RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9139
(197 letters)
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 99.5 bits (248), Expect = 2e-26
Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 6/122 (4%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVPNILLQSTTTHSISILWK-PSYDGGAIITHYI 61
GNY C A N G++ + + + P P+I + + + + P GG I Y
Sbjct: 89 GNYNCTAVNRIGQESLEFILVQADTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYK 148
Query: 62 VSYRDRTED-----WQSVHVDAEYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAAS 116
+R E+ W + T+ LK T Y + + +N G + S
Sbjct: 149 AEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFK 208
Query: 117 TK 118
T+
Sbjct: 209 TQ 210
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 97.6 bits (243), Expect = 2e-24
Identities = 40/206 (19%), Positives = 67/206 (32%), Gaps = 48/206 (23%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVP-NILLQSTTTHSISILWK-PSYDGGAIITHY 60
G Y C A N G Y + + P P + + + + + + P GG I HY
Sbjct: 171 GRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHY 230
Query: 61 IVSYRD-RTEDWQSVHVDAEYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAAST-- 117
V ++ +E W+ V L L+ T Y+I + VN G+ SK T
Sbjct: 231 QVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLP 290
Query: 118 ----------------------------------------KGEDQTDWINIPLSNLDEAL 137
+ +D+ D +
Sbjct: 291 VREPSPPSIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWL---EKKVQGN 347
Query: 138 EMPLVIENLLPATRYELTISAKNDAG 163
+ +++E+L YE+ I+A N G
Sbjct: 348 KDHIILEHLQWTMGYEVQITAANRLG 373
Score = 77.5 bits (191), Expect = 3e-17
Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 6/114 (5%)
Query: 5 YTCLADNIFGK----DDIYYQVTILSPPGVPNILLQSTTTHSISILWKPSYDGGAIITHY 60
A N G+ +Q + P P+I Q ++ S + DGGA I Y
Sbjct: 267 IRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSIHGQPSSGKSFKLSITKQDDGGAPILEY 326
Query: 61 IVSYR--DRTEDWQSVHVDAEYREFTLTQLKCGTHYKINIKLVNSIGESKPSKT 112
IV YR D+ + W V L L+ Y++ I N +G S+P+
Sbjct: 327 IVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVY 380
Score = 31.3 bits (71), Expect = 0.18
Identities = 7/26 (26%), Positives = 9/26 (34%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPP 28
G Y C A + G + I P
Sbjct: 76 GRYDCEAASRIGGHQKSMYLDIEYAP 101
>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor;
2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A
1lwr_A
Length = 209
Score = 93.3 bits (232), Expect = 5e-24
Identities = 34/207 (16%), Positives = 63/207 (30%), Gaps = 52/207 (25%)
Query: 21 QVTILSPPGVPNILLQSTTTHSISILWK-PSYDGGAIITHYIVSYR-DRTEDWQSVHVDA 78
+ P P+I + + + + P GG I Y +R E W S DA
Sbjct: 2 PLAQADTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDA 61
Query: 79 EY----REFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTKG--------------- 119
+ T+ LK T Y + + +N G + S T+
Sbjct: 62 KEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQMGE 121
Query: 120 ---------------------------EDQTDWINIPLSNLDEALEMPLVIENLLPATRY 152
++W + +++++L Y
Sbjct: 122 DGNSIKVNLIKQDDGGSPIRHYLVRYRALSSEWK---PEIRLPSGSDHVMLKSLDWNAEY 178
Query: 153 ELTISAKNDAG-STNKNYVFATLSVNG 178
E+ + A+N G S ++VF T + +
Sbjct: 179 EVYVVAENQQGKSKAAHFVFRTAAAHH 205
>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III
module, beta-sheet sandwich, cell membrane,
glycoprotein, immunoglobulin domain; NMR {Homo sapiens}
Length = 114
Score = 87.6 bits (217), Expect = 6e-23
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 23 TILSPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYR--DRTEDWQSVHVDAEY 80
+ P P+I Q ++ S + DGGA I YIV YR D+ + W V
Sbjct: 4 ASMREPSPPSIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNK 63
Query: 81 REFTLTQLKCGTHYKINIKLVNSIGESKPS 110
L L+ Y++ I N +G S+P+
Sbjct: 64 DHIILEHLQWTMGYEVQITAANRLGYSEPT 93
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 90.6 bits (225), Expect = 3e-22
Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 4/125 (3%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVP-NILLQSTTTHSISILWK-PSYDGGAIITHY 60
G Y A N FG D ++ + P P + + + S+++ W P+ DGG+ IT+Y
Sbjct: 174 GFYVVCAKNRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNY 233
Query: 61 IVSYRDR-TEDWQSVHVDAEYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTKG 119
IV E W V E R +T+ L T Y+ + N G SKPS+ +
Sbjct: 234 IVEKCATTAERWLRVGQARETR-YTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITK 292
Query: 120 EDQTD 124
ED+T
Sbjct: 293 EDKTR 297
Score = 28.6 bits (64), Expect = 1.4
Identities = 5/26 (19%), Positives = 7/26 (26%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPP 28
Y A N G + + P
Sbjct: 75 TVYQVRATNQGGSVSGTASLEVEVPA 100
>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 116
Score = 83.6 bits (207), Expect = 3e-21
Identities = 24/95 (25%), Positives = 46/95 (48%)
Query: 27 PPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDRTEDWQSVHVDAEYREFTLT 86
P P+ L T+ I + W P + ++ YI+ Y + ++V VD++ R +++
Sbjct: 17 VPDQPSSLHVRPQTNCIIMSWTPPLNPNIVVRGYIIGYGVGSPYAETVRVDSKQRYYSIE 76
Query: 87 QLKCGTHYKINIKLVNSIGESKPSKTIAASTKGED 121
+L+ +HY I++K N+ GE P A +
Sbjct: 77 RLESSSHYVISLKAFNNAGEGVPLYESATTRSITS 111
>1x3d_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 118
Score = 83.6 bits (207), Expect = 3e-21
Identities = 22/109 (20%), Positives = 46/109 (42%), Gaps = 2/109 (1%)
Query: 14 GKDDIYYQVTILSPPGVPNIL-LQSTTTHSISILWKPSYDGGAIITHYIVSYRDRTEDWQ 72
G T+ P +PN + + T +S+++ WK D G+ I ++++ + + + +
Sbjct: 4 GSSGAEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGNGE 63
Query: 73 SVHV-DAEYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTKGE 120
++F +T+L K + N G S S+ + T G
Sbjct: 64 FCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGC 112
>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 121
Score = 82.4 bits (204), Expect = 8e-21
Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 5/114 (4%)
Query: 13 FGKDDIYYQVTIL---SPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDRTE 69
G + + P P L + +I++ W +DG + + YI+ +
Sbjct: 3 SGSSGRSAHLRVRQLPHAPEHPVATLSTVERRAINLTWTKPFDGNSPLIRYILEMSENNA 62
Query: 70 DWQSV--HVDAEYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTKGED 121
W + VD + T+ L Y+ + VN +G+ + SK + E
Sbjct: 63 PWTVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPES 116
>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 107
Score = 79.8 bits (197), Expect = 7e-20
Identities = 18/96 (18%), Positives = 38/96 (39%), Gaps = 1/96 (1%)
Query: 23 TILSPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDR-TEDWQSVHVDAEYR 81
+ S PG P +++ +T ++ + W P + + Y + Y ++ + +
Sbjct: 3 SGSSGPGRPTMMISTTAMNTALLQWHPPKELPGELLGYRLQYCRADEARPNTIDFGKDDQ 62
Query: 82 EFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAAST 117
FT+T L GT Y + N G + + +
Sbjct: 63 HFTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEIRTP 98
>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 126
Score = 79.8 bits (197), Expect = 9e-20
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Query: 26 SPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDRTEDWQSVHVDAEYREFTL 85
P VP+ L SI + W P + ++ Y + Y + Q++ VD + R +T+
Sbjct: 26 RVPEVPSSLHVRPLVTSIVVSWTPPENQNIVVRGYAIGYGIGSPHAQTIKVDYKQRYYTI 85
Query: 86 TQLKCGTHYKINIKLVNSIGESKP-SKTIAASTK 118
L +HY I +K N++GE P ++
Sbjct: 86 ENLDPSSHYVITLKAFNNVGEGIPLYESAVTRPH 119
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural
protein; 1.65A {Homo sapiens}
Length = 197
Score = 80.9 bits (200), Expect = 2e-19
Identities = 35/186 (18%), Positives = 62/186 (33%), Gaps = 51/186 (27%)
Query: 25 LSPPGVP-NILLQSTTTHSISILWK-PSYDGGAIITHYIVSYRDR-TEDWQSVHVDAEYR 81
+ PG P ++ ++ T S+++ W P DGG+ I +YIV R+ + + +V +
Sbjct: 3 MDTPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKT 62
Query: 82 EFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTKGE--------------------- 120
+ + QL+ G Y + N G P++T + E
Sbjct: 63 SWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERPLPPGKITLMDVTRNSVSLS 122
Query: 121 ----------------------DQTDWINIPLSNLDEALEMPLVIENLLPATRYELTISA 158
W + EA I L+ Y +SA
Sbjct: 123 WEKPEHDGGSRILGYIVEMQTKGSDKWATCATVKVTEA-----TITGLIQGEEYSFRVSA 177
Query: 159 KNDAGS 164
+N+ G
Sbjct: 178 QNEKGI 183
Score = 67.0 bits (164), Expect = 3e-14
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 2/98 (2%)
Query: 22 VTILSPPGVP-NILLQSTTTHSISILW-KPSYDGGAIITHYIVSYRDRTEDWQSVHVDAE 79
V P P I L T +S+S+ W KP +DGG+ I YIV + + D + +
Sbjct: 97 VKASERPLPPGKITLMDVTRNSVSLSWEKPEHDGGSRILGYIVEMQTKGSDKWATCATVK 156
Query: 80 YREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAAST 117
E T+T L G Y + N G S P +
Sbjct: 157 VTEATITGLIQGEEYSFRVSAQNEKGISDPRQLSVPVI 194
>1x4x_A Fibronectin type-III domain containing protein 3A; FN3,
immunoglobulin-like beta- sandwich fold, KIAA0970,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 106
Score = 77.7 bits (192), Expect = 4e-19
Identities = 14/95 (14%), Positives = 31/95 (32%), Gaps = 2/95 (2%)
Query: 26 SPPGVPNIL-LQSTTTHSISILWKPSYDGGAIITHYIVSYRDRTEDWQSVHVDAEYREFT 84
S P + + + W+ G +T Y + + Q + +
Sbjct: 6 SGPDQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGVEGSMQICYCGPG-LSYE 64
Query: 85 LTQLKCGTHYKINIKLVNSIGESKPSKTIAASTKG 119
+ L T Y ++ ++ +G S+ +A T
Sbjct: 65 IKGLSPATTYYCRVQALSVVGAGPFSEVVACVTPP 99
>2crm_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 77.9 bits (192), Expect = 5e-19
Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 6/109 (5%)
Query: 14 GKDDIYYQVTILSPPGVPN--ILLQSTTTHSISILWK-PSYDGGAIITHYIVSYRD--RT 68
G + T PG+P + +HS I W P +GGA I Y+V +
Sbjct: 4 GSSGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNG 63
Query: 69 EDWQSVHVDAEYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAAST 117
W+ ++ A RE +L G Y++ + ++ G+S S+++ T
Sbjct: 64 NKWEMIYSGAT-REHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQT 111
>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91,
TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 110
Score = 76.3 bits (188), Expect = 1e-18
Identities = 24/103 (23%), Positives = 37/103 (35%), Gaps = 7/103 (6%)
Query: 23 TILSPPGVP-----NILLQSTTTHSISILWKPSYDGGAIITHYIVSYRD-RTEDWQSVHV 76
+ S VP + T +S ++ WK YI+ D ++ V+V
Sbjct: 2 SSGSSGPVPATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELDDGNGGQFREVYV 61
Query: 77 DAEYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTKG 119
E T+ L + Y +K N G S SKT+ T
Sbjct: 62 GKE-TMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSE 103
>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, cell adhesion; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 108
Score = 76.5 bits (188), Expect = 1e-18
Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 2/97 (2%)
Query: 26 SPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDRTEDWQSVH--VDAEYREF 83
S P L+ T + + W P + Y++ R ++ W+ + V E
Sbjct: 6 SGLSPPRGLVAVRTPRGVLLHWDPPELVPKRLDGYVLEGRQGSQGWEVLDPAVAGTETEL 65
Query: 84 TLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTKGE 120
+ L Y+ + S PS T ST G
Sbjct: 66 LVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVSTSGL 102
>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain,
structural genomics., NPPSFA; NMR {Homo sapiens}
Length = 120
Score = 76.6 bits (189), Expect = 1e-18
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 3/102 (2%)
Query: 14 GKDDIYYQVTILSPPGVP-NILLQSTTTHSISILWK-PSYDGGAIITHYIVSYRD-RTED 70
G + I+ PG P + ++ ++++ W P DG A IT Y + D ++ +
Sbjct: 4 GSSGASIDIQIIDRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSME 63
Query: 71 WQSVHVDAEYREFTLTQLKCGTHYKINIKLVNSIGESKPSKT 112
W +V T+T+L G Y + N G S+ +
Sbjct: 64 WFTVIEHYHRTSATITELVIGNEYYFRVFSENMCGLSEDATM 105
Score = 25.8 bits (57), Expect = 5.5
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 142 VIENLLPATRYELTISAKNDAG 163
I L+ Y + ++N G
Sbjct: 77 TITELVIGNEYYFRVFSENMCG 98
>1x5x_A Fibronectin type-III domain containing protein 3A; structural
genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 109
Score = 75.8 bits (187), Expect = 2e-18
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Query: 23 TILSPPGVP-NILLQSTTTHSISILW-KPSYDGGAIITHYIVSYRD-RTEDWQSVHVDAE 79
+ S P +P + +L +S+ W KPS YI+ + + D E
Sbjct: 3 SGSSGPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGE 62
Query: 80 YREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAAST 117
+T+ L+ T YK + NS G+S PS+ + +T
Sbjct: 63 DLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTT 100
>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1,
NCAM-120, CD56 antigen, membra protein, glycoprotein,
structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo
sapiens}
Length = 122
Score = 75.2 bits (185), Expect = 5e-18
Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 6/105 (5%)
Query: 26 SPPGVPNILLQSTTTHSISILWK-PSYDGGAIITHYIVSYRDRTED-----WQSVHVDAE 79
S P P+I + + + + P GG I Y +R E+ W +
Sbjct: 6 SGPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASM 65
Query: 80 YREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTKGEDQTD 124
T+ LK T Y + + +N G + S T+ +
Sbjct: 66 EGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPS 110
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 80.2 bits (197), Expect = 5e-18
Identities = 36/213 (16%), Positives = 53/213 (24%), Gaps = 52/213 (24%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVP--NILLQSTTTHSISILWK-PSYDGGAIITH 59
G Y C+ G Y ++ P VP L S + I S +G I
Sbjct: 236 GKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVA 295
Query: 60 YIVSYRDRTEDWQSVHVDAEYREFTLTQLKCGTHYKINIKLVN--SIGESKPSKTIAAST 117
V Y + W + + L T Y+I++ L G P + T
Sbjct: 296 REVEYCTASGSWNDRQPVDS-TSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRT 354
Query: 118 KGED----------------------------------------------QTDWINIPLS 131
K D + + +S
Sbjct: 355 KCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVS 414
Query: 132 NLDEALEMPLVIENLLPATRYELTISAKNDAGS 164
E I NL P T + + N G
Sbjct: 415 WDTENSHPQHTITNLSPYTNVSVKLILMNPEGR 447
Score = 59.8 bits (144), Expect = 7e-11
Identities = 19/113 (16%), Positives = 35/113 (30%), Gaps = 14/113 (12%)
Query: 22 VTILSPPGVP-----NILLQSTTTHSISILWKPSYDGGAIITHYIVSYR---------DR 67
+ + + +P + ST I + W+ +IT Y ++Y+ D
Sbjct: 453 LIVQTDEDLPGAVPTESIQGSTFEEKIFLQWREPTQTYGVITLYEITYKAVSSFDPEIDL 512
Query: 68 TEDWQSVHVDAEYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTKGE 120
+ V F L GT Y I+ + G P+ +
Sbjct: 513 SNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPATNQFTTKISA 565
Score = 54.8 bits (131), Expect = 3e-09
Identities = 29/198 (14%), Positives = 52/198 (26%), Gaps = 58/198 (29%)
Query: 23 TILSPPGVP--NILLQSTTTHSISILWK-PSYDGG-AIITHYIVSYRDRTEDWQSVH--- 75
T + P + + + I+I W+ Y+ + V Y + + V
Sbjct: 354 TKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEV 413
Query: 76 ---VDAEYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAAST--------------- 117
+ + + T+T L T+ + + L+N G S+ + T
Sbjct: 414 SWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRK-ESQELIVQTDEDLPGAVPTESIQG 472
Query: 118 --------------------------------KGEDQTDWINIPLSNLDEALEMPLVIEN 145
+ + D N E +
Sbjct: 473 STFEEKIFLQWREPTQTYGVITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFG 532
Query: 146 LLPATRYELTISAKNDAG 163
L P T Y TI A G
Sbjct: 533 LYPGTTYSFTIRASTAKG 550
Score = 47.9 bits (113), Expect = 6e-07
Identities = 16/138 (11%), Positives = 38/138 (27%), Gaps = 43/138 (31%)
Query: 26 SPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDRTEDWQ------------- 72
S P + T ++++++ KP++ GA ++ Y + +
Sbjct: 567 SMPAYELETPLNQTDNTVTVMLKPAHSRGAPVSVYQIVVEEERPRRTKKTTEILKCYPVP 626
Query: 73 ------------------------------SVHVDAEYREFTLTQLKCGTHYKINIKLVN 102
++ + Y + T L Y+I + +
Sbjct: 627 IHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYFQAAS 686
Query: 103 SIGESKPSKTIAASTKGE 120
+ +TKG
Sbjct: 687 RANGETKIDCVQVATKGA 704
>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 119
Score = 74.0 bits (182), Expect = 1e-17
Identities = 17/107 (15%), Positives = 42/107 (39%), Gaps = 6/107 (5%)
Query: 21 QVTILSPPGVP----NILLQSTTTHSISILWKPSYDGGAIITHYIVSYR-DRTEDWQSVH 75
+ I S +P +++ ++ + + W+P + I + V + + ++++
Sbjct: 8 KPAIPSSSVLPSAPRDVVPVLVSSRFVRLSWRPPAEAKGNIQTFTVFFSREGDNRERALN 67
Query: 76 -VDAEYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTKGED 121
+ T+ LK Y + N G + S+ I +T+ E
Sbjct: 68 TTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVATQPES 114
>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 73.2 bits (180), Expect = 2e-17
Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 4/103 (3%)
Query: 22 VTILSPPGVP-NILLQSTTTHSISILWK-PSYDGGAIITHYIVSYRDR-TEDWQSVHV-D 77
T P P +++ +T I + W+ P+ D Y V Y + +
Sbjct: 12 ATTGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSH 71
Query: 78 AEYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTKGE 120
+ T+ L T Y + N G + S + T+ E
Sbjct: 72 PGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQPE 114
>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 121
Score = 72.8 bits (179), Expect = 3e-17
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Query: 22 VTILSPPGVP-NILLQSTTTHSISILWKPSYDGGAIITHYIVSYR--DRTEDWQSV--HV 76
LSPP P + + + S+ + W P +GG I + V Y+ + DW +
Sbjct: 12 HGRLSPPEAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGDWILATSAI 71
Query: 77 DAEYREFTLTQLKCGTHYKINIKLVNSIGESKPSK 111
+T L+ G YK ++ +N +GES+PS
Sbjct: 72 PPSRLSVEITGLEKGISYKFRVRALNMLGESEPSA 106
>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 124
Score = 72.8 bits (179), Expect = 4e-17
Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 11/109 (10%)
Query: 14 GKDDIYYQVTILSPPGVP----NILLQSTTTHSISILWKPSYDGGAIITHYIVSYRD--- 66
G ++ PP +P N+ + + S+++ ++P YDG I+ ++V +
Sbjct: 1 GSSGSSGTISSGVPPELPGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVV 60
Query: 67 -RTEDWQSVHVDAEY---REFTLTQLKCGTHYKINIKLVNSIGESKPSK 111
E+W +H + R + L T Y ++ VN +G S PS+
Sbjct: 61 GEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQ 109
>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A
{Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
Length = 205
Score = 74.0 bits (182), Expect = 8e-17
Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 6/101 (5%)
Query: 27 PPGVP-NILLQSTTTHSISILWKP--SYDGGAIITHYIVSYR--DRTEDWQSVHV-DAEY 80
P P N++ Q T +++ I W P + A HY VS++ W++ ++ D
Sbjct: 104 PFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQ 163
Query: 81 REFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTKGED 121
+ Y I + +N GES + GED
Sbjct: 164 NNIVIADQPTFVKYLIKVVAINDRGESNVAAEEVVGYSGED 204
Score = 72.1 bits (177), Expect = 4e-16
Identities = 29/191 (15%), Positives = 51/191 (26%), Gaps = 53/191 (27%)
Query: 24 ILSPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDRTE--DWQSVH-VDAEY 80
+ P P + + I W+ D + I HY + + W + +
Sbjct: 2 VQDVPNAPKLTGITCQADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVPNT 61
Query: 81 REFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTKGED------------------- 121
+ Q+ +Y + N IG S PS + T D
Sbjct: 62 DSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNL 121
Query: 122 ----------------------------QTDWINIPLSNLDEALEMPLVIENLLPATRYE 153
W N N+ + + +VI + +Y
Sbjct: 122 VISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENN---NIFDWRQNNIVIADQPTFVKYL 178
Query: 154 LTISAKNDAGS 164
+ + A ND G
Sbjct: 179 IKVVAINDRGE 189
>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM
related cell adhesion molecule, fibronectin type III
domain, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 127
Score = 72.0 bits (177), Expect = 9e-17
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 4/95 (4%)
Query: 21 QVTILSPPGVP-NILLQSTTTHSISILWKPSYDGGAIITHYIVSYRD---RTEDWQSVHV 76
+ P P ++ L S+ + W P D + IT +I+ Y D + W
Sbjct: 10 PAPVYDVPNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHHQTE 69
Query: 77 DAEYREFTLTQLKCGTHYKINIKLVNSIGESKPSK 111
+ + L +Y + VNSIG+S PS+
Sbjct: 70 VSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSE 104
>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 117
Score = 71.6 bits (176), Expect = 9e-17
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
Query: 21 QVTILSPPGVP-NILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDR--TEDWQSVHVD 77
+ PG P + T +S+++ W+P G + YI+ + + WQ+V
