Query psy9139
Match_columns 197
No_of_seqs 150 out of 1547
Neff 11.3
Searched_HMMs 46136
Date Fri Aug 16 19:57:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9139.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9139hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 99.9 6E-22 1.3E-26 158.3 19.9 180 1-183 588-822 (1051)
2 KOG4221|consensus 99.9 2.5E-20 5.5E-25 149.4 18.1 176 1-178 492-713 (1381)
3 KOG4221|consensus 99.8 4.5E-19 9.8E-24 142.4 14.6 184 2-185 393-620 (1381)
4 KOG3513|consensus 99.6 1E-13 2.2E-18 112.0 17.8 177 4-180 688-918 (1051)
5 PF00041 fn3: Fibronectin type 99.5 1E-12 2.2E-17 78.1 10.2 80 30-109 2-84 (85)
6 KOG0196|consensus 99.4 3E-11 6.5E-16 95.1 15.3 152 26-177 330-536 (996)
7 KOG4222|consensus 99.4 2.4E-12 5.2E-17 104.0 8.5 183 2-184 486-749 (1281)
8 KOG0196|consensus 99.1 8.5E-09 1.8E-13 81.7 14.2 93 28-120 444-537 (996)
9 cd00063 FN3 Fibronectin type 3 98.9 1E-07 2.3E-12 56.6 11.2 83 29-111 2-87 (93)
10 KOG4222|consensus 98.6 6.1E-07 1.3E-11 73.8 11.4 31 138-168 583-613 (1281)
11 smart00060 FN3 Fibronectin typ 98.6 2.1E-06 4.6E-11 49.5 9.7 72 33-106 7-82 (83)
12 cd05735 Ig8_DSCAM Eight immuno 98.5 2.8E-07 6.1E-12 54.9 4.6 31 1-31 58-88 (88)
13 KOG4802|consensus 98.3 1.6E-05 3.6E-10 58.8 11.1 132 33-166 152-341 (516)
14 KOG4367|consensus 98.3 2.3E-06 4.9E-11 63.7 6.3 100 27-130 437-539 (699)
15 PF00041 fn3: Fibronectin type 97.9 9.3E-06 2E-10 47.7 2.8 31 138-168 55-85 (85)
16 KOG4194|consensus 97.8 0.00049 1.1E-08 54.2 10.4 109 1-114 585-702 (873)
17 PF09294 Interfer-bind: Interf 97.7 0.00039 8.4E-09 42.8 7.4 88 29-117 4-105 (106)
18 cd05723 Ig4_Neogenin Fourth im 97.6 0.0001 2.2E-09 41.9 3.5 24 1-24 48-71 (71)
19 cd05863 Ig2_VEGFR-3 Second imm 97.6 0.00015 3.4E-09 40.6 3.9 24 1-24 42-65 (67)
20 cd05876 Ig3_L1-CAM Third immun 97.5 0.0002 4.3E-09 40.6 3.9 24 1-24 47-70 (71)
21 PHA02826 IL-1 receptor-like pr 97.5 0.0024 5.1E-08 45.1 9.8 97 1-103 109-210 (227)
22 cd05725 Ig3_Robo Third immunog 97.4 0.0002 4.3E-09 40.3 3.5 24 1-24 46-69 (69)
23 cd05731 Ig3_L1-CAM_like Third 97.4 0.00021 4.5E-09 40.4 3.6 24 1-24 47-70 (71)
24 cd05864 Ig2_VEGFR-2 Second imm 97.4 0.00035 7.6E-09 39.6 3.7 24 1-24 45-68 (70)
25 cd05763 Ig_1 Subgroup of the i 97.3 0.00041 8.9E-09 39.8 3.7 24 1-24 51-74 (75)
26 cd05746 Ig4_Peroxidasin Fourth 97.3 0.00038 8.2E-09 39.2 3.3 22 1-22 47-68 (69)
27 PHA02785 IL-beta-binding prote 97.2 0.0051 1.1E-07 45.9 9.9 102 1-106 93-202 (326)
28 cd05736 Ig2_Follistatin_like S 97.2 0.00077 1.7E-08 38.7 3.9 25 1-25 50-74 (76)
29 PF01108 Tissue_fac: Tissue fa 97.2 0.013 2.9E-07 36.1 9.6 76 29-106 24-104 (107)
30 cd04976 Ig2_VEGFR Second immun 97.2 0.0008 1.7E-08 38.2 3.8 24 1-24 46-69 (71)
31 cd05726 Ig4_Robo Fhird immunog 97.1 0.00091 2E-08 39.8 4.1 27 1-27 58-84 (90)
32 PHA02785 IL-beta-binding prote 97.1 0.029 6.2E-07 42.0 12.4 104 1-106 188-317 (326)
33 KOG4802|consensus 97.1 0.0039 8.4E-08 46.8 7.5 103 5-108 224-341 (516)
34 cd05739 Ig3_RPTP_IIa_LAR_like 97.1 0.00093 2E-08 37.7 3.4 22 1-22 47-68 (69)
35 PF09067 EpoR_lig-bind: Erythr 97.0 0.016 3.6E-07 35.4 9.0 80 26-106 6-95 (104)
36 PF10179 DUF2369: Uncharacteri 96.9 0.04 8.7E-07 40.3 11.2 27 78-104 12-38 (300)
37 cd05738 Ig2_RPTP_IIa_LAR_like 96.9 0.0018 3.8E-08 37.0 3.5 24 1-24 49-73 (74)
38 KOG4194|consensus 96.7 0.027 5.9E-07 44.9 9.9 50 1-50 680-731 (873)
39 cd00063 FN3 Fibronectin type 3 96.7 0.0039 8.4E-08 36.4 4.3 32 138-169 56-87 (93)
40 cd05760 Ig2_PTK7 Second immuno 96.7 0.0025 5.4E-08 36.7 3.2 24 1-24 49-74 (77)
41 cd05771 IgC_Tapasin_R Tapasin- 96.6 0.013 2.8E-07 38.0 6.7 50 1-50 12-63 (139)
42 smart00060 FN3 Fibronectin typ 96.6 0.0046 1E-07 35.0 4.1 26 139-164 57-82 (83)
43 cd05743 Ig_Perlecan_D2_like Im 96.2 0.0049 1.1E-07 35.5 2.7 21 1-21 53-73 (78)
44 PF07495 Y_Y_Y: Y_Y_Y domain; 95.6 0.068 1.5E-06 29.5 5.4 38 123-167 19-56 (66)
45 cd05762 Ig8_MLCK Eighth immuno 95.5 0.28 6.1E-06 29.6 9.4 79 38-116 13-91 (98)
46 cd05748 Ig_Titin_like Immunogl 95.1 0.24 5.2E-06 27.9 6.9 32 77-108 36-67 (74)
47 cd05743 Ig_Perlecan_D2_like Im 95.0 0.33 7.1E-06 27.8 7.5 30 79-108 40-69 (78)
48 KOG4258|consensus 94.9 0.12 2.6E-06 42.9 6.6 74 39-113 841-918 (1025)
49 cd05854 Ig6_Contactin-2 Sixth 94.8 0.33 7.1E-06 28.4 6.9 38 79-116 45-82 (85)
50 PF10179 DUF2369: Uncharacteri 94.8 1.2 2.5E-05 32.9 10.8 26 140-165 261-286 (300)
51 cd05737 Ig_Myomesin_like_C C-t 94.6 0.5 1.1E-05 28.0 7.8 29 80-108 57-85 (92)
52 cd05851 Ig3_Contactin-1 Third 94.3 0.42 9.2E-06 28.1 6.8 69 38-110 14-82 (88)
53 cd04972 Ig_TrkABC_d4 Fourth do 94.3 0.47 1E-05 28.0 6.9 31 79-109 54-84 (90)
54 cd05893 Ig_Palladin_C C-termin 94.2 0.18 4E-06 28.7 4.8 29 82-110 42-70 (75)
55 PLN02533 probable purple acid 94.2 1.3 2.8E-05 34.7 10.7 83 27-120 40-136 (427)
56 PF07495 Y_Y_Y: Y_Y_Y domain; 94.2 0.27 5.7E-06 27.1 5.3 41 66-109 16-56 (66)
57 cd05861 Ig1_PDGFR-alphabeta Fr 94.1 0.11 2.5E-06 30.3 3.9 14 1-14 57-70 (84)
58 cd05740 Ig_CEACAM_D4 Fourth im 94.0 0.73 1.6E-05 27.4 7.3 65 39-107 17-81 (91)
59 cd05857 Ig2_FGFR Second immuno 94.0 0.66 1.4E-05 26.8 7.3 29 80-108 50-78 (85)
60 cd05852 Ig5_Contactin-1 Fifth 94.0 0.51 1.1E-05 26.7 6.4 30 81-110 39-68 (73)
61 cd05892 Ig_Myotilin_C C-termin 94.0 0.32 6.9E-06 27.8 5.5 29 81-109 41-69 (75)
62 cd05730 Ig3_NCAM-1_like Third 93.7 0.81 1.8E-05 27.2 7.2 32 79-110 56-87 (95)
63 cd05894 Ig_C5_MyBP-C C5 immuno 93.5 0.88 1.9E-05 26.7 9.1 31 78-108 49-79 (86)
64 KOG4258|consensus 93.5 0.22 4.7E-06 41.5 5.5 41 26-66 609-650 (1025)
65 cd05870 Ig5_NCAM-2 Fifth immun 93.3 1 2.3E-05 27.0 8.5 30 80-109 63-92 (98)
66 cd05744 Ig_Myotilin_C_like Imm 93.3 0.71 1.5E-05 26.2 6.2 28 81-108 41-68 (75)
67 cd05891 Ig_M-protein_C C-termi 93.3 1 2.2E-05 26.7 7.8 29 81-109 58-86 (92)
68 cd05858 Ig3_FGFR-2 Third immun 93.2 1 2.2E-05 26.5 7.2 32 81-112 55-86 (90)
69 cd05732 Ig5_NCAM-1_like Fifth 92.9 1.2 2.5E-05 26.5 7.2 30 80-109 61-90 (96)
70 cd05866 Ig1_NCAM-2 First immun 92.9 1.2 2.6E-05 26.5 7.4 30 78-107 53-82 (92)
71 cd07702 Ig2_VEGFR-1 Second imm 92.8 0.21 4.6E-06 28.3 3.5 15 1-15 47-61 (72)
72 cd05745 Ig3_Peroxidasin Third 92.7 0.66 1.4E-05 26.1 5.5 29 81-109 40-68 (74)
73 cd05763 Ig_1 Subgroup of the i 92.7 0.55 1.2E-05 26.5 5.2 29 81-109 40-68 (75)
74 cd05747 Ig5_Titin_like M5, fif 92.6 1.3 2.8E-05 26.2 8.8 71 38-108 16-86 (92)
75 cd05760 Ig2_PTK7 Second immuno 92.5 1.2 2.6E-05 25.4 6.9 29 80-108 37-65 (77)
76 cd05736 Ig2_Follistatin_like S 92.3 1.2 2.6E-05 25.1 7.0 34 80-113 38-71 (76)
77 cd05765 Ig_3 Subgroup of the i 92.3 1 2.3E-05 25.6 6.1 28 81-108 47-74 (81)
78 cd05751 Ig1_LILRB1_like First 91.9 1.6 3.5E-05 25.8 7.3 73 39-115 15-88 (91)
79 cd04970 Ig6_Contactin_like Six 91.7 1.6 3.4E-05 25.3 6.8 37 79-115 45-81 (85)
80 cd04978 Ig4_L1-NrCAM_like Four 91.7 1.2 2.5E-05 25.1 5.8 30 80-109 40-69 (76)
81 cd04969 Ig5_Contactin_like Fif 91.4 1.4 3E-05 24.7 5.8 29 81-109 39-67 (73)
82 cd04974 Ig3_FGFR Third immunog 91.2 1.5 3.3E-05 25.8 6.1 33 81-113 55-87 (90)
83 cd05725 Ig3_Robo Third immunog 91.1 0.9 2E-05 25.1 4.8 29 80-108 34-62 (69)
84 COG4733 Phage-related protein, 90.9 1.9 4.1E-05 36.2 7.9 91 78-169 657-787 (952)
85 TIGR00864 PCC polycystin catio 90.8 17 0.00037 35.4 17.3 28 83-111 1662-1689(2740)
86 KOG1948|consensus 90.6 7.2 0.00016 33.2 10.8 22 138-159 945-966 (1165)
87 cd05867 Ig4_L1-CAM_like Fourth 90.4 2 4.4E-05 24.2 6.4 28 80-107 40-67 (76)
88 cd05735 Ig8_DSCAM Eight immuno 90.3 2.4 5.3E-05 24.8 8.6 37 81-117 47-83 (88)
89 KOG4228|consensus 90.2 3.6 7.7E-05 35.7 9.1 107 4-117 1-109 (1087)
90 cd05723 Ig4_Neogenin Fourth im 90.1 1.8 3.9E-05 24.1 5.5 27 83-109 39-65 (71)
91 cd05869 Ig5_NCAM-1 Fifth immun 90.1 2.3 5E-05 25.4 6.3 30 80-109 62-91 (97)
92 KOG3632|consensus 90.1 0.43 9.2E-06 40.5 3.7 125 33-161 584-740 (1335)
93 KOG3515|consensus 90.0 0.59 1.3E-05 38.7 4.5 61 5-66 669-730 (741)
94 cd04968 Ig3_Contactin_like Thi 89.8 2.4 5.2E-05 24.7 6.1 30 80-109 52-81 (88)
95 cd05733 Ig6_L1-CAM_like Sixth 89.8 2.4 5.2E-05 24.1 6.3 28 80-107 38-69 (77)
96 PF07679 I-set: Immunoglobulin 89.5 1.2 2.6E-05 26.0 4.6 31 77-107 52-82 (90)
97 PF09294 Interfer-bind: Interf 89.1 0.64 1.4E-05 28.3 3.3 22 138-159 66-87 (106)
98 cd04975 Ig4_SCFR_like Fourth i 88.9 3.7 8E-05 24.9 6.9 30 80-109 64-93 (101)
99 PHA02633 hypothetical protein; 88.8 0.94 2E-05 24.7 3.3 28 1-28 29-56 (63)
100 cd05853 Ig6_Contactin-4 Sixth 88.6 3.4 7.4E-05 24.2 6.1 37 80-116 46-82 (85)
101 cd05746 Ig4_Peroxidasin Fourth 88.1 1.9 4.2E-05 23.8 4.6 29 81-109 36-64 (69)
102 cd05731 Ig3_L1-CAM_like Third 87.8 1.6 3.5E-05 24.1 4.2 29 80-108 35-63 (71)
103 cd05750 Ig_Pro_neuregulin Immu 87.7 3.3 7.2E-05 23.0 7.0 30 79-108 41-70 (75)
104 KOG4152|consensus 86.7 1.3 2.7E-05 35.2 4.2 33 143-175 651-683 (830)
105 cd05868 Ig4_NrCAM Fourth immun 86.7 4.1 8.9E-05 23.0 6.1 30 81-110 41-70 (76)
106 cd05729 Ig2_FGFR_like Second i 86.4 4.4 9.5E-05 23.1 6.8 27 81-107 51-77 (85)
107 COG4733 Phage-related protein, 86.2 3.8 8.3E-05 34.5 6.8 46 138-187 659-707 (952)
108 cd05865 Ig1_NCAM-1 First immun 86.1 4.4 9.5E-05 24.3 5.6 30 80-109 59-89 (96)
109 cd05876 Ig3_L1-CAM Third immun 85.9 2.2 4.8E-05 23.7 4.1 29 80-108 35-63 (71)
110 cd04977 Ig1_NCAM-1_like First 85.8 5.4 0.00012 23.6 6.4 28 79-106 55-82 (92)
111 cd05874 Ig6_NrCAM Sixth immuno 85.6 4.8 0.0001 22.9 6.4 27 81-107 39-69 (77)
112 TIGR00864 PCC polycystin catio 85.4 40 0.00086 33.2 16.0 105 2-116 1753-1864(2740)
113 cd05885 Ig2_Necl-4 Second immu 85.2 1.5 3.2E-05 25.4 3.1 16 1-16 54-69 (80)
114 cd05863 Ig2_VEGFR-3 Second imm 85.2 3.7 8.1E-05 22.8 4.7 50 121-170 13-62 (67)
115 cd05738 Ig2_RPTP_IIa_LAR_like 84.2 5.5 0.00012 22.3 5.9 27 81-107 38-64 (74)
116 cd05873 Ig_Sema4D_like Immunog 83.9 0.81 1.8E-05 27.0 1.7 13 1-13 59-71 (87)
117 cd04976 Ig2_VEGFR Second immun 82.6 3.8 8.2E-05 22.8 4.1 28 80-107 34-61 (71)
118 cd05728 Ig4_Contactin-2-like F 81.9 5.6 0.00012 23.0 4.8 27 81-107 51-77 (85)
119 cd05773 Ig8_hNephrin_like Eigh 81.7 9.7 0.00021 23.4 10.0 29 81-109 69-98 (109)
120 KOG4228|consensus 81.5 7.3 0.00016 34.0 6.7 128 36-166 173-318 (1087)
121 cd05724 Ig2_Robo Second immuno 81.3 8 0.00017 22.1 7.7 28 80-107 50-77 (86)
122 PF11344 DUF3146: Protein of u 79.8 1.6 3.5E-05 24.7 1.8 14 145-158 66-79 (80)
123 KOG4152|consensus 79.1 13 0.00028 29.9 6.9 32 86-117 652-683 (830)
124 cd05856 Ig2_FGFRL1-like Second 78.8 9.5 0.0002 21.5 5.8 28 80-107 47-74 (82)
125 cd05893 Ig_Palladin_C C-termin 77.9 3.3 7.2E-05 23.5 2.8 31 140-170 42-72 (75)
126 cd05859 Ig4_PDGFR-alpha Fourth 77.7 13 0.00028 22.5 6.3 30 81-110 65-94 (101)
127 KOG0613|consensus 77.3 15 0.00033 32.6 7.4 30 138-167 392-421 (1205)
128 cd05748 Ig_Titin_like Immunogl 77.0 6.8 0.00015 21.8 4.0 33 138-170 39-71 (74)
129 cd05851 Ig3_Contactin-1 Third 76.5 7.2 0.00016 22.8 4.1 33 139-171 53-85 (88)
130 cd05742 Ig1_VEGFR_like First i 76.1 12 0.00027 21.4 5.7 32 80-111 48-79 (84)
131 cd05875 Ig6_hNeurofascin_like 76.1 12 0.00026 21.2 6.4 27 81-107 39-69 (77)
132 cd04971 Ig_TrKABC_d5 Fifth dom 75.2 13 0.00029 21.3 6.2 30 80-109 45-74 (81)
133 cd05726 Ig4_Robo Fhird immunog 74.9 12 0.00026 21.8 4.8 35 140-174 48-82 (90)
134 cd05848 Ig1_Contactin-5 First 74.8 15 0.00033 21.7 7.2 27 81-107 58-85 (94)
135 cd05756 Ig1_IL1R_like First im 74.6 15 0.00033 21.8 5.5 28 80-107 59-86 (94)
136 KOG1948|consensus 74.3 58 0.0013 28.3 9.9 24 79-102 944-967 (1165)
137 COG3401 Fibronectin type 3 dom 74.2 35 0.00077 25.8 12.3 158 5-166 139-333 (343)
138 cd05762 Ig8_MLCK Eighth immuno 74.2 14 0.00029 22.2 5.0 37 138-174 55-91 (98)
139 cd05754 Ig3_Perlecan_like Thir 74.0 14 0.00031 21.1 5.4 66 39-109 15-80 (85)
140 KOG4367|consensus 73.7 0.99 2.2E-05 34.7 -0.1 40 138-177 492-531 (699)
141 PF07353 Uroplakin_II: Uroplak 73.2 8.5 0.00018 25.5 3.9 24 138-161 101-124 (184)
142 PLN02533 probable purple acid 72.5 7.8 0.00017 30.5 4.4 19 139-157 103-121 (427)
143 cd05854 Ig6_Contactin-2 Sixth 71.6 11 0.00024 21.8 4.0 35 139-173 47-81 (85)
144 cd05765 Ig_3 Subgroup of the i 71.5 8.3 0.00018 21.8 3.5 32 139-170 47-78 (81)
145 PF09423 PhoD: PhoD-like phosp 71.2 4.9 0.00011 31.8 3.1 21 138-158 63-83 (453)
146 cd05730 Ig3_NCAM-1_like Third 71.0 14 0.0003 21.7 4.5 32 140-171 59-90 (95)
147 cd05894 Ig_C5_MyBP-C C5 immuno 71.0 11 0.00023 22.0 3.9 31 139-169 52-82 (86)
148 cd04972 Ig_TrkABC_d4 Fourth do 70.8 11 0.00025 21.9 4.0 33 138-170 55-87 (90)
149 cd05764 Ig_2 Subgroup of the i 70.7 16 0.00034 20.2 5.8 26 82-107 41-66 (74)
150 cd04979 Ig_Semaphorin_C Immuno 70.7 18 0.0004 20.9 5.5 25 81-105 51-75 (89)
151 smart00408 IGc2 Immunoglobulin 70.0 13 0.00029 19.0 6.0 27 79-105 37-63 (63)
152 cd05758 Ig5_KIRREL3-like Fifth 69.7 21 0.00045 21.2 8.7 28 81-108 64-92 (98)
153 KOG3515|consensus 69.1 73 0.0016 27.2 9.8 42 1-42 469-512 (741)
154 PHA03042 CD47-like protein; Pr 68.0 7 0.00015 28.4 3.0 22 2-23 82-103 (286)
155 cd05734 Ig7_DSCAM Seventh immu 67.5 14 0.00029 20.9 3.8 27 81-107 44-70 (79)
156 cd05855 Ig_TrkB_d5 Fifth domai 66.9 15 0.00033 21.1 3.8 29 81-109 44-72 (79)
157 TIGR03000 plancto_dom_1 Planct 66.7 11 0.00025 21.5 3.1 26 138-163 28-54 (75)
158 PF07353 Uroplakin_II: Uroplak 66.2 16 0.00034 24.3 4.0 23 81-103 102-124 (184)
159 PF13750 Big_3_3: Bacterial Ig 65.0 11 0.00025 25.0 3.5 29 143-171 116-145 (158)
160 cd05870 Ig5_NCAM-2 Fifth immun 64.5 20 0.00042 21.3 4.2 31 139-169 64-94 (98)
161 cd05858 Ig3_FGFR-2 Third immun 64.4 16 0.00034 21.3 3.7 33 139-171 55-87 (90)
162 KOG4806|consensus 64.2 21 0.00045 27.2 4.8 36 82-117 411-446 (454)
163 PF13754 Big_3_4: Bacterial Ig 63.1 21 0.00045 18.8 5.1 30 138-168 13-42 (54)
164 cd05850 Ig1_Contactin-2 First 62.5 30 0.00065 20.4 7.1 27 81-107 58-85 (94)
165 cd05865 Ig1_NCAM-1 First immun 61.6 21 0.00046 21.3 3.9 33 139-171 60-93 (96)
166 cd05732 Ig5_NCAM-1_like Fifth 59.3 28 0.00061 20.3 4.3 31 139-169 62-92 (96)
167 cd05895 Ig_Pro_neuregulin-1 Im 59.3 29 0.00063 19.3 7.1 30 79-108 42-71 (76)
168 PF14686 fn3_3: Polysaccharide 59.1 13 0.00027 22.4 2.6 20 138-158 49-68 (95)
169 PF04775 Bile_Hydr_Trans: Acyl 59.0 20 0.00043 22.8 3.7 25 139-163 5-29 (126)
170 KOG4806|consensus 58.9 13 0.00028 28.2 3.1 25 138-162 169-193 (454)
171 cd05871 Ig_Semaphorin_classIII 57.3 38 0.00082 19.9 5.1 24 81-104 53-76 (91)
172 PF08329 ChitinaseA_N: Chitina 57.2 13 0.00028 24.0 2.5 29 147-175 80-108 (133)
173 cd05869 Ig5_NCAM-1 Fifth immun 56.6 32 0.0007 20.3 4.2 31 139-169 63-93 (97)
174 PF09240 IL6Ra-bind: Interleuk 56.5 41 0.00089 20.1 11.4 76 33-109 5-89 (99)
175 PF02010 REJ: REJ domain; Int 56.5 14 0.00031 28.9 3.2 27 145-171 268-295 (440)
176 cd07691 Ig_CD3_gamma_delta Imm 56.2 15 0.00034 20.6 2.4 10 2-11 45-54 (69)
177 PF00907 T-box: T-box; InterP 56.0 16 0.00035 24.9 3.1 23 138-160 32-54 (184)
178 TIGR00868 hCaCC calcium-activa 55.7 71 0.0015 27.9 7.1 73 33-106 762-854 (863)
179 PF09423 PhoD: PhoD-like phosp 55.2 20 0.00043 28.4 3.9 22 80-101 63-84 (453)
180 PHA02579 7 baseplate wedge sub 54.8 80 0.0017 27.1 7.0 68 32-104 10-88 (1030)
181 cd05862 Ig1_VEGFR First immuno 54.1 42 0.0009 19.4 7.4 31 80-110 49-79 (86)
182 cd07701 Ig1_Necl-3 First (N-te 47.2 60 0.0013 19.2 7.7 26 79-104 60-85 (95)
183 cd05849 Ig1_Contactin-1 First 47.0 59 0.0013 19.2 7.6 27 81-107 57-84 (93)
184 cd04973 Ig1_FGFR First immunog 47.0 52 0.0011 18.5 7.1 27 81-107 45-71 (79)
185 cd05898 Ig5_KIRREL3 Fifth immu 45.2 68 0.0015 19.3 8.4 31 78-108 61-92 (98)
186 cd02848 Chitinase_N_term Chiti 43.5 77 0.0017 19.6 4.2 23 146-168 76-98 (106)
187 PF14250 AbrB-like: AbrB-like 42.7 26 0.00057 19.7 2.0 14 143-156 50-63 (71)
188 cd05727 Ig2_Contactin-2-like S 42.5 76 0.0017 19.1 5.3 65 38-106 16-85 (96)
189 PF10333 Pga1: GPI-Mannosyltra 41.1 41 0.0009 23.0 3.1 20 138-157 65-84 (180)
190 cd07690 Ig1_CD4 First immunogl 40.6 80 0.0017 18.8 6.9 27 79-105 63-89 (94)
191 cd04967 Ig1_Contactin First Ig 40.5 74 0.0016 18.4 6.6 26 81-106 58-84 (91)
192 cd07693 Ig1_Robo First immunog 39.3 78 0.0017 18.3 8.6 19 89-107 72-90 (100)
193 cd00182 TBOX T-box DNA binding 38.9 50 0.0011 22.8 3.3 23 138-160 34-56 (188)
194 smart00425 TBOX Domain first f 38.3 52 0.0011 22.8 3.3 23 138-160 33-55 (190)
195 KOG1225|consensus 36.7 97 0.0021 25.3 5.0 32 73-104 410-441 (525)
196 cd05861 Ig1_PDGFR-alphabeta Fr 36.3 86 0.0019 17.9 7.8 26 80-105 45-70 (84)
197 PF05345 He_PIG: Putative Ig d 35.9 52 0.0011 16.9 2.4 13 151-163 37-49 (49)
198 PF13927 Ig_3: Immunoglobulin 35.8 47 0.001 17.8 2.5 25 78-102 51-75 (75)
199 KOG1378|consensus 35.4 61 0.0013 25.8 3.6 35 80-119 108-142 (452)
200 COG5475 Uncharacterized small 32.9 49 0.0011 17.6 1.9 14 2-15 28-41 (60)
201 PF12245 Big_3_2: Bacterial Ig 32.8 85 0.0018 16.9 4.0 18 150-167 23-40 (60)
202 cd05722 Ig1_Neogenin First imm 32.3 1.1E+02 0.0023 17.9 7.2 19 89-107 67-86 (95)
203 PF07354 Sp38: Zona-pellucida- 31.7 31 0.00068 25.1 1.5 11 1-11 48-58 (271)
204 PF00801 PKD: PKD domain; Int 31.7 60 0.0013 17.7 2.4 17 147-164 50-66 (69)
205 PF05738 Cna_B: Cna protein B- 31.6 29 0.00063 19.0 1.1 20 138-158 26-45 (70)
206 smart00112 CA Cadherin repeats 31.3 99 0.0021 17.1 4.9 16 149-164 44-59 (79)
207 COG3540 PhoD Phosphodiesterase 30.9 71 0.0015 25.7 3.3 25 138-162 100-124 (522)
208 smart00089 PKD Repeats in poly 28.9 1.1E+02 0.0024 17.0 5.1 17 146-163 52-68 (79)
209 PF13620 CarboxypepD_reg: Carb 28.9 42 0.00091 18.9 1.5 20 138-158 37-56 (82)
210 PHA03189 UL14 tegument protein 28.9 1E+02 0.0022 23.1 3.7 15 2-16 145-159 (348)
211 cd00146 PKD polycystic kidney 28.3 86 0.0019 17.6 2.8 21 146-167 54-74 (81)
212 KOG3834|consensus 27.1 1.8E+02 0.004 23.1 4.8 65 33-98 68-137 (462)
213 PF09430 DUF2012: Protein of u 26.7 86 0.0019 19.8 2.7 21 138-159 29-49 (123)
214 PF14292 SusE: SusE outer memb 24.6 1.9E+02 0.004 18.1 6.3 34 33-66 37-71 (122)
215 cd05749 Ig2_Tyro3_like Second 24.3 1.5E+02 0.0033 16.9 6.9 26 80-107 48-73 (81)
216 TIGR03769 P_ac_wall_RPT actino 24.2 1.1E+02 0.0023 15.2 2.8 13 147-160 11-23 (41)
217 PF02018 CBM_4_9: Carbohydrate 23.9 84 0.0018 19.3 2.4 20 144-163 56-75 (131)
218 PF07198 DUF1410: Protein of u 23.7 83 0.0018 17.1 2.0 17 143-159 42-58 (66)
219 cd02856 Glycogen_debranching_e 23.4 1.4E+02 0.003 18.0 3.2 19 82-100 48-66 (103)
220 cd08544 Reeler Reeler, the N-t 22.9 1.1E+02 0.0024 19.5 2.8 21 38-58 93-113 (135)
221 cd05714 Ig_CSPGs_LP Immunoglob 22.8 1.4E+02 0.0031 17.8 3.1 28 78-105 65-92 (106)
222 KOG3632|consensus 22.8 58 0.0013 28.7 1.7 88 8-103 650-740 (1335)
223 cd05713 Ig_MOG_like Immunoglob 22.7 1.4E+02 0.0031 17.4 3.2 28 79-106 63-90 (100)
224 PF02014 Reeler: Reeler domain 21.9 1.7E+02 0.0036 18.6 3.4 19 40-58 99-117 (132)
225 PF15418 DUF4625: Domain of un 21.5 1.3E+02 0.0029 19.4 2.9 21 145-166 103-123 (132)
226 cd00099 IgV Immunoglobulin var 21.2 1.9E+02 0.0041 16.9 6.2 27 79-105 65-91 (105)
227 cd05711 Ig_FcalphaRI Immunoglo 21.1 1.9E+02 0.0042 17.0 8.3 73 39-115 14-92 (94)
228 cd05845 Ig2_L1-CAM_like Second 20.7 2.1E+02 0.0045 17.2 5.0 62 38-104 16-82 (95)
229 KOG0264|consensus 20.4 3.5E+02 0.0076 21.5 5.2 14 1-14 271-284 (422)
230 KOG3585|consensus 20.3 1.2E+02 0.0027 23.0 2.9 22 138-159 57-78 (328)
No 1
>KOG3513|consensus
Probab=99.90 E-value=6e-22 Score=158.34 Aligned_cols=180 Identities=23% Similarity=0.414 Sum_probs=141.4
Q ss_pred CCeeEEEEEEeCCCCceeEEEEEecCCCCCCE-EEEEeecCCeEEEEeeeCCCCCccccEEEEEEE-eCCCCcEEEEe-C
Q psy9139 1 MVGNYTCLADNIFGKDDIYYQVTILSPPGVPN-ILLQSTTTHSISILWKPSYDGGAIITHYIVSYR-DRTEDWQSVHV-D 77 (197)
Q Consensus 1 ~~g~y~c~a~n~~G~~~~~~~~~~~~~P~~p~-~~~~~~~~~~~~l~W~~~~~~~~~i~~y~v~~~-~~~~~~~~~~~-~ 77 (197)
|+|.|+|+|.....+.++.+.+++..+|+||. +.+...+.+++.|+|+++.|.+++|..|.|+.+ ...+.|..+.. +
T Consensus 588 ~~G~Y~C~aqT~~Ds~s~~A~l~V~gpPgpP~~v~~~~i~~t~~~lsW~~g~dn~SpI~~Y~iq~rt~~~~~W~~v~~vp 667 (1051)
T KOG3513|consen 588 DSGKYTCVAQTALDSASARADLLVRGPPGPPPDVHVDDISDTTARLSWSPGSDNNSPIEKYTIQFRTPFPGKWKAVTTVP 667 (1051)
T ss_pred cCceEEEEEEEeecchhcccceEEecCCCCCCceeEeeeccceEEEEeecCCCCCCCceEEeEEecCCCCCcceEeeECC
Confidence 78999999999999999999999999999998 999999999999999999988899999999999 46778987652 2
Q ss_pred Ccc---cEEEECCCCCCCEEEEEEEEEcCCcCCCCCCce-EeecCCCC--------------------------------
Q psy9139 78 AEY---REFTLTQLKCGTHYKINIKLVNSIGESKPSKTI-AASTKGED-------------------------------- 121 (197)
Q Consensus 78 ~~~---~~~~i~~L~p~~~y~~~v~a~~~~g~~~~s~~~-~~~t~~~~-------------------------------- 121 (197)
... ...++.+|.|+..|+|||.|.|..|.+++|.+. ..+|.++.
