Query psy9140
Match_columns 114
No_of_seqs 112 out of 422
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 20:00:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9140.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9140hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05852 Ig5_Contactin-1 Fifth 99.8 2E-19 4.3E-24 113.2 7.6 73 22-105 1-73 (73)
2 cd05851 Ig3_Contactin-1 Third 99.8 9.8E-19 2.1E-23 113.2 9.2 87 8-106 2-88 (88)
3 cd05762 Ig8_MLCK Eighth immuno 99.8 3.6E-18 7.7E-23 112.9 9.8 92 8-110 1-95 (98)
4 cd05745 Ig3_Peroxidasin Third 99.8 1.8E-18 3.8E-23 108.1 7.4 74 21-105 1-74 (74)
5 cd05724 Ig2_Robo Second immuno 99.8 6.5E-18 1.4E-22 107.2 10.0 85 12-105 1-86 (86)
6 cd05853 Ig6_Contactin-4 Sixth 99.8 3.8E-18 8.3E-23 111.0 8.1 81 23-109 1-85 (85)
7 cd05722 Ig1_Neogenin First imm 99.8 8.7E-18 1.9E-22 109.4 9.5 88 10-105 2-95 (95)
8 cd05728 Ig4_Contactin-2-like F 99.8 4.1E-18 9E-23 109.3 7.3 85 9-105 1-85 (85)
9 cd05738 Ig2_RPTP_IIa_LAR_like 99.7 8.3E-18 1.8E-22 105.3 7.8 74 25-106 1-74 (74)
10 cd07693 Ig1_Robo First immunog 99.7 5.2E-17 1.1E-21 104.6 10.9 93 8-105 2-99 (100)
11 cd04968 Ig3_Contactin_like Thi 99.7 2.4E-17 5.2E-22 105.8 9.0 86 9-106 3-88 (88)
12 cd05870 Ig5_NCAM-2 Fifth immun 99.7 3.8E-17 8.3E-22 107.2 9.3 91 9-105 3-98 (98)
13 cd05865 Ig1_NCAM-1 First immun 99.7 2.9E-17 6.3E-22 108.5 8.7 89 9-105 2-95 (96)
14 KOG3513|consensus 99.7 1.8E-17 4E-22 144.4 9.7 96 7-113 424-521 (1051)
15 cd05726 Ig4_Robo Fhird immunog 99.7 5.1E-17 1.1E-21 104.9 8.8 82 22-109 1-85 (90)
16 cd05845 Ig2_L1-CAM_like Second 99.7 5.6E-17 1.2E-21 107.6 8.8 86 9-100 4-91 (95)
17 cd05747 Ig5_Titin_like M5, fif 99.7 6.7E-17 1.5E-21 104.8 8.8 80 6-93 2-84 (92)
18 cd04969 Ig5_Contactin_like Fif 99.7 5.2E-17 1.1E-21 101.1 7.5 73 22-105 1-73 (73)
19 cd05850 Ig1_Contactin-2 First 99.7 1.4E-16 2.9E-21 104.3 9.6 88 8-104 2-93 (94)
20 cd05848 Ig1_Contactin-5 First 99.7 1.9E-16 4.1E-21 103.7 9.6 87 8-103 2-92 (94)
21 cd05727 Ig2_Contactin-2-like S 99.7 1.2E-16 2.6E-21 106.3 8.7 90 8-101 3-93 (96)
22 cd05854 Ig6_Contactin-2 Sixth 99.7 1.4E-16 3.1E-21 102.6 8.1 81 23-109 1-85 (85)
23 cd05723 Ig4_Neogenin Fourth im 99.7 1.2E-16 2.5E-21 99.4 6.9 71 24-105 1-71 (71)
24 cd05867 Ig4_L1-CAM_like Fourth 99.7 1.8E-16 3.9E-21 99.4 7.8 75 22-105 1-75 (76)
25 cd05732 Ig5_NCAM-1_like Fifth 99.7 1.8E-16 4E-21 102.6 7.8 87 12-104 6-95 (96)
26 cd05892 Ig_Myotilin_C C-termin 99.7 9.4E-17 2E-21 101.7 6.2 71 25-105 1-75 (75)
27 cd05869 Ig5_NCAM-1 Fifth immun 99.7 2.8E-16 6E-21 102.9 8.6 94 6-105 1-97 (97)
28 cd05849 Ig1_Contactin-1 First 99.7 5E-16 1.1E-20 101.8 9.8 87 8-104 2-92 (93)
29 cd05866 Ig1_NCAM-2 First immun 99.7 2.4E-16 5.3E-21 103.5 8.2 77 9-93 2-81 (92)
30 cd05740 Ig_CEACAM_D4 Fourth im 99.7 3.5E-16 7.6E-21 102.1 8.7 83 12-106 8-91 (91)
31 cd04970 Ig6_Contactin_like Six 99.7 2.7E-16 5.7E-21 100.5 7.4 81 23-109 1-85 (85)
32 cd05893 Ig_Palladin_C C-termin 99.7 1.4E-16 3E-21 100.8 5.6 71 25-105 1-75 (75)
33 cd05737 Ig_Myomesin_like_C C-t 99.7 4.8E-16 1E-20 100.9 8.2 73 13-93 7-83 (92)
34 cd04977 Ig1_NCAM-1_like First 99.7 6.8E-16 1.5E-20 100.6 8.4 84 10-104 3-91 (92)
35 cd05758 Ig5_KIRREL3-like Fifth 99.7 1.2E-15 2.5E-20 100.1 9.3 81 9-93 3-90 (98)
36 cd05894 Ig_C5_MyBP-C C5 immuno 99.7 8.1E-16 1.8E-20 99.3 8.4 71 16-93 4-77 (86)
37 cd05725 Ig3_Robo Third immunog 99.6 5.3E-16 1.1E-20 95.4 6.6 69 25-105 1-69 (69)
38 cd05868 Ig4_NrCAM Fourth immun 99.6 7.8E-16 1.7E-20 97.0 7.3 75 22-105 1-75 (76)
39 cd05735 Ig8_DSCAM Eight immuno 99.6 1.1E-15 2.3E-20 99.0 8.2 78 22-109 1-85 (88)
40 cd04972 Ig_TrkABC_d4 Fourth do 99.6 1E-15 2.2E-20 98.8 7.8 83 12-105 5-90 (90)
41 cd05882 Ig1_Necl-1 First (N-te 99.6 1.4E-15 3.1E-20 100.4 8.4 87 12-105 2-95 (95)
42 PF07679 I-set: Immunoglobulin 99.6 9.7E-16 2.1E-20 97.5 7.3 87 8-105 1-90 (90)
43 cd04975 Ig4_SCFR_like Fourth i 99.6 1.1E-15 2.3E-20 102.0 7.8 81 15-106 11-100 (101)
44 cd05730 Ig3_NCAM-1_like Third 99.6 1.9E-15 4E-20 98.1 8.7 84 13-106 9-93 (95)
45 cd05763 Ig_1 Subgroup of the i 99.6 1.4E-15 3E-20 94.9 7.7 73 25-105 1-74 (75)
46 cd04974 Ig3_FGFR Third immunog 99.6 2.1E-15 4.6E-20 97.7 8.8 79 22-106 1-90 (90)
47 cd04973 Ig1_FGFR First immunog 99.6 1.5E-15 3.2E-20 96.3 7.8 70 14-93 1-70 (79)
48 cd05746 Ig4_Peroxidasin Fourth 99.6 8.3E-16 1.8E-20 94.9 6.1 61 25-93 1-61 (69)
49 cd05744 Ig_Myotilin_C_like Imm 99.6 1.2E-15 2.6E-20 96.0 6.8 71 25-105 1-75 (75)
50 cd05764 Ig_2 Subgroup of the i 99.6 2.8E-15 6E-20 93.1 8.0 74 22-105 1-74 (74)
51 cd04978 Ig4_L1-NrCAM_like Four 99.6 2.9E-15 6.2E-20 93.0 8.0 75 22-105 1-75 (76)
52 cd05736 Ig2_Follistatin_like S 99.6 4E-15 8.7E-20 92.9 8.1 74 25-107 1-75 (76)
53 KOG4222|consensus 99.6 1.6E-15 3.5E-20 132.5 7.9 106 1-113 125-230 (1281)
54 cd05743 Ig_Perlecan_D2_like Im 99.6 4.3E-15 9.2E-20 93.7 7.8 64 22-93 1-67 (78)
55 cd05734 Ig7_DSCAM Seventh immu 99.6 3.8E-15 8.3E-20 93.9 7.1 76 25-105 1-79 (79)
56 cd05873 Ig_Sema4D_like Immunog 99.6 5.6E-15 1.2E-19 96.5 7.8 69 13-90 2-70 (87)
57 cd05749 Ig2_Tyro3_like Second 99.6 4.1E-15 9E-20 95.5 7.1 80 10-103 1-80 (81)
58 cd07701 Ig1_Necl-3 First (N-te 99.6 9.8E-15 2.1E-19 96.0 8.4 87 12-105 2-95 (95)
59 cd05876 Ig3_L1-CAM Third immun 99.6 4.3E-15 9.2E-20 92.3 6.3 71 25-106 1-71 (71)
60 cd05756 Ig1_IL1R_like First im 99.6 7.8E-15 1.7E-19 96.4 7.7 83 15-105 7-94 (94)
61 cd05765 Ig_3 Subgroup of the i 99.6 9.7E-15 2.1E-19 91.5 7.6 78 22-105 1-81 (81)
62 cd05857 Ig2_FGFR Second immuno 99.6 1.4E-14 3E-19 91.8 8.1 81 17-105 4-85 (85)
63 cd05760 Ig2_PTK7 Second immuno 99.6 2.1E-14 4.6E-19 90.5 8.7 74 25-106 1-75 (77)
64 cd05891 Ig_M-protein_C C-termi 99.6 1.7E-14 3.7E-19 94.0 8.2 73 13-93 7-83 (92)
65 cd04967 Ig1_Contactin First Ig 99.5 3.3E-14 7.2E-19 91.9 8.2 79 8-93 2-84 (91)
66 cd05858 Ig3_FGFR-2 Third immun 99.5 2.9E-14 6.4E-19 92.1 7.7 73 22-105 1-89 (90)
67 cd05773 Ig8_hNephrin_like Eigh 99.5 8.9E-14 1.9E-18 93.4 10.1 92 8-109 5-108 (109)
68 cd05859 Ig4_PDGFR-alpha Fourth 99.5 3E-14 6.5E-19 94.9 7.5 80 16-106 12-100 (101)
69 KOG4194|consensus 99.5 2.7E-14 5.9E-19 119.7 8.0 98 6-111 611-709 (873)
70 cd04979 Ig_Semaphorin_C Immuno 99.5 1.1E-13 2.3E-18 89.0 8.8 87 13-107 2-88 (89)
71 cd05733 Ig6_L1-CAM_like Sixth 99.5 1E-13 2.2E-18 87.3 8.1 71 25-103 1-76 (77)
72 cd05752 Ig1_FcgammaR_like Frst 99.5 1.2E-13 2.5E-18 88.1 8.4 76 10-105 3-78 (78)
73 cd05748 Ig_Titin_like Immunogl 99.5 7.2E-14 1.6E-18 86.8 7.3 71 24-105 1-74 (74)
74 cd05739 Ig3_RPTP_IIa_LAR_like 99.5 9.3E-14 2E-18 86.3 7.3 61 22-93 1-61 (69)
75 cd05875 Ig6_hNeurofascin_like 99.5 1E-13 2.2E-18 87.7 7.7 71 25-103 1-76 (77)
76 KOG4221|consensus 99.5 8.9E-14 1.9E-18 122.4 9.7 89 8-106 141-229 (1381)
77 cd05731 Ig3_L1-CAM_like Third 99.5 6.6E-14 1.4E-18 85.7 5.7 69 25-105 1-70 (71)
78 cd05898 Ig5_KIRREL3 Fifth immu 99.5 3.9E-13 8.5E-18 89.5 9.8 83 8-94 2-91 (98)
79 cd04976 Ig2_VEGFR Second immun 99.5 7.7E-14 1.7E-18 86.9 5.4 60 25-93 1-60 (71)
80 cd05864 Ig2_VEGFR-2 Second imm 99.5 7.1E-14 1.5E-18 87.4 5.3 59 25-93 1-59 (70)
81 cd05856 Ig2_FGFRL1-like Second 99.5 1.2E-13 2.6E-18 86.2 6.0 69 18-93 5-73 (82)
82 cd05757 Ig2_IL1R_like Second i 99.5 3.6E-13 7.8E-18 88.4 8.2 72 16-94 4-78 (92)
83 KOG4221|consensus 99.5 3.6E-13 7.7E-18 118.7 9.7 95 9-113 239-333 (1381)
84 cd05874 Ig6_NrCAM Sixth immuno 99.4 5.6E-13 1.2E-17 84.3 7.8 63 25-93 1-68 (77)
85 cd05871 Ig_Semaphorin_classIII 99.4 1.4E-12 2.9E-17 85.3 9.5 83 17-107 6-90 (91)
86 cd05863 Ig2_VEGFR-3 Second imm 99.4 2.5E-13 5.5E-18 84.5 5.6 56 25-93 1-56 (67)
87 cd05754 Ig3_Perlecan_like Thir 99.4 5.1E-13 1.1E-17 85.1 7.1 79 11-103 5-84 (85)
88 cd05717 Ig1_Necl-1-3_like Firs 99.4 1.2E-12 2.6E-17 85.1 8.5 85 14-105 4-95 (95)
89 KOG3513|consensus 99.4 7E-13 1.5E-17 116.1 9.7 93 7-108 331-423 (1051)
90 cd07702 Ig2_VEGFR-1 Second imm 99.4 3.2E-13 6.9E-18 85.2 5.4 61 26-94 2-62 (72)
91 cd04971 Ig_TrKABC_d5 Fifth dom 99.4 9.5E-13 2.1E-17 84.3 7.0 59 27-93 3-71 (81)
92 cd05855 Ig_TrkB_d5 Fifth domai 99.4 1.1E-12 2.3E-17 84.2 6.9 59 27-93 3-69 (79)
93 cd05742 Ig1_VEGFR_like First i 99.4 1.8E-12 4E-17 82.4 6.1 79 22-105 1-83 (84)
94 smart00408 IGc2 Immunoglobulin 99.3 9.6E-12 2.1E-16 72.2 8.1 62 21-91 1-62 (63)
95 cd05750 Ig_Pro_neuregulin Immu 99.3 5.3E-12 1.2E-16 77.9 6.2 62 26-93 2-68 (75)
96 cd05774 Ig_CEACAM_D1 First imm 99.3 1.8E-11 4E-16 82.3 8.8 78 11-91 2-93 (105)
97 PHA02785 IL-beta-binding prote 99.3 9.9E-12 2.2E-16 97.5 8.6 84 8-92 221-316 (326)
98 smart00409 IG Immunoglobulin. 99.3 4.4E-11 9.6E-16 72.7 9.6 81 14-105 1-85 (86)
99 smart00410 IG_like Immunoglobu 99.3 4.4E-11 9.6E-16 72.7 9.6 81 14-105 1-85 (86)
100 cd05729 Ig2_FGFR_like Second i 99.3 2.4E-11 5.2E-16 75.9 8.4 68 18-93 5-76 (85)
101 cd05895 Ig_Pro_neuregulin-1 Im 99.3 9.6E-12 2.1E-16 77.6 6.2 66 25-93 1-69 (76)
102 cd05753 Ig2_FcgammaR_like Seco 99.3 3.2E-11 6.9E-16 77.3 7.5 80 12-105 4-83 (83)
103 cd05862 Ig1_VEGFR First immuno 99.2 4.6E-11 1E-15 77.0 7.5 82 22-107 1-86 (86)
104 PHA02826 IL-1 receptor-like pr 99.2 5.4E-11 1.2E-15 89.6 9.0 74 14-93 136-213 (227)
105 cd05872 Ig_Sema4B_like Immunog 99.2 8.1E-11 1.8E-15 76.6 8.5 66 14-89 3-68 (85)
106 cd05881 Ig1_Necl-2 First (N-te 99.2 8.5E-11 1.8E-15 77.9 8.5 74 14-90 4-84 (95)
107 cd04983 IgV_TCR_alpha_like Imm 99.2 3.7E-10 8.1E-15 74.4 10.1 92 12-106 3-109 (109)
108 cd05861 Ig1_PDGFR-alphabeta Fr 99.2 1.2E-10 2.6E-15 74.6 6.6 80 22-106 1-83 (84)
109 PF13895 Ig_2: Immunoglobulin 99.2 1.5E-10 3.2E-15 71.1 6.6 76 13-105 5-80 (80)
110 PF00047 ig: Immunoglobulin do 99.1 9.7E-11 2.1E-15 70.2 5.1 58 22-87 1-64 (64)
111 PHA02785 IL-beta-binding prote 99.1 2.7E-10 5.9E-15 89.4 8.7 90 10-107 124-217 (326)
112 cd05879 Ig_P0 Immunoglobulin ( 99.1 4.8E-10 1E-14 76.5 8.6 79 14-93 5-105 (116)
113 cd05741 Ig_CEACAM_D1_like Firs 99.1 2.8E-10 6.2E-15 72.7 7.0 66 22-91 1-80 (92)
114 PHA02826 IL-1 receptor-like pr 99.1 3.6E-10 7.7E-15 85.2 7.9 91 12-109 27-136 (227)
115 cd07690 Ig1_CD4 First immunogl 99.1 3.1E-10 6.7E-15 74.9 6.4 71 18-91 3-88 (94)
116 cd05897 Ig2_IL1R2_like Second 99.1 5.3E-10 1.2E-14 74.1 7.1 73 17-94 5-81 (95)
117 cd05899 IgV_TCR_beta Immunoglo 99.1 1.8E-09 3.9E-14 71.8 9.7 91 11-105 2-110 (110)
118 cd05751 Ig1_LILRB1_like First 99.1 5.8E-10 1.3E-14 72.3 6.3 89 8-106 3-91 (91)
119 cd04980 IgV_L_kappa Immunoglob 99.0 2.2E-09 4.8E-14 70.9 8.8 92 10-105 3-106 (106)
120 cd05713 Ig_MOG_like Immunoglob 99.0 1.6E-09 3.5E-14 70.6 8.1 69 22-91 1-88 (100)
121 KOG4194|consensus 99.0 4.2E-10 9.2E-15 94.9 6.5 104 7-113 503-617 (873)
122 cd00099 IgV Immunoglobulin var 99.0 1.9E-09 4.2E-14 70.1 7.5 86 18-105 2-105 (105)
123 KOG4222|consensus 99.0 5.7E-10 1.2E-14 98.4 6.0 96 6-113 224-320 (1281)
124 cd05877 Ig_LP_like Immunoglobu 99.0 2.8E-09 6E-14 70.3 7.8 82 21-106 1-103 (106)
125 PF07686 V-set: Immunoglobulin 99.0 3.2E-09 7E-14 68.9 7.7 89 12-105 6-114 (114)
126 cd05775 Ig_SLAM-CD84_like_N N- 99.0 1.9E-09 4.2E-14 70.8 6.6 69 20-91 2-84 (97)
127 cd05896 Ig1_IL1RAPL-1_like Fir 99.0 4.2E-09 9E-14 71.0 7.6 79 10-90 3-92 (104)
128 cd05714 Ig_CSPGs_LP Immunoglob 99.0 5.1E-09 1.1E-13 69.1 7.9 82 21-106 1-103 (106)
129 cd05718 Ig1_PVR_like First imm 98.9 1.2E-08 2.5E-13 66.0 8.5 80 23-105 1-97 (98)
130 cd05880 Ig_EVA1 Immunoglobulin 98.9 1.8E-08 3.9E-13 68.2 9.0 78 14-92 5-103 (115)
131 cd05900 Ig_Aggrecan Immunoglob 98.9 2.1E-08 4.5E-13 68.1 9.1 82 21-106 1-109 (112)
132 cd05715 Ig_P0-like Immunoglobu 98.9 3.2E-08 7E-13 66.5 9.7 79 13-92 4-104 (116)
133 cd05885 Ig2_Necl-4 Second immu 98.9 1.4E-08 3.1E-13 65.3 7.3 65 25-93 2-68 (80)
134 cd05878 Ig_Aggrecan_like Immun 98.9 2.2E-08 4.8E-13 67.3 8.3 70 21-91 1-95 (110)
135 cd04982 IgV_TCR_gamma Immunogl 98.8 2.8E-08 6.1E-13 66.4 8.5 78 12-90 3-99 (116)
136 PF13927 Ig_3: Immunoglobulin 98.8 5.1E-09 1.1E-13 63.1 4.3 71 11-89 5-75 (75)