Sbjct: 9 NYDLSDLPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQTVANH 68
Query: 78 AEYREFTLTQLKCGTHYKINIKLVNSIGESKPS 110
+ +T+ L+ T Y ++ +N G S PS
Sbjct: 69 VKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPS 101
>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 116
Score = 70.4 bits (173), Expect = 2e-16
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Query: 27 PPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDR-TEDWQSVHVDAEYREFTL 85
P PN+ + + SI++ W+ G I +Y + Y ++ T+ Q V V + +T+
Sbjct: 18 PGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDKEQDVDVSS--HSYTI 75
Query: 86 TQLKCGTHYKINIKLVNSIGESKPSKTIAASTKGE 120
LK T Y + N G + +A T +
Sbjct: 76 NGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTLSD 110
>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 106
Score = 70.4 bits (173), Expect = 3e-16
Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 2/94 (2%)
Query: 26 SPPGVP-NILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDRTEDWQSVHVDAEYREFT 84
S PG N+ ST+ SI I W+P + Y + + +++ + +
Sbjct: 6 SGPGPVENLQAVSTSPTSILITWEPPAYANGPVQGYRLFCT-EVSTGKEQNIEVDGLSYK 64
Query: 85 LTQLKCGTHYKINIKLVNSIGESKPSKTIAASTK 118
L LK T Y + N G + I T
Sbjct: 65 LEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVTL 98
>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type
III domain containing protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 115
Score = 70.1 bits (172), Expect = 3e-16
Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 6/104 (5%)
Query: 22 VTILSPPGVP----NILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDRTEDWQSVHVD 77
+ +++ GVP N + + SI + W P I +Y + Y+D +
Sbjct: 9 IQVITQTGVPGQPLNFKAEPESETSILLSWTPPRSD--TIANYELVYKDGEHGEEQRITI 66
Query: 78 AEYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTKGED 121
+ L LK + Y + + G + I+A T
Sbjct: 67 EPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTMQSS 110
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A
{Homo sapiens} PDB: 1fnh_A
Length = 290
Score = 73.7 bits (181), Expect = 4e-16
Identities = 26/177 (14%), Positives = 61/177 (34%), Gaps = 38/177 (21%)
Query: 22 VTILSPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYR--DRTEDWQSVHVDAE 79
+ P ++ T S+S W P +T Y V ++T + +++ +
Sbjct: 16 FQGPAIPAPTDLKFTQVTPTSLSAQWTP---PNVQLTGYRVRVTPKEKTGPMKEINLAPD 72
Query: 80 YREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAAST---------KGEDQTD------ 124
++ L T Y++++ + S+P++ + + + D T+
Sbjct: 73 SSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLENVSPPRRARVTDATETTITIS 132
Query: 125 W-----------INIPLSNLDEALEMPL-------VIENLLPATRYELTISAKNDAG 163
W ++ +N ++ + I L P T Y++ + ND
Sbjct: 133 WRTKTETITGFQVDAVPANGQTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNA 189
Score = 69.8 bits (171), Expect = 1e-14
Identities = 34/182 (18%), Positives = 54/182 (29%), Gaps = 47/182 (25%)
Query: 22 VTILSPPGVP-NILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDRT-EDWQSVHVDAE 79
VT L P + T +I+I W+ IT + V + + +
Sbjct: 107 VTTLENVSPPRRARVTDATETTITISWRT---KTETITGFQVDAVPANGQTPIQRTIKPD 163
Query: 80 YREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAA------------------------ 115
R +T+T L+ GT YKI + +N S P A+
Sbjct: 164 VRSYTITGLQPGTDYKIYLYTLNDNARSSPVVIDASTAIDAPSNLRFLATTPNSLLVSWQ 223
Query: 116 -------------STKGEDQTDWINIPLSNLDEALEMPLVIENLLPATRYELTISAKNDA 162
G + + P + EA I L P T Y + + A +
Sbjct: 224 PPRARITGYIIKYEKPGSPPREVVPRPRPGVTEA-----TITGLEPGTEYTIYVIALKNN 278
Query: 163 GS 164
Sbjct: 279 QK 280
Score = 60.2 bits (146), Expect = 2e-11
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Query: 27 PPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYR--DRTEDWQSVHVDAEYREFT 84
N+ +TT +S+ + W+P A IT YI+ Y E T
Sbjct: 202 IDAPSNLRFLATTPNSLLVSWQPP---RARITGYIIKYEKPGSPPREVVPRPRPGVTEAT 258
Query: 85 LTQLKCGTHYKINIKLVNSIGESKPS 110
+T L+ GT Y I + + + +S+P
Sbjct: 259 ITGLEPGTEYTIYVIALKNNQKSEPL 284
>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding;
2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
PDB: 2ibb_A
Length = 214
Score = 72.5 bits (178), Expect = 4e-16
Identities = 19/98 (19%), Positives = 39/98 (39%), Gaps = 5/98 (5%)
Query: 26 SPPGVP-NILLQSTTTHSISILWK-PSYDGGAIITHYIVSYR--DRTEDWQSVHV-DAEY 80
P VP + ++ + ++ + W S +IT Y YR ++ + A
Sbjct: 114 DPMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHA 173
Query: 81 REFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTK 118
R F + L+ T Y+ ++ ++ S+ S T+
Sbjct: 174 RSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRTQ 211
Score = 60.2 bits (146), Expect = 1e-11
Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 16/106 (15%)
Query: 26 SPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYRD--RTEDWQSVH-------- 75
PP PN+ + S+ + W + G I + V YR + ++WQ+ +
Sbjct: 3 YPPTPPNVT--RLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 60
Query: 76 ----VDAEYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAAST 117
+ ++T LK Y+ I V S ++K S T A
Sbjct: 61 KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFY 106
>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 114
Score = 69.7 bits (171), Expect = 5e-16
Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 4/100 (4%)
Query: 26 SPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYR----DRTEDWQSVHVDAEYR 81
S P ++ + ++ + W+P + IT YI+ Y +DW + +
Sbjct: 10 SAPKDLTVITREGKPRAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIMETISGDRL 69
Query: 82 EFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTKGED 121
+ L T Y I+ NS G S I T
Sbjct: 70 THQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRTLKVS 109
>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2,
NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 108
Score = 69.4 bits (170), Expect = 5e-16
Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 1/95 (1%)
Query: 27 PPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDR-TEDWQSVHVDAEYREFTL 85
P VP + S T SI++ W II Y + Y ++ ++ S ++ +
Sbjct: 8 PSTVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSMARSQTNTARI 67
Query: 86 TQLKCGTHYKINIKLVNSIGESKPSKTIAASTKGE 120
L+ G Y + ++ G K S + T +
Sbjct: 68 DGLRPGMVYVVQVRARTVAGYGKFSGKMCFQTLTD 102
>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III
repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 69.3 bits (170), Expect = 6e-16
Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 6/97 (6%)
Query: 28 PGVPNILLQSTTTHSISILWK-PSYDGGAIITHYIVSYRDRTED-----WQSVHVDAEYR 81
P P+I + + + + P GG I Y +R E+ W +
Sbjct: 7 PSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEG 66
Query: 82 EFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTK 118
T+ LK T Y + + +N G + S T+
Sbjct: 67 IVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ 103
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 73.5 bits (179), Expect = 1e-15
Identities = 30/238 (12%), Positives = 61/238 (25%), Gaps = 64/238 (26%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVP-NILLQSTTTHSISILWKPSYDGGAIITHYI 61
G C ++ + + P + + + + W ++ Y+
Sbjct: 136 GVKKCCSNGCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEPVIYV 195
Query: 62 VSYR---------DRTEDWQSVHVDAEYREFTLTQLKCGTHYKINIKLVNSIGESKPSK- 111
V R D WQ+V + LT ++ Y+ + VN G +
Sbjct: 196 VQRRWNYGIHPSEDDATHWQTVAQTTD-ERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAP 254
Query: 112 -------------------TIAASTKGEDQTDWINI-----PLSNLD------------- 134
+A ST D + + I ++
Sbjct: 255 SKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDIPVHHYKVFWSWMVS 314
Query: 135 ---------------EALEMPLVIENLLPATRYELTISAKNDAGSTNKNYVFATLSVN 177
+ + +++E L P Y + + A G T +L
Sbjct: 315 SKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFT 372
Score = 60.0 bits (144), Expect = 5e-11
Identities = 15/111 (13%), Positives = 35/111 (31%), Gaps = 14/111 (12%)
Query: 26 SPPGVP------NILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDRTED--------W 71
S P P N + S + +++I+W + + HY V +
Sbjct: 265 SAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDIPVHHYKVFWSWMVSSKSLVPTKKK 324
Query: 72 QSVHVDAEYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTKGEDQ 122
+ D L +L+ Y + ++ + G+++ +
Sbjct: 325 RRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTH 375
Score = 58.8 bits (141), Expect = 1e-10
Identities = 22/157 (14%), Positives = 51/157 (32%), Gaps = 17/157 (10%)
Query: 27 PPGVPNILLQSTTTHSISILWK-PSYDGGAIITHYIVSYRDRTEDW-----------QSV 74
P + + + WK + +T + V++ + T + QS
Sbjct: 528 PENLSASFIVQDVNITGHFSWKMAKANLYQPMTGFQVTWAEVTTESRQNSLPNSIISQSQ 587
Query: 75 HVDAEYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTKGEDQTDWINIPLSNLD 134
+ +++ T+ L+ T Y++ ++++ GE P+ T + L +
Sbjct: 588 ILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEG-PATIKTFRTPELPPSSAHRSHLKHRH 646
Query: 135 EALEMPLVIENLLPATRYELTISAKNDAGSTNKNYVF 171
P P L + D+ T ++
Sbjct: 647 PHHYKPSPERYGKPIPNPLLGL----DSTRTGHHHHH 679
Score = 43.0 bits (100), Expect = 3e-05
Identities = 18/119 (15%), Positives = 34/119 (28%), Gaps = 8/119 (6%)
Query: 26 SPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYR------DRTEDWQSVHVDAE 79
+ P + + WK + D + Y V + +RT ++
Sbjct: 403 TRPLEVGAPFYQDGQLQVKVYWKKTEDPT--VNRYHVRWFPEACAHNRTTGSEASSGMTH 460
Query: 80 YREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTKGEDQTDWINIPLSNLDEALE 138
L L YK+ ++ + SK + + P+ L EA
Sbjct: 461 ENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSALKGKSHKPIGCLGEAGH 519
Score = 29.2 bits (64), Expect = 1.1
Identities = 3/23 (13%), Positives = 12/23 (52%)
Query: 142 VIENLLPATRYELTISAKNDAGS 164
++++L + +Y++T+
Sbjct: 465 ILQDLSFSCKYKVTVQPIRPKSH 487
Score = 28.4 bits (62), Expect = 1.8
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 21 QVTILSPPGVPNILLQSTTTHSISILWKPS-YDGGAIITHYIVSYRDRTEDWQSVH 75
T +P P+ +S H +KPS G I + ++ H
Sbjct: 624 IKTFRTPELPPSSAHRSHLKHRHPHHYKPSPERYGKPIPNPLLGLDSTRTGHHHHH 679
>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 114
Score = 68.7 bits (168), Expect = 1e-15
Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 7/102 (6%)
Query: 27 PPGVP-NILLQSTTTHSISILWK--PSYDGGAIITHYIVSYR----DRTEDWQSVHVDAE 79
P P + +I + W P+ + I + + YR D D++ V+ +
Sbjct: 8 PVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGD 67
Query: 80 YREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTKGED 121
+++ L+ T Y I ++ N GES+ S + TK
Sbjct: 68 RYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICETKARS 109
>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY
docking, cell adhesion, structural protein; NMR {Homo
sapiens}
Length = 201
Score = 70.8 bits (173), Expect = 1e-15
Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 4/98 (4%)
Query: 26 SPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYR--DRTEDWQSVHVDAEYREF 83
S P I + +S I W I+ YI+ +R + W+ + +
Sbjct: 1 SGPVEVFITETPSQPNSHPIQWNAPQPSH--ISKYILRWRPKNSVGRWKEATIPGHLNSY 58
Query: 84 TLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTKGED 121
T+ LK G Y+ + + G + ++ +T
Sbjct: 59 TIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTST 96
Score = 68.1 bits (166), Expect = 1e-14
Identities = 16/97 (16%), Positives = 37/97 (38%), Gaps = 5/97 (5%)
Query: 23 TILSPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYR--DRTEDWQSVHVDAEY 80
T SP + + T S + W + ++ + V Y + ++ Q + + +
Sbjct: 108 TPFSPLVATSESVTEITASSFVVSWVSA---SDTVSGFRVEYELSEEGDEPQYLDLPSTA 164
Query: 81 REFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAAST 117
+ L G Y +N+ ++ GE + + +T
Sbjct: 165 TSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 201
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein;
2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A
Length = 368
Score = 71.8 bits (176), Expect = 3e-15
Identities = 28/178 (15%), Positives = 50/178 (28%), Gaps = 48/178 (26%)
Query: 27 PPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYR--DRTEDWQSVHVDAEYREFT 84
P ++ + ++ + W P +T+++V Y ED + +
Sbjct: 95 VPPPTDLRFTNIGPDTMRVTWAPPPSI--DLTNFLVRYSPVKNEEDVAELSISPSDNAVV 152
Query: 85 LTQLKCGTHYKINIKLVNSIGESKPSKTIAA----------------------------- 115
LT L GT Y +++ V ES P +
Sbjct: 153 LTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLDSPTGIDFSDITANSFTVHWIAPRAT 212
Query: 116 ---------STKGEDQTDWINIPLSNLDEALEMPLVIENLLPATRYELTISAKNDAGS 164
+ +P S + + NL P T Y ++I A N
Sbjct: 213 ITGYRIRHHPEHFSGRPREDRVPHSRNS------ITLTNLTPGTEYVVSIVALNGREE 264
Score = 66.0 bits (161), Expect = 3e-13
Identities = 29/172 (16%), Positives = 45/172 (26%), Gaps = 37/172 (21%)
Query: 27 PPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYR--DRTEDWQSVHVDAEYREFT 84
I T +S ++ W A IT Y + + + + V T
Sbjct: 186 LDSPTGIDFSDITANSFTVHWIAP---RATITGYRIRHHPEHFSGRPREDRVPHSRNSIT 242
Query: 85 LTQLKCGTHYKINIKLVNSIGESKPSKTIAASTKG--------EDQTDWINI-------- 128
LT L GT Y ++I +N ES ++ + I
Sbjct: 243 LTNLTPGTEYVVSIVALNGREESPLLIGQQSTVSDVPRDLEVVAATPTSLLISWDAPAVT 302
Query: 129 ---------PLSNLDEALEMPL-------VIENLLPATRYELTISAKNDAGS 164
E + I L P Y +T+ A G
Sbjct: 303 VRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGD 354
Score = 65.2 bits (159), Expect = 6e-13
Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 7/111 (6%)
Query: 4 NYTC--LADNIFGKDDIYYQVTILSPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYI 61
Y +A N + + ++ + + T S+ I W + +Y
Sbjct: 251 EYVVSIVALNGREESPLLIGQQSTVSDVPRDLEVVAATPTSLLISWDA---PAVTVRYYR 307
Query: 62 VSYR--DRTEDWQSVHVDAEYREFTLTQLKCGTHYKINIKLVNSIGESKPS 110
++Y Q V T++ LK G Y I + V G+S S
Sbjct: 308 ITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPAS 358
Score = 56.0 bits (135), Expect = 8e-10
Identities = 33/176 (18%), Positives = 62/176 (35%), Gaps = 39/176 (22%)
Query: 25 LSPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYR---DRTEDWQSVHVDAEYR 81
LSPP ++ T +++ W+ S IT Y ++ + + V A+
Sbjct: 2 LSPPTNLHLEANPDTG-VLTVSWERSTTPD--ITGYRITTTPTNGQQGNSLEEVVHADQS 58
Query: 82 EFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAAST-------KGEDQTD------W--- 125
T L G Y +++ V ES P + + W
Sbjct: 59 SCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPAVPPPTDLRFTNIGPDTMRVTWAPP 118
Query: 126 --INI--------PLSNLDEALEMPL-------VIENLLPATRYELTISAKNDAGS 164
I++ P+ N ++ E+ + V+ NLLP T Y +++S+ +
Sbjct: 119 PSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHE 174
>2crz_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 110
Score = 67.4 bits (165), Expect = 4e-15
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 4/94 (4%)
Query: 26 SPPGVPNILLQSTTTHSISILWK-PSYDGGAIITHYIVSYRD-RTEDWQSVHVDAEYREF 83
P P + I + W P DGG+ I+ Y V ++ + V+ +E E
Sbjct: 10 GPCLPPRLQ-GRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSE-VEC 67
Query: 84 TLTQLKCGTHYKINIKLVNSIGESKPSKTIAAST 117
T++ L G Y ++ N +G S+ +T
Sbjct: 68 TVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITT 101
>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites,
calcium, cell adhesion molecules, cell cycle cell LINE,
conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C
3n1q_C 3n1m_C 3n1g_C 3n1p_C
Length = 102
Score = 67.0 bits (164), Expect = 4e-15
Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 7/99 (7%)
Query: 27 PPGVP-NILLQSTTTHSISILWK--PSYDGGAIITHYIVSYR----DRTEDWQSVHVDAE 79
P P ++ + I + W PS + I + + YR D D++ V+
Sbjct: 4 PITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGS 63
Query: 80 YREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTK 118
+ + L+ T Y I ++ N GES+ S + TK
Sbjct: 64 KQWHMIGHLQPETSYDIKMQCFNEGGESEFSNVMICETK 102
Score = 28.9 bits (65), Expect = 0.37
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 142 VIENLLPATRYELTISAKNDAG 163
+I +L P T Y++ + N+ G
Sbjct: 68 MIGHLQPETSYDIKMQCFNEGG 89
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 71.7 bits (175), Expect = 5e-15
Identities = 27/217 (12%), Positives = 58/217 (26%), Gaps = 61/217 (28%)
Query: 3 GNYTCLADNIFGKDD-IYYQVTILSPPGVPNILLQSTTTHSISILWK-PSYDGGAIITHY 60
G +C + F + + PP P+ L + + W P GG Y
Sbjct: 308 GATSCECEEGFFRAPQDPASMPCTRPPSAPHYLTAVGMGAKVELRWTPPQDSGGREDIVY 367
Query: 61 IVSYR------------DRTEDWQSVHVDAEYREFTLTQLKCGTHYKINIKLVNSIGESK 108
V+ + + + T++ L+ +Y ++ N +
Sbjct: 368 SVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLV 427
Query: 109 PSKTIAASTKGEDQT------------------------------------------DWI 126
S++ ++ +QT +
Sbjct: 428 TSRSFRTASVSINQTEPPKVRLEGRSTTSLSVSWSIPPPQQSRVWKYEVTYRKKGDSNSY 487
Query: 127 NIPLSNLDEALEMPLVIENLLPATRYELTISAKNDAG 163
N+ + +++L P T Y + + A G
Sbjct: 488 NVRRTEGFSV-----TLDDLAPDTTYLVQVQALTQEG 519
Score = 66.7 bits (162), Expect = 2e-13
Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 1/101 (0%)
Query: 22 VTILSPPGVP-NILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDRTEDWQSVHVDAEY 80
++ P + L+ +T S+S+ W + + Y V+YR + + E
Sbjct: 435 ASVSINQTEPPKVRLEGRSTTSLSVSWSIPPPQQSRVWKYEVTYRKKGDSNSYNVRRTEG 494
Query: 81 REFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTKGED 121
TL L T Y + ++ + G+ SK T +
Sbjct: 495 FSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHEFQTLSPE 535
>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 67.4 bits (165), Expect = 6e-15
Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 10/125 (8%)
Query: 6 TCLADNIFGKDDIYYQ-VTILSPPGVP----NILLQSTTTHSISILWK-PSYDGGAIITH 59
+ + G + + + VP IL T S+ ++W+ P+ G II
Sbjct: 2 SSGSSGRIGDGSPSHPPILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNG-IILA 60
Query: 60 YIVSYR--DRTEDWQSVH-VDAEYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAAS 116
Y +++R T + +V + R++T T LK + Y I G + ++ + +
Sbjct: 61 YQITHRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVT 120
Query: 117 TKGED 121
T+
Sbjct: 121 TEKRS 125
>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III
domain, oncofetal splice VARI extra-domain B, EIIIB,
ED-B, angiogenesis, integrin; 2.40A {Homo sapiens}
Length = 375
Score = 71.0 bits (174), Expect = 7e-15
Identities = 31/172 (18%), Positives = 53/172 (30%), Gaps = 36/172 (20%)
Query: 27 PPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYR--DRTEDWQSVHVDAEYREFT 84
P ++ + ++ + W P +T+++V Y ED + +
Sbjct: 187 VPPPTDLRFTNIGPDTMRVTWAP--PPSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVV 244
Query: 85 LTQLKCGTHYKINIKLVNSIGESKPSKTIAAST-------KGEDQTD------WI----- 126
LT L GT Y +++ V ES P + + D T WI
Sbjct: 245 LTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLDSPTGIDFSDITANSFTVHWIAPRAT 304
Query: 127 --------------NIPLSNLDEALEMPLVIENLLPATRYELTISAKNDAGS 164
P + + + NL P T Y ++I A N
Sbjct: 305 ITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREE 356
Score = 68.3 bits (167), Expect = 5e-14
Identities = 32/179 (17%), Positives = 59/179 (32%), Gaps = 49/179 (27%)
Query: 27 PPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYR--DRTEDWQSVHVDAEYREFT 84
P + ++ T SI + W P + I Y ++ VD+ +T
Sbjct: 96 VPQLTDLSFVDITDSSIGLRWTP--LNSSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYT 153
Query: 85 LTQLKCGTHYKINIKLVNSIGESKPSKTIAA----------------------------- 115
+T L+ G Y I++ + + GES P+
Sbjct: 154 VTGLEPGIDYDISVITLINGGESAPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWAPPPSI 213
Query: 116 ----------STKGEDQTDWINIPLSNLDEALEMPLVIENLLPATRYELTISAKNDAGS 164
K E+ ++I S+ +V+ NLLP T Y +++S+ +
Sbjct: 214 DLTNFLVRYSPVKNEEDVAELSISPSDNA------VVLTNLLPGTEYVVSVSSVYEQHE 266
Score = 63.3 bits (154), Expect = 3e-12
Identities = 20/91 (21%), Positives = 31/91 (34%), Gaps = 5/91 (5%)
Query: 27 PPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYR--DRTEDWQSVHVDAEYREFT 84
I T +S ++ W A IT Y + + + + V T
Sbjct: 278 LDSPTGIDFSDITANSFTVHWIA---PRATITGYRIRHHPEHFSGRPREDRVPHSRNSIT 334
Query: 85 LTQLKCGTHYKINIKLVNSIGESKPSKTIAA 115
LT L GT Y ++I +N ES +
Sbjct: 335 LTNLTPGTEYVVSIVALNGREESPLLIGQQS 365
Score = 55.2 bits (133), Expect = 2e-09
Identities = 29/176 (16%), Positives = 53/176 (30%), Gaps = 39/176 (22%)
Query: 25 LSPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYRD---RTEDWQSVHVDAEYR 81
LSPP ++ T +++ W+ S IT Y ++ + + V A+
Sbjct: 3 LSPPTNLHLEANPDTG-VLTVSWERSTTPD--ITGYRITTTPTNGQQGNSLEEVVHADQS 59
Query: 82 EFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAAST-------KGEDQTD------WINI 128
T L G Y +++ V ES P D TD W +
Sbjct: 60 SCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPEVPQLTDLSFVDITDSSIGLRWTPL 119
