N SGP
Sbjct: 86 LKKAQRGLNKITRQGQISVAPGVSDLHNARHMLALVCGLGMGVISALFYTMNAFAIFSGP 145
Query: 80 GTMGLK-----GE------SQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLV--- 125
GT+GL GE +Y ++ +L HV W+I+ + R
Sbjct: 146 GTIGLPNALKTGEIDTNRAGKYLPLCYTLSAILLTLFHVTWTIMVWDSCHKIGRIPSAFV 205
Query: 126 --ASVVLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAY--KVIGGSKKTMCNG 178
A+ V+SH+ + ++ +NS G ++F + F + AY ++GG+ + NG
Sbjct: 206 PGAAAVVSHLLV-TFLSSLNSRGFHVLVFAVQFLILLICIAYCNVIMGGTISSFVNG 261
>sp|Q55FS3|APH1_DICDI Gamma-secretase subunit Aph-1 OS=Dictyostelium discoideum GN=aph1
PE=3 SV=1
Length = 328
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 72/134 (53%), Gaps = 12/134 (8%)
Query: 37 LQYVSDR-NTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTM-GLKGESQYFGFT 94
L+ +S R N ++ A+ SG+ YG I ++L + +GPGT+ S
Sbjct: 185 LETLSARPNHTLSSAAIGVGSGVAYGFIMFG----SILWESTGPGTLFSPACPSVNLFML 240
Query: 95 TSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMN-----SSGLFS 149
+SI T +LLHV ++++ F+G K LVA V+++H F+++Y +N +S + S
Sbjct: 241 SSIITLFMTLLHVVYNVLAFQGYRSKKYHLVAFVIITH-FVTTYLTLLNLPTKTTSCVGS 299
Query: 150 VLFIIVFTLFTAMF 163
+L I + T+F+ F
Sbjct: 300 ILPIGIITVFSVGF 313
>sp|Q8L9G7|APH1_ARATH Gamma-secretase subunit APH1-like OS=Arabidopsis thaliana
GN=At2g31440 PE=2 SV=2
Length = 250
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 6/99 (6%)
Query: 31 KKSRGGLQYVSDRNT-----MDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLK 85
K+ L +DR + + + +A GLG+G A F L++L GP T ++
Sbjct: 90 KRLEDVLDSFADRISRPRLFLTDKLQIALAGGLGHGVAHAVFFCLSLLTPAFGPATFYVE 149
Query: 86 GESQY-FGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRT 123
S+ F ++I F +H F ++ F G N+
Sbjct: 150 RCSKVPFFLISAIIALAFVTIHTFSMVIAFEGYAKGNKV 188
>sp|Q7S8J1|NTE1_NEUCR Lysophospholipase nte-1 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=nte-1
PE=3 SV=2
Length = 1515
Score = 31.6 bits (70), Expect = 3.4, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 95 TSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFSVLFII 154
TS FT LLH S+++F IK T+ L +IF +S T MN++ L ++ +
Sbjct: 59 TSWFTIILWLLHRISSVLYF---VIKLTTITTPTFLFNIFSTSLTVTMNATTLVLIMLFM 115
Query: 155 V 155
+
Sbjct: 116 M 116
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,694,044
Number of Sequences: 539616
Number of extensions: 2325525
Number of successful extensions: 6717
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 6693
Number of HSP's gapped (non-prelim): 41
length of query: 186
length of database: 191,569,459
effective HSP length: 111
effective length of query: 75
effective length of database: 131,672,083
effective search space: 9875406225
effective search space used: 9875406225
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.6 bits)