T Consensus 668 ~~~~~~~sa~vv~L~Pwv~YeFRV~AvN~iG~gePS~pS~~~rT~ea~P~~~P~nv~g~g~~~~eLvItW~Pl~~~~qNG 747 (1051)
T KOG3513|consen 668 GNITGDESATVVNLSPWVEYEFRVVAVNSIGIGEPSPPSEKVRTPEAAPSVNPSNVKGGGGSPTELVITWEPLPEEEQNG 747 (1051)
T ss_pred CcccCccceeEEccCCCcceEEEEEEEcccccCCCCCCccceecCCCCCccCCccccccCCCCceEEEEeccCCHHHccC
Confidence 222 246788999999999999999999999988764 45665443
Q ss_pred --------------CCCeeecCCCCCcccccceEEEc--CCCCCCeEEEEEEEEcCCCCCCcceEEEEeeeCCCcCCC
Q psy9139 122 --------------QTDWINIPLSNLDEALEMPLVIE--NLLPATRYELTISAKNDAGSTNKNYVFATLSVNGGKAFH 183 (197)
Q Consensus 122 --------------~~~w~~~~~~~~~~~~~~~~~i~--~L~p~t~Y~v~V~a~n~~G~~~~~~~~~t~~~~~~~~~p 183 (197)
...|........ +...|.+. ...|.+.|+++|+|+|..|.|+.+.......-++.|+.+
T Consensus 748 ~gfgY~Vswr~~g~~~~W~~~~v~~~---d~~~~V~~~~st~~~tpyevKVqa~N~~GeGp~s~~~v~~S~Ed~P~~a 822 (1051)
T KOG3513|consen 748 PGFGYRVSWRPQGADKEWKEVIVSNQ---DQPRYVVSNESTEPFTPYEVKVQAINDQGEGPESQVTVGYSGEDEPPVA 822 (1051)
T ss_pred CCceEEEEEEeCCCCcccceeEeccc---CCceEEEcCCCCCCcceeEEEEEEecCCCCCCCCceEEEEcCCCCCCCC
Confidence 123433222211 13344444 556699999999999999999977776666666666443
No 2
>KOG4221|consensus
Probab=99.87 E-value=2.5e-20 Score=149.44 Aligned_cols=176 Identities=22% Similarity=0.312 Sum_probs=139.0
Q ss_pred CCeeEEEE--EEeCCCCceeEEEEEecCCCCCCE-EEEEeecCCeEEEEeeeCCCCCccccEEEEEEEeC-CCCcEEEEe
Q psy9139 1 MVGNYTCL--ADNIFGKDDIYYQVTILSPPGVPN-ILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDR-TEDWQSVHV 76 (197)
Q Consensus 1 ~~g~y~c~--a~n~~G~~~~~~~~~~~~~P~~p~-~~~~~~~~~~~~l~W~~~~~~~~~i~~y~v~~~~~-~~~~~~~~~ 76 (197)
+++.|.|. |.|..|+...+..+.|..+|+.|. +.....+..++.+.|++|.-++++|++|++.+... .+.|. .+
T Consensus 492 p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pEgp~~~~a~ats~~ti~v~WepP~~~n~~I~~yk~~ys~~~~~~~~--~~ 569 (1381)
T KOG4221|consen 492 PLTMYFFRVRAKNEAGSGESSAPLKVTTQPEGPVQLQAYATSPTTILVTWEPPPFGNGPITGYKLFYSEDDTGKEL--RV 569 (1381)
T ss_pred cceeEEEEEeccCcccCCccCCceEEecCCCCCccccccccCcceEEEEecCCCCCCCCceEEEEEEEcCCCCceE--EE
Confidence 35667664 569999999999999999998887 88888899999999999988899999999999843 44444 45
Q ss_pred CCcccEEEECCCCCCCEEEEEEEEEcCCcCCCCCCceEeecCCCC------------------CCCeeecCCCCCc----
Q psy9139 77 DAEYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTKGED------------------QTDWINIPLSNLD---- 134 (197)
Q Consensus 77 ~~~~~~~~i~~L~p~~~y~~~v~a~~~~g~~~~s~~~~~~t~~~~------------------~~~w~~~~~~~~~---- 134 (197)
..+...++|.+|++.+.|.|+|.|.|..|.|..+..+.+.|.... .+.|.........
T Consensus 570 ~~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd~PsaPP~Nl~lev~sStsVrVsW~pP~~~t~ng~it 649 (1381)
T KOG4221|consen 570 ENNATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLSDVPSAPPQNLSLEVVSSTSVRVSWLPPPSETQNGQIT 649 (1381)
T ss_pred ecCccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEeccCCCCCCCcceEEEecCCCeEEEEccCCCcccccceEE
Confidence 566778999999999999999999999999999988888775332 2333322211000
Q ss_pred --------------------ccccceEEEcCCCCCCeEEEEEEEEcCCCCCCcceEEEEeeeCC
Q psy9139 135 --------------------EALEMPLVIENLLPATRYELTISAKNDAGSTNKNYVFATLSVNG 178 (197)
Q Consensus 135 --------------------~~~~~~~~i~~L~p~t~Y~v~V~a~n~~G~~~~~~~~~t~~~~~ 178 (197)
.+....|.+.+|+|++.|.|+|.|.|..|.|+++......|++.
T Consensus 650 gYkIRy~~~~~~~~~~~t~v~~n~~~~l~~~Lep~T~Y~vrIsa~t~nGtGpaS~w~~aeT~~~ 713 (1381)
T KOG4221|consen 650 GYKIRYRKLSREDEVNETVVKGNTTQYLFNGLEPNTQYRVRISAMTVNGTGPASEWVSAETPES 713 (1381)
T ss_pred EEEEEecccCcccccceeecccchhhhHhhcCCCCceEEEEEEEeccCCCCCcccceeccCccc
Confidence 01356788999999999999999999999999877766666543
No 3
>KOG4221|consensus
Probab=99.82 E-value=4.5e-19 Score=142.38 Aligned_cols=184 Identities=21% Similarity=0.311 Sum_probs=144.3
Q ss_pred CeeEEEEEEeCCCCceeEEEEEecCC---------CCCCE-EEEEeecCCeEEEEeeeCCCCCccccEEEEEEEeCCCCc
Q psy9139 2 VGNYTCLADNIFGKDDIYYQVTILSP---------PGVPN-ILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDRTEDW 71 (197)
Q Consensus 2 ~g~y~c~a~n~~G~~~~~~~~~~~~~---------P~~p~-~~~~~~~~~~~~l~W~~~~~~~~~i~~y~v~~~~~~~~~ 71 (197)
.|-|+|++.|..|.....+.+.+... |..|. +.+.....+.+.+.|.+|...+..+..|.+.++.+...|
T Consensus 393 eg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~~~r 472 (1381)
T KOG4221|consen 393 EGFYQCVAENDAGSAQAAAQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTYTVFYKVEGDVR 472 (1381)
T ss_pred chhhhhhhccCcccccchhhheeccCCcccccCccccCCcceecccccceeEEEeecCccccCCCcceEEEEEecCCchh
Confidence 47899999999999888887755543 34444 777778889999999988777778899999999776666
Q ss_pred EEEE-eCCcccEEEECCCCCCCEEEEEEEEEcCCcCCCCCCceEeecCCCC--------------CCCeeecCC------
Q psy9139 72 QSVH-VDAEYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTKGED--------------QTDWINIPL------ 130 (197)
Q Consensus 72 ~~~~-~~~~~~~~~i~~L~p~~~y~~~v~a~~~~g~~~~s~~~~~~t~~~~--------------~~~w~~~~~------ 130 (197)
.... ......+.++.+|.|.+.|.|+|.|.|..|.+..+..+.+.+.+.. .+.|....-
T Consensus 473 er~~~tss~g~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pEgp~~~~a~ats~~ti~v~WepP~~~n~~I~ 552 (1381)
T KOG4221|consen 473 ERLQNTSSPGIQVTVQNLSPLTMYFFRVRAKNEAGSGESSAPLKVTTQPEGPVQLQAYATSPTTILVTWEPPPFGNGPIT 552 (1381)
T ss_pred hhheeccCCceEEEeeecccceeEEEEEeccCcccCCccCCceEEecCCCCCccccccccCcceEEEEecCCCCCCCCce
Confidence 6544 2233378899999999999999999999999999999988876522 233322220
Q ss_pred ------CCC-c------ccccceEEEcCCCCCCeEEEEEEEEcCCCCCCcceEEEEeeeCCCcCCCCC
Q psy9139 131 ------SNL-D------EALEMPLVIENLLPATRYELTISAKNDAGSTNKNYVFATLSVNGGKAFHSW 185 (197)
Q Consensus 131 ------~~~-~------~~~~~~~~i~~L~p~t~Y~v~V~a~n~~G~~~~~~~~~t~~~~~~~~~p~~ 185 (197)
... . +.+...++|.||++.|.|.|+|.|.|.+|.|.++..+.+.++++.|.+|+.
T Consensus 553 ~yk~~ys~~~~~~~~~~~~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd~PsaPP~ 620 (1381)
T KOG4221|consen 553 GYKLFYSEDDTGKELRVENNATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLSDVPSAPPQ 620 (1381)
T ss_pred EEEEEEEcCCCCceEEEecCccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEeccCCCCCCCc
Confidence 000 0 023678999999999999999999999999999999999999999988775
No 4
>KOG3513|consensus
Probab=99.61 E-value=1e-13 Score=112.02 Aligned_cols=177 Identities=17% Similarity=0.261 Sum_probs=123.1
Q ss_pred eEEEEEEeCCCCceeEEE-EEecCCCCC----CE-EEEEeecCCeEEEEeeeCC--CCCccccEEEEEEEe-CCC-CcEE
Q psy9139 4 NYTCLADNIFGKDDIYYQ-VTILSPPGV----PN-ILLQSTTTHSISILWKPSY--DGGAIITHYIVSYRD-RTE-DWQS 73 (197)
Q Consensus 4 ~y~c~a~n~~G~~~~~~~-~~~~~~P~~----p~-~~~~~~~~~~~~l~W~~~~--~~~~~i~~y~v~~~~-~~~-~~~~ 73 (197)
+|+++|.|.+|..+.+.. -.+...+.. |. +.......+.+.+.|++.. .-+++-.+|+|.|+. ... .|..
T Consensus 688 eFRV~AvN~iG~gePS~pS~~~rT~ea~P~~~P~nv~g~g~~~~eLvItW~Pl~~~~qNG~gfgY~Vswr~~g~~~~W~~ 767 (1051)
T KOG3513|consen 688 EFRVVAVNSIGIGEPSPPSEKVRTPEAAPSVNPSNVKGGGGSPTELVITWEPLPEEEQNGPGFGYRVSWRPQGADKEWKE 767 (1051)
T ss_pred EEEEEEEcccccCCCCCCccceecCCCCCccCCccccccCCCCceEEEEeccCCHHHccCCCceEEEEEEeCCCCcccce
Confidence 588999999997655442 244444444 43 6666777899999999943 445667899999993 333 7987
Q ss_pred EEeC-CcccEEEE--CCCCCCCEEEEEEEEEcCCcCCCCCCceEeecCC-CC-----------------CCCeeecCC--
Q psy9139 74 VHVD-AEYREFTL--TQLKCGTHYKINIKLVNSIGESKPSKTIAASTKG-ED-----------------QTDWINIPL-- 130 (197)
Q Consensus 74 ~~~~-~~~~~~~i--~~L~p~~~y~~~v~a~~~~g~~~~s~~~~~~t~~-~~-----------------~~~w~~~~~-- 130 (197)
..+. .+...+.+ ....|.+.|.+.|.+.|..|.|+.+....+.+.. .| ...|.....
T Consensus 768 ~~v~~~d~~~~V~~~~st~~~tpyevKVqa~N~~GeGp~s~~~v~~S~Ed~P~~ap~~~~~~~~s~s~~~v~W~~~~~~n 847 (1051)
T KOG3513|consen 768 VIVSNQDQPRYVVSNESTEPFTPYEVKVQAINDQGEGPESQVTVGYSGEDEPPVAPTKLSAKPLSSSEVNLSWKPPLWDN 847 (1051)
T ss_pred eEecccCCceEEEcCCCCCCcceeEEEEEEecCCCCCCCCceEEEEcCCCCCCCCCccceeecccCceEEEEecCcCccC
Confidence 7654 34455555 4477899999999999999999877665544322 22 334422111
Q ss_pred ---------------C------CCcccccceEEEcCCCCCCeEEEEEEEEcCCCCCCcceEEEEeeeCCCc
Q psy9139 131 ---------------S------NLDEALEMPLVIENLLPATRYELTISAKNDAGSTNKNYVFATLSVNGGK 180 (197)
Q Consensus 131 ---------------~------~~~~~~~~~~~i~~L~p~t~Y~v~V~a~n~~G~~~~~~~~~t~~~~~~~ 180 (197)
. .....+.....|.||++.|.|+|.|+|+|.+|.|+.+..+.+.+....+
T Consensus 848 G~l~gY~v~Y~~~~~~~~~~~~~~i~~~~~~~~ltgL~~~T~Y~~~vrA~nsaG~Gp~s~~~~~tt~k~pP 918 (1051)
T KOG3513|consen 848 GKLTGYEVKYWKINEKEGSLSRVQIAGNRTSWRLTGLEPNTKYRFYVRAYTSAGGGPASSEENVTTKKAPP 918 (1051)
T ss_pred CccceeEEEEEEcCCCcccccceeecCCcceEeeeCCCCCceEEEEEEEecCCCCCCCccceeccccCCCC
Confidence 0 0001346789999999999999999999999999988888776544433
No 5
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=99.48 E-value=1e-12 Score=78.05 Aligned_cols=80 Identities=35% Similarity=0.659 Sum_probs=67.3
Q ss_pred CCE-EEEEeecCCeEEEEeeeCCCCCccccEEEEEEEeCCCC--cEEEEeCCcccEEEECCCCCCCEEEEEEEEEcCCcC
Q psy9139 30 VPN-ILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDRTED--WQSVHVDAEYREFTLTQLKCGTHYKINIKLVNSIGE 106 (197)
Q Consensus 30 ~p~-~~~~~~~~~~~~l~W~~~~~~~~~i~~y~v~~~~~~~~--~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~~~~g~ 106 (197)
+|. +.+...+.+++.|.|.++...++.+.+|.|+|+..... +....+......+++.+|.|++.|.|+|+|.+..|.
T Consensus 2 ~P~~l~v~~~~~~sv~v~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~~~~g~ 81 (85)
T PF00041_consen 2 APENLSVSNISPTSVTVSWKPPSSGNGPITGYRVEYRSVNSTSDWQEVTVPGNETSYTITGLQPGTTYEFRVRAVNSDGE 81 (85)
T ss_dssp SSEEEEEEEECSSEEEEEEEESSSTSSSESEEEEEEEETTSSSEEEEEEEETTSSEEEEESCCTTSEEEEEEEEEETTEE
T ss_pred cCcCeEEEECCCCEEEEEEECCCCCCCCeeEEEEEEEecccceeeeeeeeeeeeeeeeeccCCCCCEEEEEEEEEeCCcC
Confidence 455 88888999999999999876677899999999954333 666667777779999999999999999999999987
Q ss_pred CCC
Q psy9139 107 SKP 109 (197)
Q Consensus 107 ~~~ 109 (197)
|.+
T Consensus 82 g~~ 84 (85)
T PF00041_consen 82 GPP 84 (85)
T ss_dssp EEE
T ss_pred cCC
Confidence 754
No 6
>KOG0196|consensus
Probab=99.39 E-value=3e-11 Score=95.06 Aligned_cols=152 Identities=19% Similarity=0.300 Sum_probs=96.9
Q ss_pred CCCCCCEEEEEeecCCeEEEEeeeCCCCC-ccccEEEEEEEeCC---CCcE---------EEEeCCcccEEEECCCCCCC
Q psy9139 26 SPPGVPNILLQSTTTHSISILWKPSYDGG-AIITHYIVSYRDRT---EDWQ---------SVHVDAEYREFTLTQLKCGT 92 (197)
Q Consensus 26 ~~P~~p~~~~~~~~~~~~~l~W~~~~~~~-~~i~~y~v~~~~~~---~~~~---------~~~~~~~~~~~~i~~L~p~~ 92 (197)
.||++|...+..+..+++.|.|.+|.+.+ ..-..|.+..+.-. +.-. .-+..-..+..++.+|.|.+
T Consensus 330 ~PPSaP~nlis~vn~Ts~~L~W~~P~d~GGR~Di~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~q~gLt~~~V~v~~L~ah~ 409 (996)
T KOG0196|consen 330 RPPSAPRNLISNVNGTSLILEWSPPADTGGREDITYNVICKKCGGGRGACEPCGDNVRFTPRQRGLTETSVTVSDLLAHT 409 (996)
T ss_pred CCCCccceeeeecccceEEEEecCCcccCCCcceEEEEEeeccCCCCCccccCCCCceECCCCCCcccceEEEecccccc
Confidence 56788874444589999999999997444 34344666655211 1101 11123456789999999999
Q ss_pred EEEEEEEEEcCCcCCCCC----CceEeecCCCC-----------------CCCeeecCCCC---------------Cc--
Q psy9139 93 HYKINIKLVNSIGESKPS----KTIAASTKGED-----------------QTDWINIPLSN---------------LD-- 134 (197)
Q Consensus 93 ~y~~~v~a~~~~g~~~~s----~~~~~~t~~~~-----------------~~~w~~~~~~~---------------~~-- 134 (197)
.|+|.|.|.|....-.+. ..+.++|..+. ...|....... ..
T Consensus 410 ~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps~V~~~r~~~~~~~sitlsW~~p~~png~ildYEvky~ek~~~e~~ 489 (996)
T KOG0196|consen 410 NYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPSPVSVLRQVSRTSDSITLSWSEPDQPNGVILDYEVKYYEKDEDERS 489 (996)
T ss_pred ccEEEEEEeecccccCCCCCcceeEEeeccccCCCccceEEEeeeccCceEEecCCCCCCCCcceeEEEEEeeccccccc
Confidence 999999999987543222 23445553322 23333222110 00
Q ss_pred ----ccccceEEEcCCCCCCeEEEEEEEEcCCCCCCcceEEEEeeeC
Q psy9139 135 ----EALEMPLVIENLLPATRYELTISAKNDAGSTNKNYVFATLSVN 177 (197)
Q Consensus 135 ----~~~~~~~~i~~L~p~t~Y~v~V~a~n~~G~~~~~~~~~t~~~~ 177 (197)
....+..++.+|+|++.|.|+|+|.+.+|.|..+..+-..|..
T Consensus 490 ~~~~~t~~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~~ 536 (996)
T KOG0196|consen 490 YSTLKTKTTTATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTLP 536 (996)
T ss_pred eeEEecccceEEeeccCCCcEEEEEEEEecccCCCCCCCceeeeecC
Confidence 0125578999999999999999999999999966555444443
No 7
>KOG4222|consensus
Probab=99.37 E-value=2.4e-12 Score=104.03 Aligned_cols=183 Identities=21% Similarity=0.341 Sum_probs=127.8
Q ss_pred CeeEEEEEEeCCCCceeEEEEEec---------------CCCCCCE-EEEEeecCCeEEEEeeeCCC-CCccccEEEEEE
Q psy9139 2 VGNYTCLADNIFGKDDIYYQVTIL---------------SPPGVPN-ILLQSTTTHSISILWKPSYD-GGAIITHYIVSY 64 (197)
Q Consensus 2 ~g~y~c~a~n~~G~~~~~~~~~~~---------------~~P~~p~-~~~~~~~~~~~~l~W~~~~~-~~~~i~~y~v~~ 64 (197)
.|.|+|.|.+..|+..-++.+.+. ..|.+|. ..+..++.+++.|+|.+... +..++.+|++++
T Consensus 486 tG~YTc~as~~~ges~wSatl~v~~~~~s~q~~r~~D~S~~pS~p~~p~v~~v~~~~v~LsW~~~s~sg~vP~s~yiiea 565 (1281)
T KOG4222|consen 486 TGRYTCIASDESGESTWSATLTVEKAGSSQQFCRCEDPSALPSPPGTPGVVNVSRTSVTLSWQPTSPSGAVPASGYIIEA 565 (1281)
T ss_pred CcceeeeccCcccccccceeeEhhhcCcccccccCCChhhCCCCCCCCccccCCCceEEecccCCCCCCccccchhHHHH
Confidence 699999999999988777777664 2245554 66778889999999999764 556788999987
Q ss_pred E--eCCCCcEEEEeCCcccEEEECCCCCCCEEEEEEEEEcCCcCCCCCCce-EeecCCCC--------------------
Q psy9139 65 R--DRTEDWQSVHVDAEYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTI-AASTKGED-------------------- 121 (197)
Q Consensus 65 ~--~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~~~~g~~~~s~~~-~~~t~~~~-------------------- 121 (197)
. +....|...--....+.+.|.+|+|+..|.|.|++.|..|.+.++... .+++.++.
T Consensus 566 fs~~~~etw~~ta~~v~~t~~~I~gL~P~~sylf~vRa~n~~Gis~Ps~~S~~vrta~a~~~~a~ad~~k~~~~ls~~l~ 645 (1281)
T KOG4222|consen 566 FSPDLGETWQTTAGRVKTTTYAIRGLKPNLSYLFLVRAENEQGISDPSTSSDPVRTAPADAAAAGADHQKVQRELSNELL 645 (1281)
T ss_pred hhhhhcccccccccccccceeeecCcCccceeeeeeeccccccccCCcccCCccccCCCChhhhhhhHHHHHHhhcccce
Confidence 6 456678766555667789999999999999999999999987765432 23333322
Q ss_pred -------------CCCe------------------eecCCCCCc----c---cccceEEEcCCCCCCeEEEEEEEEcCCC
Q psy9139 122 -------------QTDW------------------INIPLSNLD----E---ALEMPLVIENLLPATRYELTISAKNDAG 163 (197)
Q Consensus 122 -------------~~~w------------------~~~~~~~~~----~---~~~~~~~i~~L~p~t~Y~v~V~a~n~~G 163 (197)
...| ......... . .-...+.+.+|+|++.|+|.++-+-..|
T Consensus 646 ~l~~~~~L~asslr~~w~~~kq~~~~~i~g~~I~~r~~~~~~a~~s~~~v~~~t~~s~v~~nl~p~t~ye~f~~Pf~~~~ 725 (1281)
T KOG4222|consen 646 RLSNPNVLNASSLRLGWTKDKQHGSQYIQGYRISYRSLGSQLAQWSNAGVTVPTPESVVVPNLKPGTNYEFFVRPFFPHG 725 (1281)
T ss_pred eeccccccchhheeeeeeeecccCcccccceEEEeccCccccccccccceeccCCcceeccccCCCccceeeccCccCCC
Confidence 1222 221110000 0 1145689999999999999999987655
Q ss_pred C---CCcceEEEEeeeCCCcCCCC
Q psy9139 164 S---TNKNYVFATLSVNGGKAFHS 184 (197)
Q Consensus 164 ~---~~~~~~~~t~~~~~~~~~p~ 184 (197)
. +..+......+++..|.+|+
T Consensus 726 ~s~~g~pS~sk~alt~e~~PSapp 749 (1281)
T KOG4222|consen 726 YSIQGAPSNSKTALTLEEPPSAPP 749 (1281)
T ss_pred cceecCCcccccccccccCCCCCC
Confidence 4 33454455566666665544
No 8
>KOG0196|consensus
Probab=99.07 E-value=8.5e-09 Score=81.71 Aligned_cols=93 Identities=22% Similarity=0.276 Sum_probs=75.0
Q ss_pred CCCCEEEEEeecCCeEEEEeeeCCCCCccccEEEEEEEeCC-CCcEEEEeCCcccEEEECCCCCCCEEEEEEEEEcCCcC
Q psy9139 28 PGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDRT-EDWQSVHVDAEYREFTLTQLKCGTHYKINIKLVNSIGE 106 (197)
Q Consensus 28 P~~p~~~~~~~~~~~~~l~W~~~~~~~~~i~~y~v~~~~~~-~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~~~~g~ 106 (197)
+..+.++....+.++++|+|..|..+++.|..|.|.|.... .......+....+..++.+|.|++.|.|+|+|....|.
T Consensus 444 s~V~~~r~~~~~~~sitlsW~~p~~png~ildYEvky~ek~~~e~~~~~~~t~~~~~ti~gL~p~t~YvfqVRarT~aG~ 523 (996)
T KOG0196|consen 444 SPVSVLRQVSRTSDSITLSWSEPDQPNGVILDYEVKYYEKDEDERSYSTLKTKTTTATITGLKPGTVYVFQVRARTAAGY 523 (996)
T ss_pred CccceEEEeeeccCceEEecCCCCCCCCcceeEEEEEeeccccccceeEEecccceEEeeccCCCcEEEEEEEEecccCC
Confidence 33344888999999999999999888888999999998432 22222234556678999999999999999999999999
Q ss_pred CCCCCceEeecCCC
Q psy9139 107 SKPSKTIAASTKGE 120 (197)
Q Consensus 107 ~~~s~~~~~~t~~~ 120 (197)
|..|....+.|...
T Consensus 524 G~~S~~~~fqT~~~ 537 (996)
T KOG0196|consen 524 GPYSGKHEFQTLPS 537 (996)
T ss_pred CCCCCceeeeecCc
Confidence 99999888887665
No 9
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=98.88 E-value=1e-07 Score=56.63 Aligned_cols=83 Identities=39% Similarity=0.728 Sum_probs=61.9
Q ss_pred CCCE-EEEEeecCCeEEEEeeeCCCCCccccEEEEEEEeC-CCCcEEEEeC-CcccEEEECCCCCCCEEEEEEEEEcCCc
Q psy9139 29 GVPN-ILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDR-TEDWQSVHVD-AEYREFTLTQLKCGTHYKINIKLVNSIG 105 (197)
Q Consensus 29 ~~p~-~~~~~~~~~~~~l~W~~~~~~~~~i~~y~v~~~~~-~~~~~~~~~~-~~~~~~~i~~L~p~~~y~~~v~a~~~~g 105 (197)
.+|. +.+......++.|.|.++......+..|.+.+... ...|..+... .....+.+.+|.|++.|.++|.+.+..|
T Consensus 2 ~~p~~~~~~~~~~~~~~v~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~p~~~Y~~~v~a~~~~~ 81 (93)
T cd00063 2 SPPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGGG 81 (93)
T ss_pred cCCCCcEEEEecCCEEEEEECCCCCCCCcceeEEEEEeeCCCCCCEEeeccCCcccEEEEccccCCCEEEEEEEEECCCc
Confidence 3444 66666678999999999764334567899998843 3566655533 3677899999999999999999998877
Q ss_pred CCCCCC
Q psy9139 106 ESKPSK 111 (197)
Q Consensus 106 ~~~~s~ 111 (197)
.+.++.
T Consensus 82 ~~~~s~ 87 (93)
T cd00063 82 ESPPSE 87 (93)
T ss_pred cCCCcc
Confidence 776554
No 10
>KOG4222|consensus
Probab=98.63 E-value=6.1e-07 Score=73.80 Aligned_cols=31 Identities=23% Similarity=0.424 Sum_probs=27.9
Q ss_pred cceEEEcCCCCCCeEEEEEEEEcCCCCCCcc
Q psy9139 138 EMPLVIENLLPATRYELTISAKNDAGSTNKN 168 (197)
Q Consensus 138 ~~~~~i~~L~p~t~Y~v~V~a~n~~G~~~~~ 168 (197)
...+.|.+|+|...|.|.|+|.|..|.+.++
T Consensus 583 ~t~~~I~gL~P~~sylf~vRa~n~~Gis~Ps 613 (1281)
T KOG4222|consen 583 TTTYAIRGLKPNLSYLFLVRAENEQGISDPS 613 (1281)
T ss_pred cceeeecCcCccceeeeeeeccccccccCCc
Confidence 5679999999999999999999999987743
No 11
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=98.56 E-value=2.1e-06 Score=49.50 Aligned_cols=72 Identities=38% Similarity=0.706 Sum_probs=50.3
Q ss_pred EEEEeecCCeEEEEeeeCCCCCccccEEEEEEEe----CCCCcEEEEeCCcccEEEECCCCCCCEEEEEEEEEcCCcC
Q psy9139 33 ILLQSTTTHSISILWKPSYDGGAIITHYIVSYRD----RTEDWQSVHVDAEYREFTLTQLKCGTHYKINIKLVNSIGE 106 (197)
Q Consensus 33 ~~~~~~~~~~~~l~W~~~~~~~~~i~~y~v~~~~----~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~~~~g~ 106 (197)
+.+......++.+.|.++..... .+|.+.+.. ....|...........+.+.+|.|++.|.++|.+.+..|.
T Consensus 7 ~~~~~~~~~~~~v~W~~~~~~~~--~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~v~v~a~~~~g~ 82 (83)
T smart00060 7 LRVTDVTSTSVTLSWEPPPDDGI--TGYIVGYRVEYREEGSSWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVNGAGE 82 (83)
T ss_pred EEEEEEeCCEEEEEECCCCCCCC--CccEEEEEEEEecCCCccEEEEecCCccEEEEeCcCCCCEEEEEEEEEcccCC
Confidence 56666666799999997653322 557776652 1123555544444678999999999999999999987553
No 12
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.48 E-value=2.8e-07 Score=54.92 Aligned_cols=31 Identities=35% Similarity=0.619 Sum_probs=29.3
Q ss_pred CCeeEEEEEEeCCCCceeEEEEEecCCCCCC
Q psy9139 1 MVGNYTCLADNIFGKDDIYYQVTILSPPGVP 31 (197)
Q Consensus 1 ~~g~y~c~a~n~~G~~~~~~~~~~~~~P~~p 31 (197)
+.|.|+|.|.|..|+....+.|.+..+|.+|
T Consensus 58 D~G~YtC~A~N~~G~~~~~~~L~V~~~P~~P 88 (88)
T cd05735 58 DSGFFSCHAINSYGEDRGIIQLTVQEPPDPP 88 (88)
T ss_pred cCEEEEEEEEcCCCcceEEEEEEEeCCCCCC
Confidence 5799999999999999999999999999987
No 13
>KOG4802|consensus
Probab=98.32 E-value=1.6e-05 Score=58.85 Aligned_cols=132 Identities=23% Similarity=0.324 Sum_probs=82.7
Q ss_pred EEEEeecCCeEEEEeeeCCCCCccccEEE----EEEE-------eCCCCcEEEEeCCcccEEEECCCCCCCEEEEEEEEE
Q psy9139 33 ILLQSTTTHSISILWKPSYDGGAIITHYI----VSYR-------DRTEDWQSVHVDAEYREFTLTQLKCGTHYKINIKLV 101 (197)
Q Consensus 33 ~~~~~~~~~~~~l~W~~~~~~~~~i~~y~----v~~~-------~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~ 101 (197)
+........++.+.|..... .-+..+. ..|. .....|+.+......+.+..+++.||..|+|+|.|.
T Consensus 152 ~~y~r~~~g~~av~w~~~~~--~~v~~~~~~vr~~w~~g~hase~~~thwQtv~~t~~e~~~~~t~~rPgRwyefrvaav 229 (516)
T KOG4802|consen 152 ILYFRRSRGSHAVDWKIESS--LLVYYVHVEVRSHWGRGFHASELGPTHWQTVEKTMEENTYIFTDMRPGRWYEFRVAAV 229 (516)
T ss_pred hhhhhhccCceeeeeeeccc--cceeeeehhhhhhhcccccccccccccceeeeecCCCceeeeeecCcceeEEEEEeee
Confidence 55555667778999987542 1122111 1222 123457777777777789999999999999999999
Q ss_pred cCCcC---CCCCCceEeecC----CCC--------------------------------CCCeeecCCCC--------Cc
Q psy9139 102 NSIGE---SKPSKTIAASTK----GED--------------------------------QTDWINIPLSN--------LD 134 (197)
Q Consensus 102 ~~~g~---~~~s~~~~~~t~----~~~--------------------------------~~~w~~~~~~~--------~~ 134 (197)
|..|. +.++........ +.| .+.|....+.. .-
T Consensus 230 n~~G~rGFs~PSkpf~ssk~pkaPp~P~dl~l~~v~~dG~~~~~v~w~P~~sdlPv~~Yki~Ws~~v~s~k~~m~tks~~ 309 (516)
T KOG4802|consen 230 NAYGFRGFSEPSKPFPSSKNPKAPPSPNDLKLIGVQFDGRYMLKVVWCPSKSDLPVEKYKITWSLYVNSAKASMITKSSY 309 (516)
T ss_pred ecccccccCCCCCCCCCCCCCCCCcCcccceeeeeeecceEEEEEEeCCCCCCCcceeeEEEeehhhhhhhhhcccccce
Confidence 87765 455554433322 122 23333222100 00
Q ss_pred ccccceEEEcCCCCCCeEEEEEEEEcCCCCCC
Q psy9139 135 EALEMPLVIENLLPATRYELTISAKNDAGSTN 166 (197)
Q Consensus 135 ~~~~~~~~i~~L~p~t~Y~v~V~a~n~~G~~~ 166 (197)
.-+...+.|++|.|+..|.|.|+|....|.+.
T Consensus 310 ~k~thq~si~~L~Pns~Y~VevqAi~y~g~~r 341 (516)
T KOG4802|consen 310 VKDTHQFSIKELLPNSSYYVEVQAISYLGSRR 341 (516)
T ss_pred eeccchhhhhhcCCCCeEEEEEEEEEeccCcc
Confidence 00122456999999999999999999999876
No 14
>KOG4367|consensus
Probab=98.29 E-value=2.3e-06 Score=63.69 Aligned_cols=100 Identities=23% Similarity=0.353 Sum_probs=78.0
Q ss_pred CCCCCEEEEEe--ecCCeEEEEeeeCCCCCccccEEEEEEEeC-CCCcEEEEeCCcccEEEECCCCCCCEEEEEEEEEcC
Q psy9139 27 PPGVPNILLQS--TTTHSISILWKPSYDGGAIITHYIVSYRDR-TEDWQSVHVDAEYREFTLTQLKCGTHYKINIKLVNS 103 (197)
Q Consensus 27 ~P~~p~~~~~~--~~~~~~~l~W~~~~~~~~~i~~y~v~~~~~-~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~~~ 103 (197)
.|..|-+.... ...+++++.|+.|...+.++.+|.++..+. ++.+.++. .+..+.+++.+|.-++.|.-||.+.|.
T Consensus 437 vpatpilq~~ec~t~nns~t~~wkqp~~~~~~~dg~~leld~g~~g~frevy-~g~etmctvdglhfns~y~arvka~n~ 515 (699)
T KOG4367|consen 437 VPATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELDDGNGGQFREVY-VGKETMCTVDGLHFNSTYNARVKAFNK 515 (699)
T ss_pred CCCCceeehhhhhccCCceEEEeecCCCCCCCCcceEEEeecCCCCceeEEE-ecCceeEEecceecchhHHHHHHHhhc
Confidence 45555444333 457899999997665567889999999854 45566555 566788999999999999999999999
Q ss_pred CcCCCCCCceEeecCCCCCCCeeecCC
Q psy9139 104 IGESKPSKTIAASTKGEDQTDWINIPL 130 (197)
Q Consensus 104 ~g~~~~s~~~~~~t~~~~~~~w~~~~~ 130 (197)
.|.+++++.+..+|. .+.|.....