Query: 129 PLSNLD--------------------EALEMPLVIENLLPATRYELTISAKNDAGS 164
S + ++ + L P Y++++ + G
Sbjct: 120 NSSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGE 175
>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW-
type protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 110
Score = 66.2 bits (162), Expect = 9e-15
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 26 SPPGVPNILLQSTTTHSISILWK-PSYDGGAIITHYIVSYRDR-TEDWQSVHVD-AEYRE 82
SPP + + S T ++++ W+ P + G A + Y++ Y TEDW + D + +
Sbjct: 9 SPPTLLTVD--SVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTK 66
Query: 83 FTLTQLKCGTHYKINIKLVNSIGESKPSKT 112
FT+T L + +K VN+ G S+P
Sbjct: 67 FTITGLPTDAKIFVRVKAVNAAGASEPKYY 96
>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK
protein, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 120
Score = 66.1 bits (161), Expect = 1e-14
Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 9/108 (8%)
Query: 20 YQVTILSPPGVPNILLQSTTTHSISILWK-PSYDGGAIITHYIVSYRDRTED-----WQS 73
++V LS P P + T HSI + W + + + ED +
Sbjct: 11 HKVVPLSKPHPPVVG--KVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGV 68
Query: 74 VHVDAEYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTKGED 121
++ + L+ T YK +K+ + GE + S ++ +T E
Sbjct: 69 IY-TGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRES 115
>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain,
fibron type III, cell adhesion; 1.80A {Homo sapiens}
PDB: 1x5k_A
Length = 211
Score = 68.3 bits (167), Expect = 1e-14
Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 4/97 (4%)
Query: 26 SPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYR----DRTEDWQSVHVDAEYR 81
SPP ++ + +I + W+P + IT YI+ Y DW V
Sbjct: 107 SPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRL 166
Query: 82 EFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTK 118
+ +L T Y I+ NS G S+ + T
Sbjct: 167 THQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTP 203
Score = 67.5 bits (165), Expect = 2e-14
Identities = 28/187 (14%), Positives = 51/187 (27%), Gaps = 50/187 (26%)
Query: 27 PPGVP-NILLQSTTTHSISILWK----PSYDGGAIITHYIVSYRDR-TEDWQSVHVDAEY 80
P P + + +I I W P + +Y V ++ + + + +A
Sbjct: 4 PMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATT 63
Query: 81 REFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTKGE-------------------- 120
+ +T LK T Y+ ++ + S S T +T
Sbjct: 64 LSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKT 123
Query: 121 ------------------------DQTDWINIPLSNLDEALEMPLVIENLLPATRYELTI 156
D I+ + + I+ L T Y I
Sbjct: 124 IIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKI 183
Query: 157 SAKNDAG 163
A+N G
Sbjct: 184 QARNSKG 190
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 70.4 bits (172), Expect = 1e-14
Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 2/94 (2%)
Query: 27 PPGVPNILLQSTTTHSISILWK--PSYDGGAIITHYIVSYRDRTEDWQSVHVDAEYREFT 84
P P + + + + W P I +Y + YR + +V+VD+ + E+T
Sbjct: 496 PSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAVNVDSSHTEYT 555
Query: 85 LTQLKCGTHYKINIKLVNSIGESKPSKTIAASTK 118
L+ L T Y + + G + + K
Sbjct: 556 LSSLTSDTLYMVRMAAYTDEGGKDGPEFTFTTPK 589
Score = 64.3 bits (156), Expect = 1e-12
Identities = 36/214 (16%), Positives = 63/214 (29%), Gaps = 53/214 (24%)
Query: 4 NYTCLADNIFGK---DDIYYQVT---ILSPPGVPNILLQSTTTHSISILWKPSYDGGAII 57
A+N GK D I + +PP +++ + + + W II
Sbjct: 172 EVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVII 231
Query: 58 THYIVSYRDR-TEDWQSV---HVDAEYREFTLTQLKCGTHYKINIKLVNSIGE---SKPS 110
Y + YR + W + + FT+ LK T Y I+ + G+ S S
Sbjct: 232 LKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWS 291
Query: 111 KTIAASTKGE----DQTDWINIPLSNLDEALEMPL------------------------- 141
+ + T + + W I S+ + L
Sbjct: 292 EEASGITYEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWK 351
Query: 142 -----------VIENLLPATRYELTISAKNDAGS 164
+ L RY T++ +N G
Sbjct: 352 SHLQNYTVNATKLTVNLTNDRYLATLTVRNLVGK 385
Score = 63.5 bits (154), Expect = 3e-12
Identities = 26/210 (12%), Positives = 54/210 (25%), Gaps = 51/210 (24%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILS--PPGVP-NILLQSTTTHSISILWKPSYDGGAIITH 59
TC + Y +TI+S PP P N+ + W + + T+
Sbjct: 76 IQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCIVNEGKKMRCEWDGGRETH-LETN 134
Query: 60 YIVSYRDRTEDWQSVHV--DAEYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAAST 117
+ + T + D + ++ ++ N++G+
Sbjct: 135 FTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPV 194
Query: 118 --------------------------------------------KGEDQTDWINIPLSNL 133
+ +D + W IP +
Sbjct: 195 YKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDT 254
Query: 134 DEALEMPLVIENLLPATRYELTISAKNDAG 163
+ +++L P T Y I + G
Sbjct: 255 A-STRSSFTVQDLKPFTEYVFRIRCMKEDG 283
Score = 58.9 bits (142), Expect = 1e-10
Identities = 22/189 (11%), Positives = 43/189 (22%), Gaps = 40/189 (21%)
Query: 18 IYYQVTILSPPGVPNILLQSTTTHSISILWK-PSYDGGAIITHYIVSYRDRTEDWQSVHV 76
+ L + + + W P I + V
Sbjct: 391 LTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKKYILEWCVLSDKAPCITDWQQE 450
Query: 77 DAE-YREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTKG----------EDQTD- 124
D +R + L Y I + V + G P A + +
Sbjct: 451 DGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIKAYLKQAPPSKGPTVRTKKVGKN 510
Query: 125 -----WINIPLSNLDEAL----------------------EMPLVIENLLPATRYELTIS 157
W +P+ + + + +L T Y + ++
Sbjct: 511 EAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAVNVDSSHTEYTLSSLTSDTLYMVRMA 570
Query: 158 AKNDAGSTN 166
A D G +
Sbjct: 571 AYTDEGGKD 579
Score = 57.7 bits (139), Expect = 3e-10
Identities = 25/183 (13%), Positives = 46/183 (25%), Gaps = 54/183 (29%)
Query: 27 PPGVPNILLQSTTTHSISILWK--PSYDGGAIITHYIVSYRDRTEDWQSVHVDAEYREFT 84
+ ++ ++WK P ++ I Y V+ Q+ V+A
Sbjct: 308 SFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNYTVNATKLTVN 367
Query: 85 LTQLKCGTHYKINIKLVNSIGESKPSKTIAAST--------------------------- 117
LT Y + + N +G+S + +
Sbjct: 368 LT----NDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTP 423
Query: 118 ----------------KGEDQTDWINIPLSNLDEALEMPLVIENLLPATRYELTISAKND 161
K TDW + L NL + Y +T++
Sbjct: 424 RESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYL-----RGNLAESKCYLITVTPVYA 478
Query: 162 AGS 164
G
Sbjct: 479 DGP 481
>3k2m_C Monobody HA4; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A
1fna_A
Length = 101
Score = 65.6 bits (160), Expect = 2e-14
Identities = 16/99 (16%), Positives = 30/99 (30%), Gaps = 5/99 (5%)
Query: 23 TILSPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYR--DRTEDWQSVHVDAEY 80
++ S P + + + T S+ I W ++ +Y ++Y Q V
Sbjct: 3 SVSSVPT--KLEVVAATPTSLLISWDAPMSSSSV-YYYRITYGETGGNSPVQEFTVPYSS 59
Query: 81 REFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTKG 119
T++ L G Y I + S
Sbjct: 60 STATISGLSPGVDYTITVYAWGEDSAGYMFMYSPISINY 98
>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 106
Score = 65.4 bits (160), Expect = 2e-14
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
Query: 26 SPPGVP-NILLQSTTTHSISILWKPSYDGGAIITHYIVSYRD-RTEDWQSVHVDAEYREF 83
S P P ++++ TT S+++ W +T+Y + YR TE +
Sbjct: 6 SGPKPPIDLVVTETTATSVTLTWDS--GNSEPVTYYGIQYRAAGTEGPFQEVDGVATTRY 63
Query: 84 TLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTKGED 121
++ L + Y + VNSIG PS+ + A T +
Sbjct: 64 SIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQS 101
>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein
binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP:
b.1.2.1
Length = 115
Score = 65.7 bits (160), Expect = 2e-14
Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 16/101 (15%)
Query: 26 SPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYRD--RTEDWQSVH-------- 75
PP PN+ + S+ + W + G I + V YR + ++WQ+ +
Sbjct: 4 YPPTPPNVT--RLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 61
Query: 76 ----VDAEYREFTLTQLKCGTHYKINIKLVNSIGESKPSKT 112
+ ++T LK Y+ I V S ++K S T
Sbjct: 62 KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNT 102
>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer,
neovascularization, cell adhesion, protein binding,
oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A
Length = 203
Score = 67.5 bits (165), Expect = 2e-14
Identities = 33/185 (17%), Positives = 61/185 (32%), Gaps = 49/185 (26%)
Query: 21 QVTILSPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYR--DRTEDWQSVHVDA 78
+ + + P ++ T SI + W P + I Y ++ VD+
Sbjct: 17 RGSHMEVPQPTDLSFVDITDSSIGLRWTPL--NSSTIIGYRITVVAAGEGIPIFEDFVDS 74
Query: 79 EYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAA----------------------- 115
+T+T L+ G Y I++ V + GES P+
Sbjct: 75 SVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLTQQTAVPPPTDLRFTNIGPDTMRVTW 134
Query: 116 ----------------STKGEDQTDWINIPLSNLDEALEMPLVIENLLPATRYELTISAK 159
K E+ ++I S+ +V+ NLLP T Y +++S+
Sbjct: 135 APPPSIDLTNFLVRYSPVKNEEDVAELSISPSDNA------VVLTNLLPGTEYVVSVSSV 188
Query: 160 NDAGS 164
+
Sbjct: 189 YEQHE 193
Score = 65.6 bits (160), Expect = 1e-13
Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 5/93 (5%)
Query: 27 PPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYR--DRTEDWQSVHVDAEYREFT 84
P ++ + ++ + W P +T+++V Y ED + +
Sbjct: 114 VPPPTDLRFTNIGPDTMRVTWAPPPSI--DLTNFLVRYSPVKNEEDVAELSISPSDNAVV 171
Query: 85 LTQLKCGTHYKINIKLVNSIGESKPSKTIAAST 117
LT L GT Y +++ V ES P T
Sbjct: 172 LTNLLPGTEYVVSVSSVYEQHESTPL-RGRQKT 203
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin
type III domain, alternative cell membrane, disulfide
bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Length = 290
Score = 68.3 bits (167), Expect = 3e-14
Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 2/94 (2%)
Query: 27 PPGVPNILLQSTTTHSISILWKP--SYDGGAIITHYIVSYRDRTEDWQSVHVDAEYREFT 84
P P + + + + W I +Y + YR + +V+VD+ + E+T
Sbjct: 197 PSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAVNVDSSHTEYT 256
Query: 85 LTQLKCGTHYKINIKLVNSIGESKPSKTIAASTK 118
L+ L T Y + + G + + K
Sbjct: 257 LSSLTSDTLYMVRMAAYTDEGGKDGPEFTFTTPK 290
Score = 61.4 bits (149), Expect = 8e-12
Identities = 27/185 (14%), Positives = 48/185 (25%), Gaps = 56/185 (30%)
Query: 26 SPPGVPNILLQSTTT--HSISILWKP--SYDGGAIITHYIVSYRDRTEDWQSVHVDAEYR 81
P + S T ++ ++WK ++ I Y V+ Q+ V+A
Sbjct: 6 KAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNYTVNATKL 65
Query: 82 EFTLTQLKCGTHYKINIKLVNSIGESKPSKTIA--------------------------- 114
LT Y + + N +G+S +
Sbjct: 66 TVNLT----NDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEW 121
Query: 115 ----------------ASTKGEDQTDWINIPLSNLDEALEMPLVIENLLPATRYELTISA 158
S K TDW + + NL + Y +T++
Sbjct: 122 TTPRESVKKYILEWCVLSDKAPCITDWQQEDGTVHRT-----YLRGNLAESKCYLITVTP 176
Query: 159 KNDAG 163
G
Sbjct: 177 VYADG 181
Score = 52.5 bits (126), Expect = 1e-08
Identities = 25/193 (12%), Positives = 48/193 (24%), Gaps = 49/193 (25%)
Query: 27 PPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDR------TEDWQSVHVDAEY 80
L + + + W + + YI+ + DWQ
Sbjct: 101 ATHPVMDLKAFPKDNMLWVEWTTPRES---VKKYILEWCVLSDKAPCITDWQQEDGTVH- 156
Query: 81 REFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAAST----------KGEDQTD------ 124
R + L Y I + V + G P A + +
Sbjct: 157 RTYLRGNLAESKCYLITVTPVYADGPGSPESIKAYLKQAPPSKGPTVRTKKVGKNEAVLE 216
Query: 125 WINIPLSNL---------------DEALEMPL-------VIENLLPATRYELTISAKNDA 162
W +P+ + + + +L T Y + ++A D
Sbjct: 217 WDQLPVDVQNGFIRNYTIFYRTIIGNETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDE 276
Query: 163 GSTNK-NYVFATL 174
G + + F T
Sbjct: 277 GGKDGPEFTFTTP 289
Score = 26.7 bits (59), Expect = 4.6
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 143 IENLLPATRYELTISAKNDAGS 164
+ L RY T++ +N G
Sbjct: 65 LTVNLTNDRYLATLTVRNLVGK 86
>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design,
S de novo protein; HET: DIO; 1.00A {Synthetic}
Length = 98
Score = 64.4 bits (157), Expect = 4e-14
Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 7/94 (7%)
Query: 24 ILSPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYR--DRTEDWQSVHVDAEYR 81
+L P ++ + + T SI++ W P A IT Y ++Y + + + + V
Sbjct: 1 MLDAPT--DLQVTNVTDTSITVSWTP---PSATITGYRITYTPSNGPGEPKELTVPPSST 55
Query: 82 EFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAA 115
T+T L G Y +++ + ES P
Sbjct: 56 SVTITGLTPGVEYVVSVYALKDNQESPPLVGTQT 89
Score = 28.9 bits (65), Expect = 0.34
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 142 VIENLLPATRYELTISAKNDAGS 164
I L P Y +++ A D
Sbjct: 58 TITGLTPGVEYVVSVYALKDNQE 80
>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 64.0 bits (156), Expect = 6e-14
Identities = 13/92 (14%), Positives = 27/92 (29%), Gaps = 5/92 (5%)
Query: 23 TILSPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDRTEDWQSVHVDAEYRE 82
+ L P ++ + T + + W Y++S+ Q + +
Sbjct: 6 SGLEAPR--DLEAKEVTPRTALLTWTEPP---VRPAGYLLSFHTPGGQTQEILLPGGITS 60
Query: 83 FTLTQLKCGTHYKINIKLVNSIGESKPSKTIA 114
L L T Y ++ + P T
Sbjct: 61 HQLLGLFPSTSYNARLQAMWGQSLLPPVSTSF 92
Score = 28.2 bits (63), Expect = 0.72
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 142 VIENLLPATRYELTISAKNDAGST 165
+ L P+T Y + A
Sbjct: 62 QLLGLFPSTSYNARLQAMWGQSLL 85
>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 119
Score = 63.6 bits (155), Expect = 1e-13
Identities = 20/102 (19%), Positives = 43/102 (42%), Gaps = 6/102 (5%)
Query: 22 VTILSPPGVP----NILLQSTTTHSISILWKPSYDGGAIITHYIVSYR--DRTEDWQSVH 75
+ + VP ++ S+ + W+ + I+T Y +S+ +RT + +
Sbjct: 9 QLVRTHEDVPGPVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWEEYNRTNTRVTHY 68
Query: 76 VDAEYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAAST 117
+ E+ +T L T Y I + + S G+ + S + +S
Sbjct: 69 LPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSASTISSG 110
>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type
III domain containing protein, cytoskeleton, muscle
contraction; NMR {Mus musculus} SCOP: b.1.2.1
Length = 111
Score = 63.1 bits (154), Expect = 1e-13
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 5/90 (5%)
Query: 26 SPPGVPNILLQSTTTHSISILWK-PSYDGGAIITHYIVSYRDR-TEDWQSVHVD-AEYRE 82
S P + T + ++ W+ P G I Y+V Y +E+W + + E
Sbjct: 10 SAPQHLTVE--DVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCG 67
Query: 83 FTLTQLKCGTHYKINIKLVNSIGESKPSKT 112
FT+ L G + VN G S+P+
Sbjct: 68 FTVKDLPTGARILFRVVGVNIAGRSEPATL 97
>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase
receptor HTK, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 109
Score = 63.3 bits (154), Expect = 1e-13
Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 2/97 (2%)
Query: 27 PPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDRT--EDWQSVHVDAEYREFT 84
PP V +I + ++ S+S+ W + Y V Y ++ +
Sbjct: 8 PPAVSDIRVTRSSPSSLSLAWAVPRAPSGAVLDYEVKYHEKGAEGPSSVRFLKTSENRAE 67
Query: 85 LTQLKCGTHYKINIKLVNSIGESKPSKTIAASTKGED 121
L LK G Y + ++ + G + + T+ +
Sbjct: 68 LRGLKRGASYLVQVRARSEAGYGPFGQEHHSQTQLDS 104
Score = 28.6 bits (64), Expect = 0.58
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 141 LVIENLLPATRYELTISAKNDAG 163
+ L Y + + A+++AG
Sbjct: 66 AELRGLKRGASYLVQVRARSEAG 88
>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 111
Score = 62.8 bits (153), Expect = 2e-13
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
Query: 27 PPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDRTEDWQSVH-VDAEYREFTL 85
P V I + S+S+LW+ II Y + Y ++ ++ QS + A T+
Sbjct: 11 PSQVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQSYSTLKAVTTRATV 70
Query: 86 TQLKCGTHYKINIKLVNSIGESKPSKTIAASTKGEDQ 122
+ LK GT Y ++ S G + S+ + T
Sbjct: 71 SGLKPGTRYVFQVRARTSAGCGRFSQAMEVETGKPSG 107
Score = 27.7 bits (62), Expect = 1.1
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 142 VIENLLPATRYELTISAKNDAG 163
+ L P TRY + A+ AG
Sbjct: 69 TVSGLKPGTRYVFQVRARTSAG 90
>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 105
Score = 62.5 bits (152), Expect = 2e-13
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 6/96 (6%)
Query: 23 TILSPPGVP-NILLQSTTTHSISILWKPSYDGGAIITHYIVSYR--DRTEDWQSVHVDAE 79
+ S P N+ L S T S+ + W P + HY ++Y +SV V
Sbjct: 3 SGSSGRSPPSNLALASETPDSLQVSWTPPLG---RVLHYWLTYAPASGLGPEKSVSVPGA 59
Query: 80 YREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAA 115
TL L+ T Y++ + + + G S+
Sbjct: 60 RSHVTLPDLQAATKYRVLVSAIYAAGRSEAVSATGQ 95
Score = 30.9 bits (70), Expect = 0.096
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 142 VIENLLPATRYELTISAKNDAGS 164
+ +L AT+Y + +SA AG
Sbjct: 64 TLPDLQAATKYRVLVSAIYAAGR 86
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de
novo; 2.50A {Synthetic}
Length = 98
Score = 62.5 bits (152), Expect = 2e-13
Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 28 PGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYR--DRTEDWQSVHVDAEYREFTL 85
P N+++ T S+ + W +++ Y+ ++ + ++ V R + L
Sbjct: 3 PAPKNLVVSEVTEDSLRLSWTAPDAA---FDSFMIQYQESEKVGEAINLTVPGSERSYDL 59
Query: 86 TQLKCGTHYKINIKLVNSIGESKPSKTIAASTKGE 120
T LK GT Y ++I V S P + +T G
Sbjct: 60 TGLKPGTEYTVSIYGVKGGHRSNPL-SAEFTTGGH 93
Score = 28.2 bits (63), Expect = 0.58
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 142 VIENLLPATRYELTISAKNDAGSTNKNYVFAT 173
+ L P T Y ++I +N T
Sbjct: 58 DLTGLKPGTEYTVSIYGVKGGHRSNPLSAEFT 89
>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related
receptor containing LDLR class A repeats, sorla; NMR
{Homo sapiens}
Length = 108
Score = 62.5 bits (152), Expect = 2e-13
Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 3/94 (3%)
Query: 26 SPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDR-TEDWQSVHVDAEYREFT 84
P + L I W P +I YIV Y ++ W S + +
Sbjct: 9 DAPRNLQLSLPREAEGVIVGHWAPPIHTHGLIREYIVEYSRSGSKMWASQRAASNF--TE 66
Query: 85 LTQLKCGTHYKINIKLVNSIGESKPSKTIAASTK 118
+ L T Y + + V S G S + + +T
Sbjct: 67 IKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTI 100
>3t04_D Monobody 7C12; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
2.10A {Homo sapiens}
Length = 103
Score = 62.1 bits (151), Expect = 3e-13
Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 3/88 (3%)
Query: 26 SPPGVP-NILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDRTED--WQSVHVDAEYRE 82
S VP + + T S+ I W Y + +Y ++Y + D Q V Y
Sbjct: 6 SVSSVPTKLEVVDATPTSLKISWDAYYSSWQNVKYYRITYGETGGDSPVQEFTVPGYYST 65
Query: 83 FTLTQLKCGTHYKINIKLVNSIGESKPS 110
T++ LK G Y I + ++
Sbjct: 66 ATISGLKPGVDYTITVYAYDTFFPGYEP 93
Score = 30.1 bits (68), Expect = 0.17
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 142 VIENLLPATRYELTISAKNDAG 163
I L P Y +T+ A +
Sbjct: 67 TISGLKPGVDYTITVYAYDTFF 88
>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 124
Score = 62.7 bits (153), Expect = 3e-13
Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 10/108 (9%)
Query: 22 VTILSPPGVP-----NILLQSTTTHSISILWKP---SYDGGAIITHYIVSYRDRTEDWQS 73
+T+++ VP N+ L+ + SI + W P G IT Y + +R T +
Sbjct: 19 ITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNG-FITGYKIRHRKTTRRGEM 77
Query: 74 VHVDAEYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTKGED 121
++ + T L+ G+ Y + + G PS A T E+
Sbjct: 78 ETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAETP-EN 124
Score = 28.8 bits (65), Expect = 0.52
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 141 LVIENLLPATRYELTISAKNDAGS 164
+ L ++Y +SA G+
Sbjct: 87 YLFTGLEKGSQYSFQVSAMTVNGT 110
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular
matrix, adhesion, fusion protein, structural protein;
2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1
Length = 186
Score = 64.0 bits (156), Expect = 3e-13
Identities = 23/169 (13%), Positives = 51/169 (30%), Gaps = 34/169 (20%)
Query: 27 PPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDRTEDWQSVHVDAEYREFTLT 86
++ + T ++S+ W+ A Y ++Y + + + + F L
Sbjct: 7 LDNPKDLEVSDPTETTLSLRWRRP---VAKFDRYRLTYVSPSGKKNEMEIPVDSTSFILR 63
Query: 87 QLKCGTHYKINIKLVNSIGESKPSKTIAAST-------KGEDQTD------W-------- 125
L GT Y I++ +SKP+ ++ D T+ W
Sbjct: 64 GLDAGTEYTISLVAEKGRHKSKPTTIKGSTVVGSPKGISFSDITENSATVSWTPPRSRVD 123
Query: 126 ---INIPLSNLDEALEMPL-------VIENLLPATRYELTISAKNDAGS 164
++ + + + L+P Y + I +
Sbjct: 124 SYRVSYVPITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEE 172
Score = 62.8 bits (153), Expect = 1e-12
Identities = 26/95 (27%), Positives = 36/95 (37%), Gaps = 6/95 (6%)
