RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy9136
         (186 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 42.0 bits (98), Expect = 5e-05
 Identities = 27/225 (12%), Positives = 68/225 (30%), Gaps = 86/225 (38%)

Query: 2   TYMEFLGCTMTAFGPVIAMFLTTIMQDPVKKSR---GGL---QYVSDRNTMDNTYAMAYV 55
           TY   +G          A  L+ +++  +   +    GL   +++ + +   +   +   
Sbjct: 179 TYHVLVG----DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL-- 232

Query: 56  SGLGYGTISAAFSL-LNVLDQVSGPGTMGLKGESQYF------GFTTSIFTCCFSLLHVF 108
                   S   S  L  + Q++            Y       GFT              
Sbjct: 233 --------SIPISCPLIGVIQLA-----------HYVVTAKLLGFTPGELRSYL------ 267

Query: 109 WSIVFFRGVEIKNRTLVASVVLSHIFISSYTW---YMNSSGLFSVLFII---------VF 156
                 +G    ++ LV +V ++     + +W   +++     +VLF I           
Sbjct: 268 ------KGATGHSQGLVTAVAIA----ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT 317

Query: 157 TLF---------------TAMFAYKVIGGSKKTMCNGENLIAEAN 186
           +L                + M +  +   +++ +   ++ + + N
Sbjct: 318 SLPPSILEDSLENNEGVPSPMLS--ISNLTQEQV---QDYVNKTN 357



 Score = 31.2 bits (70), Expect = 0.19
 Identities = 20/112 (17%), Positives = 31/112 (27%), Gaps = 51/112 (45%)

Query: 9    CTMTAFG-PVIAMFLTTIMQDPVKKSRGGLQYVSDRNTMDNTYAMAYVSG--LG-YGTIS 64
             + T F  P  A+ L         KS+G +             A A  +G  LG Y   +
Sbjct: 1726 LSATQFTQP--ALTLMEKAAFEDLKSKGLIP------------ADATFAGHSLGEY---A 1768

Query: 65   AAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRG 116
            A                  L   +      + +             +VF+RG
Sbjct: 1769 A------------------LASLADVMSIESLV------------EVVFYRG 1790


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 30.2 bits (67), Expect = 0.39
 Identities = 23/140 (16%), Positives = 42/140 (30%), Gaps = 27/140 (19%)

Query: 21  FLTT-IMQDPVKKSRGGLQYVSDRNTMDNT---YAMAYVSGLGYGTISAAFSLLNVLDQV 76
           FL + I  +  + S     Y+  R+ + N    +A   VS      +     L   L ++
Sbjct: 93  FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS-----RLQPYLKLRQALLEL 147

Query: 77  -SGPGTM--GLKGESQYFGFTT--------SIFTCCFSLLHVFWSIVFFRGVEIKNRTLV 125
                 +  G+ G     G T             C      +FW  +  +        L 
Sbjct: 148 RPAKNVLIDGVLG----SGKTWVALDVCLSYKVQCKMD-FKIFW--LNLKNCNSPETVLE 200

Query: 126 ASVVLSHIFISSYTWYMNSS 145
               L +    ++T   + S
Sbjct: 201 MLQKLLYQIDPNWTSRSDHS 220


>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
           {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
           c.37.1.20
          Length = 854

 Score = 29.8 bits (68), Expect = 0.59
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 116 GVEIKNRTLVASVVLSHIFIS 136
           GV I +  ++A+  LSH +I+
Sbjct: 353 GVRISDSAIIAAATLSHRYIT 373


>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
           ATP-binding, hydrogen ION transport, hydrolase, ION
           transport; HET: ACP; 3.60A {Arabidopsis thaliana}
          Length = 885

 Score = 26.5 bits (59), Expect = 6.8
 Identities = 12/106 (11%), Positives = 28/106 (26%), Gaps = 17/106 (16%)

Query: 57  GLGYGTISAAFSLLN---VLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVF 113
           G+  G   A  +++             T G++                 S++      V 
Sbjct: 713 GVVLGGYQAIMTVIFFWAAHKTDFFSDTFGVRSIRDNNHELMGAVYLQVSIISQALIFVT 772

Query: 114 FRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFSVLFIIVFTLF 159
                   R+       S  F+      +  + L + L   +  ++
Sbjct: 773 --------RSR------SWSFVERPGALLMIAFLIAQLIATLIAVY 804


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.327    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0671    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,693,812
Number of extensions: 145616
Number of successful extensions: 260
Number of sequences better than 10.0: 1
Number of HSP's gapped: 258
Number of HSP's successfully gapped: 7
Length of query: 186
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 98
Effective length of database: 4,244,745
Effective search space: 415985010
Effective search space used: 415985010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (24.7 bits)