T Consensus 516 tg~s~ys~tl~lqts---~vawfqlt~ 539 (699)
T KOG4367|consen 516 TGVSPYSKTLVLQTS---EVAWFQLTP 539 (699)
T ss_pred cCCCcccceeEeeec---ceeeeeccC
Confidence 999999999888775 566766554
No 15
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=97.92 E-value=9.3e-06 Score=47.71 Aligned_cols=31 Identities=32% Similarity=0.500 Sum_probs=27.4
Q ss_pred cceEEEcCCCCCCeEEEEEEEEcCCCCCCcc
Q psy9139 138 EMPLVIENLLPATRYELTISAKNDAGSTNKN 168 (197)
Q Consensus 138 ~~~~~i~~L~p~t~Y~v~V~a~n~~G~~~~~ 168 (197)
...++|.+|+|++.|.|+|+|.|..|.|++|
T Consensus 55 ~~~~~i~~L~p~t~Y~~~v~a~~~~g~g~~S 85 (85)
T PF00041_consen 55 ETSYTITGLQPGTTYEFRVRAVNSDGEGPPS 85 (85)
T ss_dssp SSEEEEESCCTTSEEEEEEEEEETTEEEEEE
T ss_pred eeeeeeccCCCCCEEEEEEEEEeCCcCcCCC
Confidence 3379999999999999999999999987653
No 16
>KOG4194|consensus
Probab=97.77 E-value=0.00049 Score=54.21 Aligned_cols=109 Identities=18% Similarity=0.234 Sum_probs=73.2
Q ss_pred CCeeEEEEEEeCCCC-ceeEEEEEecCCCCCCE--EEEEeecCCeEEEEeeeCCCCCccccEEEEEEEeCCC-CcE----
Q psy9139 1 MVGNYTCLADNIFGK-DDIYYQVTILSPPGVPN--ILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDRTE-DWQ---- 72 (197)
Q Consensus 1 ~~g~y~c~a~n~~G~-~~~~~~~~~~~~P~~p~--~~~~~~~~~~~~l~W~~~~~~~~~i~~y~v~~~~~~~-~~~---- 72 (197)
+.|.|+|++.|..|+ .+..+.+.+...|.--. ..+.-....-..+.|.+.-++.. .|.|....+ ++.
T Consensus 585 d~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~P-----eIawqkdggtdFPAA~e 659 (873)
T KOG4194|consen 585 DEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRP-----EIAWQKDGGTDFPAARE 659 (873)
T ss_pred cCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCc-----ceeehhcCCCCCchhhh
Confidence 579999999999997 45677888887774322 11222344556777776444433 355653222 222
Q ss_pred -EEEeCCcccEEEECCCCCCCEEEEEEEEEcCCcCCCCCCceE
Q psy9139 73 -SVHVDAEYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIA 114 (197)
Q Consensus 73 -~~~~~~~~~~~~i~~L~p~~~y~~~v~a~~~~g~~~~s~~~~ 114 (197)
...+-.....+-|++.++.....|.|.|.|.+|.-.....+.
T Consensus 660 RRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~ 702 (873)
T KOG4194|consen 660 RRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLT 702 (873)
T ss_pred heeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEE
Confidence 334566677889999999999999999999999765544443
No 17
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=97.68 E-value=0.00039 Score=42.81 Aligned_cols=88 Identities=26% Similarity=0.407 Sum_probs=52.9
Q ss_pred CCCEEEEEeecCCeEEEEeeeCC-----CCC-c------cccEEEEEEEeCCCCcEEEEeCCcccEEEECCCCCCCEEEE
Q psy9139 29 GVPNILLQSTTTHSISILWKPSY-----DGG-A------IITHYIVSYRDRTEDWQSVHVDAEYREFTLTQLKCGTHYKI 96 (197)
Q Consensus 29 ~~p~~~~~~~~~~~~~l~W~~~~-----~~~-~------~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~ 96 (197)
+||.+.+ ......+.|.+.+|. ... . .-..|.|.++.....-...........+.|.+|.|++.|-+
T Consensus 4 gPP~v~v-~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~YCv 82 (106)
T PF09294_consen 4 GPPSVNV-SSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSNEKKKEIETKNSSVTLSDLKPGTNYCV 82 (106)
T ss_dssp -SSEEEE-EEETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTSCEEEEEESSSEEEEEES--TTSEEEE
T ss_pred cCCEEEE-EECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCccceEEEeecCCEEEEeCCCCCCCEEE
Confidence 4666555 677888999988875 111 0 11458888775444323334455666789999999999999
Q ss_pred EEEEEc-CC-cCCCCCCceEeec
Q psy9139 97 NIKLVN-SI-GESKPSKTIAAST 117 (197)
Q Consensus 97 ~v~a~~-~~-g~~~~s~~~~~~t 117 (197)
+|.+.. .. ..+.+|....+.|
T Consensus 83 ~V~~~~~~~~~~s~~S~~~C~~t 105 (106)
T PF09294_consen 83 SVQAFSPSQNKNSQPSEPQCITT 105 (106)
T ss_dssp EEEEEECSSTEEEEEBSEEEEE-
T ss_pred EEEEEeccCCCcCCCCCCEeEeC
Confidence 999932 22 2355666555544
No 18
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=97.59 E-value=0.0001 Score=41.89 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=20.8
Q ss_pred CCeeEEEEEEeCCCCceeEEEEEe
Q psy9139 1 MVGNYTCLADNIFGKDDIYYQVTI 24 (197)
Q Consensus 1 ~~g~y~c~a~n~~G~~~~~~~~~~ 24 (197)
++|.|+|.|.|..|+..+++.|.+
T Consensus 48 D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 48 DEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred cCEEEEEEEEcCCCEEEEEEEEEC
Confidence 479999999999999888887754
No 19
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=97.56 E-value=0.00015 Score=40.60 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=19.7
Q ss_pred CCeeEEEEEEeCCCCceeEEEEEe
Q psy9139 1 MVGNYTCLADNIFGKDDIYYQVTI 24 (197)
Q Consensus 1 ~~g~y~c~a~n~~G~~~~~~~~~~ 24 (197)
++|.|+|+|.|..|..+..+.+.+
T Consensus 42 D~G~YtC~a~N~~g~~~~~~~~~l 65 (67)
T cd05863 42 SAGTYTLVLWNSAAGLEKRISLEL 65 (67)
T ss_pred HCEEEEEEEEECCccEEEEEEEEE
Confidence 479999999999998777666544
No 20
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=97.49 E-value=0.0002 Score=40.65 Aligned_cols=24 Identities=38% Similarity=0.574 Sum_probs=20.9
Q ss_pred CCeeEEEEEEeCCCCceeEEEEEe
Q psy9139 1 MVGNYTCLADNIFGKDDIYYQVTI 24 (197)
Q Consensus 1 ~~g~y~c~a~n~~G~~~~~~~~~~ 24 (197)
+.|.|+|.|.|..|.....+.+.|
T Consensus 47 D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 47 DDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred hCEEEEEEEEcCCCeEEEEEEEEE
Confidence 479999999999999888887765
No 21
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=97.48 E-value=0.0024 Score=45.07 Aligned_cols=97 Identities=9% Similarity=-0.004 Sum_probs=58.8
Q ss_pred CCeeEEEEEEeCCCCceeEEEEEecCCCCCCEEEEEeecCCeEEEEeeeCCCC--CccccEEEEEEEeCCCC---cEEEE
Q psy9139 1 MVGNYTCLADNIFGKDDIYYQVTILSPPGVPNILLQSTTTHSISILWKPSYDG--GAIITHYIVSYRDRTED---WQSVH 75 (197)
Q Consensus 1 ~~g~y~c~a~n~~G~~~~~~~~~~~~~P~~p~~~~~~~~~~~~~l~W~~~~~~--~~~i~~y~v~~~~~~~~---~~~~~ 75 (197)
++|.|+|.|.|..|.....+.+.+...+. .+ .......+.|.|...... +.+ .-.+.|...... -....
T Consensus 109 DsG~Y~C~a~N~~~~~~~~i~L~V~~~~~--~~--~~~~G~~v~L~C~~~~~~~~~~p--~p~I~WyKng~~l~~~~r~~ 182 (227)
T PHA02826 109 DEGIYICTISSGNICEESTIRLTFDSGTI--NY--QFNSGKDSKLHCYGTDGISSTFK--DYTLTWYKNGNIVLYTDRIQ 182 (227)
T ss_pred HCEEEEEEEEECCcceEEEEEEEEecCCc--cc--eEecCCCEEEEeeCCCCccccCC--CceEEEEECCEECCCCCCEE
Confidence 37999999999998888888887743321 12 223467788888753211 111 113444321100 00122
Q ss_pred eCCcccEEEECCCCCCCEEEEEEEEEcC
Q psy9139 76 VDAEYREFTLTQLKCGTHYKINIKLVNS 103 (197)
Q Consensus 76 ~~~~~~~~~i~~L~p~~~y~~~v~a~~~ 103 (197)
+......+.|.++.......|.|.+...
T Consensus 183 ~~~~~~~L~I~~V~~~DsG~YtC~a~~~ 210 (227)
T PHA02826 183 LRNNNSTLVIKSATHDDSGIYTCNLRFN 210 (227)
T ss_pred EeCCCCEEEECcCCHHhCEEEEEEEEEe
Confidence 2334457899999999999999988864
No 22
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=97.45 E-value=0.0002 Score=40.35 Aligned_cols=24 Identities=38% Similarity=0.618 Sum_probs=20.5
Q ss_pred CCeeEEEEEEeCCCCceeEEEEEe
Q psy9139 1 MVGNYTCLADNIFGKDDIYYQVTI 24 (197)
Q Consensus 1 ~~g~y~c~a~n~~G~~~~~~~~~~ 24 (197)
++|.|+|.|.|..|.....+.+.|
T Consensus 46 D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 46 DEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred HCEEEEEEEEcCCCcEEEEEEEEC
Confidence 579999999999999888777653
No 23
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=97.44 E-value=0.00021 Score=40.43 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=20.8
Q ss_pred CCeeEEEEEEeCCCCceeEEEEEe
Q psy9139 1 MVGNYTCLADNIFGKDDIYYQVTI 24 (197)
Q Consensus 1 ~~g~y~c~a~n~~G~~~~~~~~~~ 24 (197)
++|.|+|.|.|..|.....+.+.|
T Consensus 47 D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 47 DDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred HCEEEEEEEEeCCceEEEEEEEEE
Confidence 479999999999999888887765
No 24
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=97.36 E-value=0.00035 Score=39.55 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=19.0
Q ss_pred CCeeEEEEEEeCCCCceeEEEEEe
Q psy9139 1 MVGNYTCLADNIFGKDDIYYQVTI 24 (197)
Q Consensus 1 ~~g~y~c~a~n~~G~~~~~~~~~~ 24 (197)
++|.|+|.|.|..|..+....+.+
T Consensus 45 D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 45 DAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred HCEEEEEEEEECCCceeeEEEEEE
Confidence 479999999999998776655543
No 25
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.30 E-value=0.00041 Score=39.76 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.0
Q ss_pred CCeeEEEEEEeCCCCceeEEEEEe
Q psy9139 1 MVGNYTCLADNIFGKDDIYYQVTI 24 (197)
Q Consensus 1 ~~g~y~c~a~n~~G~~~~~~~~~~ 24 (197)
++|.|+|.|.|..|.....+.+.|
T Consensus 51 D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 51 DTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred cCEEEEEEEEcCCCEEEeeEEEEE
Confidence 579999999999999888887765
No 26
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=97.28 E-value=0.00038 Score=39.23 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=19.0
Q ss_pred CCeeEEEEEEeCCCCceeEEEE
Q psy9139 1 MVGNYTCLADNIFGKDDIYYQV 22 (197)
Q Consensus 1 ~~g~y~c~a~n~~G~~~~~~~~ 22 (197)
+.|.|+|.|.|..|..+.++.|
T Consensus 47 D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 47 DQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred hCEEEEEEEECCCCcEEEEEEe
Confidence 4799999999999998877655
No 27
>PHA02785 IL-beta-binding protein; Provisional
Probab=97.25 E-value=0.0051 Score=45.92 Aligned_cols=102 Identities=11% Similarity=0.054 Sum_probs=56.6
Q ss_pred CCeeEEEEEEeCCCCceeEEEEEecCCC--CCC-E-EEEEeecCCeEEEEeeeC--C-CCCccccEEEEEEEeCC-CCcE
Q psy9139 1 MVGNYTCLADNIFGKDDIYYQVTILSPP--GVP-N-ILLQSTTTHSISILWKPS--Y-DGGAIITHYIVSYRDRT-EDWQ 72 (197)
Q Consensus 1 ~~g~y~c~a~n~~G~~~~~~~~~~~~~P--~~p-~-~~~~~~~~~~~~l~W~~~--~-~~~~~i~~y~v~~~~~~-~~~~ 72 (197)
++|.|+|+|.|..|....++.|.+.... ... . ............+.|... . .++.+ -.+.|.... ....
T Consensus 93 DsG~Y~C~a~N~~g~~~~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~---~~i~W~k~~~~~~~ 169 (326)
T PHA02785 93 DSGIYICITKNETYCDMMSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVN---ADIIWSGHRRLRNK 169 (326)
T ss_pred cCeEEEEEEECCCcceEEEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCC---ceEEEccCCccCCc
Confidence 4799999999999987777777665432 111 1 101112334566777532 0 11111 124443211 1111
Q ss_pred EEEeCCcccEEEECCCCCCCEEEEEEEEEcCCcC
Q psy9139 73 SVHVDAEYREFTLTQLKCGTHYKINIKLVNSIGE 106 (197)
Q Consensus 73 ~~~~~~~~~~~~i~~L~p~~~y~~~v~a~~~~g~ 106 (197)
.... .....+.|.++.......|.|.+.|..|.
T Consensus 170 r~~~-~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~ 202 (326)
T PHA02785 170 RLKQ-RTPGIITIEDVRKNDAGYYTCVLKYIYGD 202 (326)
T ss_pred ceEe-cCCCeEEEeecChhhCeEEEEEEEeccCC
Confidence 1111 12346888899888888999999887664
No 28
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=97.17 E-value=0.00077 Score=38.69 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=22.2
Q ss_pred CCeeEEEEEEeCCCCceeEEEEEec
Q psy9139 1 MVGNYTCLADNIFGKDDIYYQVTIL 25 (197)
Q Consensus 1 ~~g~y~c~a~n~~G~~~~~~~~~~~ 25 (197)
+.|.|+|.|.|..|..+..+.|.|.
T Consensus 50 D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 50 DTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred cCEEEEEEEEcCCCCcceEEEEEEE
Confidence 5799999999999999888888775
No 29
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=97.15 E-value=0.013 Score=36.08 Aligned_cols=76 Identities=16% Similarity=0.254 Sum_probs=53.2
Q ss_pred CCCEEEEEeecCCeEEEEeeeCCCCCccccEEEEEEE-eCCCCcEEE--EeCCcccEEEECCC--CCCCEEEEEEEEEcC
Q psy9139 29 GVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYR-DRTEDWQSV--HVDAEYREFTLTQL--KCGTHYKINIKLVNS 103 (197)
Q Consensus 29 ~~p~~~~~~~~~~~~~l~W~~~~~~~~~i~~y~v~~~-~~~~~~~~~--~~~~~~~~~~i~~L--~p~~~y~~~v~a~~~ 103 (197)
.|.++.+... .-...|.|+++.... +-..|.++++ ...+.|..+ -.....+.+.++.. ++...|.+||+|..+
T Consensus 24 ~P~nv~~~s~-nf~~iL~W~~~~~~~-~~~~ytVq~~~~~~~~W~~v~~C~~i~~~~Cdlt~~~~~~~~~Y~~rV~A~~~ 101 (107)
T PF01108_consen 24 APQNVTVDSV-NFKHILRWDPGPGSP-PNVTYTVQYKKYGSSSWKDVPGCQNITETSCDLTDETSDPSESYYARVRAEVG 101 (107)
T ss_dssp SCEEEEEEEE-TTEEEEEEEESTTSS-STEEEEEEEEESSTSCEEEECCEEEESSSEEECTTCCTTTTSEEEEEEEEEET
T ss_pred CCCeeEEEEE-CCceEEEeCCCCCCC-CCeEEEEEEEecCCcceeeccceecccccceeCcchhhcCcCCEEEEEEEEeC
Confidence 3333665544 455789999955333 3467999999 677889887 34455678888774 378899999999876
Q ss_pred CcC
Q psy9139 104 IGE 106 (197)
Q Consensus 104 ~g~ 106 (197)
...
T Consensus 102 ~~~ 104 (107)
T PF01108_consen 102 NQT 104 (107)
T ss_dssp TEE
T ss_pred Ccc
Confidence 543
No 30
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=97.15 E-value=0.0008 Score=38.15 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=19.4
Q ss_pred CCeeEEEEEEeCCCCceeEEEEEe
Q psy9139 1 MVGNYTCLADNIFGKDDIYYQVTI 24 (197)
Q Consensus 1 ~~g~y~c~a~n~~G~~~~~~~~~~ 24 (197)
++|.|+|.|.|..|.....+.+.+
T Consensus 46 D~G~YtC~a~N~~g~~~~~~~~~~ 69 (71)
T cd04976 46 DAGNYTVVLTNKQAKLEKRLTFTL 69 (71)
T ss_pred HCEEEEEEEEcCCccEEEEEEEEE
Confidence 479999999999998776665544
No 31
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=97.14 E-value=0.00091 Score=39.84 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=23.8
Q ss_pred CCeeEEEEEEeCCCCceeEEEEEecCC
Q psy9139 1 MVGNYTCLADNIFGKDDIYYQVTILSP 27 (197)
Q Consensus 1 ~~g~y~c~a~n~~G~~~~~~~~~~~~~ 27 (197)
++|.|+|.|.|..|.....+.|.|...
T Consensus 58 D~G~Y~C~a~N~~G~~~~~~~l~V~~~ 84 (90)
T cd05726 58 DVGYYICQTLNVAGSILTKAYLEVTDV 84 (90)
T ss_pred hCEEEEEEEEcCCCceEEEEEEEEeec
Confidence 479999999999999988898888754
No 32
>PHA02785 IL-beta-binding protein; Provisional
Probab=97.09 E-value=0.029 Score=42.00 Aligned_cols=104 Identities=13% Similarity=0.140 Sum_probs=58.0
Q ss_pred CCeeEEEEEEeCCCCcee----EEEEEecCCCCCCEE----EEEeecCCeEEEEeeeCCCCCccccEEEEEEEeCC----
Q psy9139 1 MVGNYTCLADNIFGKDDI----YYQVTILSPPGVPNI----LLQSTTTHSISILWKPSYDGGAIITHYIVSYRDRT---- 68 (197)
Q Consensus 1 ~~g~y~c~a~n~~G~~~~----~~~~~~~~~P~~p~~----~~~~~~~~~~~l~W~~~~~~~~~i~~y~v~~~~~~---- 68 (197)
+.|.|+|.|.|..|.... .+.+.+..+..+|.+ .........+.|.|.....+. +.. -.+.|...+
T Consensus 188 d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P~-~~~-~~v~W~kng~~i~ 265 (326)
T PHA02785 188 DAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRPP-TTD-ADVFWISNGMYYE 265 (326)
T ss_pred hCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEECCCC-CCC-ceEEEEECCEECC
Confidence 579999999999886533 334555443334421 112233667889888743222 100 124444211
Q ss_pred -CC-c--EEEEe-C---------CcccEEEECCCCCCCEEEEEEEEEcCCcC
Q psy9139 69 -ED-W--QSVHV-D---------AEYREFTLTQLKCGTHYKINIKLVNSIGE 106 (197)
Q Consensus 69 -~~-~--~~~~~-~---------~~~~~~~i~~L~p~~~y~~~v~a~~~~g~ 106 (197)
.. - ..+.. . .....++|.++.......|.|.|.|..|.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~ 317 (326)
T PHA02785 266 EDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSI 317 (326)
T ss_pred CcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCc
Confidence 00 0 01111 0 01245888999888889999999997743
No 33
>KOG4802|consensus
Probab=97.08 E-value=0.0039 Score=46.78 Aligned_cols=103 Identities=15% Similarity=0.319 Sum_probs=57.9
Q ss_pred EEEEEEeCCCCceeE---EEEEe-c--CCCCCCE-EEEEee--cCCe-EEEEeeeCCCCCccccEEEEEEEeC---CCCc
Q psy9139 5 YTCLADNIFGKDDIY---YQVTI-L--SPPGVPN-ILLQST--TTHS-ISILWKPSYDGGAIITHYIVSYRDR---TEDW 71 (197)
Q Consensus 5 y~c~a~n~~G~~~~~---~~~~~-~--~~P~~p~-~~~~~~--~~~~-~~l~W~~~~~~~~~i~~y~v~~~~~---~~~~ 71 (197)
|.+.|.|..|...-+ -.... . ..|.+|. +.+..+ .... ..|.|.|+ ..+.||..|.|.|... ....
T Consensus 224 frvaavn~~G~rGFs~PSkpf~ssk~pkaPp~P~dl~l~~v~~dG~~~~~v~w~P~-~sdlPv~~Yki~Ws~~v~s~k~~ 302 (516)
T KOG4802|consen 224 FRVAAVNAYGFRGFSEPSKPFPSSKNPKAPPSPNDLKLIGVQFDGRYMLKVVWCPS-KSDLPVEKYKITWSLYVNSAKAS 302 (516)
T ss_pred EEEeeeecccccccCCCCCCCCCCCCCCCCcCcccceeeeeeecceEEEEEEeCCC-CCCCcceeeEEEeehhhhhhhhh
Confidence 556677887742211 11111 1 1233443 443333 3332 45566654 4467899999999721 1111
Q ss_pred EEE--EeCCcccEEEECCCCCCCEEEEEEEEEcCCcCCC
Q psy9139 72 QSV--HVDAEYREFTLTQLKCGTHYKINIKLVNSIGESK 108 (197)
Q Consensus 72 ~~~--~~~~~~~~~~i~~L~p~~~y~~~v~a~~~~g~~~ 108 (197)
+.. ...-+..++.|++|.|+..|.+.|.|....|...
T Consensus 303 m~tks~~~k~thq~si~~L~Pns~Y~VevqAi~y~g~~r 341 (516)
T KOG4802|consen 303 MITKSSYVKDTHQFSIKELLPNSSYYVEVQAISYLGSRR 341 (516)
T ss_pred cccccceeeccchhhhhhcCCCCeEEEEEEEEEeccCcc
Confidence 110 1112223455999999999999999998887654
No 34
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=97.06 E-value=0.00093 Score=37.66 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=18.4
Q ss_pred CCeeEEEEEEeCCCCceeEEEE
Q psy9139 1 MVGNYTCLADNIFGKDDIYYQV 22 (197)
Q Consensus 1 ~~g~y~c~a~n~~G~~~~~~~~ 22 (197)
.+|+|+|.|.|..|...+++.+
T Consensus 47 d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 47 ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred cCeeEEEEEEeCCCEEEEEEEE
Confidence 3699999999999987777654
No 35
>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors. The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....
Probab=97.05 E-value=0.016 Score=35.43 Aligned_cols=80 Identities=19% Similarity=0.417 Sum_probs=59.8
Q ss_pred CCCCCCE-EEEEeecCCeEEEEeeeCCCCCccccEEEEEEEeCCCCcEEEEeC--CcccE-----EEE--CCCCCCCEEE
Q psy9139 26 SPPGVPN-ILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDRTEDWQSVHVD--AEYRE-----FTL--TQLKCGTHYK 95 (197)
Q Consensus 26 ~~P~~p~-~~~~~~~~~~~~l~W~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~--~~~~~-----~~i--~~L~p~~~y~ 95 (197)
.+|+.|. +.+.+.....++..|+++.+++.+. .|.+.|......|.....- ...+. +.+ .+..=++.|.
T Consensus 6 ~~p~~P~~~~C~S~~~etftC~W~~g~~~~l~~-~y~L~Y~~~~~~~~eCp~~~~~~~ns~~~~~C~F~~~~t~lf~~y~ 84 (104)
T PF09067_consen 6 LPPEKPENLKCFSREMETFTCFWEPGSEGNLPT-NYTLFYKKEGEEWKECPDYSTSGPNSTVRHICYFPKSDTSLFVPYC 84 (104)
T ss_dssp HHCCCCEEEEEEBSSSS-EEEEEEEESSSTSTC-EEEEEEEETTSEEEEESESSTTETTEEEEEEEEE-CCGCSSSSEEE
T ss_pred cCCCCCccCccCCCCCCcEEEEeeCCCCCCCCC-cEEEEEEeCCCCCccCCCeEecCCCCceeEEEEcCCCCeEEEEEEE
Confidence 4678887 8899999999999999987666553 3999998665777776532 22333 444 4678899999
Q ss_pred EEEEEEcCCcC
Q psy9139 96 INIKLVNSIGE 106 (197)
Q Consensus 96 ~~v~a~~~~g~ 106 (197)
++|.+.|..|.
T Consensus 85 i~V~a~~~~~~ 95 (104)
T PF09067_consen 85 IQVEATNALGS 95 (104)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEeccCCCc
Confidence 99999998874
No 36
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=96.89 E-value=0.04 Score=40.29 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=23.9
Q ss_pred CcccEEEECCCCCCCEEEEEEEEEcCC
Q psy9139 78 AEYREFTLTQLKCGTHYKINIKLVNSI 104 (197)
Q Consensus 78 ~~~~~~~i~~L~p~~~y~~~v~a~~~~ 104 (197)
+..+.++|.+|.|++.|.|.|.+.|..
T Consensus 12 g~~t~~t~~~L~p~t~YyfdVF~vn~~ 38 (300)
T PF10179_consen 12 GQKTNQTLSGLKPDTTYYFDVFVVNQL 38 (300)
T ss_pred CCCceEEeccCCCCCeEEEEEEEEECC
Confidence 456789999999999999999999874
No 37
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=96.85 E-value=0.0018 Score=37.02 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=19.2
Q ss_pred CCeeEEEEEEeCCCCc-eeEEEEEe
Q psy9139 1 MVGNYTCLADNIFGKD-DIYYQVTI 24 (197)
Q Consensus 1 ~~g~y~c~a~n~~G~~-~~~~~~~~ 24 (197)
++|.|+|.|.|..|.. +..+.+.|
T Consensus 49 D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 49 DQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred hCEEEEEEEECCCCceEcccEEEEE
Confidence 5799999999999974 56666655
No 38
>KOG4194|consensus
Probab=96.73 E-value=0.027 Score=44.90 Aligned_cols=50 Identities=20% Similarity=0.240 Sum_probs=37.6
Q ss_pred CCeeEEEEEEeCCCCceeEEEEEecCCCCCCE--EEEEeecCCeEEEEeeeC
Q psy9139 1 MVGNYTCLADNIFGKDDIYYQVTILSPPGVPN--ILLQSTTTHSISILWKPS 50 (197)
Q Consensus 1 ~~g~y~c~a~n~~G~~~~~~~~~~~~~P~~p~--~~~~~~~~~~~~l~W~~~ 50 (197)
.+|.|+|.|.|..|+-++.+.+.|.+.|..-. ....-.....+.+.|...
T Consensus 680 D~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~ 731 (873)
T KOG4194|consen 680 DQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAE 731 (873)
T ss_pred ccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecceEEEEEecC
Confidence 37999999999999999999999998875433 222224456777888764
No 39
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=96.69 E-value=0.0039 Score=36.39 Aligned_cols=32 Identities=28% Similarity=0.476 Sum_probs=27.6
Q ss_pred cceEEEcCCCCCCeEEEEEEEEcCCCCCCcce
Q psy9139 138 EMPLVIENLLPATRYELTISAKNDAGSTNKNY 169 (197)
Q Consensus 138 ~~~~~i~~L~p~t~Y~v~V~a~n~~G~~~~~~ 169 (197)
...+.+.+|.|++.|.|+|+|.+..|.|..+.
T Consensus 56 ~~~~~i~~l~p~~~Y~~~v~a~~~~~~~~~s~ 87 (93)
T cd00063 56 ETSYTLTGLKPGTEYEFRVRAVNGGGESPPSE 87 (93)
T ss_pred ccEEEEccccCCCEEEEEEEEECCCccCCCcc
Confidence 56799999999999999999999888776443
No 40
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=96.67 E-value=0.0025 Score=36.72 Aligned_cols=24 Identities=33% Similarity=0.528 Sum_probs=18.0
Q ss_pred CCeeEEEEEEeCCCCce--eEEEEEe
Q psy9139 1 MVGNYTCLADNIFGKDD--IYYQVTI 24 (197)
Q Consensus 1 ~~g~y~c~a~n~~G~~~--~~~~~~~ 24 (197)
++|.|+|.|.|..|+.. ..+.+.+
T Consensus 49 D~G~Y~C~a~N~~G~~~s~~~~~l~v 74 (77)
T cd05760 49 DSGLYYCCAHNAFGSVCSSQNFTLSI 74 (77)
T ss_pred cCEEEEEEEEeCCCeEeeCceEEEEE
Confidence 57999999999999753 3444444
No 41
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=96.63 E-value=0.013 Score=37.96 Aligned_cols=50 Identities=18% Similarity=0.264 Sum_probs=34.8
Q ss_pred CCeeEEEEEEeCCCCceeEEEEEecCCCCCCE-EE-EEeecCCeEEEEeeeC
Q psy9139 1 MVGNYTCLADNIFGKDDIYYQVTILSPPGVPN-IL-LQSTTTHSISILWKPS 50 (197)
Q Consensus 1 ~~g~y~c~a~n~~G~~~~~~~~~~~~~P~~p~-~~-~~~~~~~~~~l~W~~~ 50 (197)
+.|.|.|.+.|..|.....+.|.+..+|.... .. ........+.|.|...
T Consensus 12 D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~ 63 (139)
T cd05771 12 DEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIA 63 (139)
T ss_pred HCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEEC
Confidence 37999999999989888888999987775432 11 1111345677888764
No 42
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=96.60 E-value=0.0046 Score=35.01 Aligned_cols=26 Identities=35% Similarity=0.586 Sum_probs=23.3
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCC
Q psy9139 139 MPLVIENLLPATRYELTISAKNDAGS 164 (197)
Q Consensus 139 ~~~~i~~L~p~t~Y~v~V~a~n~~G~ 164 (197)
..+.+.+|.|++.|.|+|+|.+..|.
T Consensus 57 ~~~~i~~L~~~~~Y~v~v~a~~~~g~ 82 (83)
T smart00060 57 TSYTLTGLKPGTEYEFRVRAVNGAGE 82 (83)
T ss_pred cEEEEeCcCCCCEEEEEEEEEcccCC
Confidence 47999999999999999999987664
No 43
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=96.23 E-value=0.0049 Score=35.53 Aligned_cols=21 Identities=33% Similarity=0.157 Sum_probs=16.7
Q ss_pred CCeeEEEEEEeCCCCceeEEE
Q psy9139 1 MVGNYTCLADNIFGKDDIYYQ 21 (197)
Q Consensus 1 ~~g~y~c~a~n~~G~~~~~~~ 21 (197)
+.|.|+|.|.|..|.......
T Consensus 53 D~G~Y~C~a~N~~G~~~~~~~ 73 (78)
T cd05743 53 DQGAYTCEAINTRGMVFGIPD 73 (78)
T ss_pred HCEEEEEEEEecCCEEEeccc
Confidence 479999999999997655443
No 44
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=95.57 E-value=0.068 Score=29.53 Aligned_cols=38 Identities=26% Similarity=0.551 Sum_probs=25.4
Q ss_pred CCeeecCCCCCcccccceEEEcCCCCCCeEEEEEEEEcCCCCCCc
Q psy9139 123 TDWINIPLSNLDEALEMPLVIENLLPATRYELTISAKNDAGSTNK 167 (197)
Q Consensus 123 ~~w~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~n~~G~~~~ 167 (197)
.+|...... ...+.+.+|.|| .|.|.|+|.+..|....
T Consensus 19 ~~W~~~~~~------~~~~~~~~L~~G-~Y~l~V~a~~~~~~~~~ 56 (66)
T PF07495_consen 19 DEWITLGSY------SNSISYTNLPPG-KYTLEVRAKDNNGKWSS 56 (66)
T ss_dssp SSEEEESST------S-EEEEES--SE-EEEEEEEEEETTS-B-S
T ss_pred CeEEECCCC------cEEEEEEeCCCE-EEEEEEEEECCCCCcCc
Confidence 446655543 227899999999 99999999998876553
No 45
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=95.48 E-value=0.28 Score=29.60 Aligned_cols=79 Identities=9% Similarity=0.061 Sum_probs=45.4
Q ss_pred ecCCeEEEEeeeCCCCCccccEEEEEEEeCCCCcEEEEeCCcccEEEECCCCCCCEEEEEEEEEcCCcCCCCCCceEee
Q psy9139 38 TTTHSISILWKPSYDGGAIITHYIVSYRDRTEDWQSVHVDAEYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAAS 116 (197)
Q Consensus 38 ~~~~~~~l~W~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~~~~g~~~~s~~~~~~ 116 (197)
.....+.|.+...-.+...+.||+-...........+........++|.+........|.|.+.|..|....+..+.+.
T Consensus 13 ~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~ 91 (98)
T cd05762 13 RAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVV 91 (98)
T ss_pred ECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEEe
Confidence 4456677777653222222333221111111212222333445678999999999999999999999986655444443
No 46
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=95.14 E-value=0.24 Score=27.93 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=26.6
Q ss_pred CCcccEEEECCCCCCCEEEEEEEEEcCCcCCC
Q psy9139 77 DAEYREFTLTQLKCGTHYKINIKLVNSIGESK 108 (197)
Q Consensus 77 ~~~~~~~~i~~L~p~~~y~~~v~a~~~~g~~~ 108 (197)
......+.|.++.+.....|.|.|.|..|...
T Consensus 36 ~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 67 (74)
T cd05748 36 TASSTSLVIKNAERSDSGKYTLTLKNPAGEKS 67 (74)
T ss_pred CCCeEEEEECCCCcCcCEEEEEEEECCCccEE
Confidence 34456789999999999999999999988643
No 47
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=95.03 E-value=0.33 Score=27.77 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=25.2
Q ss_pred cccEEEECCCCCCCEEEEEEEEEcCCcCCC
Q psy9139 79 EYREFTLTQLKCGTHYKINIKLVNSIGESK 108 (197)
Q Consensus 79 ~~~~~~i~~L~p~~~y~~~v~a~~~~g~~~ 108 (197)
....+.|.++.......|.|.|.|..|...
T Consensus 40 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 69 (78)
T cd05743 40 GYGTLTIRDVKESDQGAYTCEAINTRGMVF 69 (78)
T ss_pred CEEEEEECCCChHHCEEEEEEEEecCCEEE
Confidence 345689999999999999999999998643
No 48
>KOG4258|consensus
Probab=94.88 E-value=0.12 Score=42.88 Aligned_cols=74 Identities=19% Similarity=0.343 Sum_probs=54.4
Q ss_pred cCCeEEEEeeeCCCCCccccEEEEEEEe-CCCCcEEEEe---CCcccEEEECCCCCCCEEEEEEEEEcCCcCCCCCCce
Q psy9139 39 TTHSISILWKPSYDGGAIITHYIVSYRD-RTEDWQSVHV---DAEYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTI 113 (197)
Q Consensus 39 ~~~~~~l~W~~~~~~~~~i~~y~v~~~~-~~~~~~~~~~---~~~~~~~~i~~L~p~~~y~~~v~a~~~~g~~~~s~~~ 113 (197)
..+++.|.|.+|.++++-|..|.|.++. ..+....... ........+..|.|| .|..+|+|..-.|.+.+....
T Consensus 841 ~~~~v~l~w~EP~~pNGli~~Y~Vk~r~~~~et~v~cvsR~~~~k~~gv~l~~l~~G-~y~~~vratSlaGng~~t~~~ 918 (1025)
T KOG4258|consen 841 EMNSVILRWLEPKEPNGLILNYEVKYRRNGDETHVECVSRMDYAKAGGVYLKRLNPG-NYSVRVRATSLAGNGSWTESV 918 (1025)
T ss_pred CcceEEEecCCCCCCCccEEEEEEEEeeccCcchhhhhhhhhhhhcCceEEEecCCC-cEEEEEEEEeeccCCCCcCCc
Confidence 7889999999999888889999999983 3332221110 122334677889898 799999999999988876543
No 49
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=94.79 E-value=0.33 Score=28.43 Aligned_cols=38 Identities=5% Similarity=0.074 Sum_probs=30.0
Q ss_pred cccEEEECCCCCCCEEEEEEEEEcCCcCCCCCCceEee
Q psy9139 79 EYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAAS 116 (197)
Q Consensus 79 ~~~~~~i~~L~p~~~y~~~v~a~~~~g~~~~s~~~~~~ 116 (197)
....++|.++++.....|.|.|.|..|....+..+.+.
T Consensus 45 ~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V~ 82 (85)
T cd05854 45 TIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLVVR 82 (85)
T ss_pred eEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEEEE
Confidence 34578999999999999999999999876555444443
No 50
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=94.75 E-value=1.2 Score=32.93 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=21.4
Q ss_pred eEEEcCCCCCCeEEEEEEEEcCCCCC
Q psy9139 140 PLVIENLLPATRYELTISAKNDAGST 165 (197)
Q Consensus 140 ~~~i~~L~p~t~Y~v~V~a~n~~G~~ 165 (197)
..+|.+|+||+.|.|.|.+.-..|.+
T Consensus 261 tetI~~L~PG~~Yl~dV~~~~~~G~s 286 (300)
T PF10179_consen 261 TETIKGLKPGTTYLFDVYVNGPSGQS 286 (300)
T ss_pred eeecccCCCCcEEEEEEEEecCCCce
Confidence 46799999999999999998665554
No 51
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=94.63 E-value=0.5 Score=28.00 Aligned_cols=29 Identities=21% Similarity=0.293 Sum_probs=25.0
Q ss_pred ccEEEECCCCCCCEEEEEEEEEcCCcCCC
Q psy9139 80 YREFTLTQLKCGTHYKINIKLVNSIGESK 108 (197)
Q Consensus 80 ~~~~~i~~L~p~~~y~~~v~a~~~~g~~~ 108 (197)
...+.|.++.+.....|.|.|.|..|...
T Consensus 57 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 85 (92)
T cd05737 57 YASLTIKGVSSEDSGKYGIVVKNKYGGET 85 (92)
T ss_pred EEEEEEccCChhhCEEEEEEEEECCCcce
Confidence 45689999999999999999999988654
No 52
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=94.35 E-value=0.42 Score=28.13 Aligned_cols=69 Identities=6% Similarity=-0.024 Sum_probs=40.3
Q ss_pred ecCCeEEEEeeeCCCCCccccEEEEEEEeCCCCcEEEEeCCcccEEEECCCCCCCEEEEEEEEEcCCcCCCCC
Q psy9139 38 TTTHSISILWKPSYDGGAIITHYIVSYRDRTEDWQSVHVDAEYREFTLTQLKCGTHYKINIKLVNSIGESKPS 110 (197)
Q Consensus 38 ~~~~~~~l~W~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~~~~g~~~~s 110 (197)
.....+.|.|...-.+...+.||+.... .... .. .......+.|.++.+.....|.|.|.|..|....+
T Consensus 14 ~~G~~v~l~C~~~G~P~P~v~W~k~~~~-~~~~-~~--~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~ 82 (88)
T cd05851 14 LKGQNVTLECFALGNPVPVIRWRKILEP-MPAT-AE--ISMSGAVLKIFNIQPEDEGTYECEAENIKGKDKHQ 82 (88)
T ss_pred eCCCcEEEEEEecccCCCEEEEEECCcC-CCCC-CE--EecCCCEEEECcCChhhCEEEEEEEEcCCCceEEE
Confidence 3466788888764322222333221110 0011 11 12234578999999999999999999999876443
No 53
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=94.28 E-value=0.47 Score=27.97 Aligned_cols=31 Identities=13% Similarity=0.309 Sum_probs=25.6
Q ss_pred cccEEEECCCCCCCEEEEEEEEEcCCcCCCC
Q psy9139 79 EYREFTLTQLKCGTHYKINIKLVNSIGESKP 109 (197)
Q Consensus 79 ~~~~~~i~~L~p~~~y~~~v~a~~~~g~~~~ 109 (197)
....+.|.++.+.....|.|.|.|..|....
T Consensus 54 ~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~ 84 (90)
T cd04972 54 DIYNLQLSNITSETQTTVTCTAENPVGQANV 84 (90)
T ss_pred CEEEEEEecCCcccCEEEEEEEECCCCceeE
Confidence 3456889999999899999999999987543
No 54
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=94.22 E-value=0.18 Score=28.74 Aligned_cols=29 Identities=7% Similarity=-0.098 Sum_probs=25.0
Q ss_pred EEEECCCCCCCEEEEEEEEEcCCcCCCCC
Q psy9139 82 EFTLTQLKCGTHYKINIKLVNSIGESKPS 110 (197)
Q Consensus 82 ~~~i~~L~p~~~y~~~v~a~~~~g~~~~s 110 (197)
.+.|.++.+.....|.|.|.|..|....+
T Consensus 42 ~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~ 70 (75)
T cd05893 42 CLLIQGATKEDAGWYTVSAKNEAGIVSCT 70 (75)
T ss_pred EEEECCCCHHHCEEEEEEEEcCCCEEEEE
Confidence 58899999999999999999999875443
No 55
>PLN02533 probable purple acid phosphatase
Probab=94.18 E-value=1.3 Score=34.68 Aligned_cols=83 Identities=14% Similarity=0.134 Sum_probs=47.0
Q ss_pred CCCCCE-EEEEeecCCeEEEEeeeCCCCCccccEEEEEEEeC-CCCcEEE------------EeCCcccEEEECCCCCCC
Q psy9139 27 PPGVPN-ILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDR-TEDWQSV------------HVDAEYREFTLTQLKCGT 92 (197)
Q Consensus 27 ~P~~p~-~~~~~~~~~~~~l~W~~~~~~~~~i~~y~v~~~~~-~~~~~~~------------~~~~~~~~~~i~~L~p~~ 92 (197)
.|..|. +++.-...+++.|+|.-.... .+ .|+|... ....... ..+.......|++|+|++
T Consensus 40 ~~~~P~qvhls~~~~~~m~V~W~T~~~~-~~----~V~yG~~~~~l~~~a~g~~~~~~~~~~~~~g~iH~v~l~~L~p~T 114 (427)
T PLN02533 40 DPTHPDQVHISLVGPDKMRISWITQDSI-PP----SVVYGTVSGKYEGSANGTSSSYHYLLIYRSGQINDVVIGPLKPNT 114 (427)
T ss_pred CCCCCceEEEEEcCCCeEEEEEECCCCC-CC----EEEEecCCCCCcceEEEEEEEEeccccccCCeEEEEEeCCCCCCC
Confidence 445565 666555688999999875432 22 2444311 1111110 012234567899999999
Q ss_pred EEEEEEEEEcCCcCCCCCCceEeecCCC
Q psy9139 93 HYKINIKLVNSIGESKPSKTIAASTKGE 120 (197)
Q Consensus 93 ~y~~~v~a~~~~g~~~~s~~~~~~t~~~ 120 (197)
.|.|+|-. ...+....++|.+.
T Consensus 115 ~Y~Yrvg~------~~~s~~~~F~T~p~ 136 (427)
T PLN02533 115 VYYYKCGG------PSSTQEFSFRTPPS 136 (427)
T ss_pred EEEEEECC------CCCccceEEECCCC
Confidence 99999842 12244556666544
No 56
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=94.16 E-value=0.27 Score=27.10 Aligned_cols=41 Identities=15% Similarity=0.379 Sum_probs=27.0
Q ss_pred eCCCCcEEEEeCCcccEEEECCCCCCCEEEEEEEEEcCCcCCCC
Q psy9139 66 DRTEDWQSVHVDAEYREFTLTQLKCGTHYKINIKLVNSIGESKP 109 (197)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~~~~g~~~~ 109 (197)
..++.|.... .....+.+.+|.|| .|.+.|+|.+..|....
T Consensus 16 g~d~~W~~~~--~~~~~~~~~~L~~G-~Y~l~V~a~~~~~~~~~ 56 (66)
T PF07495_consen 16 GFDDEWITLG--SYSNSISYTNLPPG-KYTLEVRAKDNNGKWSS 56 (66)
T ss_dssp TTESSEEEES--STS-EEEEES--SE-EEEEEEEEEETTS-B-S
T ss_pred CCCCeEEECC--CCcEEEEEEeCCCE-EEEEEEEEECCCCCcCc
Confidence 4567787644 22228899999999 79999999998876543
No 57
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=94.11 E-value=0.11 Score=30.29 Aligned_cols=14 Identities=29% Similarity=0.472 Sum_probs=12.5
Q ss_pred CCeeEEEEEEeCCC
Q psy9139 1 MVGNYTCLADNIFG 14 (197)
Q Consensus 1 ~~g~y~c~a~n~~G 14 (197)
++|.|+|.|.|..+
T Consensus 57 DsG~Y~C~a~n~~~ 70 (84)
T cd05861 57 DSGTYECAAHESTQ 70 (84)
T ss_pred CCEEEEEEEEECcc
Confidence 58999999999876
No 58
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=94.00 E-value=0.73 Score=27.37 Aligned_cols=65 Identities=6% Similarity=0.050 Sum_probs=39.4
Q ss_pred cCCeEEEEeeeCCCCCccccEEEEEEEeCCCCcEEEEeCCcccEEEECCCCCCCEEEEEEEEEcCCcCC
Q psy9139 39 TTHSISILWKPSYDGGAIITHYIVSYRDRTEDWQSVHVDAEYREFTLTQLKCGTHYKINIKLVNSIGES 107 (197)
Q Consensus 39 ~~~~~~l~W~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~~~~g~~ 107 (197)
....+.|.|..... ...+.||+-........ ..+......+.|.++.......|.|.|.|..|..
T Consensus 17 ~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~---~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 81 (91)
T cd05740 17 DNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPR---LQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNM 81 (91)
T ss_pred cCCcEEEEEEeCCC-CCEEEEEECCEECCCCC---EEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCE
Confidence 35677888876432 22233322111111111 2233444579999999999999999999999864
No 59
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=94.00 E-value=0.66 Score=26.84 Aligned_cols=29 Identities=7% Similarity=0.020 Sum_probs=23.9
Q ss_pred ccEEEECCCCCCCEEEEEEEEEcCCcCCC
Q psy9139 80 YREFTLTQLKCGTHYKINIKLVNSIGESK 108 (197)
Q Consensus 80 ~~~~~i~~L~p~~~y~~~v~a~~~~g~~~ 108 (197)
...+.|.++.+.....|.|.+.|..|...
T Consensus 50 ~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~ 78 (85)
T cd05857 50 HWSLIMESVVPSDKGNYTCVVENEYGSIN 78 (85)
T ss_pred ceEEEEccCCcccCEEEEEEEEeCCCEEE
Confidence 34578888999889999999999998644
No 60
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=93.98 E-value=0.51 Score=26.69 Aligned_cols=30 Identities=7% Similarity=0.021 Sum_probs=25.7
Q ss_pred cEEEECCCCCCCEEEEEEEEEcCCcCCCCC
Q psy9139 81 REFTLTQLKCGTHYKINIKLVNSIGESKPS 110 (197)
Q Consensus 81 ~~~~i~~L~p~~~y~~~v~a~~~~g~~~~s 110 (197)
..+.|.++.+.....|.|.|.|..|....+
T Consensus 39 g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~ 68 (73)
T cd05852 39 GSLEILNITKLDEGSYTCFAENNRGKANST 68 (73)
T ss_pred CEEEECcCChhHCEEEEEEEECCCCceeEE
Confidence 468999999999999999999999876543
No 61
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=93.95 E-value=0.32 Score=27.77 Aligned_cols=29 Identities=10% Similarity=0.046 Sum_probs=25.0
Q ss_pred cEEEECCCCCCCEEEEEEEEEcCCcCCCC
Q psy9139 81 REFTLTQLKCGTHYKINIKLVNSIGESKP 109 (197)
Q Consensus 81 ~~~~i~~L~p~~~y~~~v~a~~~~g~~~~ 109 (197)
..+.|.++.+.....|.|.|.|..|....
T Consensus 41 ~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~ 69 (75)
T cd05892 41 VTLLIKNVNKKDAGWYTVSAVNEAGVATC 69 (75)
T ss_pred EEEEECCCChhhCEEEEEEEEcCcCeEEE
Confidence 36899999999999999999999986543
No 62
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=93.68 E-value=0.81 Score=27.19 Aligned_cols=32 Identities=16% Similarity=0.125 Sum_probs=26.6
Q ss_pred cccEEEECCCCCCCEEEEEEEEEcCCcCCCCC
Q psy9139 79 EYREFTLTQLKCGTHYKINIKLVNSIGESKPS 110 (197)
Q Consensus 79 ~~~~~~i~~L~p~~~y~~~v~a~~~~g~~~~s 110 (197)
....++|.++.......|.|.|.|..|....+
T Consensus 56 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 87 (95)
T cd05730 56 DGSEMTILDVDKLDEAEYTCIAENKAGEQEAE 87 (95)
T ss_pred CCCEEEECCCChhhCEEEEEEEEcCCCeEEEE
Confidence 34568999999999999999999999875443
No 63
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=93.50 E-value=0.88 Score=26.65 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=26.4
Q ss_pred CcccEEEECCCCCCCEEEEEEEEEcCCcCCC
Q psy9139 78 AEYREFTLTQLKCGTHYKINIKLVNSIGESK 108 (197)
Q Consensus 78 ~~~~~~~i~~L~p~~~y~~~v~a~~~~g~~~ 108 (197)
.....+.|.++.+.....|.|.|.|..|...
T Consensus 49 ~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~ 79 (86)
T cd05894 49 KDLSSFVIEGAEREDEGVYTITVTNPVGEDH 79 (86)
T ss_pred CCeEEEEECCCccCcCEEEEEEEEeCCCcEE
Confidence 3456799999999999999999999998643
No 64
>KOG4258|consensus
Probab=93.46 E-value=0.22 Score=41.46 Aligned_cols=41 Identities=29% Similarity=0.593 Sum_probs=32.5
Q ss_pred CCCCCCE-EEEEeecCCeEEEEeeeCCCCCccccEEEEEEEe
Q psy9139 26 SPPGVPN-ILLQSTTTHSISILWKPSYDGGAIITHYIVSYRD 66 (197)
Q Consensus 26 ~~P~~p~-~~~~~~~~~~~~l~W~~~~~~~~~i~~y~v~~~~ 66 (197)
..|.+|. ....+.+++.+.|.|.+|..+++.++.|.+.|+.
T Consensus 609 ~~PspPl~~ls~snsSsqi~l~W~pP~~pNG~lt~Ylv~wer 650 (1025)
T KOG4258|consen 609 DIPSPPLDVLSKSNSSSQILLKWKPPSQPNGNLTHYLVVWER 650 (1025)
T ss_pred CCCCCcchhhhccCcchheeEEecCCCCCCCceeEEEEEEEe
Confidence 5567775 4445556668999999999999999999999983
No 65
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=93.31 E-value=1 Score=26.97 Aligned_cols=30 Identities=10% Similarity=0.190 Sum_probs=26.0
Q ss_pred ccEEEECCCCCCCEEEEEEEEEcCCcCCCC
Q psy9139 80 YREFTLTQLKCGTHYKINIKLVNSIGESKP 109 (197)
Q Consensus 80 ~~~~~i~~L~p~~~y~~~v~a~~~~g~~~~ 109 (197)
...+.|.++.+.....|.|.|.|..|....
T Consensus 63 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 92 (98)
T cd05870 63 ESSLHIKDVKLSDSGRYDCEAASRIGGHQK 92 (98)
T ss_pred eeEEEEeeCCcCCCEEEEEEEeccCCccee
Confidence 357899999999999999999999997554
No 66
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=93.27 E-value=0.71 Score=26.18 Aligned_cols=28 Identities=11% Similarity=-0.013 Sum_probs=24.5
Q ss_pred cEEEECCCCCCCEEEEEEEEEcCCcCCC
Q psy9139 81 REFTLTQLKCGTHYKINIKLVNSIGESK 108 (197)
Q Consensus 81 ~~~~i~~L~p~~~y~~~v~a~~~~g~~~ 108 (197)
..+.|.++.+.....|.|.|.|..|...
T Consensus 41 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 68 (75)
T cd05744 41 ICLLIQNANKEDAGWYTVSAVNEAGVVS 68 (75)
T ss_pred EEEEECCCCcccCEEEEEEEEcCCCcEE
Confidence 4689999999999999999999998654
No 67
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=93.26 E-value=1 Score=26.72 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=24.9
Q ss_pred cEEEECCCCCCCEEEEEEEEEcCCcCCCC
Q psy9139 81 REFTLTQLKCGTHYKINIKLVNSIGESKP 109 (197)
Q Consensus 81 ~~~~i~~L~p~~~y~~~v~a~~~~g~~~~ 109 (197)
..+.|.++++.....|.|.+.|..|....
T Consensus 58 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 86 (92)
T cd05891 58 ASLTIKGVTSEDSGKYSINVKNKYGGETV 86 (92)
T ss_pred EEEEECCCChhhCEEEEEEEEeCCCceee
Confidence 46889999999999999999999887654
No 68
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=93.19 E-value=1 Score=26.51 Aligned_cols=32 Identities=22% Similarity=0.063 Sum_probs=27.1
Q ss_pred cEEEECCCCCCCEEEEEEEEEcCCcCCCCCCc
Q psy9139 81 REFTLTQLKCGTHYKINIKLVNSIGESKPSKT 112 (197)
Q Consensus 81 ~~~~i~~L~p~~~y~~~v~a~~~~g~~~~s~~ 112 (197)
..+.|.++.......|.|.|.|..|....+..
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~ 86 (90)
T cd05858 55 EVLYLRNVTFEDAGEYTCLAGNSIGISHHSAW 86 (90)
T ss_pred eEEEEccCCHHHCEEEEEEEEeCCCcccceEE
Confidence 57999999999999999999999997655433
No 69
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=92.92 E-value=1.2 Score=26.47 Aligned_cols=30 Identities=17% Similarity=0.242 Sum_probs=25.7
Q ss_pred ccEEEECCCCCCCEEEEEEEEEcCCcCCCC
Q psy9139 80 YREFTLTQLKCGTHYKINIKLVNSIGESKP 109 (197)
Q Consensus 80 ~~~~~i~~L~p~~~y~~~v~a~~~~g~~~~ 109 (197)
...+.|.++.......|.|.|.|..|....
T Consensus 61 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 90 (96)
T cd05732 61 VSSLTLKDVQLTDAGRYDCEASNRIGGDQQ 90 (96)
T ss_pred EEEEEECcCCcCcCEEeEEEEEeCCCCcEE
Confidence 457899999999999999999999987643
No 70
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=92.90 E-value=1.2 Score=26.54 Aligned_cols=30 Identities=7% Similarity=0.043 Sum_probs=25.6
Q ss_pred CcccEEEECCCCCCCEEEEEEEEEcCCcCC
Q psy9139 78 AEYREFTLTQLKCGTHYKINIKLVNSIGES 107 (197)
Q Consensus 78 ~~~~~~~i~~L~p~~~y~~~v~a~~~~g~~ 107 (197)
.....++|.++.......|+|.|.|..|..
T Consensus 53 g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 82 (92)
T cd05866 53 GVRSRLTIYNANIEDAGIYRCQATDAKGQT 82 (92)
T ss_pred CCeeEEEEecCChHHCEEEEEEEEcCCCcE
Confidence 334578999999999999999999998864
No 71
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=92.84 E-value=0.21 Score=28.30 Aligned_cols=15 Identities=27% Similarity=0.053 Sum_probs=12.3
Q ss_pred CCeeEEEEEEeCCCC
Q psy9139 1 MVGNYTCLADNIFGK 15 (197)
Q Consensus 1 ~~g~y~c~a~n~~G~ 15 (197)
++|.|+|.|.|..+.
T Consensus 47 D~G~YtC~a~~~~~~ 61 (72)
T cd07702 47 DAGIYTILLGIKQYN 61 (72)
T ss_pred HCEEEEEEEEccccc
Confidence 379999999998553
No 72
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=92.70 E-value=0.66 Score=26.13 Aligned_cols=29 Identities=10% Similarity=0.248 Sum_probs=24.9
Q ss_pred cEEEECCCCCCCEEEEEEEEEcCCcCCCC
Q psy9139 81 REFTLTQLKCGTHYKINIKLVNSIGESKP 109 (197)
Q Consensus 81 ~~~~i~~L~p~~~y~~~v~a~~~~g~~~~ 109 (197)
..+.|.++.+.....|.|.|.|..|....
T Consensus 40 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 68 (74)
T cd05745 40 GTLRISRVALHDQGQYECQAVNIVGSQRT 68 (74)
T ss_pred CeEEEeeCCHHhCEEEEEEEEeCCCceeE
Confidence 46899999999999999999999987543
No 73
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=92.66 E-value=0.55 Score=26.52 Aligned_cols=29 Identities=14% Similarity=0.115 Sum_probs=24.3
Q ss_pred cEEEECCCCCCCEEEEEEEEEcCCcCCCC
Q psy9139 81 REFTLTQLKCGTHYKINIKLVNSIGESKP 109 (197)
Q Consensus 81 ~~~~i~~L~p~~~y~~~v~a~~~~g~~~~ 109 (197)
..+.|.++.+.....|.|.|.|..|....
T Consensus 40 ~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~ 68 (75)
T cd05763 40 DVFFIVDVKIEDTGVYSCTAQNTAGSISA 68 (75)
T ss_pred CEEEEeeCCcccCEEEEEEEEcCCCEEEe
Confidence 46788999999999999999999886433
No 74
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=92.60 E-value=1.3 Score=26.17 Aligned_cols=71 Identities=8% Similarity=0.061 Sum_probs=40.7
Q ss_pred ecCCeEEEEeeeCCCCCccccEEEEEEEeCCCCcEEEEeCCcccEEEECCCCCCCEEEEEEEEEcCCcCCC
Q psy9139 38 TTTHSISILWKPSYDGGAIITHYIVSYRDRTEDWQSVHVDAEYREFTLTQLKCGTHYKINIKLVNSIGESK 108 (197)
Q Consensus 38 ~~~~~~~l~W~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~~~~g~~~ 108 (197)
.....+.|.|.....+...+.||+-...........+........+.|.++.......|.|.+.|..|...
T Consensus 16 ~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~ 86 (92)
T cd05747 16 SEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQE 86 (92)
T ss_pred eCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCCEe
Confidence 44566778876543222223333211111111112222233346789999999999999999999988643
No 75
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=92.47 E-value=1.2 Score=25.38 Aligned_cols=29 Identities=17% Similarity=-0.015 Sum_probs=24.9
Q ss_pred ccEEEECCCCCCCEEEEEEEEEcCCcCCC
Q psy9139 80 YREFTLTQLKCGTHYKINIKLVNSIGESK 108 (197)
Q Consensus 80 ~~~~~i~~L~p~~~y~~~v~a~~~~g~~~ 108 (197)
...+.|.++.+.....|.|.|.|..|...
T Consensus 37 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 65 (77)
T cd05760 37 ERTLTLRSAGPDDSGLYYCCAHNAFGSVC 65 (77)
T ss_pred CCEEEEeeCCcccCEEEEEEEEeCCCeEe
Confidence 34788999999999999999999998643
No 76
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=92.34 E-value=1.2 Score=25.14 Aligned_cols=34 Identities=9% Similarity=0.098 Sum_probs=27.1
Q ss_pred ccEEEECCCCCCCEEEEEEEEEcCCcCCCCCCce
Q psy9139 80 YREFTLTQLKCGTHYKINIKLVNSIGESKPSKTI 113 (197)
Q Consensus 80 ~~~~~i~~L~p~~~y~~~v~a~~~~g~~~~s~~~ 113 (197)
...+.|.++.......|.|.+.|..|.......+
T Consensus 38 ~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 71 (76)
T cd05736 38 GSELHISNVRYEDTGAYTCIAKNEAGVDEDISSL 71 (76)
T ss_pred CCEEEECcCCcccCEEEEEEEEcCCCCcceEEEE
Confidence 3468889999999999999999999876644333
No 77
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=92.30 E-value=1 Score=25.62 Aligned_cols=28 Identities=11% Similarity=-0.056 Sum_probs=24.6
Q ss_pred cEEEECCCCCCCEEEEEEEEEcCCcCCC
Q psy9139 81 REFTLTQLKCGTHYKINIKLVNSIGESK 108 (197)
Q Consensus 81 ~~~~i~~L~p~~~y~~~v~a~~~~g~~~ 108 (197)
..+.|.++.+.....|.|.|.|..|...
T Consensus 47 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 74 (81)
T cd05765 47 GQLVIYNAQPQDAGLYTCTARNSGGLLR 74 (81)
T ss_pred cEEEEccCCcccCEEEEEEEecCCceEE
Confidence 5689999999999999999999998643
No 78
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=91.90 E-value=1.6 Score=25.77 Aligned_cols=73 Identities=11% Similarity=0.052 Sum_probs=43.8
Q ss_pred cCCeEEEEeeeCCCCCccccEEEEEEEeCCCCcEEEEeCCcccEEEECCCCCCCEEEEEEEEEcC-CcCCCCCCceEe
Q psy9139 39 TTHSISILWKPSYDGGAIITHYIVSYRDRTEDWQSVHVDAEYREFTLTQLKCGTHYKINIKLVNS-IGESKPSKTIAA 115 (197)
Q Consensus 39 ~~~~~~l~W~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~~~-~g~~~~s~~~~~ 115 (197)
....++|.|.... +...|.+........+...........+.|..+.+.....|+|+..+. .+.+..|..+.+
T Consensus 15 ~G~~VtL~C~~~~----~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~~~~~S~~Sd~lel 88 (91)
T cd05751 15 LGKPVTLRCQGPY----GAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSGVALWSEPSDPLEL 88 (91)
T ss_pred CCCcEEEEEecCC----CCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECCCCccCCCCCcEEE
Confidence 4678889887642 234454433211111221112334556899999999899999999886 455666665543
No 79
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=91.75 E-value=1.6 Score=25.31 Aligned_cols=37 Identities=5% Similarity=0.022 Sum_probs=28.4
Q ss_pred cccEEEECCCCCCCEEEEEEEEEcCCcCCCCCCceEe
Q psy9139 79 EYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAA 115 (197)
Q Consensus 79 ~~~~~~i~~L~p~~~y~~~v~a~~~~g~~~~s~~~~~ 115 (197)
....+.|.+++......|.|.|.|..|....+..+.+
T Consensus 45 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V 81 (85)
T cd04970 45 SNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLIV 81 (85)
T ss_pred ccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEEE
Confidence 3457899999999999999999998876544433433
No 80
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=91.74 E-value=1.2 Score=25.06 Aligned_cols=30 Identities=10% Similarity=-0.031 Sum_probs=25.1
Q ss_pred ccEEEECCCCCCCEEEEEEEEEcCCcCCCC
Q psy9139 80 YREFTLTQLKCGTHYKINIKLVNSIGESKP 109 (197)
Q Consensus 80 ~~~~~i~~L~p~~~y~~~v~a~~~~g~~~~ 109 (197)
...+.|.++.......|.|.|.|..|....
T Consensus 40 ~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~ 69 (76)
T cd04978 40 GGTLILSNVQPNDTAVYQCNASNVHGYLLA 69 (76)
T ss_pred CCEEEECCCChhhCEEEEEEEEccCCeEEE
Confidence 456889999999999999999999886543
No 81
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=91.41 E-value=1.4 Score=24.69 Aligned_cols=29 Identities=10% Similarity=0.080 Sum_probs=25.0
Q ss_pred cEEEECCCCCCCEEEEEEEEEcCCcCCCC
Q psy9139 81 REFTLTQLKCGTHYKINIKLVNSIGESKP 109 (197)
Q Consensus 81 ~~~~i~~L~p~~~y~~~v~a~~~~g~~~~ 109 (197)
..+.|.++.+.....|.|.|.|..|....
T Consensus 39 ~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~ 67 (73)
T cd04969 39 GSLEILNVTKSDEGKYTCFAENFFGKANS 67 (73)
T ss_pred CeEEEccCChhHCEEEEEEEECCCCceEE
Confidence 46899999999999999999999987544
No 82
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=91.23 E-value=1.5 Score=25.78 Aligned_cols=33 Identities=21% Similarity=0.120 Sum_probs=27.0
Q ss_pred cEEEECCCCCCCEEEEEEEEEcCCcCCCCCCce
Q psy9139 81 REFTLTQLKCGTHYKINIKLVNSIGESKPSKTI 113 (197)
Q Consensus 81 ~~~~i~~L~p~~~y~~~v~a~~~~g~~~~s~~~ 113 (197)
..+.|.++.+.....|.|.|.|..|....+..+
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~sa~L 87 (90)
T cd04974 55 EVLYLRNVSFDDAGEYTCLAGNSIGPSHHSAWL 87 (90)
T ss_pred ceEEEeccccccCcEEEEEeecccCcccCCEEE
Confidence 457888899999999999999999986655444
No 83
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=91.13 E-value=0.9 Score=25.10 Aligned_cols=29 Identities=10% Similarity=0.237 Sum_probs=24.6
Q ss_pred ccEEEECCCCCCCEEEEEEEEEcCCcCCC
Q psy9139 80 YREFTLTQLKCGTHYKINIKLVNSIGESK 108 (197)
Q Consensus 80 ~~~~~i~~L~p~~~y~~~v~a~~~~g~~~ 108 (197)
...+.|.++.+.....|.|.|.|..|...
T Consensus 34 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 62 (69)
T cd05725 34 DKSLKIRNVTAGDEGSYTCEAENMVGKIE 62 (69)
T ss_pred CCEEEECcCChhHCEEEEEEEEcCCCcEE
Confidence 34689999999999999999999988643
No 84
>COG4733 Phage-related protein, tail component [Function unknown]
Probab=90.91 E-value=1.9 Score=36.20 Aligned_cols=91 Identities=14% Similarity=0.156 Sum_probs=53.9
Q ss_pred CcccEEEECCCCCCCEEEEEEEEEcCCcCCCCCC-ce--EeecCCCC--------------------------------C
Q psy9139 78 AEYREFTLTQLKCGTHYKINIKLVNSIGESKPSK-TI--AASTKGED--------------------------------Q 122 (197)
Q Consensus 78 ~~~~~~~i~~L~p~~~y~~~v~a~~~~g~~~~s~-~~--~~~t~~~~--------------------------------~ 122 (197)
.....+.+.+|-+| +|.++|+|.|..|...... .. .+..+..| +
T Consensus 657 t~~~~~~~~gi~~G-qY~i~VrAiN~~g~~~~~a~s~~f~i~g~~~Ppp~~~t~~a~~it~~~~l~v~dPt~~~d~~~se 735 (952)
T COG4733 657 TSAAGFDVEGIPAG-QYAIRVRAINVFEPNSPDATAYEFALNGKKVPPPKAMIYDAVIITLVIRLVVGDPTGAVDITSTE 735 (952)
T ss_pred ccccceeecCcCcc-ceEEEEEEeeccCCCCCCcceeEEEecCCCCCCCcccccceEEEEeeeeEEEecCCcceEEeeee
Confidence 34567899999996 8999999999998754433 22 22222111 1
Q ss_pred CCeeecCCCCCcc---cccce--EEEcCCCCCCeEEEEEEEEcCCCCCCcce
Q psy9139 123 TDWINIPLSNLDE---ALEMP--LVIENLLPATRYELTISAKNDAGSTNKNY 169 (197)
Q Consensus 123 ~~w~~~~~~~~~~---~~~~~--~~i~~L~p~t~Y~v~V~a~n~~G~~~~~~ 169 (197)
..+.......... ++... +.-.+|+++..|.|++++.|..|.+.+.+
T Consensus 736 i~~s~~~d~~~~Ar~LG~~~~~~~~~~~i~~g~~~~F~~R~Vn~vG~~~~~e 787 (952)
T COG4733 736 IRSAVIADGNFQARSLGNLNYPGLFSVGIQAGLTFWFRNRNVDLVGNNDKWE 787 (952)
T ss_pred eeeeccccchhHHhhhhccccccccccCcCCCceEEEEeeecccccccccce
Confidence 1111111100000 00111 12259999999999999999999877544
No 85
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=90.76 E-value=17 Score=35.39 Aligned_cols=28 Identities=21% Similarity=0.351 Sum_probs=21.2
Q ss_pred EEECCCCCCCEEEEEEEEEcCCcCCCCCC
Q psy9139 83 FTLTQLKCGTHYKINIKLVNSIGESKPSK 111 (197)
Q Consensus 83 ~~i~~L~p~~~y~~~v~a~~~~g~~~~s~ 111 (197)
..+.-.+|| .|.+.+.+.|..|....+.
T Consensus 1662 ~~vt~~~pG-~Y~VtL~aSN~vG~~t~s~ 1689 (2740)
T TIGR00864 1662 AKLNPLEAG-PCDIFLQAANLLGQATADC 1689 (2740)
T ss_pred eEEecCCCc-eEEEEEEEeecccceeeEE
Confidence 444557787 7999999999998875543
No 86
>KOG1948|consensus
Probab=90.55 E-value=7.2 Score=33.24 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=20.1
Q ss_pred cceEEEcCCCCCCeEEEEEEEE
Q psy9139 138 EMPLVIENLLPATRYELTISAK 159 (197)
Q Consensus 138 ~~~~~i~~L~p~t~Y~v~V~a~ 159 (197)
+..|.|+||.|+..|.++|.+.
T Consensus 945 nG~yRiRGL~Pdc~Y~V~vk~~ 966 (1165)
T KOG1948|consen 945 NGTYRIRGLLPDCEYQVHVKSY 966 (1165)
T ss_pred CCcEEEeccCCCceEEEEEeec
Confidence 4579999999999999999987
No 87
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=90.43 E-value=2 Score=24.22 Aligned_cols=28 Identities=14% Similarity=0.074 Sum_probs=24.4
Q ss_pred ccEEEECCCCCCCEEEEEEEEEcCCcCC
Q psy9139 80 YREFTLTQLKCGTHYKINIKLVNSIGES 107 (197)
Q Consensus 80 ~~~~~i~~L~p~~~y~~~v~a~~~~g~~ 107 (197)
...+.|.++.+.....|.|.|.|..|.-
T Consensus 40 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 67 (76)
T cd05867 40 SGALILTDVQPSDTAVYQCEARNRHGNL 67 (76)
T ss_pred CCEEEECCCChhhCEEEEEEEECCCCeE
Confidence 3568999999999999999999998864
No 88
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=90.27 E-value=2.4 Score=24.84 Aligned_cols=37 Identities=11% Similarity=0.089 Sum_probs=29.2
Q ss_pred cEEEECCCCCCCEEEEEEEEEcCCcCCCCCCceEeec
Q psy9139 81 REFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAAST 117 (197)
Q Consensus 81 ~~~~i~~L~p~~~y~~~v~a~~~~g~~~~s~~~~~~t 117 (197)
..+.|.++.......|.|.|.|..|.......+.+..
T Consensus 47 s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~V~~ 83 (88)
T cd05735 47 STLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQE 83 (88)
T ss_pred EEEEECCCCcccCEEEEEEEEcCCCcceEEEEEEEeC
Confidence 4688888999999999999999999876554555443
No 89
>KOG4228|consensus
Probab=90.19 E-value=3.6 Score=35.74 Aligned_cols=107 Identities=21% Similarity=0.231 Sum_probs=68.7
Q ss_pred eEEEEEEeCCCCceeEEEEEecCCCCCC-EEEEEeecCCeEEEEeeeCCCCCccccEEEEEEEe-CCCCcEEEEeCCccc
Q psy9139 4 NYTCLADNIFGKDDIYYQVTILSPPGVP-NILLQSTTTHSISILWKPSYDGGAIITHYIVSYRD-RTEDWQSVHVDAEYR 81 (197)
Q Consensus 4 ~y~c~a~n~~G~~~~~~~~~~~~~P~~p-~~~~~~~~~~~~~l~W~~~~~~~~~i~~y~v~~~~-~~~~~~~~~~~~~~~ 81 (197)
+|+|.+....|-....+.+.+..-|..+ ...+......+..+.|....- ....|.+.++. ..+ +..+.. ....
T Consensus 1 ~Y~~~~~~~~~~~~~~~~v~v~~~p~~~~~~~vt~~~~~~~~~~~~~~~t---~~~~y~v~~~~~~s~-~~~~~~-~~~~ 75 (1087)
T KOG4228|consen 1 NYTCLARSGLGPGELITYVRVNGGPPGPSTPNVTGSTATSWVQAELLGST---WPNYYQVIFKALSSG-YGYIDV-DLTT 75 (1087)
T ss_pred CeeeeecccCCCccceEEEEecCCCCCCCCcccccccccceeehhhccCC---ChhhhheeeeEeccC-cceeec-ccee
Confidence 5999999999987777777777555444 477777778888888887552 44667777762 222 333322 2233
Q ss_pred EEEECCCCCCCEEEEEEEEEcCCcCCCCCCceEeec
Q psy9139 82 EFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAAST 117 (197)
Q Consensus 82 ~~~i~~L~p~~~y~~~v~a~~~~g~~~~s~~~~~~t 117 (197)
.+.+..+.+...+.+ .+.|..|.+.++....-++
T Consensus 76 ~~s~~~~~~~~~~~~--~evnt~~~a~~~~~~~~rt 109 (1087)
T KOG4228|consen 76 RLSYPCLSPPSFLEL--VEVNTIGRAPFQCPVAPRT 109 (1087)
T ss_pred ecccCCCCCcchhhh--hhcccccccccccccCCcc
Confidence 366666777776766 6777777776655443333
No 90
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=90.14 E-value=1.8 Score=24.09 Aligned_cols=27 Identities=11% Similarity=0.050 Sum_probs=22.0
Q ss_pred EEECCCCCCCEEEEEEEEEcCCcCCCC
Q psy9139 83 FTLTQLKCGTHYKINIKLVNSIGESKP 109 (197)
Q Consensus 83 ~~i~~L~p~~~y~~~v~a~~~~g~~~~ 109 (197)
+.+.++.+.....|.|.|.|..|....
T Consensus 39 l~i~~v~~~D~G~Y~C~A~N~~G~~~~ 65 (71)
T cd05723 39 LQVLGLVKSDEGFYQCIAENDVGNVQA 65 (71)
T ss_pred EEEEcCCcccCEEEEEEEEcCCCEEEE
Confidence 556688888889999999999987543
No 91
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=90.10 E-value=2.3 Score=25.40 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=25.3
Q ss_pred ccEEEECCCCCCCEEEEEEEEEcCCcCCCC
Q psy9139 80 YREFTLTQLKCGTHYKINIKLVNSIGESKP 109 (197)
Q Consensus 80 ~~~~~i~~L~p~~~y~~~v~a~~~~g~~~~ 109 (197)
...+.|.++.......|.|.|.|..|....
T Consensus 62 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 91 (97)
T cd05869 62 VSSLTLKYIQYTDAGEYLCTASNTIGQDSQ 91 (97)
T ss_pred EEEEEEecCccCcCEEEEEEEecCCCCeeE
Confidence 356889999999999999999999987644
No 92
>KOG3632|consensus
Probab=90.05 E-value=0.43 Score=40.49 Aligned_cols=125 Identities=15% Similarity=0.104 Sum_probs=65.3
Q ss_pred EEEEeecCCeEEEEeeeCCCCC--ccccEEEEEEEeCCCCcEEEEeCCcccE--EEECCCCCCCEEEEEEEEEcCCcCCC
Q psy9139 33 ILLQSTTTHSISILWKPSYDGG--AIITHYIVSYRDRTEDWQSVHVDAEYRE--FTLTQLKCGTHYKINIKLVNSIGESK 108 (197)
Q Consensus 33 ~~~~~~~~~~~~l~W~~~~~~~--~~i~~y~v~~~~~~~~~~~~~~~~~~~~--~~i~~L~p~~~y~~~v~a~~~~g~~~ 108 (197)
+.++.....++.|.|++|..+. .++..|.+.... +...... .+..+. ...-++.. ..|.+.|.+..+.|.+.
T Consensus 584 ~~~vkqla~sv~vawepps~pP~~~~~~~~~~~v~~--elrq~l~-~gs~tka~~E~ld~~a-~s~~isvq~ltSrGsqd 659 (1335)
T KOG3632|consen 584 GAAVKQLAGSVHVAWEPPSSPPFTAPARMIGATVLM--ELRQTLY-AGSLTKAMQESLDNSA-HSGYISVQRLTSRGSQD 659 (1335)
T ss_pred hhhhhhhccceeeeccCCCCCCccccceeeeeecch--hhhhhcc-cccchHHHHhhccccC-CceeeehhhhhccCCCC
Confidence 5566677889999999975222 334444443321 1111111 111111 11222233 34666777777777665
Q ss_pred CCCceEeecCCCC----------------CCCeeecCCCCC------c-c-----cccceEEEcCCCCCCeEEEEEEEEc
Q psy9139 109 PSKTIAASTKGED----------------QTDWINIPLSNL------D-E-----ALEMPLVIENLLPATRYELTISAKN 160 (197)
Q Consensus 109 ~s~~~~~~t~~~~----------------~~~w~~~~~~~~------~-~-----~~~~~~~i~~L~p~t~Y~v~V~a~n 160 (197)
...++-......+ .+.|.....+.. . + .....|++.+|.|++.|.++|-|.-
T Consensus 660 ~lrc~Llvgg~a~vvpsqlrv~n~tqtSa~itwvp~nsn~~Hviyln~eE~~ps~a~~y~ytf~~lrpgt~y~a~vea~~ 739 (1335)
T KOG3632|consen 660 QLRCILLVGGAAPVVPSQLRVWNATQTSAMITWVPFNSNFLHVIYLNAEEPRPSVAEMYNYTFMRLRPGTDYWASVEAAL 739 (1335)
T ss_pred cceeeEeccccccccchhhhhhhhhchhhheeeeecCCCcceeeecCCccCCCchhhhhHHHHhccCCCCccceeccccc
Confidence 4433222211111 455644332110 0 0 2356789999999999999999875
Q ss_pred C
Q psy9139 161 D 161 (197)
Q Consensus 161 ~ 161 (197)
.
T Consensus 740 p 740 (1335)
T KOG3632|consen 740 P 740 (1335)
T ss_pred C
Confidence 4
No 93
>KOG3515|consensus
Probab=89.99 E-value=0.59 Score=38.70 Aligned_cols=61 Identities=25% Similarity=0.513 Sum_probs=51.4
Q ss_pred EEEEEEeCCCCceeEEEEEecCCCCCCE-EEEEeecCCeEEEEeeeCCCCCccccEEEEEEEe
Q psy9139 5 YTCLADNIFGKDDIYYQVTILSPPGVPN-ILLQSTTTHSISILWKPSYDGGAIITHYIVSYRD 66 (197)
Q Consensus 5 y~c~a~n~~G~~~~~~~~~~~~~P~~p~-~~~~~~~~~~~~l~W~~~~~~~~~i~~y~v~~~~ 66 (197)
..|++.|..|++..+..+....-|..|. +.+.......+.|.|.+.++++.+ ..|.+.+..
T Consensus 669 ~~c~t~n~lg~~~v~~~~~~~t~~~~~~n~~~~~~~~~~i~l~~~p~fdgg~~-q~f~~~~~~ 730 (741)
T KOG3515|consen 669 NGCTTQNLLGSDHVSGAIHSGTASVGPINLTYDNLTYSTISLEWMPGFDGGLQ-QRFFLKYYD 730 (741)
T ss_pred ceeeecccCCCccccceecCCcCCCCccceEeeeeeeeeeceeeeeccccccc-cceeeehhh
Confidence 6899999999998888887778888886 888889999999999999988766 556676653
No 94
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=89.80 E-value=2.4 Score=24.68 Aligned_cols=30 Identities=7% Similarity=0.034 Sum_probs=25.7
Q ss_pred ccEEEECCCCCCCEEEEEEEEEcCCcCCCC
Q psy9139 80 YREFTLTQLKCGTHYKINIKLVNSIGESKP 109 (197)
Q Consensus 80 ~~~~~i~~L~p~~~y~~~v~a~~~~g~~~~ 109 (197)
...+.|.++.......|.|.|.|..|....
T Consensus 52 ~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~ 81 (88)
T cd04968 52 GAVLKIPNIQFEDEGTYECEAENIKGKDTH 81 (88)
T ss_pred CCEEEECCCCcccCEEEEEEEEECCCcEEE
Confidence 457899999999999999999999987543
No 95
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=89.78 E-value=2.4 Score=24.06 Aligned_cols=28 Identities=7% Similarity=0.108 Sum_probs=20.3
Q ss_pred ccEEEECCCCC----CCEEEEEEEEEcCCcCC
Q psy9139 80 YREFTLTQLKC----GTHYKINIKLVNSIGES 107 (197)
Q Consensus 80 ~~~~~i~~L~p----~~~y~~~v~a~~~~g~~ 107 (197)
...+.|..+.+ .....|.|.|.|..|..
T Consensus 38 ~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~ 69 (77)
T cd05733 38 SGTLVIDNMNGGRAEDYEGEYQCYASNELGTA 69 (77)
T ss_pred CCEEEEeccCCCCCcCCCEEEEEEEEcCCCcE
Confidence 34566766644 45689999999999864
No 96
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=89.50 E-value=1.2 Score=25.95 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=26.3
Q ss_pred CCcccEEEECCCCCCCEEEEEEEEEcCCcCC
Q psy9139 77 DAEYREFTLTQLKCGTHYKINIKLVNSIGES 107 (197)
Q Consensus 77 ~~~~~~~~i~~L~p~~~y~~~v~a~~~~g~~ 107 (197)
......+.|.++.......|.|.+.|..|..
T Consensus 52 ~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~ 82 (90)
T PF07679_consen 52 DGGSSSLTIKNVTREDAGTYTCVASNSSGEA 82 (90)
T ss_dssp ETTEEEEEESSESGGGSEEEEEEEEETTEEE
T ss_pred ccceeEEccCCCChhhCEEEEEEEEECCCEE
Confidence 3467789999999999999999999987754
No 97
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=89.06 E-value=0.64 Score=28.32 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=17.6
Q ss_pred cceEEEcCCCCCCeEEEEEEEE
Q psy9139 138 EMPLVIENLLPATRYELTISAK 159 (197)
Q Consensus 138 ~~~~~i~~L~p~t~Y~v~V~a~ 159 (197)
...++|.+|.|++.|-|+|+|.
T Consensus 66 ~~~~~l~~L~p~t~YCv~V~~~ 87 (106)
T PF09294_consen 66 NSSVTLSDLKPGTNYCVSVQAF 87 (106)
T ss_dssp SEEEEEES--TTSEEEEEEEEE
T ss_pred CCEEEEeCCCCCCCEEEEEEEE
Confidence 4467999999999999999994
No 98
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=88.86 E-value=3.7 Score=24.94 Aligned_cols=30 Identities=20% Similarity=0.080 Sum_probs=25.4
Q ss_pred ccEEEECCCCCCCEEEEEEEEEcCCcCCCC
Q psy9139 80 YREFTLTQLKCGTHYKINIKLVNSIGESKP 109 (197)
Q Consensus 80 ~~~~~i~~L~p~~~y~~~v~a~~~~g~~~~ 109 (197)
...+.|..+.+.....|.|.|.|..|....
T Consensus 64 ~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~ 93 (101)
T cd04975 64 VSELKLVRLKESEAGTYTFLASNSDASKSL 93 (101)
T ss_pred EEEEEEeecCHhhCeeEEEEEECCCccEEE
Confidence 356889999999999999999999986543
No 99
>PHA02633 hypothetical protein; Provisional
Probab=88.78 E-value=0.94 Score=24.73 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=21.1
Q ss_pred CCeeEEEEEEeCCCCceeEEEEEecCCC
Q psy9139 1 MVGNYTCLADNIFGKDDIYYQVTILSPP 28 (197)
Q Consensus 1 ~~g~y~c~a~n~~G~~~~~~~~~~~~~P 28 (197)
.+|.|.|+..|.-=....++.+.|....
T Consensus 29 DSGiYiC~~rn~t~c~~~si~l~V~~~~ 56 (63)
T PHA02633 29 DSGIYMCITKNETYSDMMKFDLCICLRI 56 (63)
T ss_pred cCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence 4799999999876667777777765443
No 100
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=88.59 E-value=3.4 Score=24.23 Aligned_cols=37 Identities=5% Similarity=0.060 Sum_probs=30.0
Q ss_pred ccEEEECCCCCCCEEEEEEEEEcCCcCCCCCCceEee
Q psy9139 80 YREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAAS 116 (197)
Q Consensus 80 ~~~~~i~~L~p~~~y~~~v~a~~~~g~~~~s~~~~~~ 116 (197)
...+.|.+++......|.|.|.|..+.-..+..+.+.
T Consensus 46 ~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V~ 82 (85)
T cd05853 46 AGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLIVR 82 (85)
T ss_pred CCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEEEe
Confidence 4578999999999999999999999876666555554
No 101
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=88.13 E-value=1.9 Score=23.81 Aligned_cols=29 Identities=10% Similarity=0.121 Sum_probs=25.0
Q ss_pred cEEEECCCCCCCEEEEEEEEEcCCcCCCC
Q psy9139 81 REFTLTQLKCGTHYKINIKLVNSIGESKP 109 (197)
Q Consensus 81 ~~~~i~~L~p~~~y~~~v~a~~~~g~~~~ 109 (197)
..+.|.++.+.....|.|.|.|..|....
T Consensus 36 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 64 (69)
T cd05746 36 GYLAIRDVGVADQGRYECVARNTIGYASV 64 (69)
T ss_pred CEEEECcCChhhCEEEEEEEECCCCcEEE
Confidence 46899999999999999999999987543
No 102
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=87.78 E-value=1.6 Score=24.06 Aligned_cols=29 Identities=10% Similarity=0.212 Sum_probs=24.3
Q ss_pred ccEEEECCCCCCCEEEEEEEEEcCCcCCC
Q psy9139 80 YREFTLTQLKCGTHYKINIKLVNSIGESK 108 (197)
Q Consensus 80 ~~~~~i~~L~p~~~y~~~v~a~~~~g~~~ 108 (197)
...+.|.++.......|.|.|.|..|...
T Consensus 35 ~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~ 63 (71)
T cd05731 35 NKTLKIDNVSEEDDGEYRCTASNSLGSAR 63 (71)
T ss_pred CCEEEECCCCHHHCEEEEEEEEeCCceEE
Confidence 44688999999889999999999988643
No 103
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=87.68 E-value=3.3 Score=23.03 Aligned_cols=30 Identities=13% Similarity=0.200 Sum_probs=25.1
Q ss_pred cccEEEECCCCCCCEEEEEEEEEcCCcCCC
Q psy9139 79 EYREFTLTQLKCGTHYKINIKLVNSIGESK 108 (197)
Q Consensus 79 ~~~~~~i~~L~p~~~y~~~v~a~~~~g~~~ 108 (197)
....+.|..+.+.....|.|.|.|..|...
T Consensus 41 ~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 70 (75)
T cd05750 41 KNSELQINKAKLADSGEYTCVVENILGNDT 70 (75)
T ss_pred ceEEEEEccCCcccCeEEEEEEEEcCCcee
Confidence 345688999999999999999999998643
No 104
>KOG4152|consensus
Probab=86.74 E-value=1.3 Score=35.18 Aligned_cols=33 Identities=15% Similarity=0.297 Sum_probs=27.1
Q ss_pred EcCCCCCCeEEEEEEEEcCCCCCCcceEEEEee
Q psy9139 143 IENLLPATRYELTISAKNDAGSTNKNYVFATLS 175 (197)
Q Consensus 143 i~~L~p~t~Y~v~V~a~n~~G~~~~~~~~~t~~ 175 (197)
-..|-+|+.|+|+|.|.|..|.++.+......+
T Consensus 651 k~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kT 683 (830)
T KOG4152|consen 651 KTSLVTGQAYRFRVTAINGKGPGPASTILKLKT 683 (830)
T ss_pred ccccccccceeeeeeeeeccCCCchhhheeeee
Confidence 347889999999999999999999766555554
No 105
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=86.68 E-value=4.1 Score=23.04 Aligned_cols=30 Identities=7% Similarity=0.040 Sum_probs=24.8
Q ss_pred cEEEECCCCCCCEEEEEEEEEcCCcCCCCC
Q psy9139 81 REFTLTQLKCGTHYKINIKLVNSIGESKPS 110 (197)
Q Consensus 81 ~~~~i~~L~p~~~y~~~v~a~~~~g~~~~s 110 (197)
..+.+.++++.....|+|.|.|..|....+
T Consensus 41 ~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~ 70 (76)
T cd05868 41 DTIIFSKVQERSSAVYQCNASNEYGYLLAN 70 (76)
T ss_pred CEEEECCCCHhhCEEEEEEEEcCCCEEEEE
Confidence 357788999999999999999999865443
No 106
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=86.37 E-value=4.4 Score=23.05 Aligned_cols=27 Identities=15% Similarity=0.063 Sum_probs=22.2
Q ss_pred cEEEECCCCCCCEEEEEEEEEcCCcCC
Q psy9139 81 REFTLTQLKCGTHYKINIKLVNSIGES 107 (197)
Q Consensus 81 ~~~~i~~L~p~~~y~~~v~a~~~~g~~ 107 (197)
..+.|.++.+.....|.|.+.|..|..
T Consensus 51 ~~l~i~~~~~~d~g~Y~C~~~n~~g~~ 77 (85)
T cd05729 51 WTLILESVVPSDSGKYTCIVENKYGSI 77 (85)
T ss_pred EEEEEeECCcccCEEEEEEEEECCceE
Confidence 457788899998899999999988753
No 107
>COG4733 Phage-related protein, tail component [Function unknown]
Probab=86.23 E-value=3.8 Score=34.53 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=32.8
Q ss_pred cceEEEcCCCCCCeEEEEEEEEcCCCCCCc---ceEEEEeeeCCCcCCCCCCC
Q psy9139 138 EMPLVIENLLPATRYELTISAKNDAGSTNK---NYVFATLSVNGGKAFHSWSP 187 (197)
Q Consensus 138 ~~~~~i~~L~p~t~Y~v~V~a~n~~G~~~~---~~~~~t~~~~~~~~~p~~~~ 187 (197)
...|.+++|.+| .|.++|+|.|..|.... +..+ .+.+...||+.+-
T Consensus 659 ~~~~~~~gi~~G-qY~i~VrAiN~~g~~~~~a~s~~f---~i~g~~~Ppp~~~ 707 (952)
T COG4733 659 AAGFDVEGIPAG-QYAIRVRAINVFEPNSPDATAYEF---ALNGKKVPPPKAM 707 (952)
T ss_pred ccceeecCcCcc-ceEEEEEEeeccCCCCCCcceeEE---EecCCCCCCCccc
Confidence 567999999995 99999999999987653 3444 4445444554443
No 108
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=86.08 E-value=4.4 Score=24.30 Aligned_cols=30 Identities=17% Similarity=0.089 Sum_probs=24.7
Q ss_pred ccEEEECCCCCCCEEEEEEEEEcCC-cCCCC
Q psy9139 80 YREFTLTQLKCGTHYKINIKLVNSI-GESKP 109 (197)
Q Consensus 80 ~~~~~i~~L~p~~~y~~~v~a~~~~-g~~~~ 109 (197)
...+.|.++.+.....|.|.|.|.. |....
T Consensus 59 ~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~ 89 (96)
T cd05865 59 SSTLTIYNANIDDAGIYKCVVSNEDEGESEA 89 (96)
T ss_pred ceEEEEeccChhhCEEEEEEEEcCCCCcEEE
Confidence 3568999999999999999999987 54433
No 109
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=85.90 E-value=2.2 Score=23.72 Aligned_cols=29 Identities=14% Similarity=0.111 Sum_probs=25.0
Q ss_pred ccEEEECCCCCCCEEEEEEEEEcCCcCCC
Q psy9139 80 YREFTLTQLKCGTHYKINIKLVNSIGESK 108 (197)
Q Consensus 80 ~~~~~i~~L~p~~~y~~~v~a~~~~g~~~ 108 (197)
...+.|.++.+.....|.|.|.|..|...
T Consensus 35 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 63 (71)
T cd05876 35 NKTLQLDNVLESDDGEYVCTAENSEGSAR 63 (71)
T ss_pred CCEEEEcccCHHhCEEEEEEEEcCCCeEE
Confidence 45788999999999999999999998654
No 110
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=85.77 E-value=5.4 Score=23.56 Aligned_cols=28 Identities=7% Similarity=-0.037 Sum_probs=24.1
Q ss_pred cccEEEECCCCCCCEEEEEEEEEcCCcC
Q psy9139 79 EYREFTLTQLKCGTHYKINIKLVNSIGE 106 (197)
Q Consensus 79 ~~~~~~i~~L~p~~~y~~~v~a~~~~g~ 106 (197)
....++|.++.+.....|.|.|.|..|.
T Consensus 55 ~~~~L~I~~v~~~D~G~Y~C~A~N~~g~ 82 (92)
T cd04977 55 VRSTLTIYNANIEDAGIYKCVATDAKGT 82 (92)
T ss_pred CEEEEEEecCCcccCEEEEEEEEcCCCC
Confidence 3457999999999999999999998654
No 111
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=85.60 E-value=4.8 Score=22.86 Aligned_cols=27 Identities=7% Similarity=0.015 Sum_probs=19.0
Q ss_pred cEEEECCCCCC----CEEEEEEEEEcCCcCC
Q psy9139 81 REFTLTQLKCG----THYKINIKLVNSIGES 107 (197)
Q Consensus 81 ~~~~i~~L~p~----~~y~~~v~a~~~~g~~ 107 (197)
..+.|..+.+. ....|.|.|.|..|..
T Consensus 39 g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~ 69 (77)
T cd05874 39 GTLVINIMNGEKAEAYEGVYQCTARNERGAA 69 (77)
T ss_pred ceEEEeccccCCCCCCCEEEEEEEEcCCCeE
Confidence 45566555542 4688999999998864
No 112
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=85.35 E-value=40 Score=33.19 Aligned_cols=105 Identities=14% Similarity=0.173 Sum_probs=54.1
Q ss_pred CeeEEE--EEEeCCCCceeEEEEEecCCCCCCEEEEEeec-----CCeEEEEeeeCCCCCccccEEEEEEEeCCCCcEEE
Q psy9139 2 VGNYTC--LADNIFGKDDIYYQVTILSPPGVPNILLQSTT-----THSISILWKPSYDGGAIITHYIVSYRDRTEDWQSV 74 (197)
Q Consensus 2 ~g~y~c--~a~n~~G~~~~~~~~~~~~~P~~p~~~~~~~~-----~~~~~l~W~~~~~~~~~i~~y~v~~~~~~~~~~~~ 74 (197)
.|.|.+ .|.|.+|+...++.+.|+.+-.-..+...... .....+.|......+.++ .|...+......
T Consensus 1753 ~G~y~VtVta~N~vss~~~s~~V~VqepV~GL~i~~~~~~~~~~~~ag~~v~F~a~vstGsnV-sw~W~f~~g~s~---- 1827 (2740)
T TIGR00864 1753 AGLHLVTMKAFNELGSANASEEVDVQEPISGLKIRAADAGEQNFFAADSSVCFQGELATGTNV-SWCWAIDGGSSK---- 1827 (2740)
T ss_pred CceEEEEEEEEccccccceeEEEEEEeccccceEecCCCCcccceecCcEEEEEEEccCCCee-EEEEEeCCCCcc----
Confidence 366766 56799998888888888876654432221111 122334443322112232 233222111100
Q ss_pred EeCCcccEEEECCCCCCCEEEEEEEEEcCCcCCCCCCceEee
Q psy9139 75 HVDAEYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAAS 116 (197)
Q Consensus 75 ~~~~~~~~~~i~~L~p~~~y~~~v~a~~~~g~~~~s~~~~~~ 116 (197)
.. .....+-.++| .|.+.+.|.|..+....+..+.++
T Consensus 1828 --~g--k~v~~Tf~~aG-~ytV~L~AsN~vs~~~~s~~~~VQ 1864 (2740)
T TIGR00864 1828 --MG--KHACMTFPDAG-TFAIRLNASNAVSGKSASREFFAE 1864 (2740)
T ss_pred --cc--ceeEEecCCCe-EEEEEEEEEcccCcceeeeeEEEE
Confidence 11 12233345666 789999999998776655444443
No 113
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=85.23 E-value=1.5 Score=25.44 Aligned_cols=16 Identities=13% Similarity=-0.097 Sum_probs=13.5
Q ss_pred CCeeEEEEEEeCCCCc
Q psy9139 1 MVGNYTCLADNIFGKD 16 (197)
Q Consensus 1 ~~g~y~c~a~n~~G~~ 16 (197)
+.+.|+|.|.|..+..
T Consensus 54 dg~~~~C~A~n~a~~~ 69 (80)
T cd05885 54 DGAILSCEASHPALVS 69 (80)
T ss_pred CCcEEEEEEEChhhCC
Confidence 4689999999998854
No 114
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=85.16 E-value=3.7 Score=22.76 Aligned_cols=50 Identities=16% Similarity=0.112 Sum_probs=34.0
Q ss_pred CCCCeeecCCCCCcccccceEEEcCCCCCCeEEEEEEEEcCCCCCCcceE
Q psy9139 121 DQTDWINIPLSNLDEALEMPLVIENLLPATRYELTISAKNDAGSTNKNYV 170 (197)
Q Consensus 121 ~~~~w~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~n~~G~~~~~~~ 170 (197)
|...|.+....+........+.|.++.+...-.+.+.|.|..|.-..+..
T Consensus 13 P~v~W~kdg~~l~~~~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~ 62 (67)
T cd05863 13 PEFQWYKDGKLISGKHSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRIS 62 (67)
T ss_pred CEEEEEECCEECcccCCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEE
Confidence 35667655433321112457999999998888999999999996554433
No 115
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=84.22 E-value=5.5 Score=22.32 Aligned_cols=27 Identities=15% Similarity=0.113 Sum_probs=23.2
Q ss_pred cEEEECCCCCCCEEEEEEEEEcCCcCC
Q psy9139 81 REFTLTQLKCGTHYKINIKLVNSIGES 107 (197)
Q Consensus 81 ~~~~i~~L~p~~~y~~~v~a~~~~g~~ 107 (197)
..+.|.+++......|.|.|.|..|..
T Consensus 38 g~L~i~~~~~~D~G~Y~C~a~N~~G~~ 64 (74)
T cd05738 38 GALQIENSEESDQGKYECVATNSAGTR 64 (74)
T ss_pred cEEEECCCChhhCEEEEEEEECCCCce
Confidence 357889999999999999999999863
No 116
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=83.93 E-value=0.81 Score=27.01 Aligned_cols=13 Identities=31% Similarity=0.552 Sum_probs=10.9
Q ss_pred CCeeEEEEEEeCC
Q psy9139 1 MVGNYTCLADNIF 13 (197)
Q Consensus 1 ~~g~y~c~a~n~~ 13 (197)
++|.|+|.|.+..
T Consensus 59 DsG~Y~C~a~e~~ 71 (87)
T cd05873 59 DAGRYQCLSVEKS 71 (87)
T ss_pred HCEEEEEEEEecc
Confidence 4799999998863
No 117
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=82.59 E-value=3.8 Score=22.84 Aligned_cols=28 Identities=11% Similarity=0.074 Sum_probs=24.3
Q ss_pred ccEEEECCCCCCCEEEEEEEEEcCCcCC
Q psy9139 80 YREFTLTQLKCGTHYKINIKLVNSIGES 107 (197)
Q Consensus 80 ~~~~~i~~L~p~~~y~~~v~a~~~~g~~ 107 (197)
...+.|.++.+.....|.|.|.|..|..
T Consensus 34 ~~~L~I~~v~~~D~G~YtC~a~N~~g~~ 61 (71)
T cd04976 34 GHSLTIKDVTEEDAGNYTVVLTNKQAKL 61 (71)
T ss_pred CCEEEECcCCHHHCEEEEEEEEcCCccE
Confidence 4578999999999999999999988754
No 118
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=81.93 E-value=5.6 Score=23.00 Aligned_cols=27 Identities=15% Similarity=0.103 Sum_probs=23.3
Q ss_pred cEEEECCCCCCCEEEEEEEEEcCCcCC
Q psy9139 81 REFTLTQLKCGTHYKINIKLVNSIGES 107 (197)
Q Consensus 81 ~~~~i~~L~p~~~y~~~v~a~~~~g~~ 107 (197)
..+.|.++.......|.|.|.|..|..
T Consensus 51 ~~L~i~~~~~~D~G~Y~C~a~N~~G~~ 77 (85)
T cd05728 51 GDLRITKLSLSDSGMYQCVAENKHGTI 77 (85)
T ss_pred CEEEEeeCCHHHCEEEEEEEECCCCeE
Confidence 468888999999999999999998864
No 119
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=81.72 E-value=9.7 Score=23.37 Aligned_cols=29 Identities=17% Similarity=0.124 Sum_probs=22.8
Q ss_pred cEEEECCCC-CCCEEEEEEEEEcCCcCCCC
Q psy9139 81 REFTLTQLK-CGTHYKINIKLVNSIGESKP 109 (197)
Q Consensus 81 ~~~~i~~L~-p~~~y~~~v~a~~~~g~~~~ 109 (197)
..+.|.++. ......|.|.|.|..|....
T Consensus 69 s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~ 98 (109)
T cd05773 69 SILTIINVSAALDYALFTCTAHNSLGEDSL 98 (109)
T ss_pred eEEEECcCCccCCCEEEEEEEEeCCccCcE
Confidence 468888886 46677899999999987643
No 120
>KOG4228|consensus
Probab=81.48 E-value=7.3 Score=33.99 Aligned_cols=128 Identities=13% Similarity=0.110 Sum_probs=74.4
Q ss_pred EeecCCeEEEEeeeCCCCCccccEEEEEEEeCCCCcEEEEeCCcccEEEECCCCCCCEEEEEEEEEcCCcCCCCCCceEe
Q psy9139 36 QSTTTHSISILWKPSYDGGAIITHYIVSYRDRTEDWQSVHVDAEYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAA 115 (197)
Q Consensus 36 ~~~~~~~~~l~W~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~~~~g~~~~s~~~~~ 115 (197)
...+...++++|.++.. ..+..|++.+.+.+..................++.|-..+.+.+.+....+.+.....+..
T Consensus 173 ~~~~~~~it~~w~~~~~--~~~~~ykl~~~~~d~~~~~~v~~~~~~~~~t~~~~~~~~~~~~~ae~~~~~~~~~~a~i~~ 250 (1087)
T KOG4228|consen 173 EEEEYTTITGSWSPPHA--VSLDTYKLLHLDPDTGYEISVTLTPPGSGGTGDLGPPSISRFKCAEPDRGPLGSSTAEIEA 250 (1087)
T ss_pred cceEEEEEEecCCCCCc--ccchhhhhhhcCCcccceeeeeccCCCCCcccCCCCcccccccccCccccccCCCCcceEE
Confidence 55667788999998652 2345677766643332222222223334455677888888888888777666665555555
Q ss_pred ecCCCC---------------CCCeeecCCCCCcc---cccceEEEcCCCCCCeEEEEEEEEcCCCCCC
Q psy9139 116 STKGED---------------QTDWINIPLSNLDE---ALEMPLVIENLLPATRYELTISAKNDAGSTN 166 (197)
Q Consensus 116 ~t~~~~---------------~~~w~~~~~~~~~~---~~~~~~~i~~L~p~t~Y~v~V~a~n~~G~~~ 166 (197)
++.... ...|.......+.. . .....+.++.|.+.|.+.+.+....|..+
T Consensus 251 r~~~s~~~~~~~~~~~~~~~~~~t~~~~~~~~S~~~v~~-~~~~~i~~~~p~~~~~~~it~~~~~~g~~ 318 (1087)
T KOG4228|consen 251 RQLQSVSKKNFETKHVFKNLVPGTWESFSNYASTTNVSG-RSFPLIVNLNPETEYSFVITVRLSSGGAP 318 (1087)
T ss_pred EehhhhhccccccceeecccCCceeeeeecccccCcccC-CCcceeccCCCcccccceeeccccCCCee
Confidence 443222 33343322221111 1 22277888999999999988887555544
No 121
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=81.27 E-value=8 Score=22.13 Aligned_cols=28 Identities=11% Similarity=0.122 Sum_probs=24.2
Q ss_pred ccEEEECCCCCCCEEEEEEEEEcCCcCC
Q psy9139 80 YREFTLTQLKCGTHYKINIKLVNSIGES 107 (197)
Q Consensus 80 ~~~~~i~~L~p~~~y~~~v~a~~~~g~~ 107 (197)
...+.|.++.+.....|.|.+.|..|..
T Consensus 50 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 77 (86)
T cd05724 50 DGNLLIAEARKSDEGTYKCVATNMVGER 77 (86)
T ss_pred CCEEEEeECCcccCEEEEEEEEeccCce
Confidence 3468899999999999999999998864
No 122
>PF11344 DUF3146: Protein of unknown function (DUF3146); InterPro: IPR021492 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=79.85 E-value=1.6 Score=24.70 Aligned_cols=14 Identities=43% Similarity=0.650 Sum_probs=12.7
Q ss_pred CCCCCCeEEEEEEE
Q psy9139 145 NLLPATRYELTISA 158 (197)
Q Consensus 145 ~L~p~t~Y~v~V~a 158 (197)
.|+||.+|.|.|+|
T Consensus 66 ~LEpGgdY~Ftira 79 (80)
T PF11344_consen 66 QLEPGGDYSFTIRA 79 (80)
T ss_pred eccCCCceEEEEec
Confidence 57999999999997
No 123
>KOG4152|consensus
Probab=79.07 E-value=13 Score=29.86 Aligned_cols=32 Identities=25% Similarity=0.428 Sum_probs=27.8
Q ss_pred CCCCCCCEEEEEEEEEcCCcCCCCCCceEeec
Q psy9139 86 TQLKCGTHYKINIKLVNSIGESKPSKTIAAST 117 (197)
Q Consensus 86 ~~L~p~~~y~~~v~a~~~~g~~~~s~~~~~~t 117 (197)
..|-+|+.|.|+|.+.|..|.+.++....+.|
T Consensus 652 ~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kT 683 (830)
T KOG4152|consen 652 TSLVTGQAYRFRVTAINGKGPGPASTILKLKT 683 (830)
T ss_pred cccccccceeeeeeeeeccCCCchhhheeeee
Confidence 56889999999999999999999888776655
No 124
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=78.79 E-value=9.5 Score=21.47 Aligned_cols=28 Identities=25% Similarity=0.217 Sum_probs=23.8
Q ss_pred ccEEEECCCCCCCEEEEEEEEEcCCcCC
Q psy9139 80 YREFTLTQLKCGTHYKINIKLVNSIGES 107 (197)
Q Consensus 80 ~~~~~i~~L~p~~~y~~~v~a~~~~g~~ 107 (197)
...+.|.++.+.....|.|.+.|..|..
T Consensus 47 ~~~L~i~~v~~~D~G~Y~C~a~N~~G~~ 74 (82)
T cd05856 47 KWTLSLKNLKPEDSGKYTCHVSNRAGEI 74 (82)
T ss_pred eEEEEEccCChhhCEEEEEEEEcCCccE
Confidence 3568889999999999999999998853
No 125
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=77.87 E-value=3.3 Score=23.48 Aligned_cols=31 Identities=29% Similarity=0.199 Sum_probs=26.1
Q ss_pred eEEEcCCCCCCeEEEEEEEEcCCCCCCcceE
Q psy9139 140 PLVIENLLPATRYELTISAKNDAGSTNKNYV 170 (197)
Q Consensus 140 ~~~i~~L~p~t~Y~v~V~a~n~~G~~~~~~~ 170 (197)
.+.|.++++.....+.+.|.|..|....+..
T Consensus 42 ~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~ 72 (75)
T cd05893 42 CLLIQGATKEDAGWYTVSAKNEAGIVSCTAR 72 (75)
T ss_pred EEEECCCCHHHCEEEEEEEEcCCCEEEEEEE
Confidence 4789999999999999999999998765443
No 126
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=77.75 E-value=13 Score=22.49 Aligned_cols=30 Identities=10% Similarity=-0.092 Sum_probs=25.3
Q ss_pred cEEEECCCCCCCEEEEEEEEEcCCcCCCCC
Q psy9139 81 REFTLTQLKCGTHYKINIKLVNSIGESKPS 110 (197)
Q Consensus 81 ~~~~i~~L~p~~~y~~~v~a~~~~g~~~~s 110 (197)
..+.|..+.+.....|.|.|.|..|....+
T Consensus 65 s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t 94 (101)
T cd05859 65 SKLKLIRAKEEDSGLYTALAQNEDAVKSYT 94 (101)
T ss_pred cEEEEeeCCHHHCEEEEEEEEcCCceEEEE
Confidence 568999999999999999999998875443
No 127
>KOG0613|consensus
Probab=77.33 E-value=15 Score=32.64 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=25.7
Q ss_pred cceEEEcCCCCCCeEEEEEEEEcCCCCCCc
Q psy9139 138 EMPLVIENLLPATRYELTISAKNDAGSTNK 167 (197)
Q Consensus 138 ~~~~~i~~L~p~t~Y~v~V~a~n~~G~~~~ 167 (197)
...+.+.++.++..|..++.|.|..|....
T Consensus 392 s~~~~~~~~~~~e~~~~~~~a~n~~g~~~~ 421 (1205)
T KOG0613|consen 392 SHTYTIKDAGPGEGYFTRVPAVNKGGTEQT 421 (1205)
T ss_pred CcchhhhhcCcccccccccceeccCCcccc
Confidence 456788899999999999999999997663
No 128
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=77.03 E-value=6.8 Score=21.79 Aligned_cols=33 Identities=27% Similarity=0.293 Sum_probs=26.5
Q ss_pred cceEEEcCCCCCCeEEEEEEEEcCCCCCCcceE
Q psy9139 138 EMPLVIENLLPATRYELTISAKNDAGSTNKNYV 170 (197)
Q Consensus 138 ~~~~~i~~L~p~t~Y~v~V~a~n~~G~~~~~~~ 170 (197)
...+.|.++.+...-.+.+.|.|..|....+..
T Consensus 39 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 71 (74)
T cd05748 39 STSLVIKNAERSDSGKYTLTLKNPAGEKSATIN 71 (74)
T ss_pred eEEEEECCCCcCcCEEEEEEEECCCccEEEEEE
Confidence 346888899998889999999999987655443
No 129
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=76.46 E-value=7.2 Score=22.79 Aligned_cols=33 Identities=21% Similarity=0.161 Sum_probs=27.4
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCCCCcceEE
Q psy9139 139 MPLVIENLLPATRYELTISAKNDAGSTNKNYVF 171 (197)
Q Consensus 139 ~~~~i~~L~p~t~Y~v~V~a~n~~G~~~~~~~~ 171 (197)
..+.|.++.+.....+.+.|.|..|.......+
T Consensus 53 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l 85 (88)
T cd05851 53 AVLKIFNIQPEDEGTYECEAENIKGKDKHQARV 85 (88)
T ss_pred CEEEECcCChhhCEEEEEEEEcCCCceEEEEEE
Confidence 468899999999999999999999987655443
No 130
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=76.05 E-value=12 Score=21.38 Aligned_cols=32 Identities=9% Similarity=-0.005 Sum_probs=26.6
Q ss_pred ccEEEECCCCCCCEEEEEEEEEcCCcCCCCCC
Q psy9139 80 YREFTLTQLKCGTHYKINIKLVNSIGESKPSK 111 (197)
Q Consensus 80 ~~~~~i~~L~p~~~y~~~v~a~~~~g~~~~s~ 111 (197)
...+.|.++++.....|.|.+.|..|....+.
T Consensus 48 ~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~ 79 (84)
T cd05742 48 SSTLTIPNATLKDSGTYTCAASSGTMDQKEST 79 (84)
T ss_pred EEEEEECCCChhhCEEEEEEEccCCCceEEEE
Confidence 34689999999999999999999988765443
No 131
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=76.05 E-value=12 Score=21.20 Aligned_cols=27 Identities=7% Similarity=-0.032 Sum_probs=18.3
Q ss_pred cEEEECCCC---CC-CEEEEEEEEEcCCcCC
Q psy9139 81 REFTLTQLK---CG-THYKINIKLVNSIGES 107 (197)
Q Consensus 81 ~~~~i~~L~---p~-~~y~~~v~a~~~~g~~ 107 (197)
..+.|..+. +. ....|.|.|.|..|..
T Consensus 39 ~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~ 69 (77)
T cd05875 39 GTLVIDFSGGGRPEDYEGEYQCFARNNLGTA 69 (77)
T ss_pred ceEEEeccCCCCCCCCCEEEEEEEEeccceE
Confidence 456665542 22 3678999999999853
No 132
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=75.15 E-value=13 Score=21.33 Aligned_cols=30 Identities=7% Similarity=0.008 Sum_probs=25.1
Q ss_pred ccEEEECCCCCCCEEEEEEEEEcCCcCCCC
Q psy9139 80 YREFTLTQLKCGTHYKINIKLVNSIGESKP 109 (197)
Q Consensus 80 ~~~~~i~~L~p~~~y~~~v~a~~~~g~~~~ 109 (197)
...+.|.++.+.....|.|.|.|..|....
T Consensus 45 ~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~ 74 (81)
T cd04971 45 HGCLQFDNPTHVNNGNYTLVASNEYGQDSK 74 (81)
T ss_pred EEEEEECCCCcccCeEEEEEEEeCCCCeee
Confidence 345888999999999999999999987543
No 133
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=74.91 E-value=12 Score=21.84 Aligned_cols=35 Identities=20% Similarity=0.064 Sum_probs=27.0
Q ss_pred eEEEcCCCCCCeEEEEEEEEcCCCCCCcceEEEEe
Q psy9139 140 PLVIENLLPATRYELTISAKNDAGSTNKNYVFATL 174 (197)
Q Consensus 140 ~~~i~~L~p~t~Y~v~V~a~n~~G~~~~~~~~~t~ 174 (197)
.+.|.++++...-.+.+.|.|..|.......+.+.
T Consensus 48 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 82 (90)
T cd05726 48 DLTITNVQRSDVGYYICQTLNVAGSILTKAYLEVT 82 (90)
T ss_pred eEEEeeCChhhCEEEEEEEEcCCCceEEEEEEEEe
Confidence 47788888887888999999999987665555444
No 134
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=74.78 E-value=15 Score=21.74 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=21.0
Q ss_pred cEEEECCC-CCCCEEEEEEEEEcCCcCC
Q psy9139 81 REFTLTQL-KCGTHYKINIKLVNSIGES 107 (197)
Q Consensus 81 ~~~~i~~L-~p~~~y~~~v~a~~~~g~~ 107 (197)
..+.|.++ .+.....|+|.|.|..|..
T Consensus 58 g~L~i~~~~~~~D~G~Y~C~A~N~~G~~ 85 (94)
T cd05848 58 GNLIISNPSEVKDSGRYQCLATNSIGSI 85 (94)
T ss_pred CeEEEccCCccCcCEEEEEEEEcCCCeE
Confidence 35677776 4577889999999999864
No 135
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=74.62 E-value=15 Score=21.80 Aligned_cols=28 Identities=7% Similarity=-0.266 Sum_probs=23.2
Q ss_pred ccEEEECCCCCCCEEEEEEEEEcCCcCC
Q psy9139 80 YREFTLTQLKCGTHYKINIKLVNSIGES 107 (197)
Q Consensus 80 ~~~~~i~~L~p~~~y~~~v~a~~~~g~~ 107 (197)
...+.|....+.....|.|.+.|..|..
T Consensus 59 ~~~L~I~~~~~~DsG~Y~C~~~N~~g~~ 86 (94)
T cd05756 59 KDLLWFLPAALEDSGLYTCVVRNSTYCM 86 (94)
T ss_pred CCeEEEccCCcccCeEEEEEEcCCCccE
Confidence 3567888999999999999999987754
No 136
>KOG1948|consensus
Probab=74.31 E-value=58 Score=28.30 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=20.8
Q ss_pred cccEEEECCCCCCCEEEEEEEEEc
Q psy9139 79 EYREFTLTQLKCGTHYKINIKLVN 102 (197)
Q Consensus 79 ~~~~~~i~~L~p~~~y~~~v~a~~ 102 (197)
.+..|+|++|.|+..|.+++.+..
T Consensus 944 enG~yRiRGL~Pdc~Y~V~vk~~~ 967 (1165)
T KOG1948|consen 944 ENGTYRIRGLLPDCEYQVHVKSYA 967 (1165)
T ss_pred cCCcEEEeccCCCceEEEEEeecc
Confidence 345799999999999999998884
No 137
>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]
Probab=74.24 E-value=35 Score=25.77 Aligned_cols=158 Identities=13% Similarity=0.066 Sum_probs=79.6
Q ss_pred EEEEEEeCCCCceeEEEEEecCC-CCCCE---EEEEeecCCeEEEEeeeCCCCCccccEEEEEEEeCCCCcEEEEeCCcc
Q psy9139 5 YTCLADNIFGKDDIYYQVTILSP-PGVPN---ILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDRTEDWQSVHVDAEY 80 (197)
Q Consensus 5 y~c~a~n~~G~~~~~~~~~~~~~-P~~p~---~~~~~~~~~~~~l~W~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~ 80 (197)
|.+.+.+..+.-+.++......+ -.|+. +.+.....+.+.|+|..+... ..|+|.-.+..............
T Consensus 139 ~~Iia~~f~~~~sfsf~gVE~~~~~~P~ei~~~~~~~d~~~~i~ls~dg~~~~----~yy~IY~~~~g~e~~~~ia~t~~ 214 (343)
T COG3401 139 ELIIAADFQMGKSFSFTGVEATPKAEPKEITNVRVSFDLGNNIELSEDGSEAE----DYYRIYASDSGNEEYGFIAQTTE 214 (343)
T ss_pred eeEEeecccccceeeeeeeecccccCCceeeeeeeecCCCCcceeeccCcccc----ceEEEeccCCccccccceeeccc
Confidence 45556665554444433222222 23343 444445678899999875422 26777765433322222223344
Q ss_pred cEEEECCCCCCCEEEEEEEEEcCCc-CCCCCCceEe-ecCCCC---------------CCCeeecCCC--CCc-------
Q psy9139 81 REFTLTQLKCGTHYKINIKLVNSIG-ESKPSKTIAA-STKGED---------------QTDWINIPLS--NLD------- 134 (197)
Q Consensus 81 ~~~~i~~L~p~~~y~~~v~a~~~~g-~~~~s~~~~~-~t~~~~---------------~~~w~~~~~~--~~~------- 134 (197)
+.+...--.-+..|.+.|.+....| .+.-+..... .+...+ .++|...... ...
T Consensus 215 n~y~d~~eglga~~~y~VTtVd~~~~es~lp~~~t~~~~~g~~e~pt~~g~t~~~s~i~V~~E~~~~~~av~ytvyr~~~ 294 (343)
T COG3401 215 NSYYDVKEGLGAVEYYKVTTVDNTGFESDLPNEPTVGETGGRYEVPTIPGETTEASFIGVAAEQNQLRQAVTYTVYRVED 294 (343)
T ss_pred cchhhhhhccCceeEEEEEEEcCCcceeccCCccccccccCCcccccCCCceeeeeeeeEEecccccceeeEEeeeeccC
Confidence 4544433444667777777765433 3333332211 111111 2334332110 000
Q ss_pred -------ccccceEEEcCCCCCCeEEEEEEEEcCCCCCC
Q psy9139 135 -------EALEMPLVIENLLPATRYELTISAKNDAGSTN 166 (197)
Q Consensus 135 -------~~~~~~~~i~~L~p~t~Y~v~V~a~n~~G~~~ 166 (197)
......+....+.++..|.+.|.+.+.+|.+.
T Consensus 295 g~~~~~f~it~~d~~d~~~ltg~~~~y~v~~v~~~gls~ 333 (343)
T COG3401 295 GTPTKFFTITETDGQDNDMLTGVEYRYEVVAVDKAGLSS 333 (343)
T ss_pred CCcceeeeeeeccccchhhccccceeEEEEEeccccccc
Confidence 00133455667888999999999999988766
No 138
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=74.16 E-value=14 Score=22.18 Aligned_cols=37 Identities=16% Similarity=0.109 Sum_probs=30.1
Q ss_pred cceEEEcCCCCCCeEEEEEEEEcCCCCCCcceEEEEe
Q psy9139 138 EMPLVIENLLPATRYELTISAKNDAGSTNKNYVFATL 174 (197)
Q Consensus 138 ~~~~~i~~L~p~t~Y~v~V~a~n~~G~~~~~~~~~t~ 174 (197)
.+.++|.++.....-.+.+.|.|..|....+..+...
T Consensus 55 ~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~ 91 (98)
T cd05762 55 SSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVV 91 (98)
T ss_pred eeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEEe
Confidence 4568899999988889999999999998876655443
No 139
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=74.03 E-value=14 Score=21.15 Aligned_cols=66 Identities=8% Similarity=0.037 Sum_probs=39.3
Q ss_pred cCCeEEEEeeeCCCCCccccEEEEEEEeCCCCcEEEEeCCcccEEEECCCCCCCEEEEEEEEEcCCcCCCC
Q psy9139 39 TTHSISILWKPSYDGGAIITHYIVSYRDRTEDWQSVHVDAEYREFTLTQLKCGTHYKINIKLVNSIGESKP 109 (197)
Q Consensus 39 ~~~~~~l~W~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~~~~g~~~~ 109 (197)
....++|.|..... .+ ...+.|......... ........+.|.++.+.....|.|.+.|..|....
T Consensus 15 ~G~~v~L~C~~~~~--~~--~~~i~W~~~~~~~~~-~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~ 80 (85)
T cd05754 15 PGADVSFICRAKSK--SP--AYTLVWTRVGGGLPS-RAMDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEA 80 (85)
T ss_pred CCCCEEEEEEcCCC--CC--CcEEEEEECCCcCCC-cccccCCEEEECCCCHHHCEEEEEEEeccCCeEeE
Confidence 45667888875321 11 134555432211000 11122457899999999999999999998876543
No 140
>KOG4367|consensus
Probab=73.71 E-value=0.99 Score=34.71 Aligned_cols=40 Identities=15% Similarity=0.190 Sum_probs=32.9
Q ss_pred cceEEEcCCCCCCeEEEEEEEEcCCCCCCcceEEEEeeeC
Q psy9139 138 EMPLVIENLLPATRYELTISAKNDAGSTNKNYVFATLSVN 177 (197)
Q Consensus 138 ~~~~~i~~L~p~t~Y~v~V~a~n~~G~~~~~~~~~t~~~~ 177 (197)
++-.++.||..++.|.-+|.|+|..|.++.+..+...+.+
T Consensus 492 etmctvdglhfns~y~arvka~n~tg~s~ys~tl~lqts~ 531 (699)
T KOG4367|consen 492 ETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSE 531 (699)
T ss_pred ceeEEecceecchhHHHHHHHhhccCCCcccceeEeeecc
Confidence 5678999999999999999999999999966555444433
No 141
>PF07353 Uroplakin_II: Uroplakin II; InterPro: IPR009952 This family contains uroplakin II, which is approximately 180 residues long and seems to be restricted to mammals. Uroplakin II is an integral membrane protein, and is one of the components of the apical plaques of mammalian urothelium formed by the asymmetric unit membrane - this is believed to play a role in strengthening the urothelial apical surface to prevent the cells from rupturing during bladder distension [].; GO: 0016044 cellular membrane organization, 0030176 integral to endoplasmic reticulum membrane
Probab=73.16 E-value=8.5 Score=25.48 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=20.6
Q ss_pred cceEEEcCCCCCCeEEEEEEEEcC
Q psy9139 138 EMPLVIENLLPATRYELTISAKND 161 (197)
Q Consensus 138 ~~~~~i~~L~p~t~Y~v~V~a~n~ 161 (197)
-..|.+.+|.||++|.|+-...++
T Consensus 101 lsaYqVtNL~pGTkY~isY~Vtkg 124 (184)
T PF07353_consen 101 LSAYQVTNLQPGTKYYISYLVTKG 124 (184)
T ss_pred ceeEEeeccCCCcEEEEEEEEecC
Confidence 457999999999999999887655
No 142
>PLN02533 probable purple acid phosphatase
Probab=72.50 E-value=7.8 Score=30.45 Aligned_cols=19 Identities=32% Similarity=0.331 Sum_probs=16.8
Q ss_pred ceEEEcCCCCCCeEEEEEE
Q psy9139 139 MPLVIENLLPATRYELTIS 157 (197)
Q Consensus 139 ~~~~i~~L~p~t~Y~v~V~ 157 (197)
....|++|+|+|.|.++|.
T Consensus 103 H~v~l~~L~p~T~Y~Yrvg 121 (427)
T PLN02533 103 NDVVIGPLKPNTVYYYKCG 121 (427)
T ss_pred EEEEeCCCCCCCEEEEEEC
Confidence 4578999999999999984
No 143
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=71.61 E-value=11 Score=21.84 Aligned_cols=35 Identities=20% Similarity=0.086 Sum_probs=28.2
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCCCCcceEEEE
Q psy9139 139 MPLVIENLLPATRYELTISAKNDAGSTNKNYVFAT 173 (197)
Q Consensus 139 ~~~~i~~L~p~t~Y~v~V~a~n~~G~~~~~~~~~t 173 (197)
..++|.++++...-.+++.|.|.+|....+..+..
T Consensus 47 ~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V 81 (85)
T cd05854 47 GDLVIVNAQLSHAGTYTCTAQTVVDSASASATLVV 81 (85)
T ss_pred eEEEEccCChhhCeEEEEEEecCCCCEEEEEEEEE
Confidence 36888999998899999999999997776555533
No 144
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=71.46 E-value=8.3 Score=21.75 Aligned_cols=32 Identities=31% Similarity=0.304 Sum_probs=26.0
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCCCCcceE
Q psy9139 139 MPLVIENLLPATRYELTISAKNDAGSTNKNYV 170 (197)
Q Consensus 139 ~~~~i~~L~p~t~Y~v~V~a~n~~G~~~~~~~ 170 (197)
..+.|.++++...-.+.+.|.|..|.......
T Consensus 47 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 78 (81)
T cd05765 47 GQLVIYNAQPQDAGLYTCTARNSGGLLRANFP 78 (81)
T ss_pred cEEEEccCCcccCEEEEEEEecCCceEEEEEE
Confidence 35788899998889999999999998655443
No 145
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=71.21 E-value=4.9 Score=31.75 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=15.0
Q ss_pred cceEEEcCCCCCCeEEEEEEE
Q psy9139 138 EMPLVIENLLPATRYELTISA 158 (197)
Q Consensus 138 ~~~~~i~~L~p~t~Y~v~V~a 158 (197)
...+.+++|+|++.|.+++.+
T Consensus 63 t~~v~v~gL~p~t~Y~Y~~~~ 83 (453)
T PF09423_consen 63 TVKVDVTGLQPGTRYYYRFVV 83 (453)
T ss_dssp EEEEEE-S--TT-EEEEEEEE
T ss_pred EeecccCCCCCCceEEEEEEE
Confidence 446889999999999999999
No 146
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=71.03 E-value=14 Score=21.74 Aligned_cols=32 Identities=22% Similarity=0.220 Sum_probs=25.5
Q ss_pred eEEEcCCCCCCeEEEEEEEEcCCCCCCcceEE
Q psy9139 140 PLVIENLLPATRYELTISAKNDAGSTNKNYVF 171 (197)
Q Consensus 140 ~~~i~~L~p~t~Y~v~V~a~n~~G~~~~~~~~ 171 (197)
.+.|.++.....-.+.+.|.|..|....+..+
T Consensus 59 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L 90 (95)
T cd05730 59 EMTILDVDKLDEAEYTCIAENKAGEQEAEIHL 90 (95)
T ss_pred EEEECCCChhhCEEEEEEEEcCCCeEEEEEEE
Confidence 47788888888889999999999987655444
No 147
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=71.01 E-value=11 Score=21.98 Aligned_cols=31 Identities=23% Similarity=0.237 Sum_probs=25.8
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCCCCcce
Q psy9139 139 MPLVIENLLPATRYELTISAKNDAGSTNKNY 169 (197)
Q Consensus 139 ~~~~i~~L~p~t~Y~v~V~a~n~~G~~~~~~ 169 (197)
..+.|.++.+.....+.+.|.|..|.-..+.
T Consensus 52 ~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~ 82 (86)
T cd05894 52 SSFVIEGAEREDEGVYTITVTNPVGEDHASL 82 (86)
T ss_pred EEEEECCCccCcCEEEEEEEEeCCCcEEEEE
Confidence 4688999999999999999999999755443
No 148
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=70.82 E-value=11 Score=21.92 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=26.5
Q ss_pred cceEEEcCCCCCCeEEEEEEEEcCCCCCCcceE
Q psy9139 138 EMPLVIENLLPATRYELTISAKNDAGSTNKNYV 170 (197)
Q Consensus 138 ~~~~~i~~L~p~t~Y~v~V~a~n~~G~~~~~~~ 170 (197)
...+.|.++.+.....+.+.|.|..|....+..
T Consensus 55 ~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~ 87 (90)
T cd04972 55 IYNLQLSNITSETQTTVTCTAENPVGQANVSVQ 87 (90)
T ss_pred EEEEEEecCCcccCEEEEEEEECCCCceeEEEE
Confidence 346888899998888999999999998665443
No 149
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=70.70 E-value=16 Score=20.21 Aligned_cols=26 Identities=12% Similarity=0.086 Sum_probs=21.6
Q ss_pred EEEECCCCCCCEEEEEEEEEcCCcCC
Q psy9139 82 EFTLTQLKCGTHYKINIKLVNSIGES 107 (197)
Q Consensus 82 ~~~i~~L~p~~~y~~~v~a~~~~g~~ 107 (197)
.+.|..+.......|.|.|.|..|..
T Consensus 41 ~L~i~~~~~~D~G~Y~C~a~N~~G~~ 66 (74)
T cd05764 41 TLDILITTVKDTGSFTCIASNAAGEA 66 (74)
T ss_pred EEEEEECChhhCEEEEEEEECCCCeE
Confidence 56777788888889999999998864
No 150
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=70.68 E-value=18 Score=20.94 Aligned_cols=25 Identities=4% Similarity=-0.161 Sum_probs=21.0
Q ss_pred cEEEECCCCCCCEEEEEEEEEcCCc
Q psy9139 81 REFTLTQLKCGTHYKINIKLVNSIG 105 (197)
Q Consensus 81 ~~~~i~~L~p~~~y~~~v~a~~~~g 105 (197)
..+.|.++.+.....|.|.+.+..+
T Consensus 51 ~~L~I~~~~~~D~G~Y~C~a~~~~~ 75 (89)
T cd04979 51 DGLLIRSVSPADAGVYTCQSVEHGF 75 (89)
T ss_pred CCEEEccCCHHHCEEEEEEEecCcc
Confidence 3478899999999999999987764
No 151
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=69.96 E-value=13 Score=19.02 Aligned_cols=27 Identities=15% Similarity=0.074 Sum_probs=20.7
Q ss_pred cccEEEECCCCCCCEEEEEEEEEcCCc
Q psy9139 79 EYREFTLTQLKCGTHYKINIKLVNSIG 105 (197)
Q Consensus 79 ~~~~~~i~~L~p~~~y~~~v~a~~~~g 105 (197)
....+.|.++.......|.|.+.|..|
T Consensus 37 ~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 37 SGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 345688888888888888998887654
No 152
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=69.74 E-value=21 Score=21.21 Aligned_cols=28 Identities=18% Similarity=0.226 Sum_probs=23.0
Q ss_pred cEEEECCCCCCC-EEEEEEEEEcCCcCCC
Q psy9139 81 REFTLTQLKCGT-HYKINIKLVNSIGESK 108 (197)
Q Consensus 81 ~~~~i~~L~p~~-~y~~~v~a~~~~g~~~ 108 (197)
..+.|.++.... ...|.|.|.|..|...
T Consensus 64 s~L~I~~v~~~d~~G~Y~C~A~N~~G~~~ 92 (98)
T cd05758 64 STLTISNTQESDFQTSYNCTAWNSFGSGT 92 (98)
T ss_pred EEEEECCccccccceeEEEEEEcCCCccc
Confidence 468899999844 7899999999998754
No 153
>KOG3515|consensus
Probab=69.06 E-value=73 Score=27.21 Aligned_cols=42 Identities=21% Similarity=0.232 Sum_probs=28.3
Q ss_pred CCeeEEEEEEeCCCCceeEEEEEecCCCCCCE--EEEEeecCCe
Q psy9139 1 MVGNYTCLADNIFGKDDIYYQVTILSPPGVPN--ILLQSTTTHS 42 (197)
Q Consensus 1 ~~g~y~c~a~n~~G~~~~~~~~~~~~~P~~p~--~~~~~~~~~~ 42 (197)
+.|.|.|.|.|..|.......+.+...|..-. ........++
T Consensus 469 d~g~y~~tatns~gg~~~~~~~~~~~sp~~~~~~~~~~~~~~ns 512 (741)
T KOG3515|consen 469 DGGSYGLTATNSPGGAQAYLLLGVHTSPHNHHLQDQVEGATGNS 512 (741)
T ss_pred cCCcceeeeccCCCceeeEEeeccccCCcccccccccccCCCCc
Confidence 56999999999999887777766665553332 3344444555
No 154
>PHA03042 CD47-like protein; Provisional
Probab=67.98 E-value=7 Score=28.37 Aligned_cols=22 Identities=41% Similarity=0.517 Sum_probs=16.2
Q ss_pred CeeEEEEEEeCCCCceeEEEEE
Q psy9139 2 VGNYTCLADNIFGKDDIYYQVT 23 (197)
Q Consensus 2 ~g~y~c~a~n~~G~~~~~~~~~ 23 (197)
.|+|||.|.+...+....+.+.
T Consensus 82 ~GNYTCEv~~l~n~gk~~IeLk 103 (286)
T PHA03042 82 SGNYTCEAINKFNKIKNTIELQ 103 (286)
T ss_pred CCceeEEEeecccCccEEEEEE
Confidence 6999999998766555555543
No 155
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=67.52 E-value=14 Score=20.91 Aligned_cols=27 Identities=11% Similarity=0.092 Sum_probs=23.9
Q ss_pred cEEEECCCCCCCEEEEEEEEEcCCcCC
Q psy9139 81 REFTLTQLKCGTHYKINIKLVNSIGES 107 (197)
Q Consensus 81 ~~~~i~~L~p~~~y~~~v~a~~~~g~~ 107 (197)
..+.|.++.+.....|.|.|.|..|..
T Consensus 44 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 70 (79)
T cd05734 44 GSLLIKHVLEEDSGYYLCKVSNDVGAD 70 (79)
T ss_pred CeEEECcCCcccCEEEEEEEEeCCCCC
Confidence 468899999999999999999999865
No 156
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=66.89 E-value=15 Score=21.13 Aligned_cols=29 Identities=14% Similarity=0.037 Sum_probs=24.5
Q ss_pred cEEEECCCCCCCEEEEEEEEEcCCcCCCC
Q psy9139 81 REFTLTQLKCGTHYKINIKLVNSIGESKP 109 (197)
Q Consensus 81 ~~~~i~~L~p~~~y~~~v~a~~~~g~~~~ 109 (197)
..+.|.+..+.....|.|.|.|..|....
T Consensus 44 ~~L~i~~~~~~D~G~YtC~A~N~~G~~~~ 72 (79)
T cd05855 44 GCLQLDNPTHLNNGIYTLVAKNEYGEDEK 72 (79)
T ss_pred EEEEECCCCcccCEEEEEEEEcCCcccce
Confidence 45788888999999999999999997543
No 157
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=66.70 E-value=11 Score=21.48 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=22.1
Q ss_pred cceEEEcCCCCCCeEEEEEEEE-cCCC
Q psy9139 138 EMPLVIENLLPATRYELTISAK-NDAG 163 (197)
Q Consensus 138 ~~~~~i~~L~p~t~Y~v~V~a~-n~~G 163 (197)
...|.-.+|++|..|.++|+|. +..|
T Consensus 28 ~R~F~T~~L~~G~~y~Y~v~a~~~~dG 54 (75)
T TIGR03000 28 VRTFTTPPLEAGKEYEYTVTAEYDRDG 54 (75)
T ss_pred EEEEECCCCCCCCEEEEEEEEEEecCC
Confidence 5679999999999999999994 5555
No 158
>PF07353 Uroplakin_II: Uroplakin II; InterPro: IPR009952 This family contains uroplakin II, which is approximately 180 residues long and seems to be restricted to mammals. Uroplakin II is an integral membrane protein, and is one of the components of the apical plaques of mammalian urothelium formed by the asymmetric unit membrane - this is believed to play a role in strengthening the urothelial apical surface to prevent the cells from rupturing during bladder distension [].; GO: 0016044 cellular membrane organization, 0030176 integral to endoplasmic reticulum membrane
Probab=66.18 E-value=16 Score=24.30 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=19.4
Q ss_pred cEEEECCCCCCCEEEEEEEEEcC
Q psy9139 81 REFTLTQLKCGTHYKINIKLVNS 103 (197)
Q Consensus 81 ~~~~i~~L~p~~~y~~~v~a~~~ 103 (197)
..|.+.+|.||+.|.++-...+.
T Consensus 102 saYqVtNL~pGTkY~isY~Vtkg 124 (184)
T PF07353_consen 102 SAYQVTNLQPGTKYYISYLVTKG 124 (184)
T ss_pred eeEEeeccCCCcEEEEEEEEecC
Confidence 45899999999999999777654
No 159
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=64.98 E-value=11 Score=25.01 Aligned_cols=29 Identities=34% Similarity=0.544 Sum_probs=23.7
Q ss_pred EcCCCCCCeEEEEEEEEcCCCCCC-cceEE
Q psy9139 143 IENLLPATRYELTISAKNDAGSTN-KNYVF 171 (197)
Q Consensus 143 i~~L~p~t~Y~v~V~a~n~~G~~~-~~~~~ 171 (197)
+..|+++..|.+.|.|.+.+|... .+..|
T Consensus 116 fpsle~~~~YtLtV~a~D~aGN~~~~si~F 145 (158)
T PF13750_consen 116 FPSLEADDSYTLTVSATDKAGNQSTKSISF 145 (158)
T ss_pred cCCcCCCCeEEEEEEEEecCCCEEEEEEEE
Confidence 467899999999999999999865 44444
No 160
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=64.46 E-value=20 Score=21.33 Aligned_cols=31 Identities=16% Similarity=0.167 Sum_probs=25.5
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCCCCcce
Q psy9139 139 MPLVIENLLPATRYELTISAKNDAGSTNKNY 169 (197)
Q Consensus 139 ~~~~i~~L~p~t~Y~v~V~a~n~~G~~~~~~ 169 (197)
..+.|.++.+...=.+.+.|.|..|....+.
T Consensus 64 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~ 94 (98)
T cd05870 64 SSLHIKDVKLSDSGRYDCEAASRIGGHQKSM 94 (98)
T ss_pred eEEEEeeCCcCCCEEEEEEEeccCCcceeEE
Confidence 3578888888888899999999999866543
No 161
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=64.38 E-value=16 Score=21.33 Aligned_cols=33 Identities=21% Similarity=0.124 Sum_probs=27.2
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCCCCcceEE
Q psy9139 139 MPLVIENLLPATRYELTISAKNDAGSTNKNYVF 171 (197)
Q Consensus 139 ~~~~i~~L~p~t~Y~v~V~a~n~~G~~~~~~~~ 171 (197)
..+.|.+++....-.+++.|.|..|....+..+
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L 87 (90)
T cd05858 55 EVLYLRNVTFEDAGEYTCLAGNSIGISHHSAWL 87 (90)
T ss_pred eEEEEccCCHHHCEEEEEEEEeCCCcccceEEE
Confidence 468899999988899999999999987655443
No 162
>KOG4806|consensus
Probab=64.17 E-value=21 Score=27.16 Aligned_cols=36 Identities=22% Similarity=0.356 Sum_probs=27.2
Q ss_pred EEEECCCCCCCEEEEEEEEEcCCcCCCCCCceEeec
Q psy9139 82 EFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAAST 117 (197)
Q Consensus 82 ~~~i~~L~p~~~y~~~v~a~~~~g~~~~s~~~~~~t 117 (197)
.-+|.+|.|+..|..-|.|-...|..-+-..+.+.+
T Consensus 411 teTI~gL~PgssYlldv~a~~~~g~~lpyqa~~v~t 446 (454)
T KOG4806|consen 411 TETILGLMPGSSYLLDVTANLSMGKPLPYQALTVHT 446 (454)
T ss_pred hhhhcccccCceEEEEEEEcccCCccccceeEEEEe
Confidence 457889999999999999988877665544444443
No 163
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=63.14 E-value=21 Score=18.78 Aligned_cols=30 Identities=23% Similarity=0.485 Sum_probs=23.0
Q ss_pred cceEEEcCCCCCCeEEEEEEEEcCCCCCCcc
Q psy9139 138 EMPLVIENLLPATRYELTISAKNDAGSTNKN 168 (197)
Q Consensus 138 ~~~~~i~~L~p~t~Y~v~V~a~n~~G~~~~~ 168 (197)
.-.+.+..+ ..-.|.|.+.|.+.+|.....
T Consensus 13 ~Ws~t~~~~-~dG~y~itv~a~D~AGN~s~~ 42 (54)
T PF13754_consen 13 NWSFTVPAL-ADGTYTITVTATDAAGNTSTS 42 (54)
T ss_pred cEEEeCCCC-CCccEEEEEEEEeCCCCCCCc
Confidence 335666666 677999999999999987643
No 164
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=62.49 E-value=30 Score=20.41 Aligned_cols=27 Identities=7% Similarity=0.084 Sum_probs=20.4
Q ss_pred cEEEECCCC-CCCEEEEEEEEEcCCcCC
Q psy9139 81 REFTLTQLK-CGTHYKINIKLVNSIGES 107 (197)
Q Consensus 81 ~~~~i~~L~-p~~~y~~~v~a~~~~g~~ 107 (197)
..+.|.++. ......|+|.|.|..|..
T Consensus 58 g~L~I~~~~~~~D~G~Y~C~A~N~~G~~ 85 (94)
T cd05850 58 GNLVINNPQKARDAGSYQCLAINRCGTV 85 (94)
T ss_pred CeEEEccCCccCcCEEEEEEEEcCcCcE
Confidence 356676644 577889999999999854
No 165
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=61.57 E-value=21 Score=21.33 Aligned_cols=33 Identities=15% Similarity=0.042 Sum_probs=25.9
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCC-CCCCcceEE
Q psy9139 139 MPLVIENLLPATRYELTISAKNDA-GSTNKNYVF 171 (197)
Q Consensus 139 ~~~~i~~L~p~t~Y~v~V~a~n~~-G~~~~~~~~ 171 (197)
..+.|.++++...-.+++.|.|.+ |....+..+
T Consensus 60 ~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~~l 93 (96)
T cd05865 60 STLTIYNANIDDAGIYKCVVSNEDEGESEATVNV 93 (96)
T ss_pred eEEEEeccChhhCEEEEEEEEcCCCCcEEEEEEE
Confidence 357888999988889999999997 666555544
No 166
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=59.34 E-value=28 Score=20.33 Aligned_cols=31 Identities=13% Similarity=0.192 Sum_probs=25.1
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCCCCcce
Q psy9139 139 MPLVIENLLPATRYELTISAKNDAGSTNKNY 169 (197)
Q Consensus 139 ~~~~i~~L~p~t~Y~v~V~a~n~~G~~~~~~ 169 (197)
..+.|.++.....-.+.+.|.|..|....+.
T Consensus 62 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~ 92 (96)
T cd05732 62 SSLTLKDVQLTDAGRYDCEASNRIGGDQQSM 92 (96)
T ss_pred EEEEECcCCcCcCEEeEEEEEeCCCCcEEEE
Confidence 3578888888888899999999999876543
No 167
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=59.32 E-value=29 Score=19.27 Aligned_cols=30 Identities=7% Similarity=0.192 Sum_probs=25.2
Q ss_pred cccEEEECCCCCCCEEEEEEEEEcCCcCCC
Q psy9139 79 EYREFTLTQLKCGTHYKINIKLVNSIGESK 108 (197)
Q Consensus 79 ~~~~~~i~~L~p~~~y~~~v~a~~~~g~~~ 108 (197)
....+.|.++.+.....|.|.+.|..|...
T Consensus 42 ~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~ 71 (76)
T cd05895 42 KSSELQISKASLADNGEYKCMVSSKLGNDS 71 (76)
T ss_pred cEEEEEECcCCcccCEEEEEEEEeCCCcee
Confidence 345688999999999999999999988643
No 168
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=59.11 E-value=13 Score=22.43 Aligned_cols=20 Identities=35% Similarity=0.464 Sum_probs=12.8
Q ss_pred cceEEEcCCCCCCeEEEEEEE
Q psy9139 138 EMPLVIENLLPATRYELTISA 158 (197)
Q Consensus 138 ~~~~~i~~L~p~t~Y~v~V~a 158 (197)
.-.|+|.+++||+ |.+.+.+
T Consensus 49 ~G~Fti~~V~pGt-Y~L~ay~ 68 (95)
T PF14686_consen 49 DGNFTIPNVRPGT-YRLYAYA 68 (95)
T ss_dssp TSEEE---B-SEE-EEEEEEE
T ss_pred CCcEEeCCeeCcE-eEEEEEE
Confidence 4479999999996 8887777
No 169
>PF04775 Bile_Hydr_Trans: Acyl-CoA thioester hydrolase/BAAT N-terminal region; InterPro: IPR006862 This entry presents the N-termini of acyl-CoA thioester hydrolase and bile acid-CoA:amino acid N-acetyltransferase (BAAT) []. This region is not thought to contain the active site of either enzyme. Thioesterase isoforms have been identified in peroxisomes, cytoplasm and mitochondria, where they are thought to have distinct functions in lipid metabolism []. For example, in peroxisomes, the hydrolase acts on bile-CoA esters [].; GO: 0016290 palmitoyl-CoA hydrolase activity, 0006629 lipid metabolic process; PDB: 3HLK_B 3K2I_B.
Probab=58.96 E-value=20 Score=22.82 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=17.0
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCC
Q psy9139 139 MPLVIENLLPATRYELTISAKNDAG 163 (197)
Q Consensus 139 ~~~~i~~L~p~t~Y~v~V~a~n~~G 163 (197)
-...++||.|+..|.++....+..|
T Consensus 5 ~~I~v~GL~p~~~vtl~a~~~~~~g 29 (126)
T PF04775_consen 5 VDIRVSGLPPGQEVTLRARLTDDNG 29 (126)
T ss_dssp -EEEEES--TT-EEEEEEEEE-TTS
T ss_pred eEEEEeCCCCCCEEEEEEEEEeCCC
Confidence 3678999999999999999887544
No 170
>KOG4806|consensus
Probab=58.90 E-value=13 Score=28.20 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=22.3
Q ss_pred cceEEEcCCCCCCeEEEEEEEEcCC
Q psy9139 138 EMPLVIENLLPATRYELTISAKNDA 162 (197)
Q Consensus 138 ~~~~~i~~L~p~t~Y~v~V~a~n~~ 162 (197)
.+.+++.+|.|.+.|.|.|...|..
T Consensus 169 ~n~~~v~~L~pdt~Y~~dvFvv~~~ 193 (454)
T KOG4806|consen 169 KNIFTVSDLKPDTQYYFDVFVVNIN 193 (454)
T ss_pred ccEEEhhhcCCCceEEEEEEEEecC
Confidence 5589999999999999999999764
No 171
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=57.32 E-value=38 Score=19.94 Aligned_cols=24 Identities=17% Similarity=0.081 Sum_probs=20.2
Q ss_pred cEEEECCCCCCCEEEEEEEEEcCC
Q psy9139 81 REFTLTQLKCGTHYKINIKLVNSI 104 (197)
Q Consensus 81 ~~~~i~~L~p~~~y~~~v~a~~~~ 104 (197)
..+.|.++++.....|.|.+.+..
T Consensus 53 ~~L~I~~~~~~DsG~Y~C~a~~~~ 76 (91)
T cd05871 53 RGLLLRSLQRSDAGVYTCTAVEHS 76 (91)
T ss_pred CeEEEeeCChhHCEEEEEEEEccC
Confidence 458899999999999999998543
No 172
>PF08329 ChitinaseA_N: Chitinase A, N-terminal domain; InterPro: IPR013540 This domain is found in a number of bacterial chitinases and similar viral proteins. It is organised into a fibronectin III module domain-like fold, comprising only beta strands. Its function is not known, but it may be involved in interaction with the enzyme substrate, chitin [, ]. It is separated by a hinge region from the catalytic domain (IPR001223 from INTERPRO); this hinge region is probably mobile, allowing the N-terminal domain to have different relative positions in solution []. ; GO: 0004568 chitinase activity; PDB: 2WLY_A 1EDQ_A 2WM0_A 1X6N_A 1NH6_A 2WK2_A 1EHN_A 2WLZ_A 1EIB_A 1FFR_A ....
Probab=57.22 E-value=13 Score=24.00 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=18.7
Q ss_pred CCCCeEEEEEEEEcCCCCCCcceEEEEee
Q psy9139 147 LPATRYELTISAKNDAGSTNKNYVFATLS 175 (197)
Q Consensus 147 ~p~t~Y~v~V~a~n~~G~~~~~~~~~t~~ 175 (197)
..+..|.++|..+|..|.+.+.....+..
T Consensus 80 ~~gG~y~~~VeLCN~~GCS~S~~~~V~Va 108 (133)
T PF08329_consen 80 TKGGRYQMQVELCNADGCSTSAPVEVVVA 108 (133)
T ss_dssp -S-EEEEEEEEEEETTEEEE---EEEEEE
T ss_pred cCCCEEEEEEEEECCCCcccCCCEEEEEe
Confidence 56679999999999999877544333333
No 173
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=56.63 E-value=32 Score=20.31 Aligned_cols=31 Identities=16% Similarity=0.193 Sum_probs=24.9
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCCCCcce
Q psy9139 139 MPLVIENLLPATRYELTISAKNDAGSTNKNY 169 (197)
Q Consensus 139 ~~~~i~~L~p~t~Y~v~V~a~n~~G~~~~~~ 169 (197)
..+.|.++.....-.+.+.|.|..|....+.
T Consensus 63 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~ 93 (97)
T cd05869 63 SSLTLKYIQYTDAGEYLCTASNTIGQDSQSM 93 (97)
T ss_pred EEEEEecCccCcCEEEEEEEecCCCCeeEEE
Confidence 3577888888777899999999999876543
No 174
>PF09240 IL6Ra-bind: Interleukin-6 receptor alpha chain, binding; InterPro: IPR015321 Members of this entry adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology. They are required for binding to the cytokine Interleukin-6 []. ; PDB: 1N26_A 1P9M_C 3LB6_C 1PVH_A 3L5H_A 1BQU_A 1I1R_A 3QT2_B 3BPN_C 3BPO_C ....
Probab=56.53 E-value=41 Score=20.13 Aligned_cols=76 Identities=12% Similarity=0.150 Sum_probs=48.3
Q ss_pred EEEEeecCCeEEEEeeeCCCCCccccEEEEEEEeCCCC-cEEEE---eC-CcccEEEECCCCC----CCEEEEEEEEEcC
Q psy9139 33 ILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDRTED-WQSVH---VD-AEYREFTLTQLKC----GTHYKINIKLVNS 103 (197)
Q Consensus 33 ~~~~~~~~~~~~l~W~~~~~~~~~i~~y~v~~~~~~~~-~~~~~---~~-~~~~~~~i~~L~p----~~~y~~~v~a~~~ 103 (197)
+.+.-.....+..+|.+...... -+.|.+.++..... -.+.. .. +....+.+..... ...|.+.|.+.+.
T Consensus 5 lsC~~~~~~~m~CtW~~g~~~~~-~t~y~L~~~~~~~~~~~eC~~y~~~~~~~~gC~~~~~~~~~~~~~~~~v~V~~ss~ 83 (99)
T PF09240_consen 5 LSCFIYNLEYMNCTWEPGKEAPP-DTQYTLYYWYSPLEEEKECPHYSKDSGTRIGCQFPVSEIDSSEFSQYNVCVNGSSS 83 (99)
T ss_dssp EEEEEETTTEEEEEEECCTTCST-TEEEEEEEEETTSSSEEEESEEEESTSSEEEEEEESCTT-TTTTSEEEEEEEEEET
T ss_pred CEEEEECCEEEEEEECCCCCCCC-cccEEEEEEcCCCCccccCCCccccCCceeEEEecCCCccccccceEEEEEEeccC
Confidence 66666678899999998764433 35688888854322 22221 12 2345566655544 3589999999988
Q ss_pred CcCCCC
Q psy9139 104 IGESKP 109 (197)
Q Consensus 104 ~g~~~~ 109 (197)
.|.-.+
T Consensus 84 ~~~i~~ 89 (99)
T PF09240_consen 84 AGSIRS 89 (99)
T ss_dssp TEEEEC
T ss_pred CCccCC
Confidence 876543
No 175
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=56.52 E-value=14 Score=28.93 Aligned_cols=27 Identities=22% Similarity=0.534 Sum_probs=0.0
Q ss_pred CCCCCCeEEEEEEEEcCCCCC-CcceEE
Q psy9139 145 NLLPATRYELTISAKNDAGST-NKNYVF 171 (197)
Q Consensus 145 ~L~p~t~Y~v~V~a~n~~G~~-~~~~~~ 171 (197)
-|++|..|.|++.+.+..+.. ..+..+
T Consensus 268 ~l~~g~~Y~~~l~v~~~~~~~~~a~~~~ 295 (440)
T PF02010_consen 268 VLEPGSTYTFRLTVTDSSGSSGSASISF 295 (440)
T ss_dssp ----------------------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 589999999999999887664 344444
No 176
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=56.23 E-value=15 Score=20.58 Aligned_cols=10 Identities=30% Similarity=0.840 Sum_probs=8.7
Q ss_pred CeeEEEEEEe
Q psy9139 2 VGNYTCLADN 11 (197)
Q Consensus 2 ~g~y~c~a~n 11 (197)
.|.|.|.+.+
T Consensus 45 RG~Y~C~~s~ 54 (69)
T cd07691 45 RGTYSCKESE 54 (69)
T ss_pred CcceEecCcc
Confidence 6999998877
No 177
>PF00907 T-box: T-box; InterPro: IPR001699 Transcription factors of the T-box family are required both for early cell-fate decisions, such as those necessary for formation of the basic vertebrate body plan, and for differentiation and organogenesis []. The T-box is defined as the minimal region within the T-box protein that is both necessary and sufficient for sequence-specific DNA binding, all members of the family so far examined bind to the DNA consensus sequence TCACACCT. The T-box is a relatively large DNA-binding domain, generally comprising about a third of the entire protein (17-26 kDa). These genes were uncovered on the basis of similarity to the DNA binding domain [] of Mus musculus (Mouse) Brachyury (T) gene product, which similarity is the defining feature of the family. The Brachyury gene is named for its phenotype, which was identified 70 years ago as a mutant mouse strain with a short blunted tail. The gene, and its paralogues, have become a well-studied model for the family, and hence much of what is known about the T-box family is derived from the murine Brachyury gene. Consistent with its nuclear location, Brachyury protein has a sequence-specific DNA-binding activity and can act as a transcriptional regulator []. Homozygous mutants for the gene undergo extensive developmental anomalies, thus rendering the mutation lethal []. The postulated role of Brachyury is as a transcription factor, regulating the specification and differentiation of posterior mesoderm during gastrulation in a dose-dependent manner []. T-box proteins tend to be expressed in specific organs or cell types, especially during development, and they are generally required for the development of those tissues, for example, Brachyury is expressed in posterior mesoderm and in the developing notochord, and it is required for the formation of these cells in mice []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1H6F_B 4A04_A 1XBR_B 2X6V_B 2X6U_A.
Probab=56.03 E-value=16 Score=24.92 Aligned_cols=23 Identities=13% Similarity=0.372 Sum_probs=18.7
Q ss_pred cceEEEcCCCCCCeEEEEEEEEc
Q psy9139 138 EMPLVIENLLPATRYELTISAKN 160 (197)
Q Consensus 138 ~~~~~i~~L~p~t~Y~v~V~a~n 160 (197)
...|.|+||.|...|.+.+...-
T Consensus 32 ~l~y~vsGL~p~~~Y~i~l~~~~ 54 (184)
T PF00907_consen 32 TLEYSVSGLDPDSLYSISLHFER 54 (184)
T ss_dssp -EEEEEESS-TTSEEEEEEEEEE
T ss_pred ccEEEecCCCCCcceEEEEEEEE
Confidence 56799999999999999988763
No 178
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=55.75 E-value=71 Score=27.89 Aligned_cols=73 Identities=15% Similarity=0.311 Sum_probs=42.0
Q ss_pred EEEEeecCCeEEEEeeeCCC--CCccccEEEEEEEeC----CCCcEE---EE----eC---CcccEEEE--CC--CCCCC
Q psy9139 33 ILLQSTTTHSISILWKPSYD--GGAIITHYIVSYRDR----TEDWQS---VH----VD---AEYREFTL--TQ--LKCGT 92 (197)
Q Consensus 33 ~~~~~~~~~~~~l~W~~~~~--~~~~i~~y~v~~~~~----~~~~~~---~~----~~---~~~~~~~i--~~--L~p~~ 92 (197)
+++ ......+.|+|..|-+ ..+....|.|++... ...+.. +. .+ +....+++ .+ .+.++
T Consensus 762 L~~-~~~~~~v~LsWTAPG~d~D~G~a~~y~ir~s~~~~~l~~~f~~a~~vn~~~~~P~~ags~e~~~f~~~~~~~~~~~ 840 (863)
T TIGR00868 762 LEA-GFQGDNIILTWTAPGDVLDHGRADRYIIRISTSILDLRDDFNDATQVNTTDLIPKEANSKEVFVFKPEGIPIENGT 840 (863)
T ss_pred eEE-eecCCEEEEEeeCCCccCCCCccceEEEEecCCHHHHHhhhccccccccCCcCCCCCCceeEEEEeCCcccccCCe
Confidence 444 3556679999999853 345578899988621 011110 10 01 11222333 33 23577
Q ss_pred EEEEEEEEEcCCcC
Q psy9139 93 HYKINIKLVNSIGE 106 (197)
Q Consensus 93 ~y~~~v~a~~~~g~ 106 (197)
.|.|-+++.+..|.
T Consensus 841 ~~~~ai~a~d~~~~ 854 (863)
T TIGR00868 841 DLFIAVQAIDKANL 854 (863)
T ss_pred EEEEEEEEEccccc
Confidence 89999999988875
No 179
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=55.22 E-value=20 Score=28.40 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=14.6
Q ss_pred ccEEEECCCCCCCEEEEEEEEE
Q psy9139 80 YREFTLTQLKCGTHYKINIKLV 101 (197)
Q Consensus 80 ~~~~~i~~L~p~~~y~~~v~a~ 101 (197)
...+.+++|+|++.|.|++...
T Consensus 63 t~~v~v~gL~p~t~Y~Y~~~~~ 84 (453)
T PF09423_consen 63 TVKVDVTGLQPGTRYYYRFVVD 84 (453)
T ss_dssp EEEEEE-S--TT-EEEEEEEE-
T ss_pred EeecccCCCCCCceEEEEEEEe
Confidence 3457899999999999999983
No 180
>PHA02579 7 baseplate wedge subunit; Provisional
Probab=54.80 E-value=80 Score=27.08 Aligned_cols=68 Identities=19% Similarity=0.353 Sum_probs=45.0
Q ss_pred EEEEEeecCCeEEEEeeeCCCCCccccEEEEEEE---eCCCC--------cEEEEeCCcccEEEECCCCCCCEEEEEEEE
Q psy9139 32 NILLQSTTTHSISILWKPSYDGGAIITHYIVSYR---DRTED--------WQSVHVDAEYREFTLTQLKCGTHYKINIKL 100 (197)
Q Consensus 32 ~~~~~~~~~~~~~l~W~~~~~~~~~i~~y~v~~~---~~~~~--------~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a 100 (197)
.+++...+.+.+.|.|... +.. ..|.|+.. ...+. |...-.......+.-. ++|.+.|.+||+.
T Consensus 10 slrI~kLsaN~v~l~WddV---G~N-FyY~Ve~a~t~~~~g~~ip~~~~~w~nlg~T~~~~wFed~-~~p~t~Yk~Rv~~ 84 (1030)
T PHA02579 10 SLRIDKLSANQVYLTWDDV---GAN-FYYFVELAETRDADGELIPDDELRWINLGYTANNEWFEDK-LQPNTYYKFRVAV 84 (1030)
T ss_pred EEEhhhhccceEEEEeecc---CCc-eEEEEEEEeeccCCCccCCCccccceecCcccchhhhhhc-cCCcceEEEEEEe
Confidence 3788888999999999853 222 56788776 22222 5543344444445444 9999999999987
Q ss_pred EcCC
Q psy9139 101 VNSI 104 (197)
Q Consensus 101 ~~~~ 104 (197)
....
T Consensus 85 ~~qG 88 (1030)
T PHA02579 85 AAQG 88 (1030)
T ss_pred eccC
Confidence 6443
No 181
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=54.12 E-value=42 Score=19.44 Aligned_cols=31 Identities=10% Similarity=-0.011 Sum_probs=24.8
Q ss_pred ccEEEECCCCCCCEEEEEEEEEcCCcCCCCC
Q psy9139 80 YREFTLTQLKCGTHYKINIKLVNSIGESKPS 110 (197)
Q Consensus 80 ~~~~~i~~L~p~~~y~~~v~a~~~~g~~~~s 110 (197)
...+.|.++.......|.|.|.|..|....+
T Consensus 49 ~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~ 79 (86)
T cd05862 49 SSTLTIENVTLSDLGRYTCTASSGQMIAKNS 79 (86)
T ss_pred eeEEEEecCCcccCEEEEEEEeecceEeccc
Confidence 4568889999999999999999987754443
No 182
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=47.24 E-value=60 Score=19.24 Aligned_cols=26 Identities=4% Similarity=0.022 Sum_probs=21.1
Q ss_pred cccEEEECCCCCCCEEEEEEEEEcCC
Q psy9139 79 EYREFTLTQLKCGTHYKINIKLVNSI 104 (197)
Q Consensus 79 ~~~~~~i~~L~p~~~y~~~v~a~~~~ 104 (197)
....+.|.++++.....|.|.+.+..
T Consensus 60 ~~~sL~I~~v~~~DsG~Y~C~~~t~~ 85 (95)
T cd07701 60 HELSISISDVSLSDEGQYTCSLFTMP 85 (95)
T ss_pred CcEEEEECcCCcccCEEEEEEeEeec
Confidence 34568899999999999999888743
No 183
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=47.00 E-value=59 Score=19.15 Aligned_cols=27 Identities=7% Similarity=0.042 Sum_probs=21.4
Q ss_pred cEEEECCCC-CCCEEEEEEEEEcCCcCC
Q psy9139 81 REFTLTQLK-CGTHYKINIKLVNSIGES 107 (197)
Q Consensus 81 ~~~~i~~L~-p~~~y~~~v~a~~~~g~~ 107 (197)
..+.|.++. ......|.|.|.|..|..
T Consensus 57 g~L~I~~~~~~~D~G~Y~C~A~N~~G~~ 84 (93)
T cd05849 57 GNLVINNPDKYKDAGRYVCIVSNIYGKV 84 (93)
T ss_pred CEEEECcCCcCCCCEEEEEEEEeCcceE
Confidence 467787774 578889999999999864
No 184
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=46.98 E-value=52 Score=18.51 Aligned_cols=27 Identities=7% Similarity=-0.055 Sum_probs=23.2
Q ss_pred cEEEECCCCCCCEEEEEEEEEcCCcCC
Q psy9139 81 REFTLTQLKCGTHYKINIKLVNSIGES 107 (197)
Q Consensus 81 ~~~~i~~L~p~~~y~~~v~a~~~~g~~ 107 (197)
..+.|.++.+.....|.|.|.|..|..
T Consensus 45 ~~L~I~~~~~~DsG~Y~C~a~n~~g~~ 71 (79)
T cd04973 45 EEVQIKDAVPRDSGLYACVTSSPSGSD 71 (79)
T ss_pred CEEEECCCChhhCEEEEEEEeCCCCcc
Confidence 468999999999999999999987653
No 185
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=45.20 E-value=68 Score=19.35 Aligned_cols=31 Identities=16% Similarity=0.198 Sum_probs=23.6
Q ss_pred CcccEEEECCCCCCC-EEEEEEEEEcCCcCCC
Q psy9139 78 AEYREFTLTQLKCGT-HYKINIKLVNSIGESK 108 (197)
Q Consensus 78 ~~~~~~~i~~L~p~~-~y~~~v~a~~~~g~~~ 108 (197)
...+.+.|.++.... ...|.|.|.|..|...
T Consensus 61 g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~ 92 (98)
T cd05898 61 GVLSTLTINNIMEADFQTHYNCTAWNSFGSGT 92 (98)
T ss_pred CcEEEEEECCCccccCCcEEEEEEEeCCccce
Confidence 356678999987654 4588899999988653
No 186
>cd02848 Chitinase_N_term Chitinase N-terminus domain. Chitinases hydrolyze the abundant natural biopolymer chitin, producing smaller chito-oligosaccharides. Chitin consists of multiple N-acetyl-D-glucosamine (NAG) residues connected via beta-1,4-glycosidic linkages and is an important structural element of fungal cell wall and arthropod exoskeletons. On the basis of the mode of chitin hydrolysis, chitinases are classified as random, endo-, and exo-chitinases and based on sequence criteria, chitinases belong to families 18 and 19 of glycosyl hydrolases. The N-terminus of chitinase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitob
Probab=43.52 E-value=77 Score=19.60 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=19.0
Q ss_pred CCCCCeEEEEEEEEcCCCCCCcc
Q psy9139 146 LLPATRYELTISAKNDAGSTNKN 168 (197)
Q Consensus 146 L~p~t~Y~v~V~a~n~~G~~~~~ 168 (197)
...|-.|..+|.++|..|.+.+.
T Consensus 76 v~kgG~y~m~V~lCn~dGCS~S~ 98 (106)
T cd02848 76 VGKGGRYQMQVALCNGDGCSTSA 98 (106)
T ss_pred eCCCCeEEEEEEEECCCCccCcC
Confidence 36677999999999999987653
No 187
>PF14250 AbrB-like: AbrB-like transcriptional regulator
Probab=42.66 E-value=26 Score=19.66 Aligned_cols=14 Identities=21% Similarity=0.508 Sum_probs=11.9
Q ss_pred EcCCCCCCeEEEEE
Q psy9139 143 IENLLPATRYELTI 156 (197)
Q Consensus 143 i~~L~p~t~Y~v~V 156 (197)
-.+|+||..|+|++
T Consensus 50 ~m~L~PGdEFeI~L 63 (71)
T PF14250_consen 50 QMGLKPGDEFEIKL 63 (71)
T ss_pred HhCCCCCCEEEEEe
Confidence 45899999999986
No 188
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=42.47 E-value=76 Score=19.11 Aligned_cols=65 Identities=3% Similarity=-0.029 Sum_probs=33.9
Q ss_pred ecCCeEEEEeeeCCCCCccccEEEEEEEeCCCC-----cEEEEeCCcccEEEECCCCCCCEEEEEEEEEcCCcC
Q psy9139 38 TTTHSISILWKPSYDGGAIITHYIVSYRDRTED-----WQSVHVDAEYREFTLTQLKCGTHYKINIKLVNSIGE 106 (197)
Q Consensus 38 ~~~~~~~l~W~~~~~~~~~i~~y~v~~~~~~~~-----~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~~~~g~ 106 (197)
.....+.|.|.+|..-..+ .+.|...... -....+......+-+.++.......|.|.|.|....
T Consensus 16 ~eG~~~~L~C~pP~g~P~p----~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~ 85 (96)
T cd05727 16 KEGWGVVLFCDPPPHYPDL----SYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSST 85 (96)
T ss_pred eeCCcEEEeeCCCCCCCCC----EEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccC
Confidence 4467889999887622222 2334321110 001112222334556666666666888888887654
No 189
>PF10333 Pga1: GPI-Mannosyltransferase II co-activator; InterPro: IPR019433 Pga1 is found only in yeasts and not in mammals. It localises in the ER as a glycosylated integral membrane protein. It binds to the GPI-mannosyltransferase II subunit of the GPI and it is responsible for the second mannose addition to GPI precursors. The GPI-anchoring complex is a glycolipid that functions as a membrane anchor for many cell-surface proteins [].
Probab=41.12 E-value=41 Score=23.01 Aligned_cols=20 Identities=25% Similarity=0.489 Sum_probs=17.4
Q ss_pred cceEEEcCCCCCCeEEEEEE
Q psy9139 138 EMPLVIENLLPATRYELTIS 157 (197)
Q Consensus 138 ~~~~~i~~L~p~t~Y~v~V~ 157 (197)
.....+.+|++|..|++++.
T Consensus 65 t~~V~L~nl~~~e~y~vKiC 84 (180)
T PF10333_consen 65 TTYVELNNLQPGETYQVKIC 84 (180)
T ss_pred eEEEEeccCCCCCeEEEEEE
Confidence 55788999999999999975
No 190
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=40.62 E-value=80 Score=18.83 Aligned_cols=27 Identities=7% Similarity=-0.036 Sum_probs=21.7
Q ss_pred cccEEEECCCCCCCEEEEEEEEEcCCc
Q psy9139 79 EYREFTLTQLKCGTHYKINIKLVNSIG 105 (197)
Q Consensus 79 ~~~~~~i~~L~p~~~y~~~v~a~~~~g 105 (197)
....++|.+|+......|.|.+.|..+
T Consensus 63 g~~~L~I~~l~~sDsgtY~C~v~~~~~ 89 (94)
T cd07690 63 GSFPLIIKNLKIEDSDTYICEVEDKKE 89 (94)
T ss_pred CeEEEEECCCCHHHCEEEEEEECCccc
Confidence 345699999999999999988877654
No 191
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=40.52 E-value=74 Score=18.41 Aligned_cols=26 Identities=8% Similarity=0.107 Sum_probs=19.7
Q ss_pred cEEEECCCC-CCCEEEEEEEEEcCCcC
Q psy9139 81 REFTLTQLK-CGTHYKINIKLVNSIGE 106 (197)
Q Consensus 81 ~~~~i~~L~-p~~~y~~~v~a~~~~g~ 106 (197)
..+.|.++. ......|+|.|.|..|.
T Consensus 58 ~~L~i~~~~~~~d~G~Y~C~a~N~~G~ 84 (91)
T cd04967 58 GNLVISNPSKAKDAGRYQCLASNIVGT 84 (91)
T ss_pred CEEEEecCCccCCCEEEEEEEEcCCCE
Confidence 356676654 46778999999999985
No 192
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=39.34 E-value=78 Score=18.30 Aligned_cols=19 Identities=21% Similarity=0.055 Sum_probs=15.9
Q ss_pred CCCCEEEEEEEEEcCCcCC
Q psy9139 89 KCGTHYKINIKLVNSIGES 107 (197)
Q Consensus 89 ~p~~~y~~~v~a~~~~g~~ 107 (197)
.+.....|.|.|.|..|..
T Consensus 72 ~~~D~G~Y~C~a~N~~G~~ 90 (100)
T cd07693 72 GRSDEGVYVCVAHNSLGEA 90 (100)
T ss_pred CcCcCEEEEEEEEccccce
Confidence 5677889999999999873
No 193
>cd00182 TBOX T-box DNA binding domain of the T-box family of transcriptional regulators. The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA binding domain of murine Brachyury (T) gene product, the defining feature of the family. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development and conserved expression patterns, most of the known genes in all species being expressed in mesoderm or mesoderm precursors.
Probab=38.89 E-value=50 Score=22.81 Aligned_cols=23 Identities=13% Similarity=0.281 Sum_probs=20.0
Q ss_pred cceEEEcCCCCCCeEEEEEEEEc
Q psy9139 138 EMPLVIENLLPATRYELTISAKN 160 (197)
Q Consensus 138 ~~~~~i~~L~p~t~Y~v~V~a~n 160 (197)
...|.+.||.|...|.+.+...-
T Consensus 34 ~l~~~vsGLdp~~~Y~v~l~~~~ 56 (188)
T cd00182 34 TLKVKVSGLDPNALYSVLMDLVP 56 (188)
T ss_pred ceEEEEeCCCcccceEEEEEEEE
Confidence 55799999999999999988763
No 194
>smart00425 TBOX Domain first found in the mice T locus (Brachyury) protein.
Probab=38.28 E-value=52 Score=22.75 Aligned_cols=23 Identities=13% Similarity=0.255 Sum_probs=20.0
Q ss_pred cceEEEcCCCCCCeEEEEEEEEc
Q psy9139 138 EMPLVIENLLPATRYELTISAKN 160 (197)
Q Consensus 138 ~~~~~i~~L~p~t~Y~v~V~a~n 160 (197)
...|.+.||.|...|.+.+...-
T Consensus 33 ~l~~~vsGLdp~~~Y~v~l~~~~ 55 (190)
T smart00425 33 TLKYKVSGLDPNALYSVLMDLVP 55 (190)
T ss_pred eeEEEEeCCCccCcEEEEEEEEE
Confidence 55799999999999999988763
No 195
>KOG1225|consensus
Probab=36.67 E-value=97 Score=25.32 Aligned_cols=32 Identities=16% Similarity=0.263 Sum_probs=26.3
Q ss_pred EEEeCCcccEEEECCCCCCCEEEEEEEEEcCC
Q psy9139 73 SVHVDAEYREFTLTQLKCGTHYKINIKLVNSI 104 (197)
Q Consensus 73 ~~~~~~~~~~~~i~~L~p~~~y~~~v~a~~~~ 104 (197)
..++....+.+.+..|+|++.|..++++.-..
T Consensus 410 ~~r~~~~~~~~~~~~~~~g~~~~~~~~~v~~~ 441 (525)
T KOG1225|consen 410 QGRVPGDANSVDIQGLEPGDEYNCSVNTVAAN 441 (525)
T ss_pred ceeeccceeeeeeeeecCCcceeeehhhhhhh
Confidence 55667788889999999999999999886433
No 196
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=36.29 E-value=86 Score=17.93 Aligned_cols=26 Identities=8% Similarity=-0.040 Sum_probs=22.4
Q ss_pred ccEEEECCCCCCCEEEEEEEEEcCCc
Q psy9139 80 YREFTLTQLKCGTHYKINIKLVNSIG 105 (197)
Q Consensus 80 ~~~~~i~~L~p~~~y~~~v~a~~~~g 105 (197)
...+.|.++++.....|.|.+.|..+
T Consensus 45 ~s~L~I~~~~~~DsG~Y~C~a~n~~~ 70 (84)
T cd05861 45 RSTLTFPHATVEDSGTYECAAHESTQ 70 (84)
T ss_pred EEEEEECCCCcCCCEEEEEEEEECcc
Confidence 45689999999999999999998765
No 197
>PF05345 He_PIG: Putative Ig domain; InterPro: IPR008009 This alignment represents the conserved core region of a ~90 residue repeat found in several haemagglutinins and other cell surface proteins. Sequence similarities to Hyalin (IPR003410 from INTERPRO) and the PKD domain (IPR000601 from INTERPRO) suggest an Ig-like fold so this family may be similar in function to the (IPR003791 from INTERPRO) and (IPR003790 from INTERPRO) protein families.
Probab=35.95 E-value=52 Score=16.90 Aligned_cols=13 Identities=31% Similarity=0.746 Sum_probs=11.2
Q ss_pred eEEEEEEEEcCCC
Q psy9139 151 RYELTISAKNDAG 163 (197)
Q Consensus 151 ~Y~v~V~a~n~~G 163 (197)
.|.|.|.|.+..|
T Consensus 37 ~y~~~vtatd~~G 49 (49)
T PF05345_consen 37 TYTFTVTATDGSG 49 (49)
T ss_pred EEEEEEEEEcCCC
Confidence 8999999988765
No 198
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=35.84 E-value=47 Score=17.78 Aligned_cols=25 Identities=8% Similarity=0.065 Sum_probs=19.1
Q ss_pred CcccEEEECCCCCCCEEEEEEEEEc
Q psy9139 78 AEYREFTLTQLKCGTHYKINIKLVN 102 (197)
Q Consensus 78 ~~~~~~~i~~L~p~~~y~~~v~a~~ 102 (197)
.....+.|.++.......|.|.|.|
T Consensus 51 ~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 51 SSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred ceeeEEEEccCCHHhCcEEEEEEEC
Confidence 3455688888888888888888875
No 199
>KOG1378|consensus
Probab=35.40 E-value=61 Score=25.78 Aligned_cols=35 Identities=17% Similarity=0.101 Sum_probs=26.1
Q ss_pred ccEEEECCCCCCCEEEEEEEEEcCCcCCCCCCceEeecCC
Q psy9139 80 YREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTKG 119 (197)
Q Consensus 80 ~~~~~i~~L~p~~~y~~~v~a~~~~g~~~~s~~~~~~t~~ 119 (197)
....++.+|++++.|.|+|-+.. .+|....+++++
T Consensus 108 ih~~~~~~L~~~t~YyY~~Gs~~-----~wS~~f~F~t~p 142 (452)
T KOG1378|consen 108 IHDAVMKNLEPNTRYYYQVGSDL-----KWSEIFSFKTPP 142 (452)
T ss_pred EeeeeecCCCCCceEEEEeCCCC-----CcccceEeECCC
Confidence 45678899999999999984332 256777777766
No 200
>COG5475 Uncharacterized small protein [Function unknown]
Probab=32.94 E-value=49 Score=17.64 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=12.2
Q ss_pred CeeEEEEEEeCCCC
Q psy9139 2 VGNYTCLADNIFGK 15 (197)
Q Consensus 2 ~g~y~c~a~n~~G~ 15 (197)
.|.|.|.=+|..|.
T Consensus 28 ~Gmy~C~Wf~g~g~ 41 (60)
T COG5475 28 DGMYECRWFDGYGV 41 (60)
T ss_pred CCeEEEEEecCCCc
Confidence 48999999999984
No 201
>PF12245 Big_3_2: Bacterial Ig-like domain (group 3); InterPro: IPR022038 This family of proteins is found in bacteria. They have two conserved sequence motifs: AGN and GMT.
Probab=32.84 E-value=85 Score=16.86 Aligned_cols=18 Identities=39% Similarity=0.680 Sum_probs=15.6
Q ss_pred CeEEEEEEEEcCCCCCCc
Q psy9139 150 TRYELTISAKNDAGSTNK 167 (197)
Q Consensus 150 t~Y~v~V~a~n~~G~~~~ 167 (197)
..|.+.+++.+.+|....
T Consensus 23 g~yt~~v~a~D~AGN~~~ 40 (60)
T PF12245_consen 23 GEYTLTVTATDKAGNTSS 40 (60)
T ss_pred ccEEEEEEEEECCCCEEE
Confidence 489999999999998763
No 202
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=32.28 E-value=1.1e+02 Score=17.85 Aligned_cols=19 Identities=11% Similarity=-0.066 Sum_probs=15.0
Q ss_pred CCCCEEEEEEEEEcC-CcCC
Q psy9139 89 KCGTHYKINIKLVNS-IGES 107 (197)
Q Consensus 89 ~p~~~y~~~v~a~~~-~g~~ 107 (197)
.+.....|+|.|.|. .|..
T Consensus 67 ~~~D~G~Y~C~a~N~~~G~~ 86 (95)
T cd05722 67 NKPDEGFYQCVAQNDSLGSI 86 (95)
T ss_pred CCCcCEEEEEEEECCccCcE
Confidence 466778899999998 8753
No 203
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=31.70 E-value=31 Score=25.11 Aligned_cols=11 Identities=45% Similarity=0.884 Sum_probs=9.2
Q ss_pred CCeeEEEEEEe
Q psy9139 1 MVGNYTCLADN 11 (197)
Q Consensus 1 ~~g~y~c~a~n 11 (197)
|+|.|+|...-
T Consensus 48 mSG~YTCtLsY 58 (271)
T PF07354_consen 48 MSGSYTCTLSY 58 (271)
T ss_pred cCCceEEEEEE
Confidence 79999998763
No 204
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=31.69 E-value=60 Score=17.70 Aligned_cols=17 Identities=35% Similarity=0.688 Sum_probs=13.9
Q ss_pred CCCCeEEEEEEEEcCCCC
Q psy9139 147 LPATRYELTISAKNDAGS 164 (197)
Q Consensus 147 ~p~t~Y~v~V~a~n~~G~ 164 (197)
.+| .|.|+|.+.|..|.
T Consensus 50 ~~G-~y~V~ltv~n~~g~ 66 (69)
T PF00801_consen 50 SPG-TYTVTLTVTNGVGS 66 (69)
T ss_dssp SSE-EEEEEEEEEETTSE
T ss_pred CCe-EEEEEEEEEECCCC
Confidence 455 89999999998774
No 205
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=31.63 E-value=29 Score=18.98 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=16.2
Q ss_pred cceEEEcCCCCCCeEEEEEEE
Q psy9139 138 EMPLVIENLLPATRYELTISA 158 (197)
Q Consensus 138 ~~~~~i~~L~p~t~Y~v~V~a 158 (197)
...+.+.+|.+|. |.++...
T Consensus 26 ~G~~~f~~L~~G~-Y~l~E~~ 45 (70)
T PF05738_consen 26 NGKYTFKNLPPGT-YTLKETK 45 (70)
T ss_dssp TSEEEEEEEESEE-EEEEEEE
T ss_pred CCEEEEeecCCeE-EEEEEEE
Confidence 4478999999997 8888766
No 206
>smart00112 CA Cadherin repeats. Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium.
Probab=31.33 E-value=99 Score=17.15 Aligned_cols=16 Identities=31% Similarity=0.628 Sum_probs=13.2
Q ss_pred CCeEEEEEEEEcCCCC
Q psy9139 149 ATRYELTISAKNDAGS 164 (197)
Q Consensus 149 ~t~Y~v~V~a~n~~G~ 164 (197)
...|.+.|+|.+..+.
T Consensus 44 ~~~y~l~v~a~D~~~~ 59 (79)
T smart00112 44 QPEYTLTVEATDGGGP 59 (79)
T ss_pred CCeEEEEEEEEECCCC
Confidence 4789999999988664
No 207
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=30.89 E-value=71 Score=25.66 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=20.8
Q ss_pred cceEEEcCCCCCCeEEEEEEEEcCC
Q psy9139 138 EMPLVIENLLPATRYELTISAKNDA 162 (197)
Q Consensus 138 ~~~~~i~~L~p~t~Y~v~V~a~n~~ 162 (197)
.-...++||.|++.|.+++.+-+..
T Consensus 100 tv~v~~~gL~P~~~yfYRf~~~~~~ 124 (522)
T COG3540 100 TVHVDLRGLSPDQDYFYRFKAGDER 124 (522)
T ss_pred eEEEeccCCCCCceEEEEEeeCCcc
Confidence 4467789999999999999997653
No 208
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=28.94 E-value=1.1e+02 Score=16.99 Aligned_cols=17 Identities=29% Similarity=0.612 Sum_probs=14.4
Q ss_pred CCCCCeEEEEEEEEcCCC
Q psy9139 146 LLPATRYELTISAKNDAG 163 (197)
Q Consensus 146 L~p~t~Y~v~V~a~n~~G 163 (197)
..+| .|.|+|.+.|..|
T Consensus 52 ~~~G-~y~v~l~v~n~~g 68 (79)
T smart00089 52 TKPG-TYTVTLTVTNAVG 68 (79)
T ss_pred CCCc-EEEEEEEEEcCCC
Confidence 3555 8999999999988
No 209
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=28.91 E-value=42 Score=18.92 Aligned_cols=20 Identities=35% Similarity=0.552 Sum_probs=14.7
Q ss_pred cceEEEcCCCCCCeEEEEEEE
Q psy9139 138 EMPLVIENLLPATRYELTISA 158 (197)
Q Consensus 138 ~~~~~i~~L~p~t~Y~v~V~a 158 (197)
.-.|.+.+|.+| .|.+++.+
T Consensus 37 ~G~f~~~~l~~g-~Y~l~v~~ 56 (82)
T PF13620_consen 37 DGRFSFEGLPPG-TYTLRVSA 56 (82)
T ss_dssp TSEEEEEEE-SE-EEEEEEEB
T ss_pred CceEEEEccCCE-eEEEEEEE
Confidence 457999999995 68887754
No 210
>PHA03189 UL14 tegument protein; Provisional
Probab=28.89 E-value=1e+02 Score=23.12 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=12.4
Q ss_pred CeeEEEEEEeCCCCc
Q psy9139 2 VGNYTCLADNIFGKD 16 (197)
Q Consensus 2 ~g~y~c~a~n~~G~~ 16 (197)
+|.|.|+..|.....
T Consensus 145 aG~Y~CvLrN~tHgl 159 (348)
T PHA03189 145 AGMYECVLRNETHGL 159 (348)
T ss_pred cceEEEEecccccee
Confidence 699999999987643
No 211
>cd00146 PKD polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is presented here. The domain is also found in microbial collagenases and chitinases.
Probab=28.29 E-value=86 Score=17.58 Aligned_cols=21 Identities=29% Similarity=0.570 Sum_probs=16.1
Q ss_pred CCCCCeEEEEEEEEcCCCCCCc
Q psy9139 146 LLPATRYELTISAKNDAGSTNK 167 (197)
Q Consensus 146 L~p~t~Y~v~V~a~n~~G~~~~ 167 (197)
.++| .|.++|.+.|..|.+..
T Consensus 54 ~~~G-~y~v~l~v~d~~g~~~~ 74 (81)
T cd00146 54 TKPG-TYTVTLTVTNAVGSSST 74 (81)
T ss_pred CCCc-EEEEEEEEEeCCCCEEE
Confidence 3555 89999999998876553
No 212
>KOG3834|consensus
Probab=27.05 E-value=1.8e+02 Score=23.06 Aligned_cols=65 Identities=17% Similarity=0.247 Sum_probs=43.8
Q ss_pred EEEEeecCCeEEEEeeeCC-CCCccccEEEEEEEe----CCCCcEEEEeCCcccEEEECCCCCCCEEEEEE
Q psy9139 33 ILLQSTTTHSISILWKPSY-DGGAIITHYIVSYRD----RTEDWQSVHVDAEYREFTLTQLKCGTHYKINI 98 (197)
Q Consensus 33 ~~~~~~~~~~~~l~W~~~~-~~~~~i~~y~v~~~~----~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v 98 (197)
+.+.+.....++..|-.+. .-++++.++.|+|.. ....|..+.+.... -..+-+|.+++.|.+-+
T Consensus 68 ltv~n~kt~~~R~v~I~ps~~wggqllGvsvrFcsf~~A~~~vwHvl~V~p~S-PaalAgl~~~~DYivG~ 137 (462)
T KOG3834|consen 68 LTVYNSKTQEVRIVEIVPSNNWGGQLLGVSVRFCSFDGAVESVWHVLSVEPNS-PAALAGLRPYTDYIVGI 137 (462)
T ss_pred EEEEecccceeEEEEecccccccccccceEEEeccCccchhheeeeeecCCCC-HHHhcccccccceEecc
Confidence 5555555666777787764 334458899999973 34457766655443 45677899999988665
No 213
>PF09430 DUF2012: Protein of unknown function (DUF2012); InterPro: IPR019008 This domain is found in different proteins, including uncharacterised protein family UPF0480 and nodal modulators. A nodal modulator has been identified as part of a protein complex that participates in the nodal signaling pathway during vertebrate development [].
Probab=26.66 E-value=86 Score=19.80 Aligned_cols=21 Identities=24% Similarity=0.475 Sum_probs=15.6
Q ss_pred cceEEEcCCCCCCeEEEEEEEE
Q psy9139 138 EMPLVIENLLPATRYELTISAK 159 (197)
Q Consensus 138 ~~~~~i~~L~p~t~Y~v~V~a~ 159 (197)
+..|.+.++.+| .|.+.|.+.
T Consensus 29 dG~F~f~~Vp~G-sY~L~V~s~ 49 (123)
T PF09430_consen 29 DGSFVFHNVPPG-SYLLEVHSP 49 (123)
T ss_pred CCEEEeCCCCCc-eEEEEEECC
Confidence 457889998888 677776654
No 214
>PF14292 SusE: SusE outer membrane protein
Probab=24.61 E-value=1.9e+02 Score=18.09 Aligned_cols=34 Identities=18% Similarity=0.530 Sum_probs=22.0
Q ss_pred EEEEeecCCeEEEEeeeCCCCCc-cccEEEEEEEe
Q psy9139 33 ILLQSTTTHSISILWKPSYDGGA-IITHYIVSYRD 66 (197)
Q Consensus 33 ~~~~~~~~~~~~l~W~~~~~~~~-~i~~y~v~~~~ 66 (197)
+.+.......+++.|.++..+.. ....|.++...
T Consensus 37 i~L~~~~~~a~tftW~~~~~~~~~a~v~Y~lq~~~ 71 (122)
T PF14292_consen 37 IVLDEASDNAVTFTWTAADYGGPDAPVTYTLQFDK 71 (122)
T ss_pred EEecccCCceEEEEEECCccCCCCCceEEEEEEec
Confidence 33333445689999999864443 34468888864
No 215
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=24.26 E-value=1.5e+02 Score=16.93 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=18.8
Q ss_pred ccEEEECCCCCCCEEEEEEEEEcCCcCC
Q psy9139 80 YREFTLTQLKCGTHYKINIKLVNSIGES 107 (197)
Q Consensus 80 ~~~~~i~~L~p~~~y~~~v~a~~~~g~~ 107 (197)
...+.|.++... ..|.|.|.|..|..
T Consensus 48 ~s~L~i~~~~d~--g~Y~C~A~N~~G~~ 73 (81)
T cd05749 48 PSVLNVPGLNET--SKFSCEAHNAKGVT 73 (81)
T ss_pred CCEEEEccccCC--eEEEEEEEeccCcE
Confidence 346777776543 57899999999853
No 216
>TIGR03769 P_ac_wall_RPT actinobacterial surface-anchored protein domain. This model describes a repeat domain that one to three times in Actinobacterial proteins, some of which have LPXTG-type sortase recognition motifs for covalent attachment to the Gram-positive cell wall. Where it occurs with duplication in an LPXTG-anchored protein, it tends to be adjacent to the substrate-binding protein of the gene trio of an ABC transporter system, where that substrate-binding protein has a single copy of this same domain. This arrangement suggests a substrate-binding relay system, with the LPXTG protein acting as a substrate receptor.
Probab=24.25 E-value=1.1e+02 Score=15.15 Aligned_cols=13 Identities=38% Similarity=0.654 Sum_probs=9.7
Q ss_pred CCCCeEEEEEEEEc
Q psy9139 147 LPATRYELTISAKN 160 (197)
Q Consensus 147 ~p~t~Y~v~V~a~n 160 (197)
+|| .|.+.++|.-
T Consensus 11 ~PG-~Y~l~~~a~~ 23 (41)
T TIGR03769 11 KPG-TYTLTVQATA 23 (41)
T ss_pred CCe-EEEEEEEEEE
Confidence 565 7899988853
No 217
>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus. These homologous CBDs are distinct in their selectivity for binding amorphous and not crystalline cellulose []. Multidimensional heteronuclear nuclear magnetic resonance (NMR) spectroscopy was used to determine the tertiary structure of the 152 amino acid N-terminal cellulose-binding domain from C. fimi 1,4-beta-glucanase CenC (CBDN1) []. The tertiary structure of CBDN1 is strikingly similar to that of the bacterial 1,3-1,4-beta-glucanases, as well as other sugar-binding proteins with jelly-roll folds.; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 3OEA_B 2ZEX_B 3OEB_A 2ZEY_A 2ZEW_A 1GUI_A 2W5F_A 2WZE_A 2WYS_A 2ZEZ_B ....
Probab=23.94 E-value=84 Score=19.33 Aligned_cols=20 Identities=30% Similarity=0.537 Sum_probs=15.7
Q ss_pred cCCCCCCeEEEEEEEEcCCC
Q psy9139 144 ENLLPATRYELTISAKNDAG 163 (197)
Q Consensus 144 ~~L~p~t~Y~v~V~a~n~~G 163 (197)
..|++|..|.|++.+....+
T Consensus 56 ~~l~~G~~Y~~s~~vk~~~~ 75 (131)
T PF02018_consen 56 ISLKPGKTYTVSFWVKADSG 75 (131)
T ss_dssp EEE-TTSEEEEEEEEEESSS
T ss_pred eEecCCCEEEEEEEEEeCCC
Confidence 57899999999999986655
No 218
>PF07198 DUF1410: Protein of unknown function (DUF1410); InterPro: IPR009849 This entry represents a conserved region approximately 100 residues long, multiple copies of which are sometimes found within hypothetical Ureaplasma parvum proteins of unknown function.
Probab=23.66 E-value=83 Score=17.14 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=14.1
Q ss_pred EcCCCCCCeEEEEEEEE
Q psy9139 143 IENLLPATRYELTISAK 159 (197)
Q Consensus 143 i~~L~p~t~Y~v~V~a~ 159 (197)
+.+|.++..|.+.=...
T Consensus 42 ~~~L~~n~~Y~l~~I~~ 58 (66)
T PF07198_consen 42 LSNLPPNHKYKLKKIVL 58 (66)
T ss_pred ccCCCCCCEEEEEEEEE
Confidence 89999999999875544
No 219
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=23.40 E-value=1.4e+02 Score=17.96 Aligned_cols=19 Identities=21% Similarity=0.301 Sum_probs=15.3
Q ss_pred EEEECCCCCCCEEEEEEEE
Q psy9139 82 EFTLTQLKCGTHYKINIKL 100 (197)
Q Consensus 82 ~~~i~~L~p~~~y~~~v~a 100 (197)
+..+.++.++..|.|+|..
T Consensus 48 ~~~v~~~~~g~~Y~y~i~g 66 (103)
T cd02856 48 HGFLPGIKAGQRYGFRVHG 66 (103)
T ss_pred EEEECCCCCCCEEEEEECC
Confidence 4567778899999999965
No 220
>cd08544 Reeler Reeler, the N-terminal domain of reelin, F-spondin, and a variety of other proteins. This domain is found at the N-terminus of F-spondin, a protein attached to the extracellular matrix, which plays roles in neuronal development and vascular remodelling. The F-spondin reeler domain has been reported to bind heparin. The reeler domain is also found at the N-terminus of reelin, an extracellular glycoprotein involved in the development of the brain cortex, and in a variety of other eukaryotic proteins with different domain architectures, including the animal ferric-chelate reductase 1 or stromal cell-derived receptor 2, a member of the cytochrome B561 family, which reduces ferric iron before its transport from the endosome to the cytoplasm. Also included is the insect putative defense protein 1, which is expressed upon bacterial infection and appears to contain a single reeler domain.
Probab=22.85 E-value=1.1e+02 Score=19.47 Aligned_cols=21 Identities=19% Similarity=0.559 Sum_probs=15.1
Q ss_pred ecCCeEEEEeeeCCCCCcccc
Q psy9139 38 TTTHSISILWKPSYDGGAIIT 58 (197)
Q Consensus 38 ~~~~~~~l~W~~~~~~~~~i~ 58 (197)
.....+.+.|.+|....+.|.
T Consensus 93 ~~k~~v~~~W~AP~~~~g~V~ 113 (135)
T cd08544 93 SKKTSVTFTWTAPSNGSGCVT 113 (135)
T ss_pred CCCceeEEEEECCCCCCccEE
Confidence 345688999999886655544
No 221
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=22.78 E-value=1.4e+02 Score=17.79 Aligned_cols=28 Identities=11% Similarity=0.214 Sum_probs=22.8
Q ss_pred CcccEEEECCCCCCCEEEEEEEEEcCCc
Q psy9139 78 AEYREFTLTQLKCGTHYKINIKLVNSIG 105 (197)
Q Consensus 78 ~~~~~~~i~~L~p~~~y~~~v~a~~~~g 105 (197)
....++.|.+++......|.|...+..+
T Consensus 65 ~~~~sL~I~~v~~sD~G~Y~C~v~~~~~ 92 (106)
T cd05714 65 PGDASLVITDLRLEDSGRYRCEVIDGIE 92 (106)
T ss_pred CCcceEEECCCCHHHCEEEEEEEEcCCC
Confidence 4567899999999999999998887543
No 222
>KOG3632|consensus
Probab=22.77 E-value=58 Score=28.72 Aligned_cols=88 Identities=23% Similarity=0.247 Sum_probs=53.2
Q ss_pred EEEeCCCC-ceeEEEE-EecCCCCCCE-EEEEeecCCeEEEEeeeCCCCCccccEEEEEEEeCCCCcEEEEeCCcccEEE
Q psy9139 8 LADNIFGK-DDIYYQV-TILSPPGVPN-ILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDRTEDWQSVHVDAEYREFT 84 (197)
Q Consensus 8 ~a~n~~G~-~~~~~~~-~~~~~P~~p~-~~~~~~~~~~~~l~W~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~ 84 (197)
......|+ +.....| .-...|..|. +++...+..+..++|-+..... -.+.|.+.++.. ........++
T Consensus 650 q~ltSrGsqd~lrc~Llvgg~a~vvpsqlrv~n~tqtSa~itwvp~nsn~-----~Hviyln~eE~~---ps~a~~y~yt 721 (1335)
T KOG3632|consen 650 QRLTSRGSQDQLRCILLVGGAAPVVPSQLRVWNATQTSAMITWVPFNSNF-----LHVIYLNAEEPR---PSVAEMYNYT 721 (1335)
T ss_pred hhhhccCCCCcceeeEeccccccccchhhhhhhhhchhhheeeeecCCCc-----ceeeecCCccCC---CchhhhhHHH
Confidence 34455664 3333333 3345677776 8888899999999998743211 123333222211 1122344577
Q ss_pred ECCCCCCCEEEEEEEEEcC
Q psy9139 85 LTQLKCGTHYKINIKLVNS 103 (197)
Q Consensus 85 i~~L~p~~~y~~~v~a~~~ 103 (197)
+-+|.|++.|..+|.+.-.
T Consensus 722 f~~lrpgt~y~a~vea~~p 740 (1335)
T KOG3632|consen 722 FMRLRPGTDYWASVEAALP 740 (1335)
T ss_pred HhccCCCCccceecccccC
Confidence 8899999999999987654
No 223
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=22.72 E-value=1.4e+02 Score=17.44 Aligned_cols=28 Identities=0% Similarity=-0.177 Sum_probs=22.7
Q ss_pred cccEEEECCCCCCCEEEEEEEEEcCCcC
Q psy9139 79 EYREFTLTQLKCGTHYKINIKLVNSIGE 106 (197)
Q Consensus 79 ~~~~~~i~~L~p~~~y~~~v~a~~~~g~ 106 (197)
...++.|.+++......|.|...+..+.
T Consensus 63 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~ 90 (100)
T cd05713 63 GSVALRIHNVRASDEGLYTCFFQSDGFY 90 (100)
T ss_pred CcEEEEEEcCChhhCEEEEEEEecCCcE
Confidence 3467899999999999999998876543
No 224
>PF02014 Reeler: Reeler domain Schematic picture including Reeler domain; InterPro: IPR002861 Extracellular matrix (ECM) proteins play an important role in early cortical development, specifically in the formation of neural connections and in controlling the cyto-architecture of the central nervous system. The product of the reeler gene in mouse is reelin,a large extracellular protein secreted by pioneer neurons that coordinates cell positioning during neurodevelopment []. F-spondin and mindin are a family of matrix-attached adhesion molecules that share structural similarities and overlapping domains of expression. Both F-spondin and mindin promote adhesion and outgrowth of hippocampal embryonic neurons and bind to a putative receptor(s) expressed on both hippocampal and sensory neurons []. This domain of unknown function is found at the N terminus of reelin and F-spondin.; PDB: 2ZOT_B 2ZOU_B 3COO_A.
Probab=21.91 E-value=1.7e+02 Score=18.62 Aligned_cols=19 Identities=21% Similarity=0.422 Sum_probs=10.9
Q ss_pred CCeEEEEeeeCCCCCcccc
Q psy9139 40 THSISILWKPSYDGGAIIT 58 (197)
Q Consensus 40 ~~~~~l~W~~~~~~~~~i~ 58 (197)
...+.+.|.+|.+..+.|.
T Consensus 99 K~~v~~~W~AP~~~~g~V~ 117 (132)
T PF02014_consen 99 KTSVTFTWTAPADFSGCVT 117 (132)
T ss_dssp BSEEEEEEE--STTS-EEE
T ss_pred ccEEEEEEcCCCCCCceEE
Confidence 4678899999875444443
No 225
>PF15418 DUF4625: Domain of unknown function (DUF4625)
Probab=21.51 E-value=1.3e+02 Score=19.38 Aligned_cols=21 Identities=19% Similarity=0.426 Sum_probs=17.2
Q ss_pred CCCCCCeEEEEEEEEcCCCCCC
Q psy9139 145 NLLPATRYELTISAKNDAGSTN 166 (197)
Q Consensus 145 ~L~p~t~Y~v~V~a~n~~G~~~ 166 (197)
++.+| .|.|.+++.+..|...
T Consensus 103 ~a~~G-~YH~~i~VtD~~Gn~~ 123 (132)
T PF15418_consen 103 DAPAG-DYHFMITVTDAAGNQT 123 (132)
T ss_pred CCCCc-ceEEEEEEEECCCCEE
Confidence 44555 9999999999999865
No 226
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=21.19 E-value=1.9e+02 Score=16.93 Aligned_cols=27 Identities=15% Similarity=0.002 Sum_probs=21.6
Q ss_pred cccEEEECCCCCCCEEEEEEEEEcCCc
Q psy9139 79 EYREFTLTQLKCGTHYKINIKLVNSIG 105 (197)
Q Consensus 79 ~~~~~~i~~L~p~~~y~~~v~a~~~~g 105 (197)
...+++|.++.+.....|.|.+.+..+
T Consensus 65 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~ 91 (105)
T cd00099 65 SSFTLTISSLQPEDSAVYYCAVSLSGG 91 (105)
T ss_pred CEEEEEECCCCHHHCEEEEEEEecCCC
Confidence 455789999999988899888876553
No 227
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=21.06 E-value=1.9e+02 Score=16.96 Aligned_cols=73 Identities=10% Similarity=0.032 Sum_probs=41.4
Q ss_pred cCCeEEEEeeeCCCCCccccEEEEEEEeCCCCcEEE-E--eCCcccEEEECCCCCCCEEEEEEEEEc---CCcCCCCCCc
Q psy9139 39 TTHSISILWKPSYDGGAIITHYIVSYRDRTEDWQSV-H--VDAEYREFTLTQLKCGTHYKINIKLVN---SIGESKPSKT 112 (197)
Q Consensus 39 ~~~~~~l~W~~~~~~~~~i~~y~v~~~~~~~~~~~~-~--~~~~~~~~~i~~L~p~~~y~~~v~a~~---~~g~~~~s~~ 112 (197)
...+++|.|..... . ..|.+........+... . .......+.|..+.+.....|+|+... ...++.+|++
T Consensus 14 ~G~~VTL~C~~~~~-~---~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~~~~~~~wS~~Sdp 89 (94)
T cd05711 14 SGENVTLQCHSDIR-F---DRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSYNHSLYEWSAPSDP 89 (94)
T ss_pred CCCeEEEEEecCCC-C---CEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEECCCCCccccCCCCC
Confidence 46778888865431 1 23433332222222111 1 122344689999999999999998753 2346677776
Q ss_pred eEe
Q psy9139 113 IAA 115 (197)
Q Consensus 113 ~~~ 115 (197)
+.+
T Consensus 90 l~l 92 (94)
T cd05711 90 LKI 92 (94)
T ss_pred eEE
Confidence 543
No 228
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=20.75 E-value=2.1e+02 Score=17.20 Aligned_cols=62 Identities=5% Similarity=-0.026 Sum_probs=29.5
Q ss_pred ecCCeEEEEeeeCCCCCccccEEEEEEEeCCCC----cEEEEeCCcccEEEECCCCCCCEE-EEEEEEEcCC
Q psy9139 38 TTTHSISILWKPSYDGGAIITHYIVSYRDRTED----WQSVHVDAEYREFTLTQLKCGTHY-KINIKLVNSI 104 (197)
Q Consensus 38 ~~~~~~~l~W~~~~~~~~~i~~y~v~~~~~~~~----~~~~~~~~~~~~~~i~~L~p~~~y-~~~v~a~~~~ 104 (197)
.....+.|.|.+|.....+ .+.|...... -..+.+..+ ..+-+.+..+.... .|.|.|.|..
T Consensus 16 ~eG~~~~L~C~pP~g~P~P----~i~W~~~~~~~i~~~~Ri~~~~~-GnL~fs~v~~~D~g~~Y~C~a~~~~ 82 (95)
T cd05845 16 EEGDSVVLPCNPPKSAVPL----RIYWMNSDLLHITQDERVSMGQN-GNLYFANVEEQDSHPDYICHAHFPG 82 (95)
T ss_pred ecCCCEEEEecCCCCCCCC----EEEEECCCCccccccccEEECCC-ceEEEEEEehhhCCCCeEEEEEccc
Confidence 4577888999876522222 2334321111 111222222 34555555554443 4677777655
No 229
>KOG0264|consensus
Probab=20.37 E-value=3.5e+02 Score=21.50 Aligned_cols=14 Identities=29% Similarity=0.437 Sum_probs=11.8
Q ss_pred CCeeEEEEEEeCCC
Q psy9139 1 MVGNYTCLADNIFG 14 (197)
Q Consensus 1 ~~g~y~c~a~n~~G 14 (197)
|.+...|+++|..+
T Consensus 271 h~~~vn~~~fnp~~ 284 (422)
T KOG0264|consen 271 HSAEVNCVAFNPFN 284 (422)
T ss_pred cCCceeEEEeCCCC
Confidence 67888899999887
No 230
>KOG3585|consensus
Probab=20.28 E-value=1.2e+02 Score=23.04 Aligned_cols=22 Identities=14% Similarity=0.341 Sum_probs=19.3
Q ss_pred cceEEEcCCCCCCeEEEEEEEE
Q psy9139 138 EMPLVIENLLPATRYELTISAK 159 (197)
Q Consensus 138 ~~~~~i~~L~p~t~Y~v~V~a~ 159 (197)
...|.|+||.|...|.|.+.-.
T Consensus 57 ~l~~~VsGLdp~s~Y~i~l~~~ 78 (328)
T KOG3585|consen 57 ALKFKVSGLDPNSLYSILLELV 78 (328)
T ss_pred ccceeeccCCcccceEEEEEEE
Confidence 5579999999999999988765
Done!