Query: 21 QVTILSPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDRTEDW-QSVHVDAE 79
T++ P I T +S ++ W P + + Y VSY T V VD
Sbjct: 91 GSTVVGSPK--GISFSDITENSATVSWTPPR---SRVDSYRVSYVPITGGTPNVVTVDGS 145
Query: 80 YREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIA 114
L +L G Y +NI V ES+P I
Sbjct: 146 KTRTKLVKLVPGVDYNVNIISVKGFEESEPISGIL 180
>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR
{Homo sapiens} PDB: 2h45_A
Length = 95
Score = 61.8 bits (150), Expect = 4e-13
Identities = 15/94 (15%), Positives = 36/94 (38%), Gaps = 5/94 (5%)
Query: 26 SPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYR--DRTEDWQSVHVDAEYREF 83
S + + T S + W + D ++ + V Y + ++ Q + + +
Sbjct: 5 SHLVATSESVTEITASSFVVSWVSASDT---VSGFRVEYELSEEGDEPQYLDLPSTATSV 61
Query: 84 TLTQLKCGTHYKINIKLVNSIGESKPSKTIAAST 117
+ L G Y +N+ ++ GE + + +T
Sbjct: 62 NIPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 95
Score = 28.6 bits (64), Expect = 0.52
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 142 VIENLLPATRYELTISAKNDAGS 164
I +LLP +Y + + ++ G
Sbjct: 62 NIPDLLPGRKYIVNVYQISEDGE 84
>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 118
Score = 62.0 bits (151), Expect = 5e-13
Identities = 10/95 (10%), Positives = 30/95 (31%), Gaps = 4/95 (4%)
Query: 22 VTILSPPGVP-NILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDR-TEDWQSVHV-DA 78
P P ++ + S+ + W+ + Y V Y+ + +++ +
Sbjct: 12 RLTAGVPDTPTRLVFSALGPTSLRVSWQEPRCER-PLQGYSVEYQLLNGGELHRLNIPNP 70
Query: 79 EYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTI 113
+ L Y ++ + G + + +
Sbjct: 71 AQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGV 105
>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins,
protein-protein interactions, C-type lectin domain;
2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
Length = 283
Score = 64.8 bits (158), Expect = 5e-13
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 27 PPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDRTEDWQSVHVDAEYREFTLT 86
++++ +++ SIS++W + I HY +++ + V V + +TLT
Sbjct: 197 LDSPRDLMVTASSETSISLIWTKA---SGPIDHYRITFTPSSGISSEVTVPRDRTSYTLT 253
Query: 87 QLKCGTHYKINIKLVNSIGESKPSKTIAAST 117
L+ G Y I+I +S S T+ A T
Sbjct: 254 DLEPGAEYIISITAERGRQQSLES-TVDAFT 283
Score = 59.1 bits (143), Expect = 6e-11
Identities = 37/188 (19%), Positives = 66/188 (35%), Gaps = 41/188 (21%)
Query: 21 QVTILSPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYR----DRTEDWQSVHV 76
T + P N+ + S T S+ + W S A Y V Y ++ +
Sbjct: 101 FTTEIDAP--KNLRVGSRTATSLDLEWDNSE---AEAQEYKVVYSTLAGEQYHEVLVPKG 155
Query: 77 DAEYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAAST--------KGEDQT-DWIN 127
+ TLT L GT Y + I V + +S P+ T+ A T + I+
Sbjct: 156 IGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPA-TMNARTELDSPRDLMVTASSETSIS 214
Query: 128 I-----------------PLSNLDEALEMP-----LVIENLLPATRYELTISAKNDAGST 165
+ P S + + +P + +L P Y ++I+A+ +
Sbjct: 215 LIWTKASGPIDHYRITFTPSSGISSEVTVPRDRTSYTLTDLEPGAEYIISITAERGRQQS 274
Query: 166 NKNYVFAT 173
++ V A
Sbjct: 275 LESTVDAF 282
Score = 58.3 bits (141), Expect = 1e-10
Identities = 26/183 (14%), Positives = 56/183 (30%), Gaps = 47/183 (25%)
Query: 21 QVTILSPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYR--DRTEDWQSVHVDA 78
+ ++ P IL++ + + W P + ++ Y + +
Sbjct: 11 GIPVIDGPT--QILVRDVSDTVAFVEWTPPRAK---VDFILLKYGLVGGEGGKTTFRLQP 65
Query: 79 EYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAA----------------------- 115
++++ L+ G+ Y+++I V ES S T
Sbjct: 66 PLSQYSVQALRPGSRYEVSISAVRGTNESDASSTQFTTEIDAPKNLRVGSRTATSLDLEW 125
Query: 116 --------------STKGEDQTDWINIPLSNLDEALEMPLVIENLLPATRYELTISAKND 161
ST +Q + +P + +L+P T Y + ISA +
Sbjct: 126 DNSEAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTK---TTLTDLVPGTEYGVGISAVMN 182
Query: 162 AGS 164
+
Sbjct: 183 SKQ 185
>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell
adhesion, coiled coil, EGF-like domain, extracellular
matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A
1ten_A
Length = 104
Score = 60.9 bits (148), Expect = 8e-13
Identities = 17/92 (18%), Positives = 37/92 (40%), Gaps = 7/92 (7%)
Query: 25 LSPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYR--DRTEDWQSVHVDAEYRE 82
L P I ++ T + I W P + + ++Y D D ++ + + +
Sbjct: 3 LDAPS--QIEVKDVTDTTALITWMPP---SQPVDGFELTYGIKDVPGDRTTIDLTEDENQ 57
Query: 83 FTLTQLKCGTHYKINIKLVNSIGESKPSKTIA 114
+++ LK T Y++++ S P+K
Sbjct: 58 YSIGNLKPDTEYEVSLISRRGDMSSNPAKETF 89
Score = 30.1 bits (68), Expect = 0.14
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 142 VIENLLPATRYELTISAKNDAGS 164
I NL P T YE+++ ++ S
Sbjct: 59 SIGNLKPDTEYEVSLISRRGDMS 81
>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 132
Score = 61.6 bits (150), Expect = 1e-12
Identities = 27/110 (24%), Positives = 41/110 (37%), Gaps = 11/110 (10%)
Query: 22 VTILSPPGVP-----NILLQSTTTHSISILWKP---SYDGGAIITHYIVSYR--DRTEDW 71
V + + VP N+ L+ + SI I W+P + G IT Y + YR R D
Sbjct: 9 VAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNG-QITGYKIRYRKASRKSDV 67
Query: 72 QSVHVDAEYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTKGED 121
V + L GT Y + + G + ++A T D
Sbjct: 68 TETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFESD 117
Score = 29.6 bits (67), Expect = 0.30
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 141 LVIENLLPATRYELTISAKNDAG 163
+IE L T Y ++A G
Sbjct: 79 QLIEGLDRGTEYNFRVAALTING 101
>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens}
SCOP: b.1.2.1
Length = 112
Score = 60.4 bits (147), Expect = 2e-12
Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 9/102 (8%)
Query: 26 SPPGVPNILLQSTTTHSISILWK-PSYDGGAIITHYIVSYRDR-TEDWQSVHVD-AEYRE 82
PPG P L + T H++++ W P Y GG IT YIV RD W + E
Sbjct: 12 DPPGKPVPL--NITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENE 69
Query: 83 FTLTQLKCGTHYKINIKLVNSIGE----SKPSKTIAASTKGE 120
FT++ L Y+ + N+ G S+PS I E
Sbjct: 70 FTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRDDVE 111
>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 60.4 bits (147), Expect = 2e-12
Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 10/105 (9%)
Query: 22 VTILSPPGVP-----NILLQSTTTHSISILWKPSYDGGAIITHYIVSYR---DRTEDWQS 73
I S P + ++ ++ IS+ W+ + I+ Y + Y D+ E
Sbjct: 9 AVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHVLEK--IVESYQIRYWAAHDKEEAANR 66
Query: 74 VHVDAEYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTK 118
V V ++ L L T Y I + NS G PS I A TK
Sbjct: 67 VQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAFTK 111
Score = 28.9 bits (65), Expect = 0.49
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 142 VIENLLPATRYELTISAKNDAG 163
+ENLLP T+Y + + A N AG
Sbjct: 77 RLENLLPDTQYFIEVGACNSAG 98
>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma,
epidermolysis bullosa, alternative splicing, disease
mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo
sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A
Length = 234
Score = 62.5 bits (152), Expect = 3e-12
Identities = 31/183 (16%), Positives = 53/183 (28%), Gaps = 49/183 (26%)
Query: 27 PPGVP-NILLQSTTTHSISILWKPSYDGGAIITHYIVSYR-DRTEDWQSVHVDAEYREFT 84
G P N ++ + I W P Y V Y + ++ +D++
Sbjct: 5 DLGAPQNPNAKAAGSRKIHFNWLP---PSGKPMGYRVKYWIQGDSESEAHLLDSKVPSVE 61
Query: 85 LTQLKCGTHYKINIKLVNSIGESKPSKTIAAST--------------------------- 117
LT L Y++ + + GE S ++ T
Sbjct: 62 LTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLSWAE 121
Query: 118 -----------------KGEDQTDWINIPLSNLDEALEMPLVIENLLPATRYELTISAKN 160
+D + +D L+IENL + Y T+ A+N
Sbjct: 122 PAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARN 181
Query: 161 DAG 163
AG
Sbjct: 182 GAG 184
Score = 60.9 bits (148), Expect = 8e-12
Identities = 19/113 (16%), Positives = 37/113 (32%), Gaps = 13/113 (11%)
Query: 22 VTILSPPGVP----NILLQSTTTHSISILWK-PSYDGGAIITHYIVSYRDRTED------ 70
V+ + VP + ++ + W P+ G IT Y V Y +D
Sbjct: 90 VSCRTHQEVPSEPGRLAFNVVSSTVTQLSWAEPAETNG-EITAYEVCYGLVNDDNRPIGP 148
Query: 71 -WQSVHVDAEYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTKGEDQ 122
+ + + + R + L+ Y+ +K N G + I +
Sbjct: 149 MKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLATQPKR 201
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative
splicing, cell adhesion, coiled coil, EGF-like domain,
extracellular matrix; 2.40A {Homo sapiens}
Length = 100
Score = 59.7 bits (145), Expect = 3e-12
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Query: 24 ILSPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYR--DRTEDWQSVHVDAEYR 81
+L PP NI + + T + + W+P I +V++ + D +V + +
Sbjct: 1 MLQPPF--NIKVTNITLTTAVVTWQPPI---LPIEGILVTFGRKNDPSDETTVDLTSSIT 55
Query: 82 EFTLTQLKCGTHYKINIKLVNSIGESKPSKT 112
TLT L+ T Y+I I N S P T
Sbjct: 56 SLTLTNLEPNTTYEIRIVARNGQQYSPPVST 86
Score = 28.5 bits (64), Expect = 0.46
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 142 VIENLLPATRYELTISAKNDAGS 164
+ NL P T YE+ I A+N
Sbjct: 58 TLTNLEPNTTYEIRIVARNGQQY 80
>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 108
Score = 59.0 bits (143), Expect = 5e-12
Identities = 13/97 (13%), Positives = 28/97 (28%), Gaps = 6/97 (6%)
Query: 23 TILSPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDRTE-DWQSVHVDAEYR 81
+ L+PP ++ + + + W+ + + V+Y
Sbjct: 6 SGLAPPR--HLGFSDVSHDAARVFWEGAPRP---VRLVRVTYVSSEGGHSGQTEAPGNAT 60
Query: 82 EFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTK 118
L L T Y + + + G S + K
Sbjct: 61 SAMLGPLSSSTTYTVRVTCLYPGGGSSTLTGRVTTKK 97
Score = 29.7 bits (67), Expect = 0.22
Identities = 4/23 (17%), Positives = 10/23 (43%)
Query: 142 VIENLLPATRYELTISAKNDAGS 164
++ L +T Y + ++ G
Sbjct: 63 MLGPLSSSTTYTVRVTCLYPGGG 85
>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol,
hormone-growth complex; HET: CME EST; 2.95A {Homo
sapiens}
Length = 121
Score = 59.1 bits (143), Expect = 5e-12
Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 7/107 (6%)
Query: 6 TCLADNIFGKDDIYYQVTILSPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYR 65
+ D+ +++Y+Q ++ P + + + T S+ I W + +Y ++Y
Sbjct: 10 SDYKDDDDKGENLYFQGSVSDVPT--KLEVVAATPTSLLISWDAPAVT---VRYYRITYG 64
Query: 66 --DRTEDWQSVHVDAEYREFTLTQLKCGTHYKINIKLVNSIGESKPS 110
Q V T++ LK G Y I + V +
Sbjct: 65 ETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGLRLMLAG 111
Score = 29.1 bits (65), Expect = 0.48
Identities = 6/22 (27%), Positives = 8/22 (36%)
Query: 142 VIENLLPATRYELTISAKNDAG 163
I L P Y +T+ A
Sbjct: 85 TISGLKPGVDYTITVYAVTGLR 106
>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1,
midin-2, ring finger protein 60, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 127
Score = 59.2 bits (143), Expect = 7e-12
Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 15/102 (14%)
Query: 22 VTILSPPGVPNILLQ--STTTHSISILWKPSYDGGAIITHYIVSYRDRTEDWQSVHVDAE 79
+ L+ P P+I + + + +I++ W D I+ Y + Y T + +
Sbjct: 10 LDYLTAPNPPSIREELCTASHDTITVHWIS--DDEFSISSYELQYTIFTGQANFISLYNS 67
Query: 80 YR-----------EFTLTQLKCGTHYKINIKLVNSIGESKPS 110
+T+ L+ GT Y +K +N G
Sbjct: 68 VDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRNSE 109
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like
modifier, S NOVO protein; 2.40A {Artificial gene}
Length = 97
Score = 58.2 bits (141), Expect = 9e-12
Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 7/90 (7%)
Query: 23 TILSPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYR--DRTEDWQSVHVDAEY 80
++ S P + + + T S+ I W S +++Y ++Y Q V
Sbjct: 3 SVSSVPT--KLEVVAATPTSLLISWDASSSS---VSYYRITYGETGGNSPVQEFTVPGSS 57
Query: 81 REFTLTQLKCGTHYKINIKLVNSIGESKPS 110
T++ L G Y I + S + S
Sbjct: 58 STATISGLSPGVDYTITVYAYYSYYDLYYS 87
Score = 29.7 bits (67), Expect = 0.18
Identities = 6/23 (26%), Positives = 8/23 (34%)
Query: 142 VIENLLPATRYELTISAKNDAGS 164
I L P Y +T+ A
Sbjct: 61 TISGLSPGVDYTITVYAYYSYYD 83
>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 123
Score = 58.7 bits (142), Expect = 1e-11
Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 6/99 (6%)
Query: 26 SPPGVP-NILLQSTTTHSISILWK----PSYDGGAIITHYIVSYRDR-TEDWQSVHVDAE 79
+P P + + T ++ + W P + + Y V +R + + D
Sbjct: 17 TPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAKYKSEDTT 76
Query: 80 YREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTK 118
+T T LK T Y+ ++ + + S S T A+T
Sbjct: 77 SLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATTY 115
Score = 30.2 bits (68), Expect = 0.17
Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 6/53 (11%)
Query: 112 TIAASTKGEDQTDWINIPLSNLDEALEMPLVIENLLPATRYELTISAKNDAGS 164
T+ T + + ++L L P T YE ++ + S
Sbjct: 57 TVRWRTSFSASAKYKSEDTTSLS------YTATGLKPNTMYEFSVMVTKNRRS 103
>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 115
Score = 58.2 bits (141), Expect = 1e-11
Identities = 15/102 (14%), Positives = 31/102 (30%), Gaps = 6/102 (5%)
Query: 23 TILSPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDRTEDWQSVHVDAEYRE 82
+ P + + T + WKP + Y + +
Sbjct: 6 SGPDGPT--QLRALNLTEGFAVLHWKPPQ---NPVDTYDIQVTAPGAPPLQAETPGSAVD 60
Query: 83 FTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTKGEDQTD 124
+ L L T+Y ++ + + P+ +I +T E D
Sbjct: 61 YPLHDLVLHTNYTATVRGLRGPNLTSPA-SITFTTGLEAPRD 101
Score = 28.2 bits (63), Expect = 0.82
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 142 VIENLLPATRYELTISAKNDAGST 165
+ +L+ T Y T+ T
Sbjct: 62 PLHDLVLHTNYTATVRGLRGPNLT 85
>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 104
Score = 57.5 bits (139), Expect = 2e-11
Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Query: 25 LSPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYR--DRTEDWQSVHVDAEYRE 82
L PP + L + T ++ + W+PS A THY+V + + V E
Sbjct: 9 LPPPR--ALTLAAVTPRTVHLTWQPS----AGATHYLVRCSPASPKGEEEEREVQVGRPE 62
Query: 83 FTLTQLKCGTHYKINIKLVNSIGESKPSKTIA 114
L L+ G Y+++++ + S+ A
Sbjct: 63 VLLDGLEPGRDYEVSVQSLRGPEGSEARGIRA 94
Score = 26.7 bits (59), Expect = 2.3
Identities = 5/32 (15%), Positives = 14/32 (43%)
Query: 142 VIENLLPATRYELTISAKNDAGSTNKNYVFAT 173
+++ L P YE+++ + + + A
Sbjct: 64 LLDGLEPGRDYEVSVQSLRGPEGSEARGIRAR 95
>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 113
Score = 57.2 bits (138), Expect = 3e-11
Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 6/98 (6%)
Query: 26 SPPGVP-NILLQSTTTHSISILWK----PSYDGGAIITHYIVSYRDR-TEDWQSVHVDAE 79
P P + + +I I W P + +Y V ++ + + + +A
Sbjct: 7 GPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANAT 66
Query: 80 YREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAAST 117
+ +T LK T Y+ ++ + S S T +T
Sbjct: 67 TLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTT 104
Score = 32.1 bits (73), Expect = 0.035
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 6/53 (11%)
Query: 112 TIAASTKGEDQTDWINIPLSNLDEALEMPLVIENLLPATRYELTISAKNDAGS 164
T+ T T + N + L ++ L P T YE ++ S
Sbjct: 47 TVRWKTNIPANTKYKNANATTLS------YLVTGLKPNTLYEFSVMVTKGRRS 93
>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII
domain, dscaml1 protein, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 122
Score = 57.0 bits (138), Expect = 4e-11
Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 15/111 (13%)
Query: 22 VTILSPPGVP-----NILLQSTTTHSISILWKP---SYDGGAIITHYIVSYR------DR 67
I + P ++ LQ T+ SI + WK G +I Y + YR +
Sbjct: 6 SGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNG-VIRGYQIGYRENSPGSNG 64
Query: 68 TEDWQSVHVDAEYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTK 118
+ + +TL LK Y + ++ N G S I A+T
Sbjct: 65 QYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTL 115
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 60.3 bits (145), Expect = 5e-11
Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 5/96 (5%)
Query: 26 SPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDRTED----WQSVHVDAEYR 81
+ V + + + + ++W+ + +I Y VSYR ++ + A R
Sbjct: 792 ADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALER 851
Query: 82 EFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAAST 117
L L G Y + I+ + G ++
Sbjct: 852 GCRLRGLSPGN-YSVRIRATSLAGNGSWTEPTYFYV 886
Score = 51.1 bits (121), Expect = 5e-08
Identities = 34/193 (17%), Positives = 56/193 (29%), Gaps = 49/193 (25%)
Query: 17 DIYYQVTILSPPGVP-NILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDRTEDWQSVH 75
DI Y T + P VP + + S ++ I + WKP D ITHY+V + + ED +
Sbjct: 584 DIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELFE 643
Query: 76 VDAEYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTK----GEDQTDWINIPLS 131
+D + + +S ++ +A D + S
Sbjct: 644 LD----YCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEES 699
Query: 132 NLDEALEMPL----------------------------------------VIENLLPATR 151
+ + E L VI L T
Sbjct: 700 SFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTG 759
Query: 152 YELTISAKNDAGS 164
Y + + A N
Sbjct: 760 YRIELQACNQDTP 772
Score = 37.2 bits (85), Expect = 0.003
Identities = 14/111 (12%), Positives = 32/111 (28%), Gaps = 26/111 (23%)
Query: 26 SPPGVPNILLQSTTTHSISILW-KPSYDGGAIITHYIVSYRDRTED-------------- 70
+ T+ I + W + +++ Y++
Sbjct: 468 CENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSN 527
Query: 71 -WQSVHVDAEYR----------EFTLTQLKCGTHYKINIKLVNSIGESKPS 110
W V +D R + + LK T Y I +K + + + + +
Sbjct: 528 SWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRT 578
Score = 31.0 bits (69), Expect = 0.25
Identities = 11/79 (13%), Positives = 24/79 (30%), Gaps = 1/79 (1%)
Query: 92 THYKINIKLVNSIGESKPSKTIAASTKGEDQTDWINIPLSNLDEALEMP-LVIENLLPAT 150
+ + K ++ A + D SN ++ P ++ L P T
Sbjct: 501 LGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWT 560
Query: 151 RYELTISAKNDAGSTNKNY 169
+Y + + + Y
Sbjct: 561 QYAIFVKTLVTFSDERRTY 579
>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 103
Score = 56.2 bits (136), Expect = 5e-11
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 27 PPGVP-NILLQSTTTHSISILWKP---SYDGGAIITHYIVSYRDRTEDWQSVHVDAEYRE 82
P G P N+ + TT + + W P + G I Y V +RD + ++ +
Sbjct: 8 PSGFPQNLHVTGLTTSTTELAWDPPVLAERNG-RIISYTVVFRDINSQQELQNITTDT-R 65
Query: 83 FTLTQLKCGTHYKINIKLVNSIGESKPSKTIAAST 117
FTLT LK T Y I ++ S G S +I + T
Sbjct: 66 FTLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSRT 100
Score = 29.6 bits (67), Expect = 0.27
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 141 LVIENLLPATRYELTISAKNDAGS 164
+ L P T Y++ + A GS
Sbjct: 66 FTLTGLKPDTTYDIKVRAWTSKGS 89
>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein,
adnect antitumor, drug, engineered binding protein; HET:
NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D*
Length = 114
Score = 56.1 bits (135), Expect = 7e-11
Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 6/93 (6%)
Query: 28 PGVP-NILLQSTTTHSISILWKPSYDGGAIITHYIVSYR--DRTEDWQSVHVDAEYREFT 84
VP ++ + + T S+ I W +Y ++Y Q V T
Sbjct: 4 SDVPRDLEVVAATPTSLLISWDSG---RGSYQYYRITYGETGGNSPVQEFTVPGPVHTAT 60
Query: 85 LTQLKCGTHYKINIKLVNSIGESKPSKTIAAST 117
++ LK G Y I + V +
Sbjct: 61 ISGLKPGVDYTITVYAVTDHKPHADGPHTYHES 93
Score = 27.2 bits (60), Expect = 1.8
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 142 VIENLLPATRYELTISAKNDAGS 164
I L P Y +T+ A D
Sbjct: 60 TISGLKPGVDYTITVYAVTDHKP 82
>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 94
Score = 55.5 bits (134), Expect = 8e-11
Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 7/95 (7%)
Query: 25 LSPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYR--DRTEDWQSVHVDAEYRE 82
+ P + SI I W+ ++ Y V+Y + D E
Sbjct: 2 IDRP--KGLAFTDVDVDSIKIAWESPQ---GQVSRYRVTYSSPEDGIHELFPAPDGEEDT 56
Query: 83 FTLTQLKCGTHYKINIKLVNSIGESKPSKTIAAST 117
L L+ G+ Y +++ ++ ES+P ++
Sbjct: 57 AELQGLRPGSEYTVSVVALHDDMESQPLIGTQSTA 91
Score = 28.9 bits (65), Expect = 0.36
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 142 VIENLLPATRYELTISAKNDAGS 164
++ L P + Y +++ A +D
Sbjct: 58 ELQGLRPGSEYTVSVVALHDDME 80
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 59.5 bits (144), Expect = 8e-11
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 26 SPPGVPNILLQSTTTHSISILWK-PSYDGGAIITHYIVSYRDRTED-WQSVHVDAEYREF 83
PP P I ++ + WK P+ DGG+++T+Y + R+ W + Y
Sbjct: 11 EPPRFPIIENILDE--AVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPC-AKSRYTYT 67
Query: 84 TLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTKGEDQ 122
T+ L+ G Y+ I N G+SKP + A D+
Sbjct: 68 TIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDE 106
>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 134
Score = 56.6 bits (137), Expect = 8e-11
Identities = 18/109 (16%), Positives = 39/109 (35%), Gaps = 13/109 (11%)
Query: 22 VTILSPPGVP-----NILLQSTTTHSISILWKP---SYDGGAIITHYIVSYR----DRTE 69
+ + P ++ S + ++ + W P G +IT Y V+Y +
Sbjct: 9 IEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNG-VITQYSVAYEAVDGEDRG 67
Query: 70 DWQSVHVDAEYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTK 118
+ E+ + L L+ T Y++ ++ +G S + T
Sbjct: 68 RHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTD 116
>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 137
Score = 55.8 bits (134), Expect = 1e-10
Identities = 18/117 (15%), Positives = 33/117 (28%), Gaps = 12/117 (10%)
Query: 14 GKDDIYYQVTILSPPGVPNILLQSTTTHSISILWKP---------SYDGGAIITHYIVSY 64
G ++ +LS P ++ + W P + Y V
Sbjct: 7 GDEETKAFEALLSNIVKPVA--SDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLI 64
Query: 65 RDRTEDWQ-SVHVDAEYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTKGE 120
+D + E TL LK Y ++ + + PS+ +T
Sbjct: 65 SSTGKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTTLSC 121
Score = 26.1 bits (57), Expect = 5.5
Identities = 6/43 (13%), Positives = 17/43 (39%)
Query: 122 QTDWINIPLSNLDEALEMPLVIENLLPATRYELTISAKNDAGS 164
+ + ++ E + + +L PA Y + A+ ++
Sbjct: 65 SSTGKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIK 107
>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine
phosphatase delta, R-PTP-delta, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 121
Score = 55.1 bits (133), Expect = 2e-10
Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 8/105 (7%)
Query: 22 VTILSPPGVP-----NILLQSTTTHSISILWKPSYDGGAIITHYIVSYR---DRTEDWQS 73
V + P ++ + ++ +I + WK + I Y V Y + +
Sbjct: 9 VLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMDPTQHVNNWM 68
Query: 74 VHVDAEYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTK 118
H A+ + T+ L Y + + SIG+ S I T+
Sbjct: 69 KHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQ 113
Score = 28.5 bits (64), Expect = 0.73
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 142 VIENLLPATRYELTISAKNDAG 163
I NL+P Y + + A G
Sbjct: 79 TIGNLVPQKTYSVKVLAFTSIG 100
>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 112
Score = 55.0 bits (132), Expect = 2e-10
Identities = 15/113 (13%), Positives = 38/113 (33%), Gaps = 17/113 (15%)
Query: 21 QVTILSPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYRD----------RTED 70
+ S P + + + TT S+ + W+ +++ + R
Sbjct: 3 SGSSGSRPRLSQLSVTDVTTSSLRLNWEAPPGA---FDSFLLRFGVPSPSTLEPHPRPLL 59
Query: 71 WQSVHVDAEYREFTLTQLKCGTHYKINIKLVNSIGESKPS----KTIAASTKG 119
+ + V L L+ GT Y + + + ++ +T++ + G
Sbjct: 60 QRELMVPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQGTARTLSGPSSG 112
>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK,
fibronectin type III (FN3) domain, structural genomics,
NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1
Length = 107
Score = 53.6 bits (129), Expect = 5e-10
Identities = 14/92 (15%), Positives = 32/92 (34%), Gaps = 4/92 (4%)
Query: 27 PPGVPNILLQSTTTHSISILWKPS-YDGGAIITHYIVSYRDRTEDWQSVHVDAEYREFTL 85
++ L + + W S Y + ++ E+W + ++ L
Sbjct: 10 SLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQMVLEPRV---LL 66
Query: 86 TQLKCGTHYKINIKLVNSIGESKPSKTIAAST 117
T+L+ T Y + ++ + +G S T
Sbjct: 67 TKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRT 98
Score = 29.0 bits (65), Expect = 0.40
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 142 VIENLLPATRYELTISAKNDAG 163
++ L P T Y + + G
Sbjct: 65 LLTKLQPDTTYIVRVRTLTPLG 86
>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 120
Score = 53.7 bits (129), Expect = 6e-10
Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 7/103 (6%)
Query: 25 LSPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYR-----DRTEDWQSVHVDA- 78
L V T ++ + W I Y V YR T WQ++
Sbjct: 14 LGDVLVRLHNPVVLTPTTVQVTWTVD-RQPQFIQGYRVMYRQTSGLQATSSWQNLDAKVP 72
Query: 79 EYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTKGED 121
R L LK G Y+I ++ + + S++ T E
Sbjct: 73 TERSAVLVNLKKGVTYEIKVRPYFNEFQGMDSESKTVRTTEES 115
Score = 28.7 bits (64), Expect = 0.59
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 142 VIENLLPATRYELTISAKNDAG 163
V+ NL YE+ + +
Sbjct: 78 VLVNLKKGVTYEIKVRPYFNEF 99
>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, NG-CAM related cell adhesion
molecule, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 125
Score = 52.0 bits (125), Expect = 3e-09
Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 18/114 (15%)
Query: 22 VTILSPPGVP-----NILLQSTTTHSISILWKP---SYDGGAIITHYIVSYR-------- 65
+ S +P N+ + + + W P G + Y + Y
Sbjct: 5 SSGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRG-HLQGYRIYYWKTQSSSKR 63
Query: 66 -DRTEDWQSVHVDAEYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTK 118
R + + + L L+ +HY +N+++VN GE S +T
Sbjct: 64 NRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTP 117
Score = 28.1 bits (63), Expect = 0.94
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 141 LVIENLLPATRYELTISAKNDAGS 164
++ L P + Y L + N G
Sbjct: 82 GMLPGLEPFSHYTLNVRVVNGKGE 105
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 52.5 bits (125), Expect = 1e-08
Identities = 22/110 (20%), Positives = 39/110 (35%), Gaps = 8/110 (7%)
Query: 20 YQVTILSPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYR-DRTEDWQSV---H 75
+PP +++ + + + W II Y + YR W +
Sbjct: 195 VYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPED 254
Query: 76 VDAEYREFTLTQLKCGTHYKINIKLVNSIGE---SKPSKTIAASTKGEDQ 122
+ FT+ LK T Y I+ + G+ S S+ + T ED+
Sbjct: 255 TASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITY-EDR 303
Score = 51.0 bits (121), Expect = 4e-08
Identities = 21/207 (10%), Positives = 48/207 (23%), Gaps = 49/207 (23%)
Query: 5 YTCLADNIFGKDDIYYQVTILSPPGVP-NILLQSTTTHSISILWKPSYDGGAIITHYIVS 63
L ++ + PP P N+ + W + + T++ +
Sbjct: 81 CNILTFGQLEQNVYGITIISGLPPEKPKNLSCIVNEGKKMRCEWDGGRETH-LETNFTLK 139
Query: 64 YRDRTEDWQ--SVHVDAEYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAAST---- 117
T + D + ++ ++ N++G+
Sbjct: 140 SEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVK 199
Query: 118 ----------------------------------------KGEDQTDWINIPLSNLDEAL 137
+ +D + W IP +
Sbjct: 200 PNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTR 259
Query: 138 EMPLVIENLLPATRYELTISAKNDAGS 164
+++L P T Y I + G
Sbjct: 260 SS-FTVQDLKPFTEYVFRIRCMKEDGK 285
>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine
6 R beta subunit, signaling protein; 2.00A {Homo
sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A
Length = 215
Score = 51.5 bits (123), Expect = 1e-08
Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 7/106 (6%)
Query: 20 YQVTILSPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDRTED-WQSV---H 75
+PP +++ + + + W II Y + YR + W +
Sbjct: 99 VYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPED 158
Query: 76 VDAEYREFTLTQLKCGTHYKINIKLVNSIGE---SKPSKTIAASTK 118
+ FT+ LK T Y I+ + G+ S S+ + T
Sbjct: 159 TASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITY 204
>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 117
Score = 49.1 bits (117), Expect = 3e-08
Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 4/97 (4%)
Query: 27 PPGVPNILLQSTTTHSISILWKP--SYDGGAIITHYIVSYRDRTEDWQSVHVDAEYREFT 84
P P ++ + T + + W+ + + + +T Y V YR +++ V +
Sbjct: 18 PSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQVLNTN--KTSA 75
Query: 85 LTQLKCGTHYKINIKLVNSIGESKPSKTIAASTKGED 121
L Y I +K G+ S+ I
Sbjct: 76 ELVLPIKEDYIIEVKATTDGGDGTSSEQIRIPRITSS 112
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 47.9 bits (113), Expect = 5e-07
Identities = 30/218 (13%), Positives = 62/218 (28%), Gaps = 65/218 (29%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVPNIL-LQSTTTHSISILWKPSYDGGAIITHYI 61
GNY+C G+ + + PP P + + + ++ W P + T +
Sbjct: 73 GNYSCYRA---GRPAGTVHLLVDVPPEEPQLSCFRKSPLSNVVCEWGPRSTPS-LTTKAV 128
Query: 62 VSYR--------DRTEDWQSVHVDAEYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTI 113
+ R D E Q ++ + Y +++ + +S+G SK SKT
Sbjct: 129 LLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCVASSVG-SKFSKTQ 187
Query: 114 AAST-----------------------------------------------KGEDQTDWI 126
+ E +
Sbjct: 188 TFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFT 247
Query: 127 NIPLSNLDEALEMPLVIENLLPATRYELTISAKNDAGS 164
+ + L+ VI + R+ + + A+ + G
Sbjct: 248 TWMVKD----LQHHCVIHDAWSGLRHVVQLRAQEEFGQ 281
Score = 44.9 bits (105), Expect = 5e-06
Identities = 12/89 (13%), Positives = 34/89 (38%), Gaps = 3/89 (3%)
Query: 26 SPPGVPNILLQSTTTHSISILWKP--SYDGGAIITHYIVSYR-DRTEDWQSVHVDAEYRE 82
PP + + +S+ W+ S++ + + YR +R++ + + V
Sbjct: 198 DPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQHH 257
Query: 83 FTLTQLKCGTHYKINIKLVNSIGESKPSK 111
+ G + + ++ G+ + S+
Sbjct: 258 CVIHDAWSGLRHVVQLRAQEEFGQGEWSE 286
>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER,
receptor tyrosine kinase mertk, FN3 domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 124
Score = 45.9 bits (109), Expect = 5e-07
Identities = 13/112 (11%), Positives = 31/112 (27%), Gaps = 13/112 (11%)
Query: 22 VTILSPPGVP-----NI-LLQSTTTHSISILWKP---SYDGGAIITHYIVSYRDRTEDWQ 72
+ + G P N+ + + ++ ++ I W G + Y +S+ ++
Sbjct: 9 ILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDG-ELVGYRISHVWQSAGIS 67
Query: 73 S---VHVDAEYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTKGED 121
V ++ + I V G S +
Sbjct: 68 KELLEEVGQNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFIPAHS 119
Score = 27.1 bits (60), Expect = 2.1
Identities = 4/23 (17%), Positives = 7/23 (30%)
Query: 142 VIENLLPATRYELTISAKNDAGS 164
I + + I+A G
Sbjct: 82 RISVQVHNATCTVRIAAVTRGGV 104
>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin
type-III, beta-N-acetylglucosaminidase, cohesin,
hydrolase; 1.80A {Clostridium perfringens}
Length = 238
Score = 46.9 bits (110), Expect = 8e-07
Identities = 13/99 (13%), Positives = 31/99 (31%), Gaps = 5/99 (5%)
Query: 20 YQVTILSPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDRTEDWQSVHVDAE 79
+ V + ++++ W + + + Y+D + + +
Sbjct: 144 GTSPEIVVNPVRDFKASEINKKNVTVTWTEPETTEGLEGYIL--YKDGK---KVAEIGKD 198
Query: 80 YREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTK 118
+T +L T Y I S GE +++ T
Sbjct: 199 ETSYTFKKLNRHTIYNFKIAAKYSNGEVSSKESLTLRTA 237
Score = 26.0 bits (56), Expect = 7.6
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 142 VIENLLPATRYELTISAKNDAG 163
+ L T Y I+AK G
Sbjct: 203 TFKKLNRHTIYNFKIAAKYSNG 224
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 46.8 bits (110), Expect = 1e-06
Identities = 22/208 (10%), Positives = 44/208 (21%), Gaps = 48/208 (23%)
Query: 4 NYTCLADNIFGKDDIYYQVTILSPPGVP-NILLQSTTTHSISILWKPSYDG---GAIITH 59
+ + + PP P + ++ I W P G T
Sbjct: 258 SSGTNVVFTTEDNIFGTVIFAGYPPDTPQQLNCETHDLKEIICSWNPGRVTALVGPRATS 317
Query: 60 YIVSYRDRTED---WQSVHVDAEYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAAS 116
Y + + ++ E + L Y + N +G S+ + + +
Sbjct: 318 YTLVESFSGKYVRLKRAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQSTILVNIT 377
Query: 117 T-----------------------------------------KGEDQTDWINIPLSNLDE 135
K + E
Sbjct: 378 EKVYPHTPTSFKVKDINSTAVKLSWHLPGNFAKINFLCEIEIKKSNSVQEQRNVTIQGVE 437
Query: 136 ALEMPLVIENLLPATRYELTISAKNDAG 163
+ ++ L P T Y I +
Sbjct: 438 NSSYLVALDKLNPYTLYTFRIRCSTETF 465
Score = 45.2 bits (106), Expect = 4e-06
Identities = 21/125 (16%), Positives = 36/125 (28%), Gaps = 10/125 (8%)
Query: 4 NYTCLADNIFGKDDIYYQVTILS--PPGVP-NILLQSTTTHSISILWKPSYDGGAIITHY 60
N+T A N G+ V I P P + ++ + ++ + W + I
Sbjct: 356 NFTLNAHNPLGRSQSTILVNITEKVYPHTPTSFKVKDINSTAVKLSWHLPGNFAKINFLC 415
Query: 61 IVSYRDR-----TEDWQSVHVDAEYREFTLTQLKCGTHYKINI--KLVNSIGESKPSKTI 113
+ + + V+ L +L T Y I SK S
Sbjct: 416 EIEIKKSNSVQEQRNVTIQGVENSSYLVALDKLNPYTLYTFRIRCSTETFWKWSKWSNKK 475
Query: 114 AASTK 118
T
Sbjct: 476 QHLTT 480
Score = 26.7 bits (58), Expect = 5.8
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 141 LVIENLLPATRYELTISAKNDAGSTNKNYVFATLS 175
L+ + L Y T++A N G + +
Sbjct: 344 LLFQMLPNQEIYNFTLNAHNPLGRSQSTILVNITE 378
>2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine
phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine
phosphatase receptor type J; NMR {Homo sapiens}
Length = 104
Score = 42.0 bits (98), Expect = 1e-05
Identities = 16/96 (16%), Positives = 35/96 (36%), Gaps = 4/96 (4%)
Query: 27 PPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDRTEDWQSVHVDAEYREFTLT 86
V ++ + + S++++WK S + + Y + T+ S +++ +
Sbjct: 8 AIQVFDVTAVNISATSLTLIWKVSDNESSSNYTYKIHVAGETD---SSNLNVSEPRAVIP 64
Query: 87 QLKCGTHYKINIKLVNSIGESKPSKTIAASTKGEDQ 122
L+ T Y I + V E P + T
Sbjct: 65 GLRSSTFYNITVCPVLGDIEGTPG-FLQVHTPPVPS 99
>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A
{Clostridium thermocellum}
Length = 103
Score = 41.6 bits (98), Expect = 1e-05
Identities = 16/98 (16%), Positives = 36/98 (36%), Gaps = 9/98 (9%)
Query: 24 ILSPPGVPNIL--LQSTTTHSISILWKPSYDGGAIITHYIVSYRDRTED--WQSVHVDAE 79
++S P P L + ++ ++ ++ W + Y V R + ++ +
Sbjct: 1 MVSAPAFPTGLSAVLDSSGNTANLTWNAAPG----ANSYNV-KRSTKSGGPYTTIATNIT 55
Query: 80 YREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAAST 117
+T T + GT Y + V++ E+ S
Sbjct: 56 STNYTDTGVATGTKYYYVVSAVSNGVETLNSAEAILQY 93
>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling
complex, extracellular space, IM system receptor; HET:
NAG; 3.50A {Homo sapiens} PDB: 3se3_A*
Length = 414
Score = 42.7 bits (99), Expect = 3e-05
Identities = 18/115 (15%), Positives = 32/115 (27%), Gaps = 16/115 (13%)
Query: 19 YYQVTILSPPGVPNILLQSTTTHSISILWKPSYDGGAIIT------HYIVSYRDRTEDWQ 72
L PP + + S I G Y + + + T + +
Sbjct: 304 TEIQAFLLPPVFN----IRSLSDSFHIYIGAPKQSGNTPVIQDYPLIYEIIFWENTSNAE 359
Query: 73 SVHVDAEYREFTLTQLKCGTHYKINIKLVNSIG----ESKPSKTIAASTKGEDQT 123
+ + + T+ LK T Y + + S S + TK T
Sbjct: 360 -RKIIEKKTDVTVPNLKPLTVYCVKARAHTMDEKLNKSSVFSDAVCEKTK-PGNT 412
Score = 30.0 bits (66), Expect = 0.47
Identities = 22/202 (10%), Positives = 49/202 (24%), Gaps = 49/202 (24%)
Query: 16 DDIYYQVTILSPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDRTEDWQSVH 75
+ T+ + P + S + + W +Y ++ ++ R
Sbjct: 195 PVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYK 254
Query: 76 VDAEYREFTLTQLKC--------GTHYKINIKLVNSIGESKPSKTIAASTKG-------- 119
+ +C Y + ++ + S S+ I T+
Sbjct: 255 WKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQAFLLPPV 314
Query: 120 --------------EDQTDWINIPLSNL--------------DEALEMP-----LVIENL 146
N P+ + ++ + + NL
Sbjct: 315 FNIRSLSDSFHIYIGAPKQSGNTPVIQDYPLIYEIIFWENTSNAERKIIEKKTDVTVPNL 374
Query: 147 LPATRYELTISAKNDAGSTNKN 168
P T Y + A NK+
Sbjct: 375 KPLTVYCVKARAHTMDEKLNKS 396
Score = 29.6 bits (65), Expect = 0.73
Identities = 12/90 (13%), Positives = 29/90 (32%), Gaps = 8/90 (8%)
Query: 25 LSPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDRTEDWQSV----HVDAEY 80
L P + + + I + W S + +T + ++W + ++ +
Sbjct: 8 LKSP--QKVEVDIIDDNFI-LRWNRSDESVGNVTFSFDYQKTGMDNWIKLSGCQNITSTK 64
Query: 81 REFTLTQLKCGTHYKINIKLVNSIGESKPS 110
F+ +L K+ I+ S
Sbjct: 65 CNFSSLKLNVYEEIKLRIRAEKE-NTSSWY 93
>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic
cytokine, cytokine receptor class 1, complex
(cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A
Length = 227
Score = 42.0 bits (98), Expect = 3e-05
Identities = 24/164 (14%), Positives = 48/164 (29%), Gaps = 17/164 (10%)
Query: 21 QVTILSPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDRTEDWQ--SVHVDA 78
+ +L+ G +L + + W+ + G Y SY+ E W+ +H
Sbjct: 15 KAALLAARGPEELLCFTERLEDLVCFWEEAASAGVGPGQYSFSYQLEDEPWKLCRLHQAP 74
Query: 79 EYRE-------FTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTKGEDQTDWINIPLS 131
R ++ + + I + +
Sbjct: 75 TARGAVRFWCSLPTADTSSFVPLELRVTAASGAPRYHRVIHINEVVLLDAPV---GLVAR 131
Query: 132 NLDEALEM-----PLVIENLLPATRYELTISAKNDAGSTNKNYV 170
DE+ + P + RYE+ +SA AGS + +
Sbjct: 132 LADESGHVVLRWLPPPETPMTSHIRYEVDVSAGQGAGSVQRVEI 175
Score = 34.7 bits (79), Expect = 0.010
Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 5/85 (5%)
Query: 17 DIYYQVTILSPPGVPNILLQSTTTHSISILWK-PSYDGGAIITHYIVSYRDR--TEDWQS 73
I V + +P G+ + + + + W P Y V Q
Sbjct: 115 HINEVVLLDAPVGLV--ARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGQGAGSVQR 172
Query: 74 VHVDAEYREFTLTQLKCGTHYKINI 98
V + E L+ L+ T Y +
Sbjct: 173 VEILEGRTECVLSNLRGRTRYTFAV 197
>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain,
carbohydrase, horizontal gene transfer, hydrolase; NMR
{Bacillus circulans} SCOP: b.1.2.1
Length = 88
Score = 38.8 bits (91), Expect = 9e-05
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 9/93 (9%)
Query: 27 PPGVP-NILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDRTEDWQSVHVDAEYREFTL 85
P P N+ + TT SI++ W S D +T Y V Y T +V T+
Sbjct: 3 APTAPTNLASTAQTTSSITLSWTASTDNVG-VTGYDV-YNG-TALATTVTGTT----ATI 55
Query: 86 TQLKCGTHYKINIKLVNSIG-ESKPSKTIAAST 117
+ L T Y +K ++ G S S ++ T
Sbjct: 56 SGLAADTSYTFTVKAKDAAGNVSAASNAVSVKT 88
Score = 25.3 bits (56), Expect = 5.7
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 142 VIENLLPATRYELTISAKNDAG 163
I L T Y T+ AK+ AG
Sbjct: 54 TISGLAADTSYTFTVKAKDAAG 75
>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin
domain, cytokine-cytokine REC complex; HET: NAG; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B*
2erj_B*
Length = 214
Score = 40.5 bits (94), Expect = 1e-04
Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 11/103 (10%)
Query: 25 LSPPGVPNILLQSTTTHSISILWKPSYDGGAIITH--YIVSYRDRTEDWQSVH---VDAE 79
L P ++ + TH +I W+ S H + W+ + +
Sbjct: 106 LMAP--ISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQK 163
Query: 80 YREFTLTQLKCGTHYKINIKLVNSIGE----SKPSKTIAASTK 118
L L T Y+ +++ GE S S+ +A TK
Sbjct: 164 QEWICLETLTPDTQYEFQVRVKPLQGEFTTWSPWSQPLAFRTK 206
Score = 30.5 bits (68), Expect = 0.25
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 124 DWINIPLSNLDEALEMPLVIENLLPATRYELTISAKNDAGST 165
W PL L + + + +E L P T+YE + K G
Sbjct: 151 TWEEAPLLTLKQK-QEWICLETLTPDTQYEFQVRVKPLQGEF 191
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 39.0 bits (91), Expect = 1e-04
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGV 30
G+YT +A N +GKD+ + PG+
Sbjct: 75 GDYTLIAKNEYGKDEKQISAHFMGWPGI 102
>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine
receptor complex, alpha helical cytokin beta sandwhich
receptor fold, signaling complex; HET: NAG; 2.80A {Homo
sapiens}
Length = 221
Score = 40.6 bits (94), Expect = 1e-04
Identities = 30/207 (14%), Positives = 65/207 (31%), Gaps = 40/207 (19%)
Query: 25 LSPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYRD-RTEDWQSV----HVDAE 79
L P NI S ++ + W P + Y V Y + W + +++
Sbjct: 9 LPKP--ANITFLSINMKNV-LQWTPPEGLQGVKVTYTVQYFIYGQKKWLNKSECRNINRT 65
Query: 80 YREFTLTQLKCGTHYKINIKLVNSIGESKPSKT---------------IAASTKGEDQTD 124
Y + + Y ++ + SK +++ +A +T + +
Sbjct: 66 YCDLSAETSDYEHQYYARVRAIWGTKCSKWAESGRFYPFLETQIGPPEVALTTDEKSISV 125
Query: 125 WINIPLSNLDEALEMPLVIENLLPATRYELTI-----SAKNDAGSTNKNYVFATLSVNGG 179
+ P ++P+ ++ + +Y +++ + TN V L N
Sbjct: 126 VLTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKSNRTWSQCVTNHTLVLTWLEPNTL 185
Query: 180 -----KAFHS-------WSPIQVHTTL 194
++F S Q TL
Sbjct: 186 YCVHVESFVPGPPRRAQPSEKQCARTL 212
>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains
of fibronectin-III domains, FOU fibronectin-III domains
PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A*
3cxe_A* 1egj_A* 1c8p_A
Length = 419
Score = 40.4 bits (93), Expect = 2e-04
Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 9/100 (9%)
Query: 27 PPGVPNILLQSTTTHSISILWK-PSYDGGAIITHYIVSYRDRTEDWQSVHVD--AEYREF 83
P++ + S S+ W+ I + + YR T W+ +
Sbjct: 321 QMAPPSLQVTKDGD-SYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQNAHSM 379
Query: 84 TLTQLKCGTHYKINI--KLVNSIGE---SKPSKTIAASTK 118
L L+ T Y + + + S+ S+ + T+
Sbjct: 380 ALPALEPSTRYWARVRVRTSRTGYNGIWSEWSEARSWDTE 419
Score = 38.1 bits (87), Expect = 0.001
Identities = 19/134 (14%), Positives = 36/134 (26%), Gaps = 10/134 (7%)
Query: 1 MVGNYTCLADNIFGKDDIYYQVTILSPPGVPNILLQSTTTHSISILWKPSYDGGA----- 55
V ++ D G + +T P P L ST + W +
Sbjct: 83 DVDYFSFQPDRPLG-TRLTVTLTQHVQPPEPRDLQISTDQDHFLLTWSVALGSPQSHWLS 141
Query: 56 -IITHYIVSYR---DRTEDWQSVHVDAEYREFTLTQLKCGTHYKINIKLVNSIGESKPSK 111
+ V Y+ D ED + + L + Y ++ + G +
Sbjct: 142 PGDLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGR 201
Query: 112 TIAASTKGEDQTDW 125
S + +
Sbjct: 202 PSKWSPEVCWDSQP 215
Score = 29.2 bits (64), Expect = 0.89
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 120 EDQTDWINIPLSNLDEALEMPLVIENLLPATRYELTISAKNDAGS 164
+D W + L A M L L P+TRY + +
Sbjct: 360 KDTATWKDSKTETLQNAHSMAL--PALEPSTRYWARVRVRTSRTG 402
>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor,
receptor, glycoprotein, polymorphism, secreted,
cytokine/cytokine receptor complex; 2.76A {Homo sapiens}
Length = 211
Score = 39.4 bits (91), Expect = 3e-04
Identities = 17/101 (16%), Positives = 32/101 (31%), Gaps = 8/101 (7%)
Query: 25 LSPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYRD-RTEDWQSV----HVDAE 79
P + QS H+I + W+P + Y V Y+ W++
Sbjct: 8 SLKP--QRVQFQSRNFHNI-LQWQPGRALTGNSSVYFVQYKIYGQRQWKNKEDCWGTQEL 64
Query: 80 YREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTKGE 120
+ T Y ++ ++ S+ S T + E
Sbjct: 65 SCDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWE 105
Score = 37.5 bits (86), Expect = 0.001
Identities = 12/109 (11%), Positives = 32/109 (29%), Gaps = 10/109 (9%)
Query: 19 YYQVTILSPPGVP--------NILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDRTED 70
+ T + PP + ++L + K Y V + + +
Sbjct: 102 PWWETKIDPPVMNITQVNGSLLVILHAPNLPYRYQKEKNVSIEDYYELLYRVFIINNSLE 161
Query: 71 WQSVHVDAEYREFTLTQLKCGTHYKINIKLVNSI--GESKPSKTIAAST 117
+ + +R + L + Y + ++ + S+ S+
Sbjct: 162 KEQKVYEGAHRAVEIEALTPHSSYCVVAEIYQPMLDRRSQRSEERCVEI 210
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 38.0 bits (88), Expect = 4e-04
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVPNILLQSTTTHSIS 44
GNYT LA N FG+ + P N T+S S
Sbjct: 76 GNYTLLAANPFGQASASIMAAFMDNPFEFNPEDPIPDTNSTS 117
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 37.1 bits (86), Expect = 6e-04
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVPN 32
GNYT +A N G + L P +
Sbjct: 78 GNYTLIAKNPLGTANQTINGHFLKEPFPVD 107
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 8e-04
Identities = 36/176 (20%), Positives = 60/176 (34%), Gaps = 60/176 (34%)
Query: 20 YQVTILS---PPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDRTEDWQSVHV 76
Y VT PG L+ T H ++T ++ T+ W+S
Sbjct: 249 YVVTAKLLGFTPGELRSYLKGATGH-----------SQGLVTAVAIA---ETDSWES--- 291
Query: 77 DAEYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTKGEDQTDWINIPLSNLDEA 136
F ++ K I ++ IG + + ++P S L+++
Sbjct: 292 ------FFVSVRKA-------ITVLFFIG-----------VRCYEAYPNTSLPPSILEDS 327
Query: 137 LE--------MPLVIENLLPATRYEL--TISAKNDAGSTNKNYVFATLSVNGGKAF 182
LE M L I NL T+ ++ ++ N K V +L VNG K
Sbjct: 328 LENNEGVPSPM-LSISNL---TQEQVQDYVNKTNSHLPAGKQ-VEISL-VNGAKNL 377
Score = 34.6 bits (79), Expect = 0.017
Identities = 24/155 (15%), Positives = 51/155 (32%), Gaps = 46/155 (29%)
Query: 19 YYQVTILSPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIV-----SYRDRTEDWQS 73
Y I++ + S S L++ +G A + + + T+D+
Sbjct: 126 YITARIMAK--------RPFDKKSNSALFRAVGEGNAQL--VAIFGGQGN----TDDY-- 169
Query: 74 VHVDAEYREFTLTQLKCGTHYKINIK-LVNSIGE------SKPSKTIAASTKGEDQTDWI 126
+ E R+ T Y + + L+ E T+G + +W+
Sbjct: 170 --FE-ELRDLYQT-------YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 127 NIPLSNLDE------ALEMPLVIENLLPATRYELT 155
P + D+ + PL+ ++ Y +T
Sbjct: 220 ENPSNTPDKDYLLSIPISCPLI--GVIQLAHYVVT 252
>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine,
hormone-hormone recep complex; 2.00A {Homo sapiens} PDB:
3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B
3ew3_B 3npz_B 1f6f_B 2lfg_A
Length = 210
Score = 37.8 bits (87), Expect = 9e-04
Identities = 18/110 (16%), Positives = 31/110 (28%), Gaps = 6/110 (5%)
Query: 17 DIYYQVTILSPPGVP-NILLQSTTTHSISILWKPSY----DGGAIITHYIVSYRDRTEDW 71
D+ Y V P + + + I W P G Y + +
Sbjct: 96 DVTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAE 155
Query: 72 QSVHVDAEYREFTLTQLKCGTHYKINIKLVNSIGE-SKPSKTIAASTKGE 120
+H + EF + L G Y + ++ G S S +
Sbjct: 156 WEIHFAGQQTEFKILSLHPGQKYLVQVRCKPDHGYWSAWSPATFIQIPSD 205
Score = 33.9 bits (77), Expect = 0.020
Identities = 33/190 (17%), Positives = 55/190 (28%), Gaps = 52/190 (27%)
Query: 25 LSPPGVP-NILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDRTEDWQSVHVDAEYRE- 82
+ PPG P +S + + W+P DGG + T+Y ++Y E D
Sbjct: 1 MLPPGKPEIFKCRSPNKETFTCWWRPGTDGG-LPTNYSLTYHREGETLMHECPDYITGGP 59
Query: 83 ----FTLTQLKCGTHYKINIKLVNSIGESK----------------PSKTIAASTKGEDQ 122
F Y + + N +G S P + + ED+
Sbjct: 60 NSCHFGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPEDR 119
Query: 123 TDWINI----PLSNLDEALEMPL-------------------------VIENLLPATRYE 153
++ I P + L I +L P +Y
Sbjct: 120 KPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHFAGQQTEFKILSLHPGQKYL 179
Query: 154 LTISAKNDAG 163
+ + K D G
Sbjct: 180 VQVRCKPDHG 189
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 37.6 bits (86), Expect = 0.001
Identities = 18/108 (16%), Positives = 34/108 (31%), Gaps = 10/108 (9%)
Query: 20 YQVTILSPPGVPNILLQ----STTTHSISILWKPSYDGGAIITHYIVSYRDRTEDWQSV- 74
V L PP + + + + W+P G I + ++ + +
Sbjct: 198 MDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQRGEASWAL 257
Query: 75 --HVDAEYREFTLTQLKCGTHYKINI--KLVNSIGE-SKPSKTIAAST 117
+ E ++ L L T Y + I G S S ++ T
Sbjct: 258 VGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELRT 305
Score = 33.4 bits (75), Expect = 0.033
Identities = 28/223 (12%), Positives = 55/223 (24%), Gaps = 65/223 (29%)
Query: 3 GNYTCLADNIFGKDDIYY-QVTILSPPGVPNIL--LQSTTTHSISILWKPSYDGGAIITH 59
+C + + ++ PP +P+ L L + TT S+ W+P + + T
Sbjct: 73 AFLSCSLNWGNSLQILDQVELRAGYPPAIPHNLSCLMNLTTSSLICQWEPGPETH-LPTS 131
Query: 60 YIVSYRDRTED--WQSVHVDAEYRE-------FTLTQLKCGTHYKINIKLVNSIGESKPS 110
+ + + Q + + L + I ++ N++G S
Sbjct: 132 FTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSP 191
Query: 111 KTIAAST-------------------------------------------------KGED 121
+
Sbjct: 192 QLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQRG 251
Query: 122 QTDWINIPLSNLDEALEMPLVIENLLPATRYELTISAKNDAGS 164
+ W + L+ + LLPAT Y L I
Sbjct: 252 EASWALVGPLPLEAL---QYELCGLLPATAYTLQIRCIRWPLP 291
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 37.5 bits (87), Expect = 0.001
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPP 28
G Y C A+NI G+D ++ I + P
Sbjct: 270 GTYECEAENIKGRDTYQGRIIIHAQP 295
Score = 27.9 bits (62), Expect = 2.0
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILS 26
G Y C+A+N G ++T+ +
Sbjct: 359 GMYQCVAENKHGTVYASAELTVQA 382
Score = 26.0 bits (57), Expect = 8.4
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVPNILLQSTTTHSISILWKPSYD 52
GNY+C A + ++ S ++ + ++ SI K D
Sbjct: 171 GNYSCFATSHIDFI----TKSVFSKFSQLSLAAEDARQYAPSIKAKFPAD 216
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 37.5 bits (87), Expect = 0.002
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPP 28
G+Y C+A+N GK+ Q+T + P
Sbjct: 271 GSYECVAENSRGKNVAKGQLTFYAQP 296
Score = 28.6 bits (64), Expect = 1.4
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILS 26
G Y C+A+N G ++++++
Sbjct: 360 GMYQCVAENKHGVIFSSAELSVIA 383
Score = 25.9 bits (57), Expect = 9.8
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 2 VGNYTCLADNIFGKDDIYYQVTILSPPGVPNI 33
VGNYTC+ N + T L +
Sbjct: 169 VGNYTCVVTNTVTNHKVLGPPTPLILRNDGVM 200
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 37.5 bits (87), Expect = 0.002
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPP 28
G YTC+ ++T+L PP
Sbjct: 288 GTYTCVVTYKNENISASAELTVLVPP 313
Score = 28.3 bits (63), Expect = 1.8
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 3 GNYTCLADNIFGKDDIY-YQVTILSPPGVP 31
G Y C A N +V ILS PG+
Sbjct: 190 GVYRCSARNPASTRTGNEAEVRILSDPGLH 219
Score = 27.9 bits (62), Expect = 2.1
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSP 27
G Y C+A+N G Q+ + P
Sbjct: 378 GFYQCVAENEAGNAQSSAQLIVPKP 402
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 37.5 bits (87), Expect = 0.002
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPP 28
G Y CLA N G V + + P
Sbjct: 288 GEYFCLASNKMGSIRHTISVRVKAAP 313
Score = 27.1 bits (60), Expect = 4.6
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILS 26
Y C N G V++L
Sbjct: 380 AVYQCNTSNEHGYLLANAFVSVLD 403
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 35.8 bits (83), Expect = 0.002
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPG 29
G Y KD ++ ++ G
Sbjct: 92 GEYELSVQIENMKDTATIRIRVVEKAG 118
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 36.8 bits (85), Expect = 0.002
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVPNILLQSTTTHSI 43
G Y C A N G + + +++ P L+++ S+
Sbjct: 195 GEYLCRATNFIGVAEKAFWLSVHGPRAAEEELVEADEAGSV 235
Score = 31.8 bits (72), Expect = 0.11
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 3 GNYTCLADNIFGKDDIYYQVTIL-SPPGVPNILLQ 36
GNYTC+ +N FG Y + +L P P +
Sbjct: 85 GNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAG 119
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 36.8 bits (85), Expect = 0.003
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPP 28
G Y C+ +N G + + +T+ +P
Sbjct: 283 GKYLCVVNNSVGGESVETVLTVTAPL 308
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 36.7 bits (84), Expect = 0.003
Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVPNIL---LQSTTTHSISILWK 48
GN T + GK + ++ + L + T+ + + K
Sbjct: 270 GNLTLALEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLK 318
Score = 28.6 bits (63), Expect = 1.4
Identities = 6/35 (17%), Positives = 14/35 (40%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVPNILLQS 37
G +TC K + + +L+ +I+ +
Sbjct: 155 GTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKK 189
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 35.0 bits (81), Expect = 0.003
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVP 31
G YT L +N G +T++ P P
Sbjct: 76 GCYTLLVENKLGSRQAQVNLTVVDKPDPP 104
>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic
receptor, signal transduction cytokine; HET: NAG; 2.80A
{Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A
1gcf_A
Length = 215
Score = 35.6 bits (81), Expect = 0.005
Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 7/98 (7%)
Query: 20 YQVTILSPPGVPNILLQ----STTTHSISILWKPSYDGGAIITHYIVSYRDR--TEDWQS 73
V L PP + + + S + + WKP + + Y+ + +W
Sbjct: 104 MDVVKLEPPMLQALDIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTL 163
Query: 74 V-HVDAEYREFTLTQLKCGTHYKINIKLVNSIGESKPS 110
V H+ + +F L L Y + ++ + S S
Sbjct: 164 VFHLPSSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWS 201
Score = 32.1 bits (72), Expect = 0.081
Identities = 27/195 (13%), Positives = 46/195 (23%), Gaps = 58/195 (29%)
Query: 27 PPGVPNIL--LQSTTTHSISILWKPSYDGGAIITHYIVSYRDRTEDWQ---------SVH 75
PP P+ L L TT+S+ W+P + + T +I+ D Q
Sbjct: 4 PPASPSNLSCLMHLTTNSLVCQWEPGPETH-LPTSFILKSFRSRADCQYQGDTIPDCVAK 62
Query: 76 VDAEYREFTLTQLKCGTHYKINIKLVNSIGESK-----------------------PSKT 112
L + I ++ N +G S+
Sbjct: 63 KRQNNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIGPD 122
Query: 113 IAASTKGEDQTDWINIPLSNLDEAL-----------------------EMPLVIENLLPA 149
+ + G W S E + + L A
Sbjct: 123 VVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQA 182
Query: 150 TRYELTISAKNDAGS 164
Y L + +
Sbjct: 183 PVYTLQMRCIRSSLP 197
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 35.3 bits (81), Expect = 0.006
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVP 31
G Y C N G+ + +T+L P
Sbjct: 198 GEYICKVSNYIGQANQSAWLTVLPKQQAP 226
Score = 33.3 bits (76), Expect = 0.034
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVPNIL 34
GNYTC+ +N +G + Y + ++ IL
Sbjct: 89 GNYTCVVENEYGSINHTYHLDVVERSRHRPIL 120
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 35.5 bits (81), Expect = 0.008
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVPNI 33
G YTC A ++ G + I N+
Sbjct: 733 GLYTCQACSVLGCAKVEAFFIIEGAQEKTNL 763
Score = 34.0 bits (77), Expect = 0.024
Identities = 8/39 (20%), Positives = 12/39 (30%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVPNILLQSTTTH 41
G Y C IY V P + ++ Q +
Sbjct: 99 GAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVY 137
Score = 32.4 bits (73), Expect = 0.080
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVP 31
G YTC A + V + P V
Sbjct: 303 GLYTCAASSGLMTKKNSTFVRVHEKPFVA 331
Score = 32.0 bits (72), Expect = 0.11
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPP 28
Y C A N G+ + + P
Sbjct: 526 ALYKCEAVNKVGRGERVISFHVTRGP 551
Score = 31.3 bits (70), Expect = 0.21
Identities = 5/42 (11%), Positives = 14/42 (33%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVPNILLQSTTTHSIS 44
G C A + ++ + +++L + +S
Sbjct: 196 GMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELS 237
Score = 30.5 bits (68), Expect = 0.41
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 3 GNYTCLADNIFGKD--DIYYQVTILSPPGVPNILLQSTTTH 41
GNYT + N K+ + + PP + L S
Sbjct: 394 GNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDS 434
Score = 29.0 bits (64), Expect = 1.3
Identities = 9/43 (20%), Positives = 15/43 (34%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVPNILLQSTTTHSISI 45
G+Y CLA + K + V + + + SI
Sbjct: 638 GDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSI 680
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 35.2 bits (81), Expect = 0.009
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPP 28
G Y C A N G+D+ + +
Sbjct: 261 GPYVCRATNKAGEDEKQAFLQVFVQH 286
Score = 30.9 bits (70), Expect = 0.22
Identities = 6/27 (22%), Positives = 9/27 (33%), Gaps = 1/27 (3%)
Query: 3 GNYTCLADNIFGKDD-IYYQVTILSPP 28
G Y C A + G+ + I
Sbjct: 73 GIYRCQATDAKGQTQEATVVLEIYQKL 99
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 35.3 bits (81), Expect = 0.010
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPP 28
G Y C+ +N G + + +T+ +P
Sbjct: 319 GKYLCVVNNSVGGESVETVLTVTAPL 344
Score = 33.8 bits (77), Expect = 0.030
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPP 28
GN+TC A N+ G + + PP
Sbjct: 690 GNFTCHARNLAGHQQFTTPLNVYVPP 715
Score = 33.8 bits (77), Expect = 0.035
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPP 28
G Y C+A + G + ++ + P
Sbjct: 503 GLYKCIAKSKVGVAEHSAKLNVYGLP 528
Score = 33.0 bits (75), Expect = 0.067
Identities = 8/52 (15%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
Query: 3 GNYTCLADNIFGKDD-IYYQVTILSPPGVPNILLQSTTT---HSISILWKPS 50
YTC+A N G +V ++ P + + +++
Sbjct: 593 ATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVP 644
Score = 28.4 bits (63), Expect = 1.6
Identities = 6/32 (18%), Positives = 10/32 (31%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVPNIL 34
G Y C N + ++ + P I
Sbjct: 402 GMYQCFVRNDRESAEASAELKLGGRFDPPVIR 433
Score = 26.8 bits (59), Expect = 5.2
Identities = 7/43 (16%), Positives = 12/43 (27%), Gaps = 1/43 (2%)
Query: 2 VGNYTCLADNIFGKDDIYYQVTILSPPGVPNILLQSTTTHSIS 44
+ + +A G + G P L + T S
Sbjct: 11 LMLFAAVALIACGSQTLAANPPDADQKG-PVFLKEPTNRIDFS 52
Score = 26.8 bits (59), Expect = 5.5
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
Query: 141 LVIENLLPATRYELTISAKNDAGSTNKNYVFATLSVN 177
L IE + + T A+N AG L+V
Sbjct: 679 LTIEAVEASHAGNFTCHARNLAGHQQFT---TPLNVY 712
Score = 26.1 bits (57), Expect = 10.0
Identities = 6/27 (22%), Positives = 10/27 (37%), Gaps = 1/27 (3%)
Query: 3 GNYTCLADNIFGKDDI-YYQVTILSPP 28
G Y C A N G +++ +
Sbjct: 786 GYYLCEAINGIGSGLSAVIMISVQAHH 812
>1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha;
cytokine, leukemia inhibitory factor, cytokine
receptor; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 109
Score = 33.4 bits (76), Expect = 0.011
Identities = 12/75 (16%), Positives = 22/75 (29%), Gaps = 3/75 (4%)
Query: 27 PPGVPNILLQSTTTHSISILWKP---SYDGGAIITHYIVSYRDRTEDWQSVHVDAEYREF 83
PP + + + W+ D + + + YR D +
Sbjct: 10 PPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELSNGTAH 69
Query: 84 TLTQLKCGTHYKINI 98
T+T G Y I +
Sbjct: 70 TITDAYAGKEYIIQV 84
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 34.8 bits (80), Expect = 0.011
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVP 31
NYTC+A + G + Q+T+ S P
Sbjct: 268 ANYTCVAMSSLGVIEAVAQITVKSLPKAG 296
Score = 31.3 bits (71), Expect = 0.15
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVPNIL 34
Y C+A N G+ ++ ++T+L +P+
Sbjct: 77 NVYECVAQNSVGEITVHAKLTVLREDQLPSGF 108
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 35.2 bits (81), Expect = 0.012
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPP 28
G Y C A N G D +T+ +PP
Sbjct: 453 GEYQCKASNDVGSDTCVGSITLKAPP 478
Score = 34.4 bits (79), Expect = 0.017
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPP 28
G YTC A N+ GKD Q+ + PP
Sbjct: 266 GQYTCYASNVAGKDSCSAQLGVQEPP 291
Score = 33.6 bits (77), Expect = 0.034
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPP 28
G+YTC A N G + + PP
Sbjct: 360 GDYTCEAHNAAGSASSSTSLKVKEPP 385
Score = 32.1 bits (73), Expect = 0.12
Identities = 9/38 (23%), Positives = 14/38 (36%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVPNILLQSTTT 40
G Y C A N G ++T+ P L+ +
Sbjct: 170 GQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSV 207
Score = 27.8 bits (62), Expect = 2.7
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 3 GNYTCLADNIFGKDDIYYQVTIL 25
G YTC N G + + +++L
Sbjct: 547 GKYTCQIKNEAGTQECFATLSVL 569
Score = 26.3 bits (58), Expect = 8.2
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVPNI 33
G YTC A+N G + I P+
Sbjct: 74 GEYTCKAENSVGAVASSAVLVIKERKLPPSF 104
>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R,
cytokine, glycoprotein, IM response, membrane,
phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens}
PDB: 3bpn_C*
Length = 314
Score = 34.9 bits (79), Expect = 0.012
Identities = 13/97 (13%), Positives = 27/97 (27%), Gaps = 14/97 (14%)
Query: 16 DDIYYQVTILSPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDRTEDWQSVH 75
+T P P+I S + + W+ + + Y V + + +V
Sbjct: 188 SFNIVPLTSRVKPDPPHIKNLSFHNDDLYVQWENPQNFISRCLFYEVEVNNSQTETHNVF 247
Query: 76 VDAEYR--------------EFTLTQLKCGTHYKINI 98
E + F + + T + I
Sbjct: 248 YVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRI 284
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 34.7 bits (79), Expect = 0.012
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPP 28
GNYT LA N FG+ + P
Sbjct: 322 GNYTLLAANPFGQASASIMAAFMDNP 347
Score = 32.0 bits (72), Expect = 0.093
Identities = 14/85 (16%), Positives = 24/85 (28%), Gaps = 12/85 (14%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVPNILLQSTTTHSI----------SILWKPSYD 52
N TC A+N G+ ++ QV + P V I S+ W ++
Sbjct: 226 KNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRW--LFN 283
Query: 53 GGAIITHYIVSYRDRTEDWQSVHVD 77
G + +
Sbjct: 284 GSVLNETSFIFTEFLEPAANETVRH 308
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy,
decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo
sapiens} PDB: 3lb6_D*
Length = 380
Score = 34.8 bits (79), Expect = 0.013
Identities = 12/81 (14%), Positives = 24/81 (29%), Gaps = 5/81 (6%)
Query: 20 YQVTILSPPGVPNILLQSTTTHSISILWK-PSYDGGAIITHYIVSYRDRTEDWQSVHVDA 78
+ PP + ++ I + W P A Y + R+ + V+
Sbjct: 233 QNIVKPLPPV--YLTFTRESSCEIKLKWSIPLGPIPARCFDYEIEIREDDTTLVTATVEN 290
Query: 79 EYREFTLTQLKCGTHYKINIK 99
E +TL ++
Sbjct: 291 E--TYTLKTTNETRQLCFVVR 309
Score = 32.9 bits (74), Expect = 0.059
Identities = 16/102 (15%), Positives = 28/102 (27%), Gaps = 6/102 (5%)
Query: 5 YTCLADNIFGKDDIYYQVTILSPPGVPNILLQSTTTHS-ISILWKPSYD---GGAIITHY 60
YT L FG ++PP + + + + W+P Y
Sbjct: 12 YTFLISTTFGCTSSSDTEIKVNPP--QDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVEY 69
Query: 61 IVSYRDRTEDWQSVHVDAEYREFTLTQLKCGTHYKINIKLVN 102
+ YR+ + + L G I+ L
Sbjct: 70 ELKYRNIGSETWKTIITKNLHYKDGFDLNKGIEAXIHTLLPW 111
Score = 31.3 bits (70), Expect = 0.19
Identities = 11/94 (11%), Positives = 22/94 (23%), Gaps = 8/94 (8%)
Query: 27 PPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDRTEDW----QSVHVDAEYRE 82
V ++ + WKP + T+Y + Y D
Sbjct: 137 ETXVQDMDCVYYNWQYLLCSWKPGIGVL-LDTNYNLFYWYEGLDHALQCVDYIKADGQNI 195
Query: 83 ---FTLTQLKCGTHYKINIKLVNSIGESKPSKTI 113
F + + I + + + S
Sbjct: 196 GCRFPYLEASDYKDFYICVNGSSENKPIRSSYFT 229
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 34.7 bits (79), Expect = 0.015
Identities = 20/114 (17%), Positives = 35/114 (30%), Gaps = 13/114 (11%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVPNILLQSTTTH---------SISILWKPSYDG 53
G Y A+N + + + I P +L +++ + S WK D
Sbjct: 391 GEYIFHAENDDAQFTKMFTLNIRRK---PQVLAEASASQASCFSDGYPLPSWTWKKCSDK 447
Query: 54 GAIITHYIVSYRDRTEDWQSVHVDAEYREFTLTQLKCGTHYKINIKLVNSIGES 107
T I + + V TL + + + NS+G S
Sbjct: 448 SPNCTEEITEGVWNRKANRKVFGQWVS-SSTLNMSEAIKGFLVKCCAYNSLGTS 500
Score = 31.2 bits (70), Expect = 0.23
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 2 VGNYTCLADNIFGKDDIYYQVTILSPP 28
G Y + I + V+I +
Sbjct: 115 AGEYLLFIQSEATNYTILFTVSIRNTL 141
Score = 29.7 bits (66), Expect = 0.71
Identities = 7/41 (17%), Positives = 9/41 (21%), Gaps = 3/41 (7%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVPNILLQSTTTHSI 43
C A N G + P + T H
Sbjct: 487 FLVKCCAYNSLGTSCETILLNSPGP---FPFIQDGGTKHHH 524
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1,
BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 32.7 bits (75), Expect = 0.015
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPP 28
G Y C+ + G D Y+ V +
Sbjct: 67 GLYACVTSSPSGSDTTYFSVNVSDAL 92
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 34.3 bits (79), Expect = 0.015
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPP 28
G YTC A N+ GKD Q+ + PP
Sbjct: 74 GQYTCYASNVAGKDSCSAQLGVQEPP 99
Score = 32.8 bits (75), Expect = 0.051
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPP 28
G+YTC A N G + + PP
Sbjct: 168 GDYTCEAHNAAGSASSSTSLKVKEPP 193
Score = 28.2 bits (63), Expect = 1.8
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 3 GNYTCLADNIFGKDDIYYQVTI 24
G Y C A N G +T+
Sbjct: 261 GEYQCKASNDVGSYTCVGSITL 282
>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor,
fibronectin type 3 fold, membrane and SOL glycosylation,
immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens}
PDB: 3di3_B* 3di2_B*
Length = 223
Score = 34.0 bits (77), Expect = 0.019
Identities = 12/80 (15%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Query: 21 QVTILSPPGVPNILLQSTTTHSISILWKPSY--DGGAIITHYIVSYRDRTEDWQSVHVDA 78
+ P +++ + + + + S+ + + V+YR ++ + HV+
Sbjct: 109 TIVKPEAPFDLSVVYREGA-NDFVVTFNTSHLQKKYVKVLMHDVAYRQEKDENKWTHVNL 167
Query: 79 EYREFTLT--QLKCGTHYKI 96
+ TL +L+ Y+I
Sbjct: 168 SSTKLTLLQRKLQPAAMYEI 187
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 34.2 bits (78), Expect = 0.020
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGV 30
GNY+C+A N+ GK ++ G
Sbjct: 258 GNYSCVASNVQGKHSTSMFFRVVESAGN 285
Score = 28.4 bits (63), Expect = 1.3
Identities = 4/26 (15%), Positives = 6/26 (23%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPP 28
G Y C + + P
Sbjct: 64 GTYRCTEPGDPLGGSAAIHLYVKDPA 89
>3s98_A Interferon alpha/beta receptor 1; human, type I interferons,
receptor chain, ifnar1, fibronect III, type I interferon
receptor chain; HET: NAG; 1.90A {Homo sapiens}
Length = 306
Score = 34.1 bits (77), Expect = 0.021
Identities = 12/113 (10%), Positives = 37/113 (32%), Gaps = 8/113 (7%)
Query: 18 IYYQVTILSPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYR-----DRTEDWQ 72
+ T+ + P + S + + W +Y ++ ++ + W+
Sbjct: 193 HCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWK 252
Query: 73 SVHV--DAEYREFTLTQ-LKCGTHYKINIKLVNSIGESKPSKTIAASTKGEDQ 122
+ + + + Q + Y + ++ + S S+ I T+ +
Sbjct: 253 QIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQAF 305
Score = 28.7 bits (63), Expect = 1.1
Identities = 16/119 (13%), Positives = 41/119 (34%), Gaps = 8/119 (6%)
Query: 25 LSPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDRTEDWQSV----HVDAEY 80
L P + + + I + W S + +T + ++W + ++ +
Sbjct: 4 LKSP--QKVEVDIIDDNFI-LRWNRSDESVGNVTFSFDYQKTGMDNWIKLSGCQNITSTK 60
Query: 81 REFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAASTKGEDQTDWINIPLSNLDEALEM 139
F+ +L K+ I+ S + + + + Q + L D+A+ +
Sbjct: 61 CNFSSLKLNVYEEIKLRIRAEKE-NTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVI 118
>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex
(hormone-receptor) compl; 2.10A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B
2aew_A
Length = 236
Score = 33.6 bits (76), Expect = 0.022
Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 7/87 (8%)
Query: 17 DIYYQVTILSPPGVPNILLQSTTT---HSISILWKP----SYDGGAIITHYIVSYRDRTE 69
+ V P + LL + T I + W+ G ++ Y + Y++ E
Sbjct: 124 SVDEIVQPDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNE 183
Query: 70 DWQSVHVDAEYREFTLTQLKCGTHYKI 96
+ + LK Y++
Sbjct: 184 TKWKMMDPILTTSVPVYSLKVDKEYEV 210
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 33.9 bits (77), Expect = 0.025
Identities = 5/28 (17%), Positives = 9/28 (32%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGV 30
G Y + I + V+I +
Sbjct: 116 GEYLLFIQSEATNYTILFTVSIRNTLLY 143
Score = 32.7 bits (74), Expect = 0.057
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPP 28
G Y A+N + + + I S
Sbjct: 391 GEYIFHAENDDAQFTKMFTLNIRSGT 416
Score = 26.6 bits (58), Expect = 6.3
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 3/26 (11%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPP 28
G YTC + + VTI+
Sbjct: 303 GYYTCSSSKHPSQSA---LVTIVEKG 325
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 33.2 bits (76), Expect = 0.026
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVPNILLQSTTTH 41
G Y C A N G+D+ + + P + I L++ TT+
Sbjct: 71 GPYVCRATNKAGEDEKQAFLQVFVQPHI--IQLKNETTY 107
Score = 27.5 bits (61), Expect = 2.3
Identities = 6/22 (27%), Positives = 8/22 (36%)
Query: 3 GNYTCLADNIFGKDDIYYQVTI 24
G Y C A + G + I
Sbjct: 170 GRYDCEAASRIGGHQKSMYLDI 191
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 33.4 bits (76), Expect = 0.031
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPP 28
G YTCLA N G + +L
Sbjct: 304 GEYTCLAGNSIGFSHHSAWLVVLPAE 329
Score = 33.4 bits (76), Expect = 0.035
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVPNIL 34
GNYTC+ +N FG Y + +L IL
Sbjct: 193 GNYTCVVENKFGSIRQTYTLDVLERSPHRPIL 224
Score = 29.2 bits (65), Expect = 0.82
Identities = 5/48 (10%), Positives = 11/48 (22%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVPNILLQSTTTHSISILWKPS 50
G Y+C + +P + + + P
Sbjct: 74 GAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPY 121
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 31.9 bits (73), Expect = 0.036
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVPNI 33
G YTC A ++ G + I N+
Sbjct: 77 GLYTCQACSVLGCAKVEAFFIIEGAQEKTNL 107
>1y6k_R Interleukin-10 receptor alpha chain; helix bundle, receptor
complex, immune system; 2.52A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1j7v_R* 1lqs_R 1y6m_R 1y6n_R
Length = 214
Score = 32.8 bits (74), Expect = 0.038
Identities = 13/106 (12%), Positives = 27/106 (25%), Gaps = 13/106 (12%)
Query: 18 IYYQVTILSPPGVPNILLQSTTTHSISILWKPSYDGGAIIT---------HYIVSYRDRT 68
L+ V L I A T Y ++ R
Sbjct: 97 FSVDEVTLTVGSVN--LEIHNGFILGKIQLPRPKMAPAQDTYESIFSHFREYEIAIRKVP 154
Query: 69 EDWQSVHVDAEYREFTLTQLKCGTHY--KINIKLVNSIGESKPSKT 112
+ H ++ +F+L + ++ + + + SK
Sbjct: 155 GQFTFTHKKVKHEQFSLLTSGEVGEFCVQVKPSVASRSNKGMWSKE 200
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 32.9 bits (75), Expect = 0.043
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 3 GNYTCLADNIFGKDD-IYYQVTILSPPGVPN 32
GNY C+A N+ G + Y ++ + +
Sbjct: 183 GNYKCIAQNLVGTRESSYAKLIVQVKAAAHH 213
Score = 26.4 bits (58), Expect = 6.7
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 3 GNYTCLADNIFGKD---DIYYQVTILSP 27
G Y C+A N G+ Q+ +L
Sbjct: 82 GEYWCVAKNRVGQAVSRHASLQIAVLRD 109
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.048
Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 42/145 (28%)
Query: 47 WKPSYDGGAIITHYIVSYRDRTEDWQSVHVDAEY---REFTLTQLKCGTHYKINIKLVNS 103
K +++T + RDR + V A+Y R +L+ +
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRL--YNDNQVFAKYNVSRLQPYLKLR------------QA 143
Query: 104 IGESKPS------------KTI-AAST--------KGEDQTDWINIPLSNLDEALEMPLV 142
+ E +P+ KT A K + + W+N+ N E + L
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML- 202
Query: 143 IENLLPATRYELTISAKNDAGSTNK 167
+ LL + + ++++D S K
Sbjct: 203 -QKLL--YQIDPNWTSRSDHSSNIK 224
Score = 32.5 bits (73), Expect = 0.083
Identities = 25/180 (13%), Positives = 59/180 (32%), Gaps = 47/180 (26%)
Query: 17 DIYYQVTILSPPGVPNILLQSTTTHSISILW-KPSYDGGAIITHYIVSY----RDRTEDW 71
++ ++++ PP +I T +S++W ++ + + Y + E
Sbjct: 373 KMFDRLSVF-PPSA-HI-----PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425
Query: 72 QSVHVDAEYREFTLTQLKCGTHYKINIKLVNS--IGESKPSKTIAAST------------ 117
S+ + Y E ++K Y ++ +V+ I ++ S +
Sbjct: 426 ISIP--SIYLEL---KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480
Query: 118 -KGEDQTD-------------WINIPLSNLDEALEMPLVIENLLPATR-YELTISAKNDA 162
K + + ++ + + A I N L + Y+ I ND
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC-DNDP 539
>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex;
HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1
Length = 247
Score = 32.9 bits (74), Expect = 0.050
Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 6/79 (7%)
Query: 19 YYQVTILSPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYR-DRTEDWQSVHVD 77
+ I P N+ L + + + W + ++V YR D W VD
Sbjct: 131 LQNLVIPWAP--ENLTLHKLSESQLELNWNNRFL--NHCLEHLVQYRTDWDHSWTEQSVD 186
Query: 78 AEYREFTLTQLKCGTHYKI 96
++ F+L + Y
Sbjct: 187 YRHK-FSLPSVDGQKRYTF 204
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 32.7 bits (74), Expect = 0.050
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSP 27
G Y C A + G+ V +LSP
Sbjct: 241 GTYLCRARSTQGEVTREVTVNVLSP 265
Score = 26.9 bits (59), Expect = 4.2
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVPNILLQSTT 39
TC + VTI S P PN++L
Sbjct: 74 QRLTCAVILGNQSQETLQTVTIYSFP-APNVILTKPE 109
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 33.0 bits (75), Expect = 0.051
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 3 GNYTCLADNIFGKDDIY-YQVTILSPP 28
G YTC DN GK + ++T++S P
Sbjct: 283 GVYTCEVDNGVGKPQKHSLKLTVVSAP 309
Score = 26.4 bits (58), Expect = 7.5
Identities = 6/38 (15%), Positives = 12/38 (31%), Gaps = 2/38 (5%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVPNILLQSTTT 40
G+Y C A+ G +V + ++
Sbjct: 75 GHYQCFAETPAGV--ASSRVISFRKTYLIASPAKTHEK 110
Score = 26.0 bits (57), Expect = 8.2
Identities = 7/22 (31%), Positives = 8/22 (36%)
Query: 3 GNYTCLADNIFGKDDIYYQVTI 24
G Y C A N G V +
Sbjct: 373 GYYGCRATNEHGDKYFETLVQV 394
>2b5i_C Cytokine receptor common gamma chain; four-helix bundle,
fibronectin domain, cytokine-cytokine REC complex; HET:
NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB:
3bpl_C* 3qb7_C* 3qaz_C*
Length = 199
Score = 32.4 bits (73), Expect = 0.057
Identities = 11/78 (14%), Positives = 25/78 (32%), Gaps = 4/78 (5%)
Query: 19 YYQVTILSPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDRTEDWQSVHVDA 78
+ I P N+ L + + + W + + ++V YR + +
Sbjct: 93 LQNLVIPWAP--ENLTLHKLSESQLELNWNNRFLNHCLE--HLVQYRTDWDHSWTEQSVD 148
Query: 79 EYREFTLTQLKCGTHYKI 96
+F+L + Y
Sbjct: 149 YRHKFSLPSVDGQKRYTF 166
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 32.2 bits (73), Expect = 0.059
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 3 GNYTCLADNIFGKD--DIYYQVTILSPPGVPNILLQSTTT 40
G YTC+ G++ ++ +T+L PP P I + S+ T
Sbjct: 78 GEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVT 117
Score = 29.6 bits (66), Expect = 0.49
Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 2/31 (6%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVPNI 33
G Y C A N +G + + N+
Sbjct: 182 GEYYCQAQNGYGTAMRSEAAHMDAVE--LNV 210
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 32.4 bits (74), Expect = 0.061
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVP 31
G YTC+A N G+ + ++ + + P
Sbjct: 76 GVYTCIATNEVGEVETSSKLLLQATPQFH 104
Score = 28.1 bits (63), Expect = 1.4
Identities = 8/22 (36%), Positives = 9/22 (40%)
Query: 3 GNYTCLADNIFGKDDIYYQVTI 24
G Y N+FG D V I
Sbjct: 173 GKYKVQLSNVFGTVDAILDVEI 194
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 33.0 bits (75), Expect = 0.061
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVPNILLQSTTTHSI 43
G YTC A+N TI +P + S + +
Sbjct: 439 GLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPV 479
Score = 32.2 bits (73), Expect = 0.098
Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 3 GNYTCLADNIFGKDD-IYYQVTILSPPGVPNILLQSTT 39
Y C N + + +L P P I ++
Sbjct: 533 RAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSS 570
Score = 30.7 bits (69), Expect = 0.35
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 3 GNYTCLADNIFGKDDIYYQVTI--LSPPGVPNILLQSTTT 40
G+YTC A N + TI + P P I ++
Sbjct: 261 GSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNP 300
Score = 29.9 bits (67), Expect = 0.58
Identities = 10/38 (26%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 3 GNYTCLADNIFGKDDIY-YQVTILSPPGVPNILLQSTT 39
G Y C N D + +L P P I T
Sbjct: 355 GPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTY 392
Score = 27.2 bits (60), Expect = 4.4
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 3 GNYTCLADNIFGKDDIYYQVTI 24
G Y C N+ + +I
Sbjct: 617 GTYACFVSNLATGRNNSIVKSI 638
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 30.9 bits (70), Expect = 0.063
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 3 GNYTCLADNIFGKDDIYYQVTI 24
G Y C+ + G D Y+ V +
Sbjct: 73 GLYACVTSSPSGSDTTYFSVNV 94
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 32.6 bits (74), Expect = 0.063
Identities = 6/62 (9%), Positives = 21/62 (33%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIV 62
G Y + + GKD ++ + + + + + + + + +G + +
Sbjct: 74 GIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTY 133
Query: 63 SY 64
Sbjct: 134 YV 135
Score = 31.8 bits (72), Expect = 0.11
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSP 27
G Y + N +G + + V++ P
Sbjct: 292 GKYGLVVKNKYGSETSDFTVSVFIP 316
Score = 26.0 bits (57), Expect = 8.7
Identities = 2/47 (4%), Positives = 7/47 (14%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVPNILLQSTTTHSISILWKP 49
G Y + ++ + +
Sbjct: 177 GKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRAR 223
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 32.4 bits (73), Expect = 0.065
Identities = 9/39 (23%), Positives = 11/39 (28%), Gaps = 4/39 (10%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVPNILLQSTTTH 41
G Y C A N G +V I + H
Sbjct: 297 GTYICEATNPIGTRSGQVEVNITEAAALE----HHHHHH 331
Score = 27.8 bits (61), Expect = 2.3
Identities = 3/37 (8%), Positives = 9/37 (24%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVPNILLQSTT 39
+ C+ + + + + P V
Sbjct: 207 QSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNW 243
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 32.2 bits (73), Expect = 0.069
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 3 GNYTCLADNIFGKD--DIYYQVTILSPPGVPNILLQSTTT 40
G YTC+ G ++ ++ +L PP P + + S+ T
Sbjct: 81 GTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSAT 120
Score = 26.8 bits (59), Expect = 3.6
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 3 GNYTCLADNIFGKDDIYYQVTI 24
G Y+C A N +G V +
Sbjct: 184 GEYSCEARNGYGTPMTSNAVRM 205
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 32.3 bits (73), Expect = 0.078
Identities = 7/26 (26%), Positives = 8/26 (30%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPP 28
G C A N GK Y+
Sbjct: 487 GTVECKAYNDVGKTSAYFNFAFKGNN 512
Score = 31.9 bits (72), Expect = 0.13
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPP 28
G YT L N I + V + + P
Sbjct: 388 GTYTFLVSNSDVNAAIAFNVYVNTKP 413
Score = 31.9 bits (72), Expect = 0.13
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVP 31
G + C A+N FG ++ + ++ +
Sbjct: 286 GVFMCYANNTFGSANVTTTLEVVDKGFIN 314
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 32.1 bits (73), Expect = 0.080
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSP 27
G Y + N +G + + V++ P
Sbjct: 187 GKYGLVVKNKYGSETSDFTVSVFIP 211
Score = 26.4 bits (58), Expect = 6.5
Identities = 2/26 (7%), Positives = 6/26 (23%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPP 28
G Y + ++ +
Sbjct: 72 GKYVMELFDGKTGHQKTVDLSGQAYD 97
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 31.8 bits (72), Expect = 0.083
Identities = 7/41 (17%), Positives = 12/41 (29%), Gaps = 2/41 (4%)
Query: 3 GNYTCLADNIFGKD--DIYYQVTILSPPGVPNILLQSTTTH 41
Y + GK+ + + + I P I T
Sbjct: 79 DIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTT 119
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 30.8 bits (70), Expect = 0.092
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPP 28
G Y C A N G+ VT+L PP
Sbjct: 82 GVYVCRARNAAGEAYAAAAVTVLEPP 107
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 31.1 bits (70), Expect = 0.10
Identities = 6/29 (20%), Positives = 9/29 (31%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVP 31
GNY C D + + + G
Sbjct: 88 GNYRCEVTYKDKFDSCSFDLEVHESTGTT 116
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 30.8 bits (70), Expect = 0.11
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPP 28
G YT A N G ++ + + P
Sbjct: 86 GWYTVSAVNEAGVTTCNTRLDVTARP 111
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 31.6 bits (71), Expect = 0.12
Identities = 7/38 (18%), Positives = 13/38 (34%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVPNILLQSTTT 40
G Y C G + + +T+L P + +
Sbjct: 97 GTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEE 134
Score = 31.6 bits (71), Expect = 0.13
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 1 MVGNYTCLADNIFGKDDIYYQVTILSP 27
G Y+C N G D ++ ++ P
Sbjct: 187 YSGTYSCTVQNRVGSDQCMLRLDVVPP 213
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor
complex LIFR LIF, cytokine RE cytokine complex; HET: NAG
FUC MAN; 4.00A {Mus musculus}
Length = 488
Score = 31.9 bits (71), Expect = 0.13
Identities = 22/205 (10%), Positives = 48/205 (23%), Gaps = 53/205 (25%)
Query: 5 YTCLADNIFGKDDIYYQVTILSPPGVP-NILLQSTTTHSISILWKPSYD---GGAIITHY 60
D+++G V PP VP + ++ I W P G T Y
Sbjct: 269 IFITDDDVYGTV-----VFAGYPPDVPQKLSCETHDLKEIICSWNPGRITGLVGPRNTEY 323
Query: 61 IVSYRDRTEDWQSVHVDA---EYREFTLTQLKCGTHYKINIKLVNSIGESKPSKTIAAST 117
+ + ++ E + + + N +G+++ + I +
Sbjct: 324 TLFESISGKSAVFHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQSAVVINVTE 383
Query: 118 -----------------------------------------KGEDQTDWINIPLSNLDEA 136
+ + E
Sbjct: 384 RVAPHDPTSLKVKDINSTVVTFSWYLPGNFTKINLLCQIEICKANSKKEVRNATIRGAED 443
Query: 137 LEMPLVIENLLPATRYELTISAKND 161
+ ++ L P T Y + +
Sbjct: 444 STYHVAVDKLNPYTAYTFRVRCSSK 468
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 31.5 bits (71), Expect = 0.14
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPP 28
G Y+C+A N G ++
Sbjct: 258 GIYSCVASNDVGTRTATMNFQVVESH 283
Score = 28.4 bits (63), Expect = 1.3
Identities = 4/26 (15%), Positives = 6/26 (23%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPP 28
G Y C + + P
Sbjct: 64 GTYRCTELEDPMAGSTTIHLYVKDPA 89
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 31.0 bits (70), Expect = 0.17
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 3 GNYTCLADNIFGKDDIYY-QVTILSPPGVPNILLQSTTTHSISILWKPS 50
G Y C +N F + + Q+ + P + + + I +P+
Sbjct: 78 GFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPT 126
Score = 28.3 bits (63), Expect = 1.5
Identities = 8/40 (20%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 3 GNYTCLADNIFGKDD-IYYQVTILSPPGVPNILLQSTTTH 41
G Y C N D ++ I + + + TT
Sbjct: 178 GTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPDNKEQTTD 217
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 30.9 bits (69), Expect = 0.18
Identities = 7/26 (26%), Positives = 9/26 (34%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPP 28
G YTC A + V + P
Sbjct: 184 GLYTCAASSGLMTKKNSTFVRVHEDP 209
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 31.4 bits (70), Expect = 0.18
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSP 27
G Y C A + G+ V +LSP
Sbjct: 426 GTYLCRARSTQGEVTREVTVNVLSP 450
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 31.0 bits (70), Expect = 0.20
Identities = 7/38 (18%), Positives = 10/38 (26%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVPNILLQSTTT 40
G Y C VT+ P + T+
Sbjct: 144 GTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSP 181
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 31.0 bits (70), Expect = 0.22
Identities = 5/30 (16%), Positives = 12/30 (40%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVPN 32
G YTC A + + ++ + + +
Sbjct: 314 GVYTCYAMGETFNETLSVELKVYNFTLHGH 343
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 30.5 bits (69), Expect = 0.22
Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 3 GNYTCLADNIFGKDD-IYYQVTILSPP 28
G Y C+ N+ G+ + ++T+L P
Sbjct: 178 GKYVCVGTNMVGERESEVAELTVLERP 204
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 30.5 bits (69), Expect = 0.23
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVPNIL--LQSTT 39
G Y+ A N G+ ++ + + PN + LQS T
Sbjct: 76 GRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMT 114
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 29.3 bits (66), Expect = 0.25
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 3 GNYTCLADNIFGKDDIYYQVTIL 25
GNYTC+ +N +G + Y + ++
Sbjct: 78 GNYTCVVENEYGSINHTYHLDVV 100
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 29.6 bits (67), Expect = 0.27
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVPN 32
G YTC+A N G++ ++ + + P+
Sbjct: 79 GIYTCIATNRAGQNSFSLELVVAAKESGPS 108
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 29.7 bits (66), Expect = 0.28
Identities = 7/26 (26%), Positives = 9/26 (34%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPP 28
G YTC A + V + P
Sbjct: 87 GLYTCAASSGLMTKKNSTFVRVHEKP 112
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 30.2 bits (68), Expect = 0.31
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILS 26
G Y C A+NI GKD ++ + +
Sbjct: 178 GIYECEAENIRGKDKHQARIYVQA 201
Score = 26.8 bits (59), Expect = 4.6
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPP 28
GNY+C + ++ + L P
Sbjct: 79 GNYSCFVSSPSITKSVFSKFIPLIPI 104
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 29.3 bits (66), Expect = 0.34
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPP 28
G YTC+A G+ + +
Sbjct: 75 GRYTCIASTPSGEATWSAYIEVQEFG 100
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 30.0 bits (67), Expect = 0.34
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPP 28
GNY C + ++++ P
Sbjct: 80 GNYLCRMKLGETEVTKQEHLSVVKPL 105
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 30.2 bits (68), Expect = 0.35
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVP 31
Y C+A N G+ + ++T+L +P
Sbjct: 77 AIYECVASNNVGEISVSTRLTVLREDQIP 105
Score = 26.3 bits (58), Expect = 7.0
Identities = 6/27 (22%), Positives = 9/27 (33%), Gaps = 1/27 (3%)
Query: 3 GNYTCLADNIFGKDD-IYYQVTILSPP 28
G Y C+A N G + +
Sbjct: 180 GKYECVATNSAGTRYSAPANLYVRGTK 206
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 29.8 bits (67), Expect = 0.35
Identities = 6/27 (22%), Positives = 7/27 (25%), Gaps = 1/27 (3%)
Query: 3 GNYTCLADNIFGKDDIYY-QVTILSPP 28
G Y C+ G V I
Sbjct: 75 GIYKCVVTAEDGTQSEATVNVKIFQKL 101
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 29.5 bits (66), Expect = 0.37
Identities = 7/26 (26%), Positives = 9/26 (34%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPP 28
Y C A N FG D ++
Sbjct: 90 TIYNCTAWNSFGSDTEIIRLKEQGSE 115
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 30.2 bits (67), Expect = 0.38
Identities = 9/54 (16%), Positives = 16/54 (29%), Gaps = 4/54 (7%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVPNILLQSTTT----HSISILWKPSYD 52
G YT I+ + + + T + IS+ + S D
Sbjct: 158 GVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSED 211
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 29.8 bits (67), Expect = 0.39
Identities = 6/27 (22%), Positives = 9/27 (33%), Gaps = 1/27 (3%)
Query: 3 GNYTCLADNIFGKDDIY-YQVTILSPP 28
G Y C A + G+ + I
Sbjct: 71 GIYRCQATDAKGQTQEATVVLEIYQKL 97
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 28.6 bits (64), Expect = 0.52
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 3 GNYTCLADNIFGKDDIYYQVTI 24
G Y C N+F D + +
Sbjct: 75 GTYVCTGSNMFAMDQGTATLHV 96
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 29.3 bits (66), Expect = 0.54
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 3 GNYTCLADNIFGKD---DIYYQVTILS 26
G Y C+A N G + +V + +
Sbjct: 166 GQYRCVAKNSLGTAYSKLVKLEVEVFA 192
Score = 28.2 bits (63), Expect = 1.3
Identities = 7/27 (25%), Positives = 10/27 (37%), Gaps = 1/27 (3%)
Query: 3 GNYTCLADNIFGKDDIY-YQVTILSPP 28
G Y C A+N G + + P
Sbjct: 75 GIYCCTANNGVGGAVESCGALQVKMKP 101
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 29.7 bits (66), Expect = 0.59
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPP 28
G Y C N D + ++ +
Sbjct: 94 GTYVCTTRNASYCDKMSIELRVFENT 119
Score = 26.6 bits (58), Expect = 5.8
Identities = 6/38 (15%), Positives = 11/38 (28%), Gaps = 6/38 (15%)
Query: 3 GNYTCLADNIFGKD------DIYYQVTILSPPGVPNIL 34
G Y C+ I ++ +P I+
Sbjct: 193 GYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVII 230
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 29.2 bits (65), Expect = 0.59
Identities = 7/41 (17%), Positives = 12/41 (29%), Gaps = 2/41 (4%)
Query: 3 GNYTCLADNIFGKD--DIYYQVTILSPPGVPNILLQSTTTH 41
G Y + G + + IL P I + +
Sbjct: 74 GTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNAT 114
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 29.5 bits (66), Expect = 0.61
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 3 GNYTCLADNIFGKDDIYYQVTI 24
G Y + + GKD ++
Sbjct: 184 GIYEVILKDDRGKDKSRLKLVD 205
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 28.9 bits (64), Expect = 0.65
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 3 GNYTCLADNIFGKDDIYYQVTIL 25
G YT N G+D + V ++
Sbjct: 116 GVYTVTVKNPVGEDQVNLTVKVI 138
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 29.5 bits (65), Expect = 0.65
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPP 28
+Y C A + G+ +V P
Sbjct: 310 RSYVCHARSAKGEVAKAAKVKQKVPA 335
Score = 29.5 bits (65), Expect = 0.79
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVPNI 33
GNYTC+ N + + + ++ N
Sbjct: 92 GNYTCMLRNTTYCSKVAFPLEVVQKDSCFNS 122
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 28.5 bits (64), Expect = 0.66
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVPN 32
GNYT +A N G+ ++ + + P+
Sbjct: 79 GNYTIMAANPQGRISCTGRLMVQAVNSGPS 108
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 29.1 bits (65), Expect = 0.85
Identities = 6/27 (22%), Positives = 7/27 (25%), Gaps = 1/27 (3%)
Query: 3 GNYTCLADNIFGKDDIYY-QVTILSPP 28
G Y C+ G V I
Sbjct: 75 GIYKCVVTAEDGTQSEATVNVKIFQKL 101
Score = 28.7 bits (64), Expect = 1.2
Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 3 GNYTCLADNIFGKDDIY--YQVTILSPP 28
G Y C + + + QV + PP
Sbjct: 168 GTYRCEGRILARGEINFKDIQVIVNVPP 195
Score = 27.5 bits (61), Expect = 2.9
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILS 26
Y C+A+N G+ D + + +
Sbjct: 267 AEYVCIAENKAGEQDASIHLKVFA 290
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 28.9 bits (65), Expect = 0.96
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVPN 32
G YTC+ N G + + +
Sbjct: 410 GMYTCMVSNSVGNTTASATLNVTGTHHHHH 439
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 28.5 bits (64), Expect = 1.0
Identities = 7/34 (20%), Positives = 10/34 (29%), Gaps = 2/34 (5%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGV--PNIL 34
Y A N G + + P + P L
Sbjct: 75 TVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTL 108
Score = 28.1 bits (63), Expect = 1.3
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 3 GNYTCLADNIFGKDDIYYQVTI 24
G Y A N FG D ++ +
Sbjct: 174 GFYVVCAKNRFGIDQKTVELDV 195
>2kxg_A Aspartic protease inhibitor; sqapi, protein, hydrolase inhib; NMR
{Cucurbita maxima}
Length = 95
Score = 27.5 bits (60), Expect = 1.2
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 150 TRYELTISAKNDAGSTNKNY 169
Y L +SAK+ +K Y
Sbjct: 54 NYYNLILSAKHSPHEFSKFY 73
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 28.5 bits (63), Expect = 1.2
Identities = 5/26 (19%), Positives = 8/26 (30%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPP 28
G+Y C+ N I +
Sbjct: 75 GHYYCVVRNSSYCLRIKISAKFVENE 100
Score = 27.0 bits (59), Expect = 4.4
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 3 GNYTCLADNIFGKDDIYYQVTI 24
+TC A N G D Y Q+
Sbjct: 291 HPFTCFAKNTHGIDAAYIQLIY 312
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 28.2 bits (63), Expect = 1.4
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 3 GNYTCLADNIFGKDDIYYQVTIL 25
G Y C A N G+D+ + +
Sbjct: 165 GPYVCRATNKAGEDEKQAFLQVF 187
Score = 26.3 bits (58), Expect = 6.6
Identities = 6/28 (21%), Positives = 9/28 (32%), Gaps = 2/28 (7%)
Query: 3 GNYTCLADNIFGKDDIY--YQVTILSPP 28
G Y C + + V + PP
Sbjct: 70 GIYRCEGRVEARGEIDFRDIIVIVNVPP 97
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 28.3 bits (63), Expect = 1.4
Identities = 6/27 (22%), Positives = 7/27 (25%), Gaps = 1/27 (3%)
Query: 3 GNYTCLADNIFGKDDIY-YQVTILSPP 28
G Y CL V + P
Sbjct: 81 GQYQCLVFLGHQTFVSQPGYVGLEGLP 107
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 27.0 bits (60), Expect = 1.7
Identities = 6/27 (22%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 3 GNYTCLADNIFGKDDI--YYQVTILSP 27
G Y+C+A + ++I+ P
Sbjct: 70 GTYSCVATHSSHGPQESRAVSISIIEP 96
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 27.7 bits (61), Expect = 1.8
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILS 26
G Y C + G D + + S
Sbjct: 160 GQYRCNGTSSKGSDQAIITLRVRS 183
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 27.7 bits (61), Expect = 1.9
Identities = 2/37 (5%), Positives = 5/37 (13%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVPNILLQSTT 39
C + P ++
Sbjct: 64 TQPVCFFRCARRTLQARGLIRTFQRPDRVELMPLPPW 100
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 26.9 bits (60), Expect = 1.9
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 3 GNYTCLADNIFGKDDIYYQVTI 24
GNY N G+D+ ++V +
Sbjct: 71 GNYKLKVKNELGEDEAIFEVIV 92
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 28.2 bits (62), Expect = 2.0
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 3 GNYTCLADNIFGKDDIYYQVTIL 25
G + C A+N FG ++ + ++
Sbjct: 265 GVFMCYANNTFGSANVTTTLKVV 287
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family,
cellular adhesion, ligand-independent DIME mutational
analysis, transferase; HET: EPE; 1.96A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.4
Length = 182
Score = 27.8 bits (62), Expect = 2.0
Identities = 5/27 (18%), Positives = 10/27 (37%), Gaps = 1/27 (3%)
Query: 3 GNYTCLADNIFGKDDIY-YQVTILSPP 28
G Y C ++ + +T+ P
Sbjct: 73 GRYWCQVEDGGETEISQPVWLTVEGVP 99
Score = 25.9 bits (57), Expect = 8.2
Identities = 4/15 (26%), Positives = 7/15 (46%)
Query: 3 GNYTCLADNIFGKDD 17
++C A N+ G
Sbjct: 159 TMFSCEAHNLKGLAS 173
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 26.9 bits (60), Expect = 2.0
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 3 GNYTCLADNIFGKD 16
GNY+ + +N GK
Sbjct: 83 GNYSVVVENSEGKQ 96
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 26.9 bits (60), Expect = 2.1
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 3 GNYTCLADNIFGKD 16
G YT N FG D
Sbjct: 76 GLYTLSLGNEFGSD 89
>1wft_A 1700129L13RIK protein; FN3 domain, similar to HOST cell factor 2,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 123
Score = 27.2 bits (59), Expect = 2.2
Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 5/70 (7%)
Query: 23 TILSPPGVPNILLQSTTTHSISILWKPSYDGGAIITHYIVSYRDRTEDWQSVHVDAEYRE 82
+ S PG P+ + S I + W+P I Y RT + +
Sbjct: 3 SGSSGPGAPSTVRISKNVDGIHLSWEPPTSPSGNILEYSAYLAIRTA-----QMQDNPSQ 57
Query: 83 FTLTQLKCGT 92
++ CG
Sbjct: 58 LVFMRIYCGL 67
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 2.3
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 13/36 (36%)
Query: 87 QLKCGTHYKINIKLVNSIG----ESKPSKTIAASTK 118
LK KL S+ +S P+ I A+ +
Sbjct: 21 ALK---------KLQASLKLYADDSAPALAIKATME 47
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 27.6 bits (61), Expect = 2.3
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 3 GNYTCLADNIFGKDDIYYQVTI 24
G Y + + GKD ++
Sbjct: 289 GIYEVILKDDRGKDKSRLKLVD 310
Score = 27.6 bits (61), Expect = 2.9
Identities = 3/29 (10%), Positives = 7/29 (24%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVP 31
G YT + + + +
Sbjct: 179 GTYTFQLQDGKATNHSTVVLVGDVFKKLQ 207
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 27.8 bits (62), Expect = 2.4
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPP 28
G YTC+ N+ G + + + +
Sbjct: 420 GVYTCMVTNVAGNSNASAYLNVSTAG 445
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 27.2 bits (60), Expect = 2.7
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPP 28
G +TC K + + +L+
Sbjct: 156 GTWTCTVLQNQKKVEFKIDIVVLAFQ 181
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 27.8 bits (62), Expect = 2.8
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILS 26
G Y C+A N G D + + + S
Sbjct: 454 GTYLCIAANAGGNDSMPAHLHVRS 477
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 27.4 bits (60), Expect = 2.9
Identities = 5/22 (22%), Positives = 6/22 (27%)
Query: 3 GNYTCLADNIFGKDDIYYQVTI 24
G YTC + I
Sbjct: 255 GTYTCNVTESVNDHQDEKAINI 276
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic
adhesion, arterial smooth muscle cells; 0.96A {Homo
sapiens}
Length = 99
Score = 26.1 bits (58), Expect = 3.2
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 3 GNYTCLADNIFGKD 16
G YTC A N +G
Sbjct: 75 GFYTCKAVNEYGAR 88
>2c2i_A RV0130; hotdog, hydratase, lyase, structural proteomics in
europe, spine, structural genomics; 1.8A {Mycobacterium
tuberculosis} SCOP: d.38.1.4
Length = 151
Score = 26.8 bits (59), Expect = 3.2
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 61 IVSYRDRTEDWQSVHVDAEY 80
+ + D T D Q +HVD E
Sbjct: 31 VNLFADATGDHQWIHVDPER 50
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 27.4 bits (60), Expect = 3.3
Identities = 4/22 (18%), Positives = 5/22 (22%)
Query: 3 GNYTCLADNIFGKDDIYYQVTI 24
C N G V +
Sbjct: 281 TTLICNVTNALGARQAELTVQV 302
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 27.3 bits (60), Expect = 3.5
Identities = 3/27 (11%), Positives = 10/27 (37%)
Query: 2 VGNYTCLADNIFGKDDIYYQVTILSPP 28
+ C + +++ ++ I P
Sbjct: 187 NEIFYCTFRRLDPEENHTAELVIPELP 213
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 27.1 bits (59), Expect = 3.6
Identities = 5/28 (17%), Positives = 7/28 (25%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGV 30
G Y C + V+ V
Sbjct: 195 GRYDCYVHYDDVRIKNDIVVSRCKILTV 222
Score = 26.3 bits (57), Expect = 6.6
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 3 GNYTCLADNIFGKDDIYYQVTI 24
YTC N + + V +
Sbjct: 307 NTYTCRGHNYYFDKTLTTTVVL 328
>4ffu_A Oxidase; structural genomics, protein structure initiative, NEW
YORK structural genomix research consortium, nysgrc, PS
biology; HET: MSE; 1.80A {Sinorhizobium meliloti}
Length = 176
Score = 26.6 bits (59), Expect = 4.2
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 61 IVSYRDRTEDWQSVHVDAEY 80
V + T D+ H+DAE+
Sbjct: 52 FVVHAGHTGDFFPHHMDAEF 71
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 25.8 bits (57), Expect = 4.3
Identities = 6/27 (22%), Positives = 11/27 (40%), Gaps = 2/27 (7%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPG 29
G+Y D + +V ++S P
Sbjct: 74 GDYVFAPDA--YNVTLPAKVHVISGPS 98
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 26.1 bits (57), Expect = 4.3
Identities = 4/14 (28%), Positives = 5/14 (35%)
Query: 3 GNYTCLADNIFGKD 16
G+Y C D
Sbjct: 85 GSYRCEVSTKDKFD 98
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 26.8 bits (58), Expect = 4.5
Identities = 5/18 (27%), Positives = 7/18 (38%)
Query: 3 GNYTCLADNIFGKDDIYY 20
G Y C +D +Y
Sbjct: 180 GYYVCYPRGSKPEDANFY 197
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 26.4 bits (58), Expect = 4.6
Identities = 6/39 (15%), Positives = 13/39 (33%), Gaps = 2/39 (5%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVPNILLQSTTTH 41
Y + NI + + + +L P I + +
Sbjct: 73 DEYEMESPNITDT--MKFFLYVLEMVSKPMIYWECSNAT 109
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 26.7 bits (59), Expect = 4.8
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 7/44 (15%)
Query: 3 GNYTCLADNIFGKD---DIYYQVTILS--PPGVPNIL--LQSTT 39
Y C+A+N G D + P G P I +
Sbjct: 78 APYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRV 121
Score = 26.3 bits (58), Expect = 5.6
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 3 GNYTCLADNIFGK 15
G Y C+A+N G
Sbjct: 176 GKYECVAENSMGT 188
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 26.9 bits (58), Expect = 5.0
Identities = 9/96 (9%), Positives = 24/96 (25%), Gaps = 12/96 (12%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVPN-------ILLQSTTTHSISILWKPSYDGGA 55
G Y C A + + + +L P + ++ + K +
Sbjct: 198 GQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSS 257
Query: 56 IITHYIVSYRDRTEDWQ-----SVHVDAEYREFTLT 86
+V ++ + F++
Sbjct: 258 GENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVV 293
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 26.1 bits (57), Expect = 5.0
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 3 GNYTCLADNIFGKDDIYY--QVTILSPPGVPNIL 34
G Y C A N ++ + +V + V +L
Sbjct: 103 GTYECRASNDPDRNHLTRAPRVKWVRAQAVVLVL 136
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 25.7 bits (57), Expect = 5.0
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 3 GNYTCLADNIFGKD 16
G YTCLA+N G+
Sbjct: 77 GTYTCLAENALGQV 90
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 25.4 bits (56), Expect = 6.4
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 3 GNYTCLADNIFGKD 16
G YTC+A + G+
Sbjct: 75 GTYTCVATSSSGET 88
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase,
periplasm, beta-helix, glycosidase, EXO-activity; HET:
AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A*
Length = 608
Score = 26.5 bits (58), Expect = 6.5
Identities = 26/126 (20%), Positives = 39/126 (30%), Gaps = 27/126 (21%)
Query: 23 TILSPPGVPNILLQSTTTHSISILW-KPSYDGGAIITHYIV------------------- 62
+ L P + + SI ++W P I Y +
Sbjct: 33 SSLDAPQQLQVPTLAYDESSIVLVWKAPEDTRK--IVDYQIFSAGKLLGKASDNNDNFSP 90
Query: 63 --SYRDR--TEDWQSVHVDAEYREFTLTQLKCGTHYKINIKLVNSIG-ESKPSKTIAAST 117
Y D D + + FT+ LK T Y+ +K + G S SK I A T
Sbjct: 91 AKPYIDHFYVNDKDNFQHKIVMQNFTVIGLKPETSYQFTVKAQYADGSLSVASKPITAKT 150
Query: 118 KGEDQT 123
+ Q
Sbjct: 151 SAKPQI 156
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 26.0 bits (57), Expect = 6.6
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVPN 32
YTC A N G+ ++ + +
Sbjct: 111 AKYTCKAVNSLGEATCTAELLVETMGKEGE 140
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo
sapiens}
Length = 97
Score = 25.4 bits (56), Expect = 7.2
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 3 GNYTCLADNIFGKD 16
G Y C N +G+D
Sbjct: 71 GTYRCKVVNDYGED 84
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 26.4 bits (57), Expect = 7.4
Identities = 5/31 (16%), Positives = 9/31 (29%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVPNI 33
G YTC + + ++ I
Sbjct: 214 GIYTCSIYVGKLESRKTIVLHVVQDEFQRTI 244
>1q6w_A Monoamine oxidase regulatory protein, putative; structural
genomics, nysgxrc T805, hot DOG fold; 2.81A
{Archaeoglobus fulgidus} SCOP: d.38.1.4
Length = 161
Score = 25.7 bits (57), Expect = 8.9
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 8/35 (22%)
Query: 54 GAIITHY--------IVSYRDRTEDWQSVHVDAEY 80
G I I ++ T D+ +H D E+
Sbjct: 21 GEKIEGLPRTVTETDIWTFAYLTADFFPLHTDVEF 55
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 25.9 bits (56), Expect = 9.8
Identities = 12/36 (33%), Positives = 14/36 (38%)
Query: 3 GNYTCLADNIFGKDDIYYQVTILSPPGVPNILLQST 38
+Y C A K + QV I S P P I L
Sbjct: 67 HSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGP 102
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.393
Gapped
Lambda K H
0.267 0.0692 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,933,074
Number of extensions: 160470
Number of successful extensions: 1136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 961
Number of HSP's successfully gapped: 542
Length of query: 197
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 108
Effective length of database: 4,216,824
Effective search space: 455416992
Effective search space used: 455416992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.0 bits)