137 cd05846 Ig1_MRC-OX-2_like Firs 98.8 3.8E-08 8.1E-13 64.3 8.5 80 22-106 1-97 (97)
138 cd07706 IgV_TCR_delta Immunogl 98.8 4.7E-08 1E-12 65.5 9.2 94 11-106 3-115 (116)
139 cd05712 Ig_Siglec_N Immunoglob 98.8 7.9E-08 1.7E-12 65.1 10.2 77 13-90 5-102 (119)
140 cd05888 Ig1_Nectin-4_like Frst 98.8 4.5E-08 9.8E-13 64.5 8.7 80 23-105 1-99 (100)
141 cd04984 IgV_L_lambda Immunoglo 98.8 3.6E-08 7.7E-13 64.2 7.4 85 18-105 2-98 (98)
142 cd00098 IgC Immunoglobulin Con 98.7 2.9E-08 6.2E-13 63.7 5.9 68 20-90 11-84 (95)
143 cd05887 Ig1_Nectin-3_like Firs 98.7 1.4E-07 3.1E-12 62.5 9.2 77 24-105 2-95 (96)
144 cd05886 Ig1_Nectin-1_like Firs 98.7 1.3E-07 2.8E-12 62.9 8.8 79 24-105 2-98 (99)
145 cd05860 Ig4_SCFR Fourth immuno 98.7 8.9E-08 1.9E-12 64.3 7.7 82 16-106 12-100 (101)
146 cd05759 Ig2_KIRREL3-like Secon 98.7 2.6E-07 5.5E-12 58.2 8.4 62 25-92 2-70 (82)
147 cd05771 IgC_Tapasin_R Tapasin- 98.7 3.5E-07 7.5E-12 63.1 9.5 80 8-90 39-130 (139)
148 cd07700 IgV_CD8_beta Immunoglo 98.7 1.9E-07 4.1E-12 62.0 7.9 84 18-105 2-107 (107)
149 cd04981 IgV_H Immunoglobulin ( 98.6 3.4E-07 7.3E-12 62.1 8.7 93 12-105 2-116 (117)
150 cd07705 Ig2_Necl-1 Second immu 98.6 3.2E-07 6.9E-12 58.8 7.8 62 25-93 2-71 (83)
151 cd05716 Ig_pIgR Immunoglobulin 98.6 2.6E-07 5.6E-12 60.0 6.8 72 18-91 3-87 (98)
152 cd05755 Ig2_ICAM-1_like Second 98.6 4.1E-07 9E-12 60.8 7.3 83 8-93 2-87 (100)
153 cd05889 Ig1_DNAM-1_like First 98.5 1.3E-06 2.9E-11 57.8 9.2 68 23-93 1-85 (96)
154 cd05711 Ig_FcalphaRI Immunoglo 98.5 1.1E-06 2.4E-11 57.4 8.2 65 16-88 9-75 (94)
155 cd07696 IgC_CH3 CH3 domain (th 98.5 3.1E-07 6.8E-12 60.6 5.6 75 13-90 5-85 (96)
156 PHA02987 Ig domain OX-2-like p 98.5 2.6E-06 5.7E-11 62.8 9.9 90 16-109 24-125 (189)
157 cd05761 Ig2_Necl-1-4_like Seco 98.4 1.7E-06 3.7E-11 54.9 7.5 64 25-92 2-69 (82)
158 cd05902 Ig_Neurocan Immunoglob 98.4 1.3E-06 2.8E-11 59.1 6.6 70 21-91 1-95 (110)
159 smart00407 IGc1 Immunoglobulin 98.4 2.2E-06 4.7E-11 53.6 7.2 64 24-90 1-70 (75)
160 cd05772 IgC_SIRP Signal-regula 98.4 2.3E-06 5E-11 57.9 7.7 79 9-90 8-91 (111)
161 cd05901 Ig_Versican Immunoglob 98.4 3.2E-06 6.9E-11 58.1 8.1 81 22-106 2-114 (117)
162 PHA03376 BARF1; Provisional 98.4 5.5E-06 1.2E-10 61.6 9.7 90 17-107 21-131 (221)
163 cd05883 Ig2_Necl-2 Second immu 98.3 5.3E-06 1.1E-10 53.6 8.3 76 25-106 2-80 (82)
164 smart00406 IGv Immunoglobulin 98.3 1.2E-06 2.6E-11 53.7 5.0 62 24-87 1-81 (81)
165 cd05720 Ig_CD8_alpha Immunoglo 98.3 2E-06 4.3E-11 57.0 6.1 69 18-89 2-90 (104)
166 PF07654 C1-set: Immunoglobuli 98.3 4.1E-06 9E-11 53.0 7.3 64 22-91 8-77 (83)
167 cd05884 Ig2_Necl-3 Second immu 98.3 4.7E-06 1E-10 53.5 7.5 63 25-91 2-69 (83)
168 cd05770 IgC_beta2m Class I maj 98.3 4E-06 8.6E-11 55.2 7.1 64 20-90 13-82 (93)
169 cd05847 IgC_CH2_IgE CH2 domain 98.3 2.8E-06 6.2E-11 55.8 6.0 68 20-90 12-85 (94)
170 cd05769 IgC_TCR_beta T cell re 98.3 1.9E-06 4.1E-11 58.8 4.9 71 18-90 14-91 (115)
171 cd05768 IgC_CH4 CH4 domain (fo 98.2 2E-06 4.4E-11 57.2 4.8 71 17-90 11-90 (102)
172 cd07699 IgC_L Immunoglobulin C 98.2 2.5E-06 5.5E-11 56.4 5.1 69 19-90 14-88 (100)
173 KOG1480|consensus 98.2 5.1E-07 1.1E-11 77.7 1.1 85 2-94 124-209 (909)
174 cd00096 Ig Immunoglobulin doma 98.2 6.2E-06 1.4E-10 46.8 5.4 64 25-91 1-66 (74)
175 cd04986 IgC_CH2 CH2 domain (se 98.2 4.4E-06 9.4E-11 55.8 5.1 76 12-90 9-88 (99)
176 cd07698 IgC_MHC_I_alpha3 Class 98.2 1.8E-05 3.9E-10 51.3 7.8 66 22-90 14-82 (93)
177 cd05767 IgC_MHC_II_alpha Class 98.1 1.8E-05 3.8E-10 52.1 6.6 64 21-90 14-83 (94)
178 cd07697 IgC_TCR_gamma T cell r 98.0 1.2E-05 2.7E-10 53.2 5.3 69 17-90 11-84 (96)
179 cd05766 IgC_MHC_II_beta Class 98.0 4.6E-05 9.9E-10 49.9 7.7 65 20-90 12-82 (94)
180 cd04985 IgC_CH1 CH1 domain (fi 98.0 4.2E-05 9E-10 50.4 6.9 67 21-90 15-86 (95)
181 cd05771 IgC_Tapasin_R Tapasin- 97.7 2.9E-05 6.3E-10 53.5 3.0 40 68-111 2-41 (139)
182 PF08205 C2-set_2: CD80-like C 97.7 0.00036 7.9E-09 44.1 7.4 66 22-92 14-85 (89)
183 cd07694 Ig2_CD4 Second immunog 97.3 0.0038 8.2E-08 40.9 8.4 63 16-88 8-71 (88)
184 cd07703 Ig2_Nectin-2_like Seco 97.3 0.0014 3E-08 43.2 6.4 64 23-90 16-81 (95)
185 cd07692 Ig_CD3_epsilon Immunog 97.2 0.0013 2.9E-08 40.8 5.5 53 19-90 4-56 (65)
186 cd05719 Ig2_PVR_like Second im 97.2 0.0021 4.6E-08 42.2 6.8 65 23-91 16-82 (95)
187 cd07689 Ig2_VCAM-1 Second immu 97.1 0.0027 5.9E-08 42.5 6.4 74 18-92 11-87 (99)
188 cd05721 IgV_CTLA-4 Immunoglobu 96.7 0.0079 1.7E-07 41.3 6.4 76 12-88 3-94 (115)
189 PF07354 Sp38: Zona-pellucida- 96.6 0.0038 8.2E-08 48.4 4.5 47 40-91 14-60 (271)
190 PF08204 V-set_CD47: CD47 immu 96.4 0.015 3.2E-07 40.7 6.3 70 18-90 23-107 (130)
191 cd07704 Ig2_Nectin-3-4_like Se 96.1 0.043 9.2E-07 36.4 6.9 69 18-90 12-83 (97)
192 PHA02865 MHC-like TNF binding 96.0 0.014 2.9E-07 46.8 5.1 23 24-46 216-238 (338)
193 cd07691 Ig_CD3_gamma_delta Imm 95.4 0.076 1.6E-06 33.3 5.7 48 23-89 7-54 (69)
194 KOG4597|consensus 95.4 0.029 6.2E-07 46.9 4.8 77 13-92 202-281 (560)
195 PHA02633 hypothetical protein; 95.2 0.022 4.7E-07 35.1 2.8 25 65-90 16-40 (63)
196 PHA02982 hypothetical protein; 94.7 0.094 2E-06 39.9 5.5 74 15-91 32-123 (251)
197 PHA03042 CD47-like protein; Pr 92.7 0.51 1.1E-05 37.0 6.5 64 18-91 27-93 (286)
198 PF06328 Lep_receptor_Ig: Ig-l 92.4 1.1 2.4E-05 29.1 6.9 70 11-86 7-80 (89)
199 KOG3515|consensus 92.2 0.21 4.6E-06 43.8 4.3 83 15-108 15-97 (741)
200 KOG3515|consensus 91.5 0.87 1.9E-05 40.1 7.2 85 18-106 108-199 (741)
201 PF11465 Receptor_2B4: Natural 88.7 0.43 9.2E-06 32.4 2.5 33 58-91 61-94 (108)
202 PHA02914 Immunoglobulin-like d 87.1 2.9 6.3E-05 34.7 6.8 78 12-90 268-368 (500)
203 PHA03052 Hypothetical protein; 86.1 3.2 7E-05 26.0 5.2 49 14-63 4-54 (69)
204 PF03921 ICAM_N: Intercellular 84.8 8.8 0.00019 25.1 9.0 85 10-110 6-90 (91)
205 KOG3611|consensus 83.0 2.8 6.1E-05 37.0 5.3 66 20-90 567-634 (737)
206 PHA03282 envelope glycoprotein 82.1 2.5 5.5E-05 35.6 4.5 46 58-106 116-161 (540)
207 PHA03269 envelope glycoprotein 76.2 13 0.00029 31.6 7.0 98 11-110 331-438 (566)
208 PF12988 DUF3872: Domain of un 74.8 27 0.00058 24.7 7.9 84 9-95 32-127 (137)
209 PHA03270 envelope glycoprotein 70.0 23 0.0005 29.6 6.9 98 13-111 225-330 (466)
210 PHA03112 IL-18 binding protein 65.1 29 0.00064 24.6 5.8 70 21-90 37-118 (141)
211 PHA03271 envelope glycoprotein 64.6 32 0.00069 28.9 6.7 97 14-111 252-356 (490)
212 PHA03270 envelope glycoprotein 63.9 88 0.0019 26.3 9.9 38 69-108 184-221 (466)
213 PHA03273 envelope glycoprotein 59.0 48 0.001 28.0 6.8 99 12-111 240-347 (486)
214 PHA03273 envelope glycoprotein 56.1 1.1E+02 0.0024 25.9 8.5 21 69-90 200-220 (486)
215 PHA03269 envelope glycoprotein 54.8 26 0.00057 29.9 4.7 51 58-109 275-330 (566)
216 smart00635 BID_2 Bacterial Ig- 53.8 50 0.0011 20.3 8.6 66 9-76 4-72 (81)
217 PF02124 Marek_A: Marek's dise 52.3 86 0.0019 23.7 6.8 69 40-110 8-84 (211)
218 PHA02914 Immunoglobulin-like d 50.9 1.5E+02 0.0033 24.9 9.1 22 68-90 82-103 (500)
219 PF05790 C2-set: Immunoglobuli 50.6 62 0.0013 20.4 5.1 22 66-88 42-63 (80)
220 PF04296 DUF448: Protein of un 47.5 24 0.00053 22.0 2.8 30 59-88 17-46 (78)
221 PF15492 Nbas_N: Neuroblastoma 46.7 1.2E+02 0.0025 24.0 6.9 84 23-109 30-118 (282)
222 cd01256 PH_dynamin Dynamin ple 45.7 21 0.00045 24.2 2.3 44 40-92 30-73 (110)
223 PF05083 LST1: LST-1 protein; 45.5 16 0.00035 23.0 1.6 16 76-91 58-73 (74)
224 cd00279 YlxR Ylxr homologs; gr 38.3 48 0.001 20.9 3.1 29 60-88 19-47 (79)
225 PF10989 DUF2808: Protein of u 34.5 1.6E+02 0.0034 20.4 5.7 49 40-94 81-132 (146)
226 KOG1480|consensus 33.3 55 0.0012 29.6 3.5 79 8-88 25-108 (909)
227 PHA03376 BARF1; Provisional 33.0 76 0.0017 24.0 3.8 65 22-90 139-206 (221)
228 PHA03286 envelope glycoprotein 30.4 62 0.0013 27.4 3.2 21 68-89 308-328 (492)
229 PHA03283 envelope glycoprotein 30.0 64 0.0014 27.7 3.3 21 68-89 316-336 (542)
230 PF02480 Herpes_gE: Alphaherpe 29.3 18 0.00039 30.0 0.0 40 65-107 87-126 (439)
231 PHA03240 envelope glycoprotein 28.9 1.5E+02 0.0033 22.8 4.9 79 10-93 26-129 (258)
232 PHA03282 envelope glycoprotein 25.7 65 0.0014 27.4 2.6 24 65-89 330-354 (540)
233 PF08758 Cadherin_pro: Cadheri 24.9 60 0.0013 21.0 1.9 39 56-94 43-82 (90)
234 PF02368 Big_2: Bacterial Ig-l 24.0 1.7E+02 0.0037 17.5 4.6 73 9-86 4-78 (79)
235 cd01255 PH_TIAM TIAM Pleckstri 23.0 1.3E+02 0.0029 21.6 3.4 32 59-90 89-121 (160)
236 PF02480 Herpes_gE: Alphaherpe 21.9 55 0.0012 27.2 1.5 26 63-89 264-290 (439)
237 COG5475 Uncharacterized small 21.4 2E+02 0.0044 17.3 4.4 24 68-94 19-42 (60)
238 PF06092 DUF943: Enterobacteri 20.2 1.7E+02 0.0037 21.0 3.6 47 21-70 99-152 (157)
No 1
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.80 E-value=2e-19 Score=113.24 Aligned_cols=73 Identities=19% Similarity=0.274 Sum_probs=62.0
Q ss_pred CCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCCcEEeCCCe
Q psy9140 22 GNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPS 101 (114)
Q Consensus 22 G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a 101 (114)
|.+|+|+|.+.+.+.| .++|+|++..+ ..+.||.+.++|+|.|.+++.+|+| .|+|.|.|.++. .++.+
T Consensus 1 G~~~~l~C~~~g~P~p--~v~W~k~~~~l-----~~~~r~~~~~~g~L~I~~v~~~D~G-~Y~C~A~N~~G~---~~~~~ 69 (73)
T cd05852 1 GGRVIIECKPKAAPKP--KFSWSKGTELL-----VNNSRISIWDDGSLEILNITKLDEG-SYTCFAENNRGK---ANSTG 69 (73)
T ss_pred CCeEEEEEecceeCCC--EEEEEeCCEec-----ccCCCEEEcCCCEEEECcCChhHCE-EEEEEEECCCCc---eeEEE
Confidence 7899999999887655 89999998853 4568999999999999999999995 999999999875 45566
Q ss_pred EEEE
Q psy9140 102 QVMV 105 (114)
Q Consensus 102 ~L~V 105 (114)
.|.|
T Consensus 70 ~l~~ 73 (73)
T cd05852 70 VLSV 73 (73)
T ss_pred EEEC
Confidence 7654
No 2
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.79 E-value=9.8e-19 Score=113.22 Aligned_cols=87 Identities=20% Similarity=0.292 Sum_probs=72.1
Q ss_pred cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140 8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT 87 (114)
Q Consensus 8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a 87 (114)
+.|.+.++|..+.+|+.+.|.|.+.+.+.| .++|+|++..+ ..+.|+.+ .++.|.|.+++.+|+| .|+|.|
T Consensus 2 p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P--~v~W~k~~~~~-----~~~~~~~~-~~~~L~I~~v~~~D~G-~Y~C~A 72 (88)
T cd05851 2 ADINVKFKDTYALKGQNVTLECFALGNPVP--VIRWRKILEPM-----PATAEISM-SGAVLKIFNIQPEDEG-TYECEA 72 (88)
T ss_pred CceEEccccEEEeCCCcEEEEEEecccCCC--EEEEEECCcCC-----CCCCEEec-CCCEEEECcCChhhCE-EEEEEE
Confidence 678999999999999999999999887665 89999998743 33456554 4678999999999995 999999
Q ss_pred eeccCCcEEeCCCeEEEEe
Q psy9140 88 THKLTGERKISPPSQVMVS 106 (114)
Q Consensus 88 ~n~l~~~~~~s~~a~L~V~ 106 (114)
.|.++. .+..++|.|+
T Consensus 73 ~N~~G~---~~~~~~l~V~ 88 (88)
T cd05851 73 ENIKGK---DKHQARVYVQ 88 (88)
T ss_pred EcCCCc---eEEEEEEEEC
Confidence 999875 4556788774
No 3
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.77 E-value=3.6e-18 Score=112.90 Aligned_cols=92 Identities=15% Similarity=0.161 Sum_probs=77.2
Q ss_pred cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEcc---CCcEEEeecCCCCCCeeeE
Q psy9140 8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT---AGALHIRDTGMEDSYIRYY 84 (114)
Q Consensus 8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~---~G~L~I~~v~~~D~gg~Y~ 84 (114)
+.|...|++..+.+|+++.|.|.+.+.+++ .+.|+||+..+ ..+.||.+.. ...|.|.+++.+|+| .|+
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p--~v~W~kdg~~l-----~~~~~~~~~~~~~~s~L~I~~~~~~D~G-~Yt 72 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPI--TCTWMKFRKQI-----QEGEGIKIENTENSSKLTITEGQQEHCG-CYT 72 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCC--ceEEEECCEEe-----cCCCcEEEEecCCeeEEEECCCChhhCE-EEE
Confidence 468889999999999999999999876544 89999999854 4566787763 557999999999995 999
Q ss_pred EEEeeccCCcEEeCCCeEEEEecccc
Q psy9140 85 CQTTHKLTGERKISPPSQVMVSEIAL 110 (114)
Q Consensus 85 C~a~n~l~~~~~~s~~a~L~V~~~~~ 110 (114)
|.|.|.++. .+..++|.|.+++.
T Consensus 73 c~a~N~~G~---~~~~~~l~V~~~P~ 95 (98)
T cd05762 73 LEVENKLGS---RQAQVNLTVVDKPD 95 (98)
T ss_pred EEEEcCCCc---eeEEEEEEEecCCC
Confidence 999999976 46688999987764
No 4
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.77 E-value=1.8e-18 Score=108.14 Aligned_cols=74 Identities=23% Similarity=0.445 Sum_probs=61.9
Q ss_pred eCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCCcEEeCCC
Q psy9140 21 RGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPP 100 (114)
Q Consensus 21 ~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~ 100 (114)
+|++|.|+|.+.+.+.| .++|+|++..+ ..+.|+.+.++|.|.|.+|+.+|+| .|+|.|.|.++. .+..
T Consensus 1 eG~~v~l~C~~~g~P~p--~i~W~k~g~~~-----~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~A~N~~G~---~~~~ 69 (74)
T cd05745 1 EGQTVDFLCEAQGYPQP--VIAWTKGGSQL-----SVDRRHLVLSSGTLRISRVALHDQG-QYECQAVNIVGS---QRTV 69 (74)
T ss_pred CCCeEEEEeECCEecCC--EEEEEECCEEC-----CCCCCeEEccCCeEEEeeCCHHhCE-EEEEEEEeCCCc---eeEE
Confidence 69999999999887655 89999999853 3467888888999999999999995 999999999875 3446
Q ss_pred eEEEE
Q psy9140 101 SQVMV 105 (114)
Q Consensus 101 a~L~V 105 (114)
+.|.|
T Consensus 70 ~~L~V 74 (74)
T cd05745 70 AQLTV 74 (74)
T ss_pred EEEeC
Confidence 66654
No 5
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.77 E-value=6.5e-18 Score=107.17 Aligned_cols=85 Identities=24% Similarity=0.388 Sum_probs=69.4
Q ss_pred eccceeEEEeCCeEEEEeec-CCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140 12 INTGNTFVLRGNIAVLQCNI-PAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK 90 (114)
Q Consensus 12 v~~~d~~v~~G~~AvL~C~~-~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~ 90 (114)
++|++..+.+|++|.|.|.+ .+.+.+ .+.|+|++..+ ...+.|+.+..+|.|.|.+++.+|+| .|+|.|.|.
T Consensus 1 ~~p~~~~~~~G~~v~l~C~~~~g~p~p--~i~W~k~g~~~----~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a~N~ 73 (86)
T cd05724 1 VEPSDTQVAVGEMAVLECSPPRGHPEP--TVSWRKDGQPL----NLDNERVRIVDDGNLLIAEARKSDEG-TYKCVATNM 73 (86)
T ss_pred CCCccEEEeCCCCEEEEEECCCCCCCC--EEEEEECCEEC----CCCCCCEEEccCCEEEEeECCcccCE-EEEEEEEec
Confidence 46889999999999999997 454333 89999999864 23367888888899999999999995 999999999
Q ss_pred cCCcEEeCCCeEEEE
Q psy9140 91 LTGERKISPPSQVMV 105 (114)
Q Consensus 91 l~~~~~~s~~a~L~V 105 (114)
.+.. .|..+.|.|
T Consensus 74 ~G~~--~s~~~~l~V 86 (86)
T cd05724 74 VGER--ESAAARLSV 86 (86)
T ss_pred cCce--eeeeEEEEC
Confidence 8653 566777765
No 6
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.76 E-value=3.8e-18 Score=110.97 Aligned_cols=81 Identities=19% Similarity=0.362 Sum_probs=64.7
Q ss_pred CeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEE----ccCCcEEEeecCCCCCCeeeEEEEeeccCCcEEeC
Q psy9140 23 NIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSI----TTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKIS 98 (114)
Q Consensus 23 ~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v----~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s 98 (114)
++|+|+|.+.+.+..++.+.|+|||+.|.+ ...+.||.+ ..+|.|.|+|++.+|+| .|+|.|+|.++. .+
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~--~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG-~YtC~a~n~~~~---~~ 74 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDF--QKDGDHFERVGGQDSAGDLMIRSIQLKHAG-KYVCMVQTSVDK---LS 74 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcc--cCCCccEEEeccCCCCCcEEEecCCHHHCE-EEEEEEEcccCc---eE
Confidence 479999999554333338999999997622 134568877 35789999999999995 999999999986 68
Q ss_pred CCeEEEEeccc
Q psy9140 99 PPSQVMVSEIA 109 (114)
Q Consensus 99 ~~a~L~V~~~~ 109 (114)
..|.|.|+.|+
T Consensus 75 a~a~L~V~~pP 85 (85)
T cd05853 75 AAADLIVRGPP 85 (85)
T ss_pred EEEEEEEecCC
Confidence 89999999885
No 7
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.75 E-value=8.7e-18 Score=109.41 Aligned_cols=88 Identities=23% Similarity=0.356 Sum_probs=71.9
Q ss_pred eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeec-----CCCCCCeeeE
Q psy9140 10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDT-----GMEDSYIRYY 84 (114)
Q Consensus 10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v-----~~~D~gg~Y~ 84 (114)
|...|++..+.+|+++.|.|.+.+.+.+ .+.|+||+..+ ....+.|+.+.++|.|.|.++ +.+|+| .|+
T Consensus 2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p--~i~W~k~g~~l---~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G-~Y~ 75 (95)
T cd05722 2 FLSEPSDIVAVRGGPVVLNCSAEGEPPP--KIEWKKDGVLL---NLVSDERRQQLPNGSLLITSVVHSKHNKPDEG-FYQ 75 (95)
T ss_pred cEECCCCeEEcCCCCEEEeeecccCCCC--EEEEEECCeEC---ccccCcceEEccCCeEEEeeeeccCCCCCcCE-EEE
Confidence 7889999999999999999999876544 89999999865 223345688888999999998 578985 999
Q ss_pred EEEeec-cCCcEEeCCCeEEEE
Q psy9140 85 CQTTHK-LTGERKISPPSQVMV 105 (114)
Q Consensus 85 C~a~n~-l~~~~~~s~~a~L~V 105 (114)
|.|.|. ++.. .|..++|.|
T Consensus 76 C~a~N~~~G~~--~s~~~~l~v 95 (95)
T cd05722 76 CVAQNDSLGSI--VSRTARLTV 95 (95)
T ss_pred EEEECCccCcE--EEeeeEEeC
Confidence 999999 8653 466777765
No 8
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.75 E-value=4.1e-18 Score=109.29 Aligned_cols=85 Identities=22% Similarity=0.336 Sum_probs=70.8
Q ss_pred ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEe
Q psy9140 9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTT 88 (114)
Q Consensus 9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~ 88 (114)
+|...|++..+.+|++|.|.|.+.+.+.| .+.|+|++..+ ..+.|+.+. +|.|.|.+++.+|+| .|+|.|.
T Consensus 1 ~~~~~p~~~~~~~G~~~~l~C~~~g~p~p--~v~W~k~g~~~-----~~~~~~~~~-~~~L~i~~~~~~D~G-~Y~C~a~ 71 (85)
T cd05728 1 EWLKVISDTEADIGSSLRWECKASGNPRP--AYRWLKNGQPL-----ASENRIEVE-AGDLRITKLSLSDSG-MYQCVAE 71 (85)
T ss_pred CccccCCccEEcCCCcEEEEEEeeEeCCC--EEEEEECCEEC-----CCCCeEEEe-CCEEEEeeCCHHHCE-EEEEEEE
Confidence 47789999999999999999999887655 89999999853 456677764 799999999999995 9999999
Q ss_pred eccCCcEEeCCCeEEEE
Q psy9140 89 HKLTGERKISPPSQVMV 105 (114)
Q Consensus 89 n~l~~~~~~s~~a~L~V 105 (114)
|.++. .+..+.|.|
T Consensus 72 N~~G~---~~~~~~l~V 85 (85)
T cd05728 72 NKHGT---IYASAELAV 85 (85)
T ss_pred CCCCe---EEEEEEEEC
Confidence 99874 455666654
No 9
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.74 E-value=8.3e-18 Score=105.33 Aligned_cols=74 Identities=24% Similarity=0.429 Sum_probs=62.6
Q ss_pred EEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCCcEEeCCCeEEE
Q psy9140 25 AVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVM 104 (114)
Q Consensus 25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~ 104 (114)
|+|.|.+.+++.| .++|+|++..+ ....+.||.+.++|.|.|.+++.+|+| .|+|.|.|.++. ..|..++|.
T Consensus 1 a~l~C~~~G~P~p--~v~W~k~~~~~---~~~~~~~~~~~~~g~L~i~~~~~~D~G-~Y~C~a~N~~G~--~~s~~a~l~ 72 (74)
T cd05738 1 ATMLCAASGNPDP--EITWFKDFLPV---DTTSNGRIKQLRSGALQIENSEESDQG-KYECVATNSAGT--RYSAPANLY 72 (74)
T ss_pred CEEEEEEeEecCC--EEEEEECCEEC---ccCCCCCEEEcCCcEEEECCCChhhCE-EEEEEEECCCCc--eEcccEEEE
Confidence 6899999887655 89999998854 222578999999999999999999995 999999999876 378899998
Q ss_pred Ee
Q psy9140 105 VS 106 (114)
Q Consensus 105 V~ 106 (114)
|+
T Consensus 73 v~ 74 (74)
T cd05738 73 VR 74 (74)
T ss_pred EC
Confidence 85
No 10
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.74 E-value=5.2e-17 Score=104.58 Aligned_cols=93 Identities=19% Similarity=0.315 Sum_probs=71.9
Q ss_pred cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeec-----CCCCCCee
Q psy9140 8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDT-----GMEDSYIR 82 (114)
Q Consensus 8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v-----~~~D~gg~ 82 (114)
+.|...|++..+.+|+++.|.|.+.+++.+ .++|+||+..+.........+..+.++|.|.+..+ +.+|+| .
T Consensus 2 P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p--~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G-~ 78 (100)
T cd07693 2 PRIVEHPSDLIVSKGDPATLNCKAEGRPTP--TIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEG-V 78 (100)
T ss_pred CeEEecCceeEEcCCCeEEEEeeCCcCCCC--EEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCE-E
Confidence 568899999999999999999999887555 89999999865221112345666778888765543 789995 9
Q ss_pred eEEEEeeccCCcEEeCCCeEEEE
Q psy9140 83 YYCQTTHKLTGERKISPPSQVMV 105 (114)
Q Consensus 83 Y~C~a~n~l~~~~~~s~~a~L~V 105 (114)
|+|.|.|.++.. .|..+.|.|
T Consensus 79 Y~C~a~N~~G~~--~s~~~~l~v 99 (100)
T cd07693 79 YVCVAHNSLGEA--VSRNASLEV 99 (100)
T ss_pred EEEEEEccccce--ecceEEEEe
Confidence 999999998753 566888876
No 11
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.73 E-value=2.4e-17 Score=105.83 Aligned_cols=86 Identities=20% Similarity=0.275 Sum_probs=69.1
Q ss_pred ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEe
Q psy9140 9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTT 88 (114)
Q Consensus 9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~ 88 (114)
.+...|++..+.+|.+|.|.|.+.+.+.+ .++|+|++..+ ....++. ..+|.|.|.+|+.+|+| .|+|.|.
T Consensus 3 ~~~~~p~~~~~~~g~~v~l~C~~~g~P~p--~v~W~k~~~~~-----~~~~~~~-~~~~~L~i~~v~~~D~G-~Y~C~a~ 73 (88)
T cd04968 3 IIVVFPKDTYALKGQNVTLECFALGNPVP--QIKWRKVDGSM-----PSSAEIS-MSGAVLKIPNIQFEDEG-TYECEAE 73 (88)
T ss_pred cEEECCCceEEeCCCcEEEEEEeeEeCCC--EEEEEECCCcC-----CCccEEE-EeCCEEEECCCCcccCE-EEEEEEE
Confidence 45678999999999999999999876555 89999988753 2233443 56899999999999995 9999999
Q ss_pred eccCCcEEeCCCeEEEEe
Q psy9140 89 HKLTGERKISPPSQVMVS 106 (114)
Q Consensus 89 n~l~~~~~~s~~a~L~V~ 106 (114)
|.++. .+..++|.|.
T Consensus 74 N~~G~---~~~~~~l~V~ 88 (88)
T cd04968 74 NIKGK---DTHQGRIYVQ 88 (88)
T ss_pred ECCCc---EEEEEEEEEC
Confidence 99875 4557788763
No 12
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.73 E-value=3.8e-17 Score=107.18 Aligned_cols=91 Identities=22% Similarity=0.349 Sum_probs=67.6
Q ss_pred ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--eeeeeeeeccCCcEEEcc---CCcEEEeecCCCCCCeee
Q psy9140 9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VSEARSIIHSGGRYSITT---AGALHIRDTGMEDSYIRY 83 (114)
Q Consensus 9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~~~~~~~~~~~r~~v~~---~G~L~I~~v~~~D~gg~Y 83 (114)
|....+++..+.+|.+|.|.|.+.+.+.| .++|+|++ ..+.......++||.+.. ++.|.|.+|+.+|+| .|
T Consensus 3 p~i~~~~~~~~~~G~~v~l~C~~~G~P~p--~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G-~Y 79 (98)
T cd05870 3 PHIIQLKNETTVENGAATLSCKAEGEPIP--EITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSG-RY 79 (98)
T ss_pred CEEEeeccEEEcCCCcEEEEEecccCCCC--eEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCE-EE
Confidence 44467899999999999999999887555 89999953 221100112357898864 358999999999995 99
Q ss_pred EEEEeeccCCcEEeCCCeEEEE
Q psy9140 84 YCQTTHKLTGERKISPPSQVMV 105 (114)
Q Consensus 84 ~C~a~n~l~~~~~~s~~a~L~V 105 (114)
+|.|.|.++. .+..+.|.|
T Consensus 80 ~C~A~N~~G~---~~~~~~l~~ 98 (98)
T cd05870 80 DCEAASRIGG---HQKSMYLDI 98 (98)
T ss_pred EEEEeccCCc---ceeEEEEeC
Confidence 9999999975 344556653
No 13
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.73 E-value=2.9e-17 Score=108.51 Aligned_cols=89 Identities=18% Similarity=0.335 Sum_probs=67.7
Q ss_pred ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEee-CCeeeeeeeeccCCcEEEccC----CcEEEeecCCCCCCeee
Q psy9140 9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLR-EGVSEARSIIHSGGRYSITTA----GALHIRDTGMEDSYIRY 83 (114)
Q Consensus 9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~k-d~~~~~~~~~~~~~r~~v~~~----G~L~I~~v~~~D~gg~Y 83 (114)
.-++.|.+..+.+|.+|.|.|.+.+.+.++ .++|+| ++..+ ...+.||.+..+ +.|.|.+++.+|+| .|
T Consensus 2 ~~~~~p~~~~v~~G~~v~l~C~v~G~P~~p-~i~W~~~~g~~l----~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G-~Y 75 (96)
T cd05865 2 QVDIVPSQGEISVGESKFFLCQVAGEAKDK-DISWFSPNGEKL----TPNQQRISVVRNDDYSSTLTIYNANIDDAG-IY 75 (96)
T ss_pred cEEEeCCccEECCCCeEEEEEEEeCCCCCC-EEEEECCCCcCc----cccCCeEEEEeCCCCceEEEEeccChhhCE-EE
Confidence 346789999999999999999998865322 899998 66532 122557776533 58999999999995 99
Q ss_pred EEEEeeccCCcEEeCCCeEEEE
Q psy9140 84 YCQTTHKLTGERKISPPSQVMV 105 (114)
Q Consensus 84 ~C~a~n~l~~~~~~s~~a~L~V 105 (114)
+|.|.|..+++ .+..++|.|
T Consensus 76 tC~A~N~~~g~--~~~s~~l~v 95 (96)
T cd05865 76 KCVVSNEDEGE--SEATVNVKI 95 (96)
T ss_pred EEEEEcCCCCc--EEEEEEEEE
Confidence 99999997553 444566655
No 14
>KOG3513|consensus
Probab=99.72 E-value=1.8e-17 Score=144.37 Aligned_cols=96 Identities=20% Similarity=0.385 Sum_probs=85.8
Q ss_pred ccceeecccee--EEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeE
Q psy9140 7 SSDYEINTGNT--FVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYY 84 (114)
Q Consensus 7 ~~~~~v~~~d~--~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~ 84 (114)
.+.|...|... .+..|.+|+|.|.+.+++++ +++|.|+++. +..++||.++++|+|.|.|++.+|+| .|+
T Consensus 424 ~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p--~~~W~k~~~~-----~~~~~r~~i~edGtL~I~n~t~~DaG-~Yt 495 (1051)
T KOG3513|consen 424 APVFPLNPVERKVMAVVGGTVTIDCKPFASPKP--KVSWLKGGEK-----LLQSGRIRILEDGTLEISNVTRSDAG-KYT 495 (1051)
T ss_pred CCCCCCCccceEEEEEeCCeEEEeeccCCCCcc--eEEEEcCCcc-----cccCceEEECCCCcEEecccCcccCc-EEE
Confidence 36788888887 79999999999999887666 8999999983 46899999999999999999999995 999
Q ss_pred EEEeeccCCcEEeCCCeEEEEeccccccc
Q psy9140 85 CQTTHKLTGERKISPPSQVMVSEIALPLK 113 (114)
Q Consensus 85 C~a~n~l~~~~~~s~~a~L~V~~~~~~~~ 113 (114)
|.|.|.++. +.+.++|.|+++++|..
T Consensus 496 C~A~N~~G~---a~~~~~L~Vkd~tri~~ 521 (1051)
T KOG3513|consen 496 CVAENKLGK---AESTGNLIVKDATRITL 521 (1051)
T ss_pred EEEEcccCc---cceEEEEEEecCceEEe
Confidence 999999986 68899999999999863
No 15
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.72 E-value=5.1e-17 Score=104.94 Aligned_cols=82 Identities=26% Similarity=0.425 Sum_probs=66.2
Q ss_pred CCeEEEEeecCCCCCCcceEEEeeCCeeeee-e--eeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCCcEEeC
Q psy9140 22 GNIAVLQCNIPAYNHNLLLIAWLREGVSEAR-S--IIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKIS 98 (114)
Q Consensus 22 G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~-~--~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s 98 (114)
|.+|.|+|.+.+.+.| .+.|+|++..++. + ......||.+.++|.|.|.+++.+|+| .|+|.|.|..+. .+
T Consensus 1 G~~v~L~C~~~g~P~p--~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G-~Y~C~a~N~~G~---~~ 74 (90)
T cd05726 1 GRTVTFQCEATGNPQP--AIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVG-YYICQTLNVAGS---IL 74 (90)
T ss_pred CCEEEEEEECCccCCC--EEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCE-EEEEEEEcCCCc---eE
Confidence 7899999999876555 8999999875421 1 123467999998999999999999995 999999999875 56
Q ss_pred CCeEEEEeccc
Q psy9140 99 PPSQVMVSEIA 109 (114)
Q Consensus 99 ~~a~L~V~~~~ 109 (114)
..+.|.|+++.
T Consensus 75 ~~~~l~V~~~~ 85 (90)
T cd05726 75 TKAYLEVTDVI 85 (90)
T ss_pred EEEEEEEeecc
Confidence 67999998753
No 16
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.71 E-value=5.6e-17 Score=107.64 Aligned_cols=86 Identities=21% Similarity=0.269 Sum_probs=67.8
Q ss_pred ceeec-cceeEEEeCCeEEEEeec-CCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEE
Q psy9140 9 DYEIN-TGNTFVLRGNIAVLQCNI-PAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQ 86 (114)
Q Consensus 9 ~~~v~-~~d~~v~~G~~AvL~C~~-~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~ 86 (114)
.|.-+ .++..|.+|+.++|.|.. .+++++ .+.|.+++... +..++|+.+.++|+|+|++|+.+|.|..|.|.
T Consensus 4 ~~~~~~~~~v~V~eG~~~~L~C~pP~g~P~P--~i~W~~~~~~~----i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~ 77 (95)
T cd05845 4 KWPKEKIRPVEVEEGDSVVLPCNPPKSAVPL--RIYWMNSDLLH----ITQDERVSMGQNGNLYFANVEEQDSHPDYICH 77 (95)
T ss_pred cCCccccceeEEecCCCEEEEecCCCCCCCC--EEEEECCCCcc----ccccccEEECCCceEEEEEEehhhCCCCeEEE
Confidence 34433 477889999999999985 555444 89999887542 34689999999999999999999995479999
Q ss_pred EeeccCCcEEeCCC
Q psy9140 87 TTHKLTGERKISPP 100 (114)
Q Consensus 87 a~n~l~~~~~~s~~ 100 (114)
|.|..++..+.+.+
T Consensus 78 a~~~~~~~~~~~~p 91 (95)
T cd05845 78 AHFPGLRTIVQKEP 91 (95)
T ss_pred EEcccccceEecCC
Confidence 99998776555543
No 17
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.71 E-value=6.7e-17 Score=104.77 Aligned_cols=80 Identities=20% Similarity=0.297 Sum_probs=68.0
Q ss_pred cccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccC---CcEEEeecCCCCCCee
Q psy9140 6 MSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTA---GALHIRDTGMEDSYIR 82 (114)
Q Consensus 6 v~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~---G~L~I~~v~~~D~gg~ 82 (114)
+.+.|...|++..+.+|+++.|.|.+.+++.+ .+.|+|++..+ ..+.||.+... +.|.|.+++.+|+| .
T Consensus 2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p--~v~W~k~g~~l-----~~~~~~~~~~~~~~~~L~i~~~~~~D~G-~ 73 (92)
T cd05747 2 LPATILTKPRSLTVSEGESARFSCDVDGEPAP--TVTWMREGQII-----VSSQRHQITSTEYKSTFEISKVQMSDEG-N 73 (92)
T ss_pred CCCcccccCccEEEeCCCcEEEEEEEeecCCC--EEEEEECCEEC-----CCCCcEEEEEcCCeeEEEECCCCcccCE-e
Confidence 45678889999999999999999999887655 89999998753 45678888653 58999999999995 9
Q ss_pred eEEEEeeccCC
Q psy9140 83 YYCQTTHKLTG 93 (114)
Q Consensus 83 Y~C~a~n~l~~ 93 (114)
|+|.|.|.++.
T Consensus 74 Y~C~a~N~~G~ 84 (92)
T cd05747 74 YTVVVENSEGK 84 (92)
T ss_pred EEEEEEcCCCC
Confidence 99999999864
No 18
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.71 E-value=5.2e-17 Score=101.07 Aligned_cols=73 Identities=19% Similarity=0.322 Sum_probs=60.8
Q ss_pred CCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCCcEEeCCCe
Q psy9140 22 GNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPS 101 (114)
Q Consensus 22 G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a 101 (114)
|.++.|.|.+.+.+.+ .++|+|++..+ ..+.|+.+.++|.|.|.+|+.+|+| .|+|.|.|.++. .+..+
T Consensus 1 G~~v~L~C~~~g~P~p--~v~W~k~~~~~-----~~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~a~N~~G~---~~~~~ 69 (73)
T cd04969 1 GGDVIIECKPKAAPKP--TISWSKGTELL-----TNSSRICIWPDGSLEILNVTKSDEG-KYTCFAENFFGK---ANSTG 69 (73)
T ss_pred CCeEEEEEeeeEcCCC--EEEEEECCEEc-----ccCCCEEECCCCeEEEccCChhHCE-EEEEEEECCCCc---eEEEE
Confidence 7899999999775444 89999999853 4678999999999999999999995 999999999875 35566
Q ss_pred EEEE
Q psy9140 102 QVMV 105 (114)
Q Consensus 102 ~L~V 105 (114)
.|.|
T Consensus 70 ~l~V 73 (73)
T cd04969 70 SLSV 73 (73)
T ss_pred EEEC
Confidence 6654
No 19
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.70 E-value=1.4e-16 Score=104.28 Aligned_cols=88 Identities=19% Similarity=0.330 Sum_probs=68.6
Q ss_pred cceeeccceeEEEeC---CeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecC-CCCCCeee
Q psy9140 8 SDYEINTGNTFVLRG---NIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTG-MEDSYIRY 83 (114)
Q Consensus 8 ~~~~v~~~d~~v~~G---~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~-~~D~gg~Y 83 (114)
+.|..+|++..+.+| ++|.|.|.+.+.+.+ .++|+|++..+ ....+.||.+. +|+|.|.++. .+|+| .|
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p--~i~W~~~g~~l---~~~~~~~~~~~-~g~L~I~~~~~~~D~G-~Y 74 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPA--TYRWKMNGTEI---KFAPESRYTLV-AGNLVINNPQKARDAG-SY 74 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCCC--EEEEEECCEEC---ccCCCceEEEE-CCeEEEccCCccCcCE-EE
Confidence 568899999988777 589999999876554 89999999864 22335677664 7999999976 59994 99
Q ss_pred EEEEeeccCCcEEeCCCeEEE
Q psy9140 84 YCQTTHKLTGERKISPPSQVM 104 (114)
Q Consensus 84 ~C~a~n~l~~~~~~s~~a~L~ 104 (114)
+|.|.|.++.. .|..|+|.
T Consensus 75 ~C~A~N~~G~~--~s~~a~l~ 93 (94)
T cd05850 75 QCLAINRCGTV--VSREANLR 93 (94)
T ss_pred EEEEEcCcCcE--EEEEEEEe
Confidence 99999998753 45566654
No 20
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.70 E-value=1.9e-16 Score=103.71 Aligned_cols=87 Identities=23% Similarity=0.380 Sum_probs=66.8
Q ss_pred cceeeccceeEEE---eCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecC-CCCCCeee
Q psy9140 8 SDYEINTGNTFVL---RGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTG-MEDSYIRY 83 (114)
Q Consensus 8 ~~~~v~~~d~~v~---~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~-~~D~gg~Y 83 (114)
+.|...|.+..+. +|+++.|.|.+.+.+.| .++|+||+..+ ....+.||.+ .+|.|.|.++. .+|+| .|
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P--~i~W~k~g~~l---~~~~~~~~~~-~~g~L~i~~~~~~~D~G-~Y 74 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVP--TYRWLRNGTEI---DTESDYRYSL-IDGNLIISNPSEVKDSG-RY 74 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCC--EEEEEECCeEC---ccCCCceEEe-eCCeEEEccCCccCcCE-EE
Confidence 5688899998765 47899999999887655 89999999864 1223456655 47999999985 69995 99
Q ss_pred EEEEeeccCCcEEeCCCeEE
Q psy9140 84 YCQTTHKLTGERKISPPSQV 103 (114)
Q Consensus 84 ~C~a~n~l~~~~~~s~~a~L 103 (114)
+|.|.|.++.. .|..+.|
T Consensus 75 ~C~A~N~~G~~--~S~~~~l 92 (94)
T cd05848 75 QCLATNSIGSI--LSREALL 92 (94)
T ss_pred EEEEEcCCCeE--EeccEEE
Confidence 99999998753 4555554
No 21
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.70 E-value=1.2e-16 Score=106.27 Aligned_cols=90 Identities=21% Similarity=0.294 Sum_probs=67.3
Q ss_pred cceeecccee-EEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEE
Q psy9140 8 SDYEINTGNT-FVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQ 86 (114)
Q Consensus 8 ~~~~v~~~d~-~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~ 86 (114)
+.|..++.+. .|.+|..|+|+|..|...++ +.+.|.|++..+.. ...+.||...++|+|+|++|+.+|+| .|+|.
T Consensus 3 ~~f~~~~~~~~~v~eG~~~~L~C~pP~g~P~-p~~~W~k~~~~~~~--~~d~r~~~~~~~G~L~fs~v~~~D~g-~Y~C~ 78 (96)
T cd05727 3 DEFPLEERDEVKVKEGWGVVLFCDPPPHYPD-LSYRWLLNEFPNFI--PEDGRRFVSQTNGNLYIAKVEASDRG-NYSCF 78 (96)
T ss_pred cccCcCCcCceeeeeCCcEEEeeCCCCCCCC-CEEEEEECCccccc--ccCCCeEEeCCCCcEEEeecCHhhCc-eeEEE
Confidence 4567666665 59999999999998664333 28999999875321 12334555556999999999999995 99999
Q ss_pred EeeccCCcEEeCCCe
Q psy9140 87 TTHKLTGERKISPPS 101 (114)
Q Consensus 87 a~n~l~~~~~~s~~a 101 (114)
|+|..+.+.+.+...
T Consensus 79 A~n~~~~~~~~~~~~ 93 (96)
T cd05727 79 VSSPSSTKSVFSKFI 93 (96)
T ss_pred EEecccCCcccCCce
Confidence 999988776666543
No 22
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.69 E-value=1.4e-16 Score=102.63 Aligned_cols=81 Identities=19% Similarity=0.292 Sum_probs=62.2
Q ss_pred CeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEc----cCCcEEEeecCCCCCCeeeEEEEeeccCCcEEeC
Q psy9140 23 NIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSIT----TAGALHIRDTGMEDSYIRYYCQTTHKLTGERKIS 98 (114)
Q Consensus 23 ~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~----~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s 98 (114)
++|.|.|.+.+.+.+.+.+.|.||+..+. ....+.||.+. ..|+|.|.+++.+|+| .|+|.|.|.++. .+
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~--~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~YtC~A~n~~g~---~~ 74 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPID--LDKPNGHYRRMEVKETIGDLVIVNAQLSHAG-TYTCTAQTVVDS---AS 74 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEcc--ccCCCCcEEEEEecceEeEEEEccCChhhCe-EEEEEEecCCCC---EE
Confidence 46899999987765543689999998651 11235566432 3589999999999995 999999999875 57
Q ss_pred CCeEEEEeccc
Q psy9140 99 PPSQVMVSEIA 109 (114)
Q Consensus 99 ~~a~L~V~~~~ 109 (114)
..++|.|..|+
T Consensus 75 ~~~~L~V~~~P 85 (85)
T cd05854 75 ASATLVVRGPP 85 (85)
T ss_pred EEEEEEEECCC
Confidence 78999999764
No 23
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.68 E-value=1.2e-16 Score=99.37 Aligned_cols=71 Identities=13% Similarity=0.345 Sum_probs=58.4
Q ss_pred eEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCCcEEeCCCeEE
Q psy9140 24 IAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQV 103 (114)
Q Consensus 24 ~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L 103 (114)
.|.|.|.+.+.+.| .++|+|++..+ ..+.||.+..+|.|.|.+++.+|+| .|+|.|.|.++. .+..++|
T Consensus 1 ~v~l~C~~~G~P~p--~v~W~k~g~~~-----~~~~~~~~~~~~~l~i~~v~~~D~G-~Y~C~A~N~~G~---~~~~~~L 69 (71)
T cd05723 1 DVIFECEVTGKPTP--TVKWVKNGDMV-----IPSDYFKIVKEHNLQVLGLVKSDEG-FYQCIAENDVGN---VQASAQL 69 (71)
T ss_pred CEEEEEEEEEeCCC--EEEEEECCeEC-----CCCCCEEEEecCCEEEEcCCcccCE-EEEEEEEcCCCE---EEEEEEE
Confidence 47899999887555 89999999854 3467888888999999999999995 999999999875 4556666
Q ss_pred EE
Q psy9140 104 MV 105 (114)
Q Consensus 104 ~V 105 (114)
.|
T Consensus 70 ~V 71 (71)
T cd05723 70 II 71 (71)
T ss_pred EC
Confidence 54
No 24
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.68 E-value=1.8e-16 Score=99.44 Aligned_cols=75 Identities=23% Similarity=0.400 Sum_probs=59.0
Q ss_pred CCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCCcEEeCCCe
Q psy9140 22 GNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPS 101 (114)
Q Consensus 22 G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a 101 (114)
|+++.|.|.+.+.+.| .++|+||+..+. ....+.|+.+ .+|.|.|.+++.+|+| .|+|.|.|..+. .++.+
T Consensus 1 G~~v~l~C~~~G~P~p--~i~W~k~g~~i~--~~~~~~~~~~-~~~~L~I~~~~~~D~G-~Y~C~a~N~~G~---~~~~~ 71 (76)
T cd05867 1 GETARLDCQVEGIPTP--NITWSINGAPIE--GTDPDPRRHV-SSGALILTDVQPSDTA-VYQCEARNRHGN---LLANA 71 (76)
T ss_pred CCeEEEEEEeeEeCCC--eEEEEECCEECC--CCCCCceEEe-eCCEEEECCCChhhCE-EEEEEEECCCCe---EEEEE
Confidence 7899999999887555 899999998642 1122346655 5799999999999995 999999999865 45567
Q ss_pred EEEE
Q psy9140 102 QVMV 105 (114)
Q Consensus 102 ~L~V 105 (114)
.|.|
T Consensus 72 ~l~V 75 (76)
T cd05867 72 HVHV 75 (76)
T ss_pred EEEE
Confidence 7766
No 25
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.68 E-value=1.8e-16 Score=102.63 Aligned_cols=87 Identities=17% Similarity=0.289 Sum_probs=65.6
Q ss_pred eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccC---CcEEEeecCCCCCCeeeEEEEe
Q psy9140 12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTA---GALHIRDTGMEDSYIRYYCQTT 88 (114)
Q Consensus 12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~---G~L~I~~v~~~D~gg~Y~C~a~ 88 (114)
..+++..+.+|++|.|.|.+.+++.+ .+.|+|++..+.......++||.+..+ +.|.|.+|+.+|+| .|+|.|.
T Consensus 6 ~~~~~~~~~~g~~v~l~C~~~g~p~p--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~ 82 (96)
T cd05732 6 TYLENQTAVELEQITLTCEAEGDPIP--EITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAG-RYDCEAS 82 (96)
T ss_pred eecCceeEecCCcEEEEEEEeEcCCC--cEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCE-EeEEEEE
Confidence 46778999999999999999876544 899999986432111123568877543 48999999999995 9999999
Q ss_pred eccCCcEEeCCCeEEE
Q psy9140 89 HKLTGERKISPPSQVM 104 (114)
Q Consensus 89 n~l~~~~~~s~~a~L~ 104 (114)
|.++.. +..+.|.
T Consensus 83 N~~G~~---~~s~~l~ 95 (96)
T cd05732 83 NRIGGD---QQSMYLE 95 (96)
T ss_pred eCCCCc---EEEEEEe
Confidence 998753 4455554
No 26
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.68 E-value=9.4e-17 Score=101.71 Aligned_cols=71 Identities=21% Similarity=0.274 Sum_probs=57.1
Q ss_pred EEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccC--C--cEEEeecCCCCCCeeeEEEEeeccCCcEEeCCC
Q psy9140 25 AVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTA--G--ALHIRDTGMEDSYIRYYCQTTHKLTGERKISPP 100 (114)
Q Consensus 25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~--G--~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~ 100 (114)
+.|+|.+.+.++| .|.|+||+..+ ...++||.+..+ | +|.|.+++.+|+| .|+|.|.|.++. .+..
T Consensus 1 v~l~C~v~G~P~P--~i~W~k~~~~i----~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G-~Y~C~A~N~~G~---~~~~ 70 (75)
T cd05892 1 VKLECQISAIPPP--KIFWKRNNEMV----QYNTDRISLYQDNSGRVTLLIKNVNKKDAG-WYTVSAVNEAGV---ATCH 70 (75)
T ss_pred CEEEEEEEecCCC--eEEEEECCEEC----cCCCCeEEEEEcCCCcEEEEECCCChhhCE-EEEEEEEcCcCe---EEEE
Confidence 4799999887666 89999999864 123568888653 3 6999999999995 999999999875 5667
Q ss_pred eEEEE
Q psy9140 101 SQVMV 105 (114)
Q Consensus 101 a~L~V 105 (114)
|+|.|
T Consensus 71 a~L~V 75 (75)
T cd05892 71 ARLDV 75 (75)
T ss_pred EEEeC
Confidence 88875
No 27
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.68 E-value=2.8e-16 Score=102.89 Aligned_cols=94 Identities=13% Similarity=0.160 Sum_probs=68.7
Q ss_pred cccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccC---CcEEEeecCCCCCCee
Q psy9140 6 MSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTA---GALHIRDTGMEDSYIR 82 (114)
Q Consensus 6 v~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~---G~L~I~~v~~~D~gg~ 82 (114)
|.|.+...+.+..+..|..+.|.|.+.+.+.| .++|.|++..+.......++|+.+..+ +.|.|.+++.+|+| .
T Consensus 1 ~~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P--~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G-~ 77 (97)
T cd05869 1 AKPKITYVENQTAMELEEQITLTCEASGDPIP--SITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAG-E 77 (97)
T ss_pred CCceEEEccCceEEEcCCCEEEEEEeeEeCCC--EEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCE-E
Confidence 34667777766666568999999999876554 899999887542111223567877543 58999999999995 9
Q ss_pred eEEEEeeccCCcEEeCCCeEEEE
Q psy9140 83 YYCQTTHKLTGERKISPPSQVMV 105 (114)
Q Consensus 83 Y~C~a~n~l~~~~~~s~~a~L~V 105 (114)
|+|.|.|.++. .+..+.|.|
T Consensus 78 Y~C~A~N~~G~---~~~~~~l~v 97 (97)
T cd05869 78 YLCTASNTIGQ---DSQSMYLEV 97 (97)
T ss_pred EEEEEecCCCC---eeEEEEEEC
Confidence 99999999875 344556554
No 28
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.68 E-value=5e-16 Score=101.78 Aligned_cols=87 Identities=18% Similarity=0.300 Sum_probs=67.8
Q ss_pred cceeeccceeEEEeCC---eEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecC-CCCCCeee
Q psy9140 8 SDYEINTGNTFVLRGN---IAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTG-MEDSYIRY 83 (114)
Q Consensus 8 ~~~~v~~~d~~v~~G~---~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~-~~D~gg~Y 83 (114)
|.|..+|.+..+-+|. ++.|.|.+.+.+.| .++|+|++..+ ...+.||.+ .+|.|.|.++. .+|+| .|
T Consensus 2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P--~i~W~k~~~~i----~~~~~~~~~-~~g~L~I~~~~~~~D~G-~Y 73 (93)
T cd05849 2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFP--IYKWRKNNLDI----DLTNDRYSM-VGGNLVINNPDKYKDAG-RY 73 (93)
T ss_pred CEEEECCCCEEecCCccCCeEEEeCcCccCCCC--EEEEEECCEEc----cCCCCeEEE-ECCEEEECcCCcCCCCE-EE
Confidence 5688889988766654 89999999887555 89999999854 123568865 58999999985 69995 99
Q ss_pred EEEEeeccCCcEEeCCCeEEE
Q psy9140 84 YCQTTHKLTGERKISPPSQVM 104 (114)
Q Consensus 84 ~C~a~n~l~~~~~~s~~a~L~ 104 (114)
+|.|.|.++.. .|..|+|.
T Consensus 74 ~C~A~N~~G~~--~s~~a~l~ 92 (93)
T cd05849 74 VCIVSNIYGKV--RSREATLS 92 (93)
T ss_pred EEEEEeCcceE--EEccEEEe
Confidence 99999998753 45577774
No 29
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.68 E-value=2.4e-16 Score=103.50 Aligned_cols=77 Identities=22% Similarity=0.292 Sum_probs=63.4
Q ss_pred ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCC---cEEEeecCCCCCCeeeEE
Q psy9140 9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAG---ALHIRDTGMEDSYIRYYC 85 (114)
Q Consensus 9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G---~L~I~~v~~~D~gg~Y~C 85 (114)
+..+.|++..+.+|++|.|.|.+.+.+ . .+.|+|++.. .+..+.||.+..+| .|.|++++.+|+| .|+|
T Consensus 2 ~~~~~~~~~~v~~G~~v~l~C~~~G~P--~-~v~W~k~~g~----~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G-~Y~C 73 (92)
T cd05866 2 QVSISLSKVELSVGESKFFTCTAIGEP--E-SIDWYNPQGE----KIVSSQRVVVQKEGVRSRLTIYNANIEDAG-IYRC 73 (92)
T ss_pred eEEEEecceEEcCCCeEEEEEEEEEeC--C-eEEEEeCCCe----EecCCCCEEEEeCCCeeEEEEecCChHHCE-EEEE
Confidence 346889999999999999999997753 3 6899985442 23456899998777 7999999999995 9999
Q ss_pred EEeeccCC
Q psy9140 86 QTTHKLTG 93 (114)
Q Consensus 86 ~a~n~l~~ 93 (114)
.|.|..+.
T Consensus 74 ~A~N~~G~ 81 (92)
T cd05866 74 QATDAKGQ 81 (92)
T ss_pred EEEcCCCc
Confidence 99999754
No 30
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.67 E-value=3.5e-16 Score=102.15 Aligned_cols=83 Identities=18% Similarity=0.309 Sum_probs=67.6
Q ss_pred eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEcc-CCcEEEeecCCCCCCeeeEEEEeec
Q psy9140 12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT-AGALHIRDTGMEDSYIRYYCQTTHK 90 (114)
Q Consensus 12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~-~G~L~I~~v~~~D~gg~Y~C~a~n~ 90 (114)
..++++.+.+|+++.|.|.+.+. .| .+.|+|++..+ ..+|+.+.. ++.|.|.+++.+|+| .|+|.|.|.
T Consensus 8 ~~~~~~~v~~g~~v~l~C~a~g~-~p--~i~W~kng~~l------~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~N~ 77 (91)
T cd05740 8 NSVGNQPPEDNQPVTLTCEAEGQ-AT--YIWWVNNGSLL------VPPRLQLSNDNRTLTFNNVTRSDTG-HYQCEASNE 77 (91)
T ss_pred cccCccccccCCcEEEEEEeCCC-CC--EEEEEECCEEC------CCCCEEEeCCCCEEEECcCChhhCE-EEEEEEEcC
Confidence 45677899999999999999887 54 89999998753 245676654 469999999999995 999999999
Q ss_pred cCCcEEeCCCeEEEEe
Q psy9140 91 LTGERKISPPSQVMVS 106 (114)
Q Consensus 91 l~~~~~~s~~a~L~V~ 106 (114)
++.. .|.+..|.|.
T Consensus 78 ~G~~--~S~~~~L~V~ 91 (91)
T cd05740 78 VSNM--TSDPYILNVN 91 (91)
T ss_pred CCCE--EeeeEEEEeC
Confidence 8763 5668888874
No 31
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.67 E-value=2.7e-16 Score=100.48 Aligned_cols=81 Identities=22% Similarity=0.397 Sum_probs=61.3
Q ss_pred CeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcE----EEccCCcEEEeecCCCCCCeeeEEEEeeccCCcEEeC
Q psy9140 23 NIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRY----SITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKIS 98 (114)
Q Consensus 23 ~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~----~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s 98 (114)
+++.|.|.+.+.+.+.+.+.|+||+..+.. ...+.+| ....+|.|.|.+++.+|+| .|+|.|.|.++. .+
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~--~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~n~~g~---~~ 74 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDF--DKDGGHYRRVGGKDSNGDLMIRNAQLKHAG-KYTCTAQTVVDS---LS 74 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeec--cCCCccEEEEecccccceEEEccCCHHhCe-eeEEEEecCCCc---EE
Confidence 468999999776554336799999986521 1223333 2345789999999999995 999999999865 56
Q ss_pred CCeEEEEeccc
Q psy9140 99 PPSQVMVSEIA 109 (114)
Q Consensus 99 ~~a~L~V~~~~ 109 (114)
..++|.|..|+
T Consensus 75 ~~~~l~V~~pP 85 (85)
T cd04970 75 ASADLIVRGPP 85 (85)
T ss_pred EEEEEEEECCC
Confidence 78999999874
No 32
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.66 E-value=1.4e-16 Score=100.77 Aligned_cols=71 Identities=24% Similarity=0.340 Sum_probs=57.8
Q ss_pred EEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCC----cEEEeecCCCCCCeeeEEEEeeccCCcEEeCCC
Q psy9140 25 AVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAG----ALHIRDTGMEDSYIRYYCQTTHKLTGERKISPP 100 (114)
Q Consensus 25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G----~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~ 100 (114)
+.|+|.+.+++.| .|.|+||+..+ .....||.+..++ .|.|.+++.+|+| .|+|.|.|.++. .++.
T Consensus 1 v~l~C~v~G~P~P--~v~W~k~~~~l----~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~A~N~~G~---~~~~ 70 (75)
T cd05893 1 VRLECRVSGVPHP--QIFWKKENESL----THNTDRVSMHQDNCGYICLLIQGATKEDAG-WYTVSAKNEAGI---VSCT 70 (75)
T ss_pred CEEEEEEeEecCC--EEEEEECCEEC----CCCCCeEEEEEcCCCEEEEEECCCCHHHCE-EEEEEEEcCCCE---EEEE
Confidence 4799999887666 89999999864 2345788887554 6999999999995 999999999875 5667
Q ss_pred eEEEE
Q psy9140 101 SQVMV 105 (114)
Q Consensus 101 a~L~V 105 (114)
|+|.|
T Consensus 71 a~L~V 75 (75)
T cd05893 71 ARLDV 75 (75)
T ss_pred EEEeC
Confidence 88875
No 33
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.66 E-value=4.8e-16 Score=100.85 Aligned_cols=73 Identities=21% Similarity=0.375 Sum_probs=59.6
Q ss_pred ccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccC-C---cEEEeecCCCCCCeeeEEEEe
Q psy9140 13 NTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTA-G---ALHIRDTGMEDSYIRYYCQTT 88 (114)
Q Consensus 13 ~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~-G---~L~I~~v~~~D~gg~Y~C~a~ 88 (114)
.|....+.+|+++.|.|.+.+.+.| .++|+|++..+ ..+.||.+... | .|.|.+++.+|+| .|+|.|.
T Consensus 7 lp~~v~v~~G~~v~L~C~v~G~P~p--~v~W~k~g~~l-----~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~ 78 (92)
T cd05737 7 LPDVVTIMEGKTLNLTCTVFGDPDP--EVSWLKNDQAL-----ALSDHYNVKVEQGKYASLTIKGVSSEDSG-KYGIVVK 78 (92)
T ss_pred CCceEEEeCCCcEEEEEEEEecCCC--eEEEEECCEEC-----ccCCCEEEEEcCCCEEEEEEccCChhhCE-EEEEEEE
Confidence 4666789999999999999877555 89999999854 44567776432 3 6999999999995 9999999
Q ss_pred eccCC
Q psy9140 89 HKLTG 93 (114)
Q Consensus 89 n~l~~ 93 (114)
|.++.
T Consensus 79 N~~G~ 83 (92)
T cd05737 79 NKYGG 83 (92)
T ss_pred ECCCc
Confidence 99875
No 34
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.66 E-value=6.8e-16 Score=100.59 Aligned_cols=84 Identities=18% Similarity=0.269 Sum_probs=63.2
Q ss_pred eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEee-CCeeeeeeeeccCCcEEEccCC----cEEEeecCCCCCCeeeE
Q psy9140 10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLR-EGVSEARSIIHSGGRYSITTAG----ALHIRDTGMEDSYIRYY 84 (114)
Q Consensus 10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~k-d~~~~~~~~~~~~~r~~v~~~G----~L~I~~v~~~D~gg~Y~ 84 (114)
..+.|++..+.+|++|.|.|.+.+. |+ .++|++ ++..+ ...+|+.+..++ .|.|.+++.+|+| .|+
T Consensus 3 v~v~p~~~~v~~G~~~~l~C~~~G~--p~-~i~W~~~~~~~~-----~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~ 73 (92)
T cd04977 3 VDIVPSQGEISVGESKFFLCQVIGE--PK-DISWFSPNGEKL-----VTQQQISVVQNDDVRSTLTIYNANIEDAG-IYK 73 (92)
T ss_pred EEEecCcEEECCCCeEEEEEEeEee--CC-eEEEECCCCCEe-----ccCCCEEEEeCCCCEEEEEEecCCcccCE-EEE
Confidence 4688999999999999999999775 23 799998 45432 234565555444 7999999999995 999
Q ss_pred EEEeeccCCcEEeCCCeEEE
Q psy9140 85 CQTTHKLTGERKISPPSQVM 104 (114)
Q Consensus 85 C~a~n~l~~~~~~s~~a~L~ 104 (114)
|.|.|.+++. .+..++|.
T Consensus 74 C~A~N~~g~~--~~~sv~l~ 91 (92)
T cd04977 74 CVATDAKGTE--SEATVNLK 91 (92)
T ss_pred EEEEcCCCCc--ceeEEEEE
Confidence 9999987653 33345554
No 35
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.65 E-value=1.2e-15 Score=100.11 Aligned_cols=81 Identities=20% Similarity=0.295 Sum_probs=62.0
Q ss_pred ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccC-------CcEEEeecCCCCCCe
Q psy9140 9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTA-------GALHIRDTGMEDSYI 81 (114)
Q Consensus 9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~-------G~L~I~~v~~~D~gg 81 (114)
|.-..+....+.+|.+|.|.|.+.+++.|. .+.|.+++..+ ....++||.+..+ +.|.|.+++.+|..|
T Consensus 3 p~i~~~~~~~~~~G~~v~L~C~~~g~P~P~-~v~W~~~~~~i---~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G 78 (98)
T cd05758 3 PIITSEATQYAILGDKGRVECFIFSTPPPD-RIVWTWKENEL---ESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQT 78 (98)
T ss_pred CeEcCCCcEEEeCCCcEEEEEEEcccCCCC-EeEEEECCEEc---cCCCCCCEEEEEecCCCceEEEEEECCccccccce
Confidence 333456677899999999999998764441 69999999854 2223579988754 379999999966335
Q ss_pred eeEEEEeeccCC
Q psy9140 82 RYYCQTTHKLTG 93 (114)
Q Consensus 82 ~Y~C~a~n~l~~ 93 (114)
.|+|.|.|.++.
T Consensus 79 ~Y~C~A~N~~G~ 90 (98)
T cd05758 79 SYNCTAWNSFGS 90 (98)
T ss_pred eEEEEEEcCCCc
Confidence 999999999874
No 36
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.65 E-value=8.1e-16 Score=99.30 Aligned_cols=71 Identities=20% Similarity=0.262 Sum_probs=58.6
Q ss_pred eeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEcc---CCcEEEeecCCCCCCeeeEEEEeeccC
Q psy9140 16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT---AGALHIRDTGMEDSYIRYYCQTTHKLT 92 (114)
Q Consensus 16 d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~---~G~L~I~~v~~~D~gg~Y~C~a~n~l~ 92 (114)
...+.+|+++.|.|.+.+.++| .+.|+|++..+ ...++||.+.. .+.|.|.+++.+|+| .|+|.|.|.++
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P--~v~W~k~~~~i----~~~~~r~~~~~~~~~~~L~I~~~~~~D~G-~Y~c~a~N~~G 76 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAP--TVTWSRGDKAF----TETEGRVRVESYKDLSSFVIEGAEREDEG-VYTITVTNPVG 76 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCC--eEEEEECCEEC----ccCCCeEEEEEcCCeEEEEECCCccCcCE-EEEEEEEeCCC
Confidence 3478999999999999887655 89999999864 22356888753 357999999999995 99999999987
Q ss_pred C
Q psy9140 93 G 93 (114)
Q Consensus 93 ~ 93 (114)
.
T Consensus 77 ~ 77 (86)
T cd05894 77 E 77 (86)
T ss_pred c
Confidence 4
No 37
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.65 E-value=5.3e-16 Score=95.41 Aligned_cols=69 Identities=22% Similarity=0.379 Sum_probs=56.3
Q ss_pred EEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCCcEEeCCCeEEE
Q psy9140 25 AVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVM 104 (114)
Q Consensus 25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~ 104 (114)
|.|+|.+.+.+.| .+.|+|++..+ ..+|+.+.+++.|.|.+++.+|+| .|+|.|.|.++. .+..++|.
T Consensus 1 v~l~C~~~g~P~p--~v~W~k~~~~~------~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~N~~G~---~~~~~~l~ 68 (69)
T cd05725 1 VEFQCEVGGDPVP--TVLWRKEDGEL------PKGRAEILDDKSLKIRNVTAGDEG-SYTCEAENMVGK---IEASASLT 68 (69)
T ss_pred CEEEEECccCCCC--EEEEEECCccC------CCCcEEEeeCCEEEECcCChhHCE-EEEEEEEcCCCc---EEEEEEEE
Confidence 5799999886555 89999997642 457888888999999999999995 999999999875 35566665
Q ss_pred E
Q psy9140 105 V 105 (114)
Q Consensus 105 V 105 (114)
|
T Consensus 69 V 69 (69)
T cd05725 69 V 69 (69)
T ss_pred C
Confidence 4
No 38
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.64 E-value=7.8e-16 Score=96.99 Aligned_cols=75 Identities=19% Similarity=0.274 Sum_probs=57.5
Q ss_pred CCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCCcEEeCCCe
Q psy9140 22 GNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPS 101 (114)
Q Consensus 22 G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a 101 (114)
|..+.|.|.+.+++.| .++|+|++..+. .....+.....++.|.|.+++.+|+| .|+|.|.|.++. .++.+
T Consensus 1 g~~~~l~C~a~G~P~P--~i~W~k~g~~i~---~~~~~~~~~~~~~~l~i~~v~~~D~G-~Y~C~A~N~~G~---~~~~~ 71 (76)
T cd05868 1 GEDGTLICRANGNPKP--SISWLTNGVPIE---IAPTDPSRKVDGDTIIFSKVQERSSA-VYQCNASNEYGY---LLANA 71 (76)
T ss_pred CCCEEEEEEeeEeCCC--eEEEEECCEEcc---ccCCCceEEecCCEEEECCCCHhhCE-EEEEEEEcCCCE---EEEEE
Confidence 7899999999887665 899999998652 11222222334568999999999995 999999999875 56677
Q ss_pred EEEE
Q psy9140 102 QVMV 105 (114)
Q Consensus 102 ~L~V 105 (114)
.|.|
T Consensus 72 ~l~v 75 (76)
T cd05868 72 FVNV 75 (76)
T ss_pred EEEe
Confidence 7776
No 39
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.64 E-value=1.1e-15 Score=99.00 Aligned_cols=78 Identities=22% Similarity=0.259 Sum_probs=62.0
Q ss_pred CCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEcc--C-----CcEEEeecCCCCCCeeeEEEEeeccCCc
Q psy9140 22 GNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT--A-----GALHIRDTGMEDSYIRYYCQTTHKLTGE 94 (114)
Q Consensus 22 G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~--~-----G~L~I~~v~~~D~gg~Y~C~a~n~l~~~ 94 (114)
|+++.|.|.+.+.+++ .+.|+|++..+ .....||.+.. . ..|.|.++..+|+| .|+|.|.|.++.
T Consensus 1 g~~~~l~C~~~g~p~~--~i~W~k~~~~i----~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G-~YtC~A~N~~G~- 72 (88)
T cd05735 1 GQKKEMSCTAHGEKPI--IVRWEKEDRII----NPEMSRYLVSTKEVGDEVISTLQILPTVREDSG-FFSCHAINSYGE- 72 (88)
T ss_pred CCeEEEEEEEECCCCC--EEEEeeCCEEC----CCCCCcEEEEEecCCCcEEEEEEECCCCcccCE-EEEEEEEcCCCc-
Confidence 8899999999875433 89999999753 12346887753 1 46999999999995 999999999975
Q ss_pred EEeCCCeEEEEeccc
Q psy9140 95 RKISPPSQVMVSEIA 109 (114)
Q Consensus 95 ~~~s~~a~L~V~~~~ 109 (114)
.+..+.|.|++++
T Consensus 73 --~~~~~~L~V~~~P 85 (88)
T cd05735 73 --DRGIIQLTVQEPP 85 (88)
T ss_pred --ceEEEEEEEeCCC
Confidence 4668899998765
No 40
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.64 E-value=1e-15 Score=98.85 Aligned_cols=83 Identities=16% Similarity=0.243 Sum_probs=63.3
Q ss_pred eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEE---ccCCcEEEeecCCCCCCeeeEEEEe
Q psy9140 12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSI---TTAGALHIRDTGMEDSYIRYYCQTT 88 (114)
Q Consensus 12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v---~~~G~L~I~~v~~~D~gg~Y~C~a~ 88 (114)
..|++..+.+|++|.|.|.+.+++.| .+.|+||+..+ ....++.. ...+.|.|++++.+|. |.|+|.|.
T Consensus 5 ~~p~~~~v~~G~~v~l~C~~~G~P~p--~v~W~~~g~~~-----~~~~~~~~~~~~~~~~L~I~~v~~~D~-g~Y~C~A~ 76 (90)
T cd04972 5 DGPNATVVYEGGTATIRCTAEGSPLP--KVEWIIAGLIV-----IQTRTDTLETTVDIYNLQLSNITSETQ-TTVTCTAE 76 (90)
T ss_pred cCCcCEEEcCCCcEEEEEEEEEcCCC--eEEEEECCEEc-----cCCccEEEEecCCEEEEEEecCCcccC-EEEEEEEE
Confidence 45777889999999999999887655 89999999854 22233221 3356899999999997 59999999
Q ss_pred eccCCcEEeCCCeEEEE
Q psy9140 89 HKLTGERKISPPSQVMV 105 (114)
Q Consensus 89 n~l~~~~~~s~~a~L~V 105 (114)
|.++. .+..++|.|
T Consensus 77 N~~G~---~~~~~~L~v 90 (90)
T cd04972 77 NPVGQ---ANVSVQVTV 90 (90)
T ss_pred CCCCc---eeEEEEEeC
Confidence 99875 344566653
No 41
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.64 E-value=1.4e-15 Score=100.39 Aligned_cols=87 Identities=15% Similarity=0.221 Sum_probs=64.3
Q ss_pred eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeee---eeccCCcEEEcc----CCcEEEeecCCCCCCeeeE
Q psy9140 12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARS---IIHSGGRYSITT----AGALHIRDTGMEDSYIRYY 84 (114)
Q Consensus 12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~---~~~~~~r~~v~~----~G~L~I~~v~~~D~gg~Y~ 84 (114)
+.-+|..|.+|++|.|+|.+.+.+.+ .+.|+|++..++.. ....+.||.+.. ++.|.|+||+.+|+| .|+
T Consensus 2 ~~~~~~tv~~G~tv~L~C~v~g~~~~--~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G-~Yt 78 (95)
T cd05882 2 PVTQDETVAVGGTVTLKCGVKEHDNS--SLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEG-EYT 78 (95)
T ss_pred cccccEEEecCCcEEEEEEEeCCCCC--eEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCE-EEE
Confidence 34578899999999999999876544 89999998754321 123568888652 358999999999995 999
Q ss_pred EEEeeccCCcEEeCCCeEEEE
Q psy9140 85 CQTTHKLTGERKISPPSQVMV 105 (114)
Q Consensus 85 C~a~n~l~~~~~~s~~a~L~V 105 (114)
|.+..... .+..|.|.|
T Consensus 79 C~~~t~~~----~~~~~~~~v 95 (95)
T cd05882 79 CSIFTMPV----RTAKATVTV 95 (95)
T ss_pred EEEEeecc----ccEEEEEEC
Confidence 99998322 244555543
No 42
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.64 E-value=9.7e-16 Score=97.54 Aligned_cols=87 Identities=20% Similarity=0.407 Sum_probs=69.2
Q ss_pred cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEcc---CCcEEEeecCCCCCCeeeE
Q psy9140 8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT---AGALHIRDTGMEDSYIRYY 84 (114)
Q Consensus 8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~---~G~L~I~~v~~~D~gg~Y~ 84 (114)
|.|...|.+..+.+|+++.|.|.+.+.+.+ .++|.+++..+ ..+.||.+.. +..|.|.+++.+|+| .|+
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~--~v~W~~~~~~l-----~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~ 72 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPP--TVTWYKNGRPL-----TSSQRYQIESDGGSSSLTIKNVTREDAG-TYT 72 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSS--EEEEEETTEEE-----ESSSSEEEEEETTEEEEEESSESGGGSE-EEE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCC--cccccccccce-----eeeeeeeeecccceeEEccCCCChhhCE-EEE
Confidence 468889999999999999999999765333 89999998854 4577887753 457999999999995 999
Q ss_pred EEEeeccCCcEEeCCCeEEEE
Q psy9140 85 CQTTHKLTGERKISPPSQVMV 105 (114)
Q Consensus 85 C~a~n~l~~~~~~s~~a~L~V 105 (114)
|.|.|..+. .+..++|.|
T Consensus 73 C~~~n~~g~---~~~~~~l~V 90 (90)
T PF07679_consen 73 CVASNSSGE---ATASVNLTV 90 (90)
T ss_dssp EEEEETTEE---EEEEEEEEE
T ss_pred EEEEECCCE---EEEEEEEEC
Confidence 999998542 344556554
No 43
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.64 E-value=1.1e-15 Score=102.01 Aligned_cols=81 Identities=15% Similarity=0.107 Sum_probs=63.2
Q ss_pred ceeEEEeCCeEEEEeecCC-CCCCcceEEEeeCCeeeeeeeeccCCcEEEcc--------CCcEEEeecCCCCCCeeeEE
Q psy9140 15 GNTFVLRGNIAVLQCNIPA-YNHNLLLIAWLREGVSEARSIIHSGGRYSITT--------AGALHIRDTGMEDSYIRYYC 85 (114)
Q Consensus 15 ~d~~v~~G~~AvL~C~~~~-~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~--------~G~L~I~~v~~~D~gg~Y~C 85 (114)
++..+.+|..+.|.|.+.+ .++| .+.|+|||..| ..+.++.+.. .+.|.|.+|+.+|+| .|+|
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p--~v~W~Kdg~~i-----~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G-~Ytc 82 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPP--HINWTYDNRTL-----TNKLTEIVTSENESEYRYVSELKLVRLKESEAG-TYTF 82 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCC--ccEEEeCCeeC-----CCCcceeEEEeccCcceEEEEEEEeecCHhhCe-eEEE
Confidence 3678999999999999988 4433 89999999864 2344544432 267999999999995 9999
Q ss_pred EEeeccCCcEEeCCCeEEEEe
Q psy9140 86 QTTHKLTGERKISPPSQVMVS 106 (114)
Q Consensus 86 ~a~n~l~~~~~~s~~a~L~V~ 106 (114)
.|.|.++. .+..+.|.|+
T Consensus 83 ~A~N~~G~---~~~t~~L~V~ 100 (101)
T cd04975 83 LASNSDAS---KSLTFELYVN 100 (101)
T ss_pred EEECCCcc---EEEEEEEEEE
Confidence 99999874 4557777775
No 44
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.63 E-value=1.9e-15 Score=98.11 Aligned_cols=84 Identities=19% Similarity=0.341 Sum_probs=65.8
Q ss_pred ccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCC-cEEEeecCCCCCCeeeEEEEeecc
Q psy9140 13 NTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAG-ALHIRDTGMEDSYIRYYCQTTHKL 91 (114)
Q Consensus 13 ~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G-~L~I~~v~~~D~gg~Y~C~a~n~l 91 (114)
.+.+..+.+|.+|.|.|.+.+++.+ .+.|.|++..+. ..+.||.+..+| .|.|.+++.+|+| .|+|.|.|.+
T Consensus 9 ~~~~~~~~~G~~v~L~C~~~g~P~p--~v~W~k~g~~~~----~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~N~~ 81 (95)
T cd05730 9 SEVNATANLGQSVTLACDADGFPEP--TMTWTKDGEPIE----SGEEKYSFNEDGSEMTILDVDKLDEA-EYTCIAENKA 81 (95)
T ss_pred cccceEEeCCCCEEEEEeccEeCCC--EEEEEECCEECc----CCCCEEEEeCCCCEEEECCCChhhCE-EEEEEEEcCC
Confidence 3456678999999999999887555 899999998541 124678776665 5999999999995 9999999998
Q ss_pred CCcEEeCCCeEEEEe
Q psy9140 92 TGERKISPPSQVMVS 106 (114)
Q Consensus 92 ~~~~~~s~~a~L~V~ 106 (114)
+. .+..+.|.|.
T Consensus 82 G~---~~~~~~L~V~ 93 (95)
T cd05730 82 GE---QEAEIHLKVF 93 (95)
T ss_pred Ce---EEEEEEEEEE
Confidence 75 3456677664
No 45
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.63 E-value=1.4e-15 Score=94.93 Aligned_cols=73 Identities=23% Similarity=0.384 Sum_probs=57.9
Q ss_pred EEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEcc-CCcEEEeecCCCCCCeeeEEEEeeccCCcEEeCCCeEE
Q psy9140 25 AVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT-AGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQV 103 (114)
Q Consensus 25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~-~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L 103 (114)
|.|.|.+.+.+.| .++|+|++.... ....+.|+.+.+ ++.|.|.+++.+|+| .|+|.|.|.++. .+..++|
T Consensus 1 a~l~C~~~G~P~P--~v~W~k~~~~~~--~~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~A~N~~G~---~~~~~~l 72 (75)
T cd05763 1 ARLECAATGHPTP--QIAWQKDGGTDF--PAARERRMHVMPEDDVFFIVDVKIEDTG-VYSCTAQNTAGS---ISANATL 72 (75)
T ss_pred CEeEeecccccCC--EEEEEeCCCccC--CcccccceEEecCCCEEEEeeCCcccCE-EEEEEEEcCCCE---EEeeEEE
Confidence 6899999887665 899999986432 223456888765 568999999999995 999999999864 5667888
Q ss_pred EE
Q psy9140 104 MV 105 (114)
Q Consensus 104 ~V 105 (114)
.|
T Consensus 73 ~V 74 (75)
T cd05763 73 TV 74 (75)
T ss_pred EE
Confidence 87
No 46
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.63 E-value=2.1e-15 Score=97.67 Aligned_cols=79 Identities=14% Similarity=0.244 Sum_probs=55.5
Q ss_pred CCeEEEEeecCCCCCCcceEEEeeCCeeeeee-eeccCCcEEE----------ccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140 22 GNIAVLQCNIPAYNHNLLLIAWLREGVSEARS-IIHSGGRYSI----------TTAGALHIRDTGMEDSYIRYYCQTTHK 90 (114)
Q Consensus 22 G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~-~~~~~~r~~v----------~~~G~L~I~~v~~~D~gg~Y~C~a~n~ 90 (114)
|++|.|+|.+.+.+.| .|+|+|++...-.. ......++.+ ...+.|+|.+|+.+|+| .|+|.|.|.
T Consensus 1 G~~v~l~C~v~g~P~P--~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~A~N~ 77 (90)
T cd04974 1 GSDVEFHCKVYSDAQP--HIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAG-EYTCLAGNS 77 (90)
T ss_pred CCcEEEEEEEeCCCCC--eEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCc-EEEEEeecc
Confidence 7899999999887665 89999974211000 0011111111 12357999999999995 999999999
Q ss_pred cCCcEEeCCCeEEEEe
Q psy9140 91 LTGERKISPPSQVMVS 106 (114)
Q Consensus 91 l~~~~~~s~~a~L~V~ 106 (114)
++. .+..|.|.|+
T Consensus 78 ~G~---~~~sa~L~V~ 90 (90)
T cd04974 78 IGP---SHHSAWLTVL 90 (90)
T ss_pred cCc---ccCCEEEEeC
Confidence 986 5778999884
No 47
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.63 E-value=1.5e-15 Score=96.28 Aligned_cols=70 Identities=24% Similarity=0.375 Sum_probs=58.6
Q ss_pred cceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCC
Q psy9140 14 TGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTG 93 (114)
Q Consensus 14 ~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~ 93 (114)
|++..+.+|.++.|.|.+.+. .+ .+.|+||+..+ ..+.||.+. ++.|.|.+++.+|+| .|+|.|.|.++.
T Consensus 1 ~~~~~~~~G~~v~l~C~~~~~-~~--~v~W~k~g~~l-----~~~~~~~~~-~~~L~I~~~~~~DsG-~Y~C~a~n~~g~ 70 (79)
T cd04973 1 VESYSAHPGDLLQLRCRLRDD-VQ--SINWTKDGVQL-----GENNRTRIT-GEEVQIKDAVPRDSG-LYACVTSSPSGS 70 (79)
T ss_pred CCcEEecCCCCEEEEEEecCC-Cc--eEEEeeCCcCC-----CCCceEEEe-CCEEEECCCChhhCE-EEEEEEeCCCCc
Confidence 678889999999999999763 22 79999999754 456788875 578999999999995 999999998754
No 48
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.63 E-value=8.3e-16 Score=94.89 Aligned_cols=61 Identities=28% Similarity=0.583 Sum_probs=52.7
Q ss_pred EEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCC
Q psy9140 25 AVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTG 93 (114)
Q Consensus 25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~ 93 (114)
+.|.|.+.+.+.| .++|+||+..+ ..+.||.+.++|.|.|.+++.+|+| .|+|.|.|.++.
T Consensus 1 v~L~C~~~g~P~p--~i~W~k~g~~~-----~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a~N~~G~ 61 (69)
T cd05746 1 VQIPCSAQGDPEP--TITWNKDGVQV-----TESGKFHISPEGYLAIRDVGVADQG-RYECVARNTIGY 61 (69)
T ss_pred CEeEecceEeCCC--EEEEEECCEEC-----CCCCCEEECCCCEEEECcCChhhCE-EEEEEEECCCCc
Confidence 4699999887555 89999998753 4568999998999999999999995 999999999875
No 49
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.62 E-value=1.2e-15 Score=95.97 Aligned_cols=71 Identities=20% Similarity=0.268 Sum_probs=56.3
Q ss_pred EEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCC----cEEEeecCCCCCCeeeEEEEeeccCCcEEeCCC
Q psy9140 25 AVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAG----ALHIRDTGMEDSYIRYYCQTTHKLTGERKISPP 100 (114)
Q Consensus 25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G----~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~ 100 (114)
+.|+|.+.++++| .|.|+||+..+. ....||.+..++ .|.|.+++.+|+| .|+|.|.|.++. .+..
T Consensus 1 v~L~C~v~G~P~P--~v~W~k~~~~i~----~~~~r~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a~N~~G~---~~~~ 70 (75)
T cd05744 1 VRLECRVSAIPPP--QIFWKKNNEMLT----YNTDRISLYQDNCGRICLLIQNANKEDAG-WYTVSAVNEAGV---VSCN 70 (75)
T ss_pred CEEEEEEeecCCC--eEEEEECCEECC----CCCCcEEEEEcCCCeEEEEECCCCcccCE-EEEEEEEcCCCc---EEEE
Confidence 4799999887666 899999998641 234688886543 5999999999995 999999999875 4667
Q ss_pred eEEEE
Q psy9140 101 SQVMV 105 (114)
Q Consensus 101 a~L~V 105 (114)
++|.|
T Consensus 71 ~~l~v 75 (75)
T cd05744 71 ARLDV 75 (75)
T ss_pred EEEeC
Confidence 77765
No 50
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.62 E-value=2.8e-15 Score=93.08 Aligned_cols=74 Identities=19% Similarity=0.330 Sum_probs=58.0
Q ss_pred CCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCCcEEeCCCe
Q psy9140 22 GNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPS 101 (114)
Q Consensus 22 G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a 101 (114)
|+++.|.|.+.+.+.| .+.|++++..+ +....|+.+.++|.|.|.+++.+|.| .|+|.|.|.++. .+..+
T Consensus 1 G~~~~l~C~~~g~P~p--~v~W~~~~~~~----~~~~~~~~~~~~~~L~i~~~~~~D~G-~Y~C~a~N~~G~---~~~~~ 70 (74)
T cd05764 1 GQRATLRCKARGDPEP--AIHWISPDGKL----ISNSSRTLVYDNGTLDILITTVKDTG-SFTCIASNAAGE---ATATV 70 (74)
T ss_pred CCeEEEEEEccCcCCC--EEEEEeCCCEE----ecCCCeEEEecCCEEEEEECChhhCE-EEEEEEECCCCe---EEEEE
Confidence 7899999999876544 89999854432 24567888889999999999999995 999999999864 34445
Q ss_pred EEEE
Q psy9140 102 QVMV 105 (114)
Q Consensus 102 ~L~V 105 (114)
+|.|
T Consensus 71 ~l~v 74 (74)
T cd05764 71 ELHI 74 (74)
T ss_pred EEEC
Confidence 5543
No 51
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.62 E-value=2.9e-15 Score=93.05 Aligned_cols=75 Identities=19% Similarity=0.291 Sum_probs=57.5
Q ss_pred CCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCCcEEeCCCe
Q psy9140 22 GNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPS 101 (114)
Q Consensus 22 G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a 101 (114)
|+.+.|.|.+.+.+.| .++|++++..+.. ....+.....++.|.|.+++.+|+| .|+|.|.|.++. .++.+
T Consensus 1 G~~~~l~C~~~g~P~p--~i~W~~~g~~~~~---~~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~A~N~~G~---~~~~~ 71 (76)
T cd04978 1 GETGRLDCEAEGIPQP--TITWRLNGVPIEE---LPPDPRRRVDGGTLILSNVQPNDTA-VYQCNASNVHGY---LLANA 71 (76)
T ss_pred CCeEEEEEEceeeCCC--EEEEEECCEECCC---CCCcceEEccCCEEEECCCChhhCE-EEEEEEEccCCe---EEEeE
Confidence 7899999999886555 8999999986421 1111234456799999999999995 999999999764 45567
Q ss_pred EEEE
Q psy9140 102 QVMV 105 (114)
Q Consensus 102 ~L~V 105 (114)
.|.|
T Consensus 72 ~l~V 75 (76)
T cd04978 72 FVHV 75 (76)
T ss_pred EEEE
Confidence 7776
No 52
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.61 E-value=4e-15 Score=92.90 Aligned_cols=74 Identities=22% Similarity=0.404 Sum_probs=60.1
Q ss_pred EEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCC-cEEEeecCCCCCCeeeEEEEeeccCCcEEeCCCeEE
Q psy9140 25 AVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAG-ALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQV 103 (114)
Q Consensus 25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G-~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L 103 (114)
|.|.|.+.+.+++ .+.|+|++..+. .....||.+.++| .|.|.+++.+|.| .|+|.|.|.++. ....++|
T Consensus 1 ~~L~C~v~g~P~p--~v~W~k~~~~l~---~~~~~~~~~~~~~~~l~I~~~~~~D~G-~Y~C~a~N~~G~---~~~~~~l 71 (76)
T cd05736 1 ASLRCHAEGIPLP--RLTWLKNGMDIT---PKLSKQLTLIANGSELHISNVRYEDTG-AYTCIAKNEAGV---DEDISSL 71 (76)
T ss_pred CEeEeEeeecCCC--EEEEEECCEECC---CCCCccEEEeCCCCEEEECcCCcccCE-EEEEEEEcCCCC---cceEEEE
Confidence 6799999886554 899999998652 2234688888777 5999999999995 999999999875 4668899
Q ss_pred EEec
Q psy9140 104 MVSE 107 (114)
Q Consensus 104 ~V~~ 107 (114)
.|++
T Consensus 72 ~V~~ 75 (76)
T cd05736 72 FVED 75 (76)
T ss_pred EEEc
Confidence 9875
No 53
>KOG4222|consensus
Probab=99.60 E-value=1.6e-15 Score=132.54 Aligned_cols=106 Identities=20% Similarity=0.329 Sum_probs=88.7
Q ss_pred CeeeccccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCC
Q psy9140 1 MNMGDMSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSY 80 (114)
Q Consensus 1 ~~~avv~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~g 80 (114)
+..||++.+|.+.|.|..+..|+.|+|+|.-|.--+.+ .++|.|||..++ .....++.+...|.|.|+||+..|+|
T Consensus 125 L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpep-tvSw~Kdg~pl~---~~~~~~~~lisgG~LlIsnvrksD~G 200 (1281)
T KOG4222|consen 125 LIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEP-TVSWVKDGKPLD---HYDVPIIALISGGNLLISNVRKSDEG 200 (1281)
T ss_pred EEEEEechhcccCcccccccccceeEEeccCCCCCCCC-cceeecCCCccc---cccceeEEEecCCcEEEeccccCCCc
Confidence 35799999999999999999999999999965422222 899999999763 23456777777999999999999996
Q ss_pred eeeEEEEeeccCCcEEeCCCeEEEEeccccccc
Q psy9140 81 IRYYCQTTHKLTGERKISPPSQVMVSEIALPLK 113 (114)
Q Consensus 81 g~Y~C~a~n~l~~~~~~s~~a~L~V~~~~~~~~ 113 (114)
+|.|++.|..+- +.|+.|+|.|.++.+..+
T Consensus 201 -tY~CVatNmvG~--ReS~~A~lsv~e~P~f~~ 230 (1281)
T KOG4222|consen 201 -TYACVATNMVGE--RESIPARLSVQEKPWFWK 230 (1281)
T ss_pred -eeeeeecccccc--cccccceeeeccCCcccc
Confidence 999999998653 789999999999887654
No 54
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.60 E-value=4.3e-15 Score=93.70 Aligned_cols=64 Identities=25% Similarity=0.367 Sum_probs=53.0
Q ss_pred CCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccC---CcEEEeecCCCCCCeeeEEEEeeccCC
Q psy9140 22 GNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTA---GALHIRDTGMEDSYIRYYCQTTHKLTG 93 (114)
Q Consensus 22 G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~---G~L~I~~v~~~D~gg~Y~C~a~n~l~~ 93 (114)
|++|.|.|.+.+.+.| .++|+|++..+ ..+.||.+... +.|.|.+++.+|+| .|+|.|.|.++.
T Consensus 1 G~~v~l~C~~~g~P~p--~v~W~~~~~~~-----~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~N~~G~ 67 (78)
T cd05743 1 GETVEFTCVATGVPTP--IINWRLNWGHV-----PDSARVSITSEGGYGTLTIRDVKESDQG-AYTCEAINTRGM 67 (78)
T ss_pred CCEEEEEEEEEEecCC--EEEEEECCeEC-----CCCCCEEEEECCCEEEEEECCCChHHCE-EEEEEEEecCCE
Confidence 7899999999887655 89999998743 34578877543 57999999999995 999999999864
No 55
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.60 E-value=3.8e-15 Score=93.88 Aligned_cols=76 Identities=22% Similarity=0.372 Sum_probs=57.2
Q ss_pred EEEEeecCCCCCCcceEEEeeCCeeeee---eeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCCcEEeCCCe
Q psy9140 25 AVLQCNIPAYNHNLLLIAWLREGVSEAR---SIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPS 101 (114)
Q Consensus 25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~---~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a 101 (114)
|+|.|.+.+++.| .+.|+|++....+ .....++|+.+.++|+|.|.+++.+|+| .|+|.|.|.++.. .+..+
T Consensus 1 v~l~C~~~G~P~P--~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G-~Y~C~a~N~~G~~--~s~~~ 75 (79)
T cd05734 1 VTLNCSAEGYPPP--TIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSG-YYLCKVSNDVGAD--ASKSM 75 (79)
T ss_pred CEeEeeCeEeCCC--EEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCE-EEEEEEEeCCCCC--CceEE
Confidence 5799999887666 8999997543210 0112568999988999999999999995 9999999998753 34455
Q ss_pred EEEE
Q psy9140 102 QVMV 105 (114)
Q Consensus 102 ~L~V 105 (114)
.|.|
T Consensus 76 ~l~~ 79 (79)
T cd05734 76 VLTV 79 (79)
T ss_pred EEeC
Confidence 5543
No 56
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.59 E-value=5.6e-15 Score=96.46 Aligned_cols=69 Identities=23% Similarity=0.369 Sum_probs=57.0
Q ss_pred ccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140 13 NTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK 90 (114)
Q Consensus 13 ~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~ 90 (114)
+|++..+.+|++|.|.|.+.+ +.+ .++|.||+..+. ..+.||.+. +|.|.|+||+.+|+| .|+|.|.+.
T Consensus 2 ~P~~~~v~~G~~v~L~C~~~~-~~~--~i~W~~ng~~i~----~~~~r~~~~-~~~L~I~nv~~~DsG-~Y~C~a~e~ 70 (87)
T cd05873 2 DPRQRTFKLGNNAELKCSPKS-NLA--RVVWKFDGKVLT----PESAKYLLY-RDGLLIFNASEADAG-RYQCLSVEK 70 (87)
T ss_pred CcceEEEECCCCEEEEEECCC-CCC--eEEEEECCEECC----CCCceEEEE-CCcEEEeCCCHHHCE-EEEEEEEec
Confidence 689999999999999999753 222 899999999652 223688765 789999999999995 999999985
No 57
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.59 E-value=4.1e-15 Score=95.54 Aligned_cols=80 Identities=13% Similarity=0.225 Sum_probs=61.5
Q ss_pred eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEee
Q psy9140 10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTH 89 (114)
Q Consensus 10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n 89 (114)
|...|+|..|.+|++|.|.|.+.|.+.|. .|.|.||+..+ .. ++... .+.|.|.++. |+ |.|.|.|.|
T Consensus 1 f~~~P~~~~v~~G~~v~l~C~a~G~P~P~-~I~W~k~g~~l-----~~--~~~~~-~s~L~i~~~~--d~-g~Y~C~A~N 68 (81)
T cd05749 1 FTVEPEDLSVTANTPFNLTCQAVGPPEPV-EILWWQGGSPL-----GD--PPAPS-PSVLNVPGLN--ET-SKFSCEAHN 68 (81)
T ss_pred CcCCCCceEEcCCCCEEEEEEeeeecCCe-EEEEEECCEEC-----CC--CCCCC-CCEEEEcccc--CC-eEEEEEEEe
Confidence 67889999999999999999998865441 59999999854 11 33333 5789999984 77 499999999
Q ss_pred ccCCcEEeCCCeEE
Q psy9140 90 KLTGERKISPPSQV 103 (114)
Q Consensus 90 ~l~~~~~~s~~a~L 103 (114)
.++.. .|..|+|
T Consensus 69 ~~G~~--~s~~a~~ 80 (81)
T cd05749 69 AKGVT--TSRTGTV 80 (81)
T ss_pred ccCcE--EeeeEEe
Confidence 99753 4445655
No 58
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.58 E-value=9.8e-15 Score=95.97 Aligned_cols=87 Identities=17% Similarity=0.247 Sum_probs=64.2
Q ss_pred eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeee---eeccCCcEEEc----cCCcEEEeecCCCCCCeeeE
Q psy9140 12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARS---IIHSGGRYSIT----TAGALHIRDTGMEDSYIRYY 84 (114)
Q Consensus 12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~---~~~~~~r~~v~----~~G~L~I~~v~~~D~gg~Y~ 84 (114)
+.+++..+.+|++|.|+|.+.+.+.+ .+.|++.+..+++. ....++||.+. .++.|.|++|+.+|+| .|+
T Consensus 2 ~~~~~v~v~eG~~v~L~C~~~~~p~~--~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG-~Y~ 78 (95)
T cd07701 2 PLTQNVTVVEGGTANLTCRVDQNDNT--SLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEG-QYT 78 (95)
T ss_pred cccceEEEecCCcEEEEEEEecCCce--EEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCE-EEE
Confidence 46789999999999999999765444 78998754433321 12357899873 2358999999999995 999
Q ss_pred EEEeeccCCcEEeCCCeEEEE
Q psy9140 85 CQTTHKLTGERKISPPSQVMV 105 (114)
Q Consensus 85 C~a~n~l~~~~~~s~~a~L~V 105 (114)
|.+.+. .. .+..|.|+|
T Consensus 79 C~~~t~-~~---~~~~~~l~v 95 (95)
T cd07701 79 CSLFTM-PV---KTSKAYLTV 95 (95)
T ss_pred EEeEee-cC---ccEEEEEEC
Confidence 999984 33 255777765
No 59
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.58 E-value=4.3e-15 Score=92.26 Aligned_cols=71 Identities=15% Similarity=0.205 Sum_probs=54.3
Q ss_pred EEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCCcEEeCCCeEEE
Q psy9140 25 AVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVM 104 (114)
Q Consensus 25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~ 104 (114)
++|.|.+.++++| .+.|+|++..+ ..+.+.....++.|.|++++.+|+| .|+|.|.|.++. .+..+.|.
T Consensus 1 ~~L~C~~~G~P~P--~v~W~k~~~~~-----~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~N~~G~---~~~~~~l~ 69 (71)
T cd05876 1 LVLECIAEGLPTP--EVHWDRIDGPL-----SPNRTKKLNNNKTLQLDNVLESDDG-EYVCTAENSEGS---ARHHYTVT 69 (71)
T ss_pred CEEEEEeeEecCC--eEEEEECCcCC-----CCCceeEEcCCCEEEEcccCHHhCE-EEEEEEEcCCCe---EEEEEEEE
Confidence 4799999887666 89999998853 2222333456789999999999995 999999999875 34566776
Q ss_pred Ee
Q psy9140 105 VS 106 (114)
Q Consensus 105 V~ 106 (114)
|+
T Consensus 70 Ve 71 (71)
T cd05876 70 VE 71 (71)
T ss_pred EC
Confidence 63
No 60
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.58 E-value=7.8e-15 Score=96.44 Aligned_cols=83 Identities=17% Similarity=0.264 Sum_probs=62.5
Q ss_pred ceeEEEeCCeEEEEeecCCC-----CCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEee
Q psy9140 15 GNTFVLRGNIAVLQCNIPAY-----NHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTH 89 (114)
Q Consensus 15 ~d~~v~~G~~AvL~C~~~~~-----~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n 89 (114)
.+..+.+|+++.|+|.+.+. +.+ .+.|+|++..+..+ ...+.|+... +|.|.|.+++.+|+| .|+|.+.|
T Consensus 7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~--~v~Wyk~~~~~~~~-~~~~~r~~~~-~~~L~I~~~~~~DsG-~Y~C~~~N 81 (94)
T cd05756 7 KKSYVLEGEPVVIKCPLFYSYIAQSPGL--NLTWYKSDGKTPIP-TEERSRMHQQ-KDLLWFLPAALEDSG-LYTCVVRN 81 (94)
T ss_pred eEEEEecCCCeEEECCCCCcccccCCCc--eEEEEEcCCCCccc-ccccceeeec-CCeEEEccCCcccCe-EEEEEEcC
Confidence 57789999999999998763 322 89999998753211 1234676554 689999999999995 99999999
Q ss_pred ccCCcEEeCCCeEEEE
Q psy9140 90 KLTGERKISPPSQVMV 105 (114)
Q Consensus 90 ~l~~~~~~s~~a~L~V 105 (114)
..+. .+..++|.|
T Consensus 82 ~~g~---~~~~~~L~v 94 (94)
T cd05756 82 STYC---MKVSISLTV 94 (94)
T ss_pred CCcc---EEEEEEEEC
Confidence 8754 454666654
No 61
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.58 E-value=9.7e-15 Score=91.50 Aligned_cols=78 Identities=19% Similarity=0.275 Sum_probs=56.5
Q ss_pred CCeEEEEeecCCCCCCcceEEEeeCCe---eeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCCcEEeC
Q psy9140 22 GNIAVLQCNIPAYNHNLLLIAWLREGV---SEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKIS 98 (114)
Q Consensus 22 G~~AvL~C~~~~~~~~~~~vsW~kd~~---~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s 98 (114)
|++|.|.|.+.+.+.| .+.|+|++. .++........++.+...+.|.|.+++.+|+| .|+|.|.|..+. .+
T Consensus 1 G~~v~l~C~~~g~P~p--~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a~N~~G~---~~ 74 (81)
T cd05765 1 GETASFHCDVTGRPPP--EITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAG-LYTCTARNSGGL---LR 74 (81)
T ss_pred CCcEEEEeeccccCCC--cEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCE-EEEEEEecCCce---EE
Confidence 7899999999876555 799999742 11111111234677777889999999999995 999999999864 34
Q ss_pred CCeEEEE
Q psy9140 99 PPSQVMV 105 (114)
Q Consensus 99 ~~a~L~V 105 (114)
..+.|.|
T Consensus 75 ~~~~l~v 81 (81)
T cd05765 75 ANFPLSV 81 (81)
T ss_pred EEEEEeC
Confidence 4555654
No 62
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.57 E-value=1.4e-14 Score=91.84 Aligned_cols=81 Identities=19% Similarity=0.294 Sum_probs=58.7
Q ss_pred eEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEE-ccCCcEEEeecCCCCCCeeeEEEEeeccCCcE
Q psy9140 17 TFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSI-TTAGALHIRDTGMEDSYIRYYCQTTHKLTGER 95 (114)
Q Consensus 17 ~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v-~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~ 95 (114)
..|.+|.++.|.|.+.+++.+ .++|+|++..+.. .....++.+ ...+.|.|.+++.+|+| .|+|.|.|.++.
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p--~i~W~k~g~~l~~--~~~~~~~~~~~~~~~l~i~~~~~~D~G-~Y~C~a~N~~G~-- 76 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTP--TMRWLKNGKEFKQ--EHRIGGYKVRNQHWSLIMESVVPSDKG-NYTCVVENEYGS-- 76 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCC--EEEEEECCEECCC--CCceeeeEEeCCceEEEEccCCcccCE-EEEEEEEeCCCE--
Confidence 457789999999999887544 8999999986421 011122333 23568999999999995 999999999874
Q ss_pred EeCCCeEEEE
Q psy9140 96 KISPPSQVMV 105 (114)
Q Consensus 96 ~~s~~a~L~V 105 (114)
.+..++|.|
T Consensus 77 -~~~~~~l~v 85 (85)
T cd05857 77 -INHTYHLDV 85 (85)
T ss_pred -EEEEEEEEC
Confidence 344556654
No 63
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.57 E-value=2.1e-14 Score=90.48 Aligned_cols=74 Identities=24% Similarity=0.475 Sum_probs=54.3
Q ss_pred EEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEcc-CCcEEEeecCCCCCCeeeEEEEeeccCCcEEeCCCeEE
Q psy9140 25 AVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT-AGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQV 103 (114)
Q Consensus 25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~-~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L 103 (114)
|.|.|.+.+.+.| .++|+|++..+ .....+|.+.. .+.|.|.+++.+|+| .|.|.|.|.++. ...+....|
T Consensus 1 v~L~C~~~g~P~p--~v~W~k~g~~l----~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a~N~~G~-~~s~~~~~l 72 (77)
T cd05760 1 VTLRCHIDGHPRP--TYQWFRDGTPL----SDGQGNYSVSSKERTLTLRSAGPDDSG-LYYCCAHNAFGS-VCSSQNFTL 72 (77)
T ss_pred CEEEEEeeecCCC--cEEEEECCEEC----CCCCccEEEeCCCCEEEEeeCCcccCE-EEEEEEEeCCCe-EeeCceEEE
Confidence 5799999887655 89999999864 12335776654 468999999999995 999999999864 222334555
Q ss_pred EEe
Q psy9140 104 MVS 106 (114)
Q Consensus 104 ~V~ 106 (114)
.|-
T Consensus 73 ~v~ 75 (77)
T cd05760 73 SII 75 (77)
T ss_pred EEe
Confidence 543
No 64
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.57 E-value=1.7e-14 Score=93.97 Aligned_cols=73 Identities=21% Similarity=0.380 Sum_probs=58.7
Q ss_pred ccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEc-cCC---cEEEeecCCCCCCeeeEEEEe
Q psy9140 13 NTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSIT-TAG---ALHIRDTGMEDSYIRYYCQTT 88 (114)
Q Consensus 13 ~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~-~~G---~L~I~~v~~~D~gg~Y~C~a~ 88 (114)
.|....+.+|++|.|.|.+.+++.+ .+.|+|++..+ ..+.||.+. .++ .|.|.+++.+|+| .|+|.|.
T Consensus 7 ~p~~v~v~eG~~v~L~C~v~g~P~p--~i~W~k~~~~~-----~~~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a~ 78 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTVFGNPDP--EVIWFKNDQDI-----ELSEHYSVKLEQGKYASLTIKGVTSEDSG-KYSINVK 78 (92)
T ss_pred CCCcEEEcCCCEEEEEEEEEEeCCC--eEEEEECCEEC-----CCCCCEEEEEcCCCEEEEEECCCChhhCE-EEEEEEE
Confidence 4667889999999999998776544 79999998853 345667653 233 7999999999995 9999999
Q ss_pred eccCC
Q psy9140 89 HKLTG 93 (114)
Q Consensus 89 n~l~~ 93 (114)
|.++.
T Consensus 79 N~~G~ 83 (92)
T cd05891 79 NKYGG 83 (92)
T ss_pred eCCCc
Confidence 99874
No 65
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.55 E-value=3.3e-14 Score=91.88 Aligned_cols=79 Identities=22% Similarity=0.355 Sum_probs=60.8
Q ss_pred cceeeccceeEEEe---CCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCC-CCCCeee
Q psy9140 8 SDYEINTGNTFVLR---GNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGM-EDSYIRY 83 (114)
Q Consensus 8 ~~~~v~~~d~~v~~---G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~-~D~gg~Y 83 (114)
|.|.-+|.+..+-+ |++|.|.|.+.+.+.+ .++|+|++..+ ....+.+|.+. +|.|.|.++.. +|+| .|
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p--~i~W~k~~~~l---~~~~~~~~~~~-~~~L~i~~~~~~~d~G-~Y 74 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPP--TYRWLMNGTEI---DDEPDSRYSLV-GGNLVISNPSKAKDAG-RY 74 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCC--EEEEEECCEEC---CCCCCCCEEEE-CCEEEEecCCccCCCE-EE
Confidence 45778888876544 4679999999665433 89999999864 12235677664 79999999875 8995 99
Q ss_pred EEEEeeccCC
Q psy9140 84 YCQTTHKLTG 93 (114)
Q Consensus 84 ~C~a~n~l~~ 93 (114)
+|.|.|.++.
T Consensus 75 ~C~a~N~~G~ 84 (91)
T cd04967 75 QCLASNIVGT 84 (91)
T ss_pred EEEEEcCCCE
Confidence 9999999875
No 66
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.54 E-value=2.9e-14 Score=92.06 Aligned_cols=73 Identities=18% Similarity=0.317 Sum_probs=53.7
Q ss_pred CCeEEEEeecCCCCCCcceEEEeeCC----eeeeeeeeccCC--cEEEcc----------CCcEEEeecCCCCCCeeeEE
Q psy9140 22 GNIAVLQCNIPAYNHNLLLIAWLREG----VSEARSIIHSGG--RYSITT----------AGALHIRDTGMEDSYIRYYC 85 (114)
Q Consensus 22 G~~AvL~C~~~~~~~~~~~vsW~kd~----~~~~~~~~~~~~--r~~v~~----------~G~L~I~~v~~~D~gg~Y~C 85 (114)
|++|.|.|.+.+.+.| .++|+|++ ..+ ..++ +..+.. .+.|.|++|+.+|+| .|+|
T Consensus 1 G~~v~L~C~~~g~P~P--~i~W~k~~~~~g~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C 72 (90)
T cd05858 1 GSTVEFVCKVYSDAQP--HIQWLKHVEKNGSKY-----GPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAG-EYTC 72 (90)
T ss_pred CCeEEEEEEEecCCCC--EEEEEEecccCCcEe-----CCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCE-EEEE
Confidence 7899999999887655 89999953 221 1111 122221 147999999999995 9999
Q ss_pred EEeeccCCcEEeCCCeEEEE
Q psy9140 86 QTTHKLTGERKISPPSQVMV 105 (114)
Q Consensus 86 ~a~n~l~~~~~~s~~a~L~V 105 (114)
.|.|.++. .+..|.|.|
T Consensus 73 ~A~N~~G~---~~~~a~L~V 89 (90)
T cd05858 73 LAGNSIGI---SHHSAWLTV 89 (90)
T ss_pred EEEeCCCc---ccceEEEEE
Confidence 99999975 466888887
No 67
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.54 E-value=8.9e-14 Score=93.38 Aligned_cols=92 Identities=20% Similarity=0.216 Sum_probs=67.5
Q ss_pred cceeeccceeEEE----eCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEc--c-----CCcEEEeecC-
Q psy9140 8 SDYEINTGNTFVL----RGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSIT--T-----AGALHIRDTG- 75 (114)
Q Consensus 8 ~~~~v~~~d~~v~----~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~--~-----~G~L~I~~v~- 75 (114)
|.|.+.|+...+. .|.+|.|.|.+.+.+.+ .+.|+||+..+. ..+.||.+. . .+.|.|.++.
T Consensus 5 P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p--~i~W~k~g~~l~----~~~~r~~~~~~~~~~~~~s~L~I~~v~~ 78 (109)
T cd05773 5 PDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRV--QFRWAKNGVPLD----LGNPRYEETTEHTGTVHTSILTIINVSA 78 (109)
T ss_pred cccccCCceEEEEEecCCCCEEEEEEECcccCCC--EEEEEECCEECC----CCCCeEEEEeeccCccceeEEEECcCCc
Confidence 4566666655443 45899999999876443 899999998641 234577642 1 3579999998
Q ss_pred CCCCCeeeEEEEeeccCCcEEeCCCeEEEEeccc
Q psy9140 76 MEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIA 109 (114)
Q Consensus 76 ~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~ 109 (114)
.+|.| .|+|.|.|.++. .+....|.|.+++
T Consensus 79 ~~D~G-~Y~C~A~N~~G~---~~~~i~L~~~~~p 108 (109)
T cd05773 79 ALDYA-LFTCTAHNSLGE---DSLDIQLVSTSRP 108 (109)
T ss_pred cCCCE-EEEEEEEeCCcc---CcEEEEEEecCCC
Confidence 58995 999999999975 4667788887764
No 68
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.54 E-value=3e-14 Score=94.85 Aligned_cols=80 Identities=16% Similarity=0.133 Sum_probs=62.2
Q ss_pred eeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEcc---------CCcEEEeecCCCCCCeeeEEE
Q psy9140 16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT---------AGALHIRDTGMEDSYIRYYCQ 86 (114)
Q Consensus 16 d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~---------~G~L~I~~v~~~D~gg~Y~C~ 86 (114)
...+..|..+.|.|.+.++++| .+.|+||+..| ..+.+..+.. .+.|.|.+++.+|+| .|+|.
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P--~v~W~kdg~~l-----~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G-~Ytc~ 83 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPP--QIRWLKDNRTL-----IENLTEITTSEHNVQETRYVSKLKLIRAKEEDSG-LYTAL 83 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCC--ceEEEECCEEC-----cCCcceEEeccccccceeeccEEEEeeCCHHHCE-EEEEE
Confidence 6688999999999999998766 89999999864 2233322211 357999999999995 99999
Q ss_pred EeeccCCcEEeCCCeEEEEe
Q psy9140 87 TTHKLTGERKISPPSQVMVS 106 (114)
Q Consensus 87 a~n~l~~~~~~s~~a~L~V~ 106 (114)
|.|..+. .+..+.|.|+
T Consensus 84 A~N~~g~---~~~t~~l~V~ 100 (101)
T cd05859 84 AQNEDAV---KSYTFALQIQ 100 (101)
T ss_pred EEcCCce---EEEEEEEEEE
Confidence 9999754 4557777774
No 69
>KOG4194|consensus
Probab=99.52 E-value=2.7e-14 Score=119.69 Aligned_cols=98 Identities=18% Similarity=0.292 Sum_probs=84.1
Q ss_pred cccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCC-cEEEeecCCCCCCeeeE
Q psy9140 6 MSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAG-ALHIRDTGMEDSYIRYY 84 (114)
Q Consensus 6 v~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G-~L~I~~v~~~D~gg~Y~ 84 (114)
..|.|.-.|+|.....|++|.|.|.+.|++.| .|+|+|||+... +.....|.+|+|+. ...|.||..||+| .|+
T Consensus 611 ~~PsFtktP~dltl~tg~mArl~CaAtG~P~P--eIawqkdggtdF--PAA~eRRl~Vmpedd~f~Itnvk~eD~G-iYt 685 (873)
T KOG4194|consen 611 QAPSFTKTPEDLTLRTGQMARLECAATGHPRP--EIAWQKDGGTDF--PAARERRLHVMPEDDVFFITNVKIEDQG-IYT 685 (873)
T ss_pred ccCccccCcccceeecccceeeeeeccCCCCc--ceeehhcCCCCC--chhhhheeeecCCCCEEEEecccccccc-eeE
Confidence 34789999999999999999999999998777 899999998632 23557899999854 7999999999995 999
Q ss_pred EEEeeccCCcEEeCCCeEEEEeccccc
Q psy9140 85 CQTTHKLTGERKISPPSQVMVSEIALP 111 (114)
Q Consensus 85 C~a~n~l~~~~~~s~~a~L~V~~~~~~ 111 (114)
|.|.|..++ .+..|+|+|.|-+..
T Consensus 686 C~A~n~AG~---isanAtL~V~e~p~f 709 (873)
T KOG4194|consen 686 CTAQNVAGQ---ISANATLTVLETPSF 709 (873)
T ss_pred Eeeeccccc---eeeceEEEEecCCcc
Confidence 999999765 788999999986543
No 70
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.52 E-value=1.1e-13 Score=89.03 Aligned_cols=87 Identities=24% Similarity=0.315 Sum_probs=63.2
Q ss_pred ccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccC
Q psy9140 13 NTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLT 92 (114)
Q Consensus 13 ~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~ 92 (114)
.|+...+.+|++|.|+|.+.+ +.+ .+.|+|++..+... .....|+.+.+ +.|.|.+++.+|+| .|+|.|.|...
T Consensus 2 ~~~~~~v~~g~~v~L~C~~~~-p~~--~i~W~k~~~~~~~~-~~~~~~~~~~~-~~L~I~~~~~~D~G-~Y~C~a~~~~~ 75 (89)
T cd04979 2 EEKVVTVVEGNSVFLECSPKS-NLA--SVVWLFQGGPLQRK-EEPEERLLVTE-DGLLIRSVSPADAG-VYTCQSVEHGF 75 (89)
T ss_pred cceEEEEECCCcEEEEEeCCC-CCc--eEEEEECCcccccc-cCcCceEEEcC-CCEEEccCCHHHCE-EEEEEEecCcc
Confidence 467788999999999999864 222 79999998754210 01135777764 66999999999995 99999998643
Q ss_pred CcEEeCCCeEEEEec
Q psy9140 93 GERKISPPSQVMVSE 107 (114)
Q Consensus 93 ~~~~~s~~a~L~V~~ 107 (114)
+ ..+....|.|.+
T Consensus 76 ~--~~~~~~~l~V~~ 88 (89)
T cd04979 76 K--QTLATYSLNVLE 88 (89)
T ss_pred c--eeEeEEEEEEec
Confidence 3 355566666643
No 71
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.51 E-value=1e-13 Score=87.32 Aligned_cols=71 Identities=20% Similarity=0.344 Sum_probs=53.5
Q ss_pred EEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEc-cCCcEEEeecCC----CCCCeeeEEEEeeccCCcEEeCC
Q psy9140 25 AVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSIT-TAGALHIRDTGM----EDSYIRYYCQTTHKLTGERKISP 99 (114)
Q Consensus 25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~-~~G~L~I~~v~~----~D~gg~Y~C~a~n~l~~~~~~s~ 99 (114)
+.|.|.+.+.+.| .++|+||+..+ ....+.|+.+. .+|.|.|.+++. +|+ |.|+|.|.|.++.. .|.
T Consensus 1 i~l~C~~~G~P~P--~v~W~k~g~~l---~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~-G~Y~C~A~N~~G~~--~s~ 72 (77)
T cd05733 1 IVIKCEAKGNPPP--TFSWTRNGTHF---DPEKDPRVTMKPDSGTLVIDNMNGGRAEDYE-GEYQCYASNELGTA--ISN 72 (77)
T ss_pred CEEEeeCcccCCC--eEEEEECCeEC---CCCCCCCEEEeCCCCEEEEeccCCCCCcCCC-EEEEEEEEcCCCcE--Ecc
Confidence 4799999887555 89999999864 22345677664 589999999864 788 59999999998753 455
Q ss_pred CeEE
Q psy9140 100 PSQV 103 (114)
Q Consensus 100 ~a~L 103 (114)
.++|
T Consensus 73 ~~~l 76 (77)
T cd05733 73 EIHL 76 (77)
T ss_pred ccEE
Confidence 5554
No 72
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.51 E-value=1.2e-13 Score=88.07 Aligned_cols=76 Identities=26% Similarity=0.379 Sum_probs=61.2
Q ss_pred eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEee
Q psy9140 10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTH 89 (114)
Q Consensus 10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n 89 (114)
.++.|+...+.+|++++|.|.+.+.+.+. .+.|+||+..+ . ..++.|.|.++ .+|+| .|+|.|.|
T Consensus 3 v~~~P~~~~v~~G~~V~L~C~~~~~p~~~-~~~W~kng~~l-----~-------~~~~~l~i~~~-~~dsG-~Y~C~a~~ 67 (78)
T cd05752 3 VSLDPPWTTIFQGEKVTLTCNGFNSPEQN-STQWYHNGKLL-----E-------TTTNSYRIRAA-NNDSG-EYRCQTQG 67 (78)
T ss_pred EEeCCCCeEeeCCCCEEEEEeCCCCCCCc-cEEEEECCEEe-----e-------ccCCeEEEeec-ccCCE-EeEEECCC
Confidence 46789999999999999999997754322 68999998753 1 13578999999 99995 99999998
Q ss_pred ccCCcEEeCCCeEEEE
Q psy9140 90 KLTGERKISPPSQVMV 105 (114)
Q Consensus 90 ~l~~~~~~s~~a~L~V 105 (114)
. ..|.+.+|.|
T Consensus 68 ~-----~~S~~v~l~V 78 (78)
T cd05752 68 S-----SLSDPVHLEV 78 (78)
T ss_pred C-----cCCCCEEEeC
Confidence 5 3677888875
No 73
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.51 E-value=7.2e-14 Score=86.77 Aligned_cols=71 Identities=23% Similarity=0.291 Sum_probs=55.2
Q ss_pred eEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEcc---CCcEEEeecCCCCCCeeeEEEEeeccCCcEEeCCC
Q psy9140 24 IAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT---AGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPP 100 (114)
Q Consensus 24 ~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~---~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~ 100 (114)
++.|.|.+.+.+.| .+.|+||+..+ ..+.|+.+.. .+.|.|.+++.+|+| .|+|.|.|.++. .+..
T Consensus 1 ~~~l~c~~~G~P~p--~v~W~k~g~~l-----~~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a~N~~G~---~~~~ 69 (74)
T cd05748 1 SVRLEVPISGRPTP--TVTWSKDGKPL-----KLSGRVQIETTASSTSLVIKNAERSDSG-KYTLTLKNPAGE---KSAT 69 (74)
T ss_pred CEEEEeeEeeeCCC--eEEEEECCEEc-----CCCCeEEEEECCCeEEEEECCCCcCcCE-EEEEEEECCCcc---EEEE
Confidence 46799999887665 89999999853 4567887754 347999999999995 999999999865 3445
Q ss_pred eEEEE
Q psy9140 101 SQVMV 105 (114)
Q Consensus 101 a~L~V 105 (114)
++|.|
T Consensus 70 ~~l~V 74 (74)
T cd05748 70 INVKV 74 (74)
T ss_pred EEEEC
Confidence 55543
No 74
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.50 E-value=9.3e-14 Score=86.31 Aligned_cols=61 Identities=16% Similarity=0.321 Sum_probs=48.4
Q ss_pred CCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCC
Q psy9140 22 GNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTG 93 (114)
Q Consensus 22 G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~ 93 (114)
|.+|.|.|.+.+.+.| .++|+|++..+ ..+.++.+ ..+.|+|.+++ |+ |.|+|.|.|.++.
T Consensus 1 G~~v~L~C~a~G~P~P--~v~W~k~g~~l-----~~~~~~~~-~~~~L~i~~~~--d~-G~Y~C~A~N~~G~ 61 (69)
T cd05739 1 GGSVNLTCVAVGAPMP--YVKWMKGGEEL-----TKEDEMPV-GRNVLELTNIY--ES-ANYTCVAISSLGM 61 (69)
T ss_pred CCeEEEEEEeeecCCC--EEEEEECCEEC-----CCccceec-CccEEEEeccc--cC-eeEEEEEEeCCCE
Confidence 7899999999887665 89999999853 33455544 35689999985 77 4999999999864
No 75
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.50 E-value=1e-13 Score=87.73 Aligned_cols=71 Identities=20% Similarity=0.314 Sum_probs=53.2
Q ss_pred EEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEE-ccCCcEEEeecCC----CCCCeeeEEEEeeccCCcEEeCC
Q psy9140 25 AVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSI-TTAGALHIRDTGM----EDSYIRYