BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9140
(114 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O60469|DSCAM_HUMAN Down syndrome cell adhesion molecule OS=Homo sapiens GN=DSCAM PE=1
SV=2
Length = 2012
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 58/101 (57%), Gaps = 6/101 (5%)
Query: 10 YEINTGNTFVLRGNIAVLQCNIPA-YNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGA 68
Y + + +RGN+AV +C IP+ + +++W ++ VS + SG R+ IT+ GA
Sbjct: 126 YTVRVEDQKTMRGNVAVFKCIIPSSVEAYITVVSWEKDTVS-----LVSGSRFLITSTGA 180
Query: 69 LHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIA 109
L+I+D ED Y C T H+ TGE + S +++ VS+ A
Sbjct: 181 LYIKDVQNEDGLYNYRCITRHRYTGETRQSNSARLFVSDPA 221
>sp|Q8VHZ8|DSCAM_RAT Down syndrome cell adhesion molecule homolog OS=Rattus norvegicus
GN=Dscam PE=1 SV=1
Length = 2013
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 58/101 (57%), Gaps = 6/101 (5%)
Query: 10 YEINTGNTFVLRGNIAVLQCNIPA-YNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGA 68
Y + + +RGN+AV +C IP+ + +++W ++ VS + SG R+ IT+ GA
Sbjct: 126 YTVRVEDQKTMRGNVAVFKCIIPSSVEAYVTVVSWEKDTVS-----LVSGSRFLITSTGA 180
Query: 69 LHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIA 109
L+I+D ED Y C T H+ TGE + S +++ VS+ A
Sbjct: 181 LYIKDVQNEDGLYNYRCITRHRYTGETRQSNSARLFVSDPA 221
>sp|Q9ERC8|DSCAM_MOUSE Down syndrome cell adhesion molecule homolog OS=Mus musculus
GN=Dscam PE=1 SV=1
Length = 2013
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 58/101 (57%), Gaps = 6/101 (5%)
Query: 10 YEINTGNTFVLRGNIAVLQCNIPA-YNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGA 68
Y + + +RGN+AV +C IP+ + +++W ++ VS + SG R+ IT+ GA
Sbjct: 126 YTVRVEDQKTMRGNVAVFKCIIPSSVEAYVTVVSWEKDTVS-----LVSGSRFLITSTGA 180
Query: 69 LHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIA 109
L+I+D ED Y C T H+ TGE + S +++ VS+ A
Sbjct: 181 LYIKDVQNEDGLYNYRCITRHRYTGETRQSNSARLFVSDPA 221
>sp|Q4VA61|DSCL1_MOUSE Down syndrome cell adhesion molecule-like protein 1 homolog OS=Mus
musculus GN=Dscaml1 PE=1 SV=2
Length = 2053
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 6/101 (5%)
Query: 10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARSIIHSGGRYSITTAGA 68
Y + + +RGN+AV +C IP+ + +++W ++ VS I R+ IT+ G
Sbjct: 127 YTVRVEDQRSMRGNVAVFKCLIPSSVQEYVSVVSWEKDTVS-----ITPENRFFITSHGG 181
Query: 69 LHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIA 109
L+I D ED+ Y C T HK +GE + S +++ V++ A
Sbjct: 182 LYISDVQKEDALSTYRCITQHKYSGETRQSNGARLSVTDPA 222
>sp|Q8TD84|DSCL1_HUMAN Down syndrome cell adhesion molecule-like protein 1 OS=Homo sapiens
GN=DSCAML1 PE=1 SV=2
Length = 2053
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 6/101 (5%)
Query: 10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARSIIHSGGRYSITTAGA 68
Y + + +RGN+AV +C IP+ + +++W ++ VS I R+ IT G
Sbjct: 127 YTVRVEDQRSMRGNVAVFKCLIPSSVQEYVSVVSWEKDTVS-----IIPEHRFFITYHGG 181
Query: 69 LHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIA 109
L+I D ED+ Y C T HK +GE + S +++ V++ A
Sbjct: 182 LYISDVQKEDALSTYRCITKHKYSGETRQSNGARLSVTDPA 222
>sp|Q9VS29|DSCL_DROME Down syndrome cell adhesion molecule-like protein Dscam2
OS=Drosophila melanogaster GN=Dscam2 PE=2 SV=3
Length = 2074
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/101 (20%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 6 MSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARSIIHSGGRYSIT 64
++ Y+++ RG A+L+C +P + L+ +++W+ E + G++ +
Sbjct: 129 VAQAYKVDVEVLSAARGCTAILRCVVPTFVKELVRVVSWVHEPAIYIYPSLQGDGKFHLL 188
Query: 65 TAGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMV 105
G L I + D + C++ H+LT + +S P+++ +
Sbjct: 189 PTGELLIHNLQESDESQSFRCRSMHRLTRQVVVSSPTRLRI 229
>sp|Q96MS0|ROBO3_HUMAN Roundabout homolog 3 OS=Homo sapiens GN=ROBO3 PE=1 SV=2
Length = 1386
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 9/102 (8%)
Query: 6 MSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT 65
+ D+ + GN V G AVL+C +P H ++W ++G AR + GR +I
Sbjct: 164 LRDDFRQSPGNVVVAVGEPAVLEC-VPPRGHPEPSVSWRKDG---AR-LKEEEGRITI-R 217
Query: 66 AGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSE 107
G L + T D+ + Y C ++ + GER+ S ++VMV E
Sbjct: 218 GGKLMMSHTLKSDAGM-YVCVASN-MAGERE-SAAAEVMVLE 256
>sp|Q90Z04|CDON_XENLA Cell adhesion molecule-related/down-regulated by oncogenes
OS=Xenopus laevis GN=cdon PE=2 SV=1
Length = 1249
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 17/96 (17%)
Query: 9 DYEINTGNTFVLR-GNIAVLQCNIPAYNHNL-----LLIAWLREGVSEARSIIHSGGRYS 62
D+E TG++ G+ A + C IP N + WL+E S +Y
Sbjct: 121 DFETTTGHSVTAEEGSSAFIGCKIPESNPKAHVRYKVRGKWLKE----------SSDKYL 170
Query: 63 ITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKIS 98
I +G LHI + +ED Y C + +T + K+S
Sbjct: 171 ILPSGNLHILNVSVEDRGT-YRCAAYNPVTHDLKLS 205
>sp|A4IGL7|PXDN_XENTR Peroxidasin OS=Xenopus tropicalis GN=pxdn PE=2 SV=1
Length = 1457
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 38 LLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKI 97
L +I W ++G+ S G++ I+ G L IRD G+ D RY C + + G +
Sbjct: 543 LPIITWNKDGIQVTES-----GKFHISPHGYLAIRDAGLADQG-RYECVARNPI-GYSSV 595
Query: 98 SPPSQVMVSEIA 109
S V+V E++
Sbjct: 596 SMVLSVLVPEVS 607
>sp|G5EBF1|SAX3_CAEEL Protein sax-3 OS=Caenorhabditis elegans GN=sax-3 PE=2 SV=1
Length = 1273
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 7/107 (6%)
Query: 1 MNMGDMSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGR 60
+ + + D+ + L G +AVL+C+ P +++W R+ E R I R
Sbjct: 126 LKLAMLREDFRVRPRTVQALGGEMAVLECS-PPRGFPEPVVSW-RKDDKELR--IQDMPR 181
Query: 61 YSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSE 107
Y++ + G L I DS Y C + + GER +S P+++ V E
Sbjct: 182 YTLHSDGNLIIDPVDRSDSGT-YQC-VANNMVGER-VSNPARLSVFE 225
>sp|Q6DDI6|WDR67_XENLA WD repeat-containing protein 67 OS=Xenopus laevis GN=wdr67 PE=2
SV=1
Length = 1089
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 40 LIAWLREGVSEARSI-IHSGGRYSITTA 66
L++W+R S SI IH+ GRY++TT+
Sbjct: 118 LVSWMRGHESAVTSISIHASGRYAVTTS 145
>sp|P20764|IGLL1_MOUSE Immunoglobulin lambda-like polypeptide 1 OS=Mus musculus GN=Igll1
PE=2 SV=3
Length = 209
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 10/87 (11%)
Query: 20 LRGNIAVLQCNIPAYNHNLLLIAW------LREGVSEARSIIHSGGRYSITTAGALHIRD 73
L+ N A L C + + L++ W + +GV + + +Y +++ L I D
Sbjct: 122 LQANKATLVCLVSEFYPGTLVVDWKVDGVPVTQGVETTQPSKQTNNKYMVSSYLTL-ISD 180
Query: 74 TGMEDSYIRYYCQTTHKL-TGERKISP 99
M S RY C+ TH+ T E+ +SP
Sbjct: 181 QWMPHS--RYSCRVTHEGNTVEKSVSP 205
>sp|Q7Z5N4|SDK1_HUMAN Protein sidekick-1 OS=Homo sapiens GN=SDK1 PE=1 SV=3
Length = 2213
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 19 VLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMED 78
V +G A+L +P ++ + W REG II S R +IT L I T D
Sbjct: 202 VSQGRAAILNL-LPITSYPRPQVTWFREG----HKIIPSN-RIAITLENQLVILATTTSD 255
Query: 79 SYIRYYCQTTHKLTGERKISP 99
+ YY Q ++ GE K SP
Sbjct: 256 AGA-YYVQAVNEKNGENKTSP 275
>sp|Q290N5|PTK7_DROPS Tyrosine-protein kinase-like otk OS=Drosophila pseudoobscura
pseudoobscura GN=otk PE=3 SV=2
Length = 1037
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 43 WLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQ 102
WL G R I + Y I LHI E+ Y C T +G R+ SPP++
Sbjct: 60 WLHNG----REIAYDKRVYRI--GSHLHIEAVQREEDVGDYVCIATSLASGAREASPPAK 113
Query: 103 VMV 105
+ V
Sbjct: 114 LSV 116
>sp|Q6NXY1|WDR67_MOUSE WD repeat-containing protein 67 OS=Mus musculus GN=Wdr67 PE=2 SV=1
Length = 996
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 40 LIAWLREGVSEARSI-IHSGGRYSITTA 66
L++W+R S SI +H+ GRY+ITT+
Sbjct: 118 LVSWMRGHESSVCSISVHASGRYAITTS 145
>sp|Q87M87|ARGA_VIBPA Amino-acid acetyltransferase OS=Vibrio parahaemolyticus serotype
O3:K6 (strain RIMD 2210633) GN=argA PE=1 SV=1
Length = 445
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 7 SSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTA 66
+SD + NTG L+G+IA + +P + LI++ +G G + A
Sbjct: 241 ASDSDYNTGTLRFLKGSIAACRAGVPRSH----LISYKVDGALIQELFSFDGIGTQVVMA 296
Query: 67 GALHIRDTGMED 78
A +R G++D
Sbjct: 297 SAEQVRQAGIDD 308
>sp|A0Q5D8|LPTD_FRATN LPS-assembly protein LptD OS=Francisella tularensis subsp. novicida
(strain U112) GN=lptD PE=3 SV=1
Length = 868
Score = 28.9 bits (63), Expect = 8.7, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALH 70
E + T + GN+ VLQC+ Y +N ++ L S RS++ +G + +
Sbjct: 113 EFDNDGTLIASGNVQVLQCDQELYGNNAIIN--LNSNNSAIRSLVMAGDVIVKQPSTGIV 170
Query: 71 IRDTGME 77
IR T ++
Sbjct: 171 IRTTELD 177
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,670,163
Number of Sequences: 539616
Number of extensions: 1472646
Number of successful extensions: 3265
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 3252
Number of HSP's gapped (non-prelim): 28
length of query: 114
length of database: 191,569,459
effective HSP length: 82
effective length of query: 32
effective length of database: 147,320,947
effective search space: 4714270304
effective search space used: 4714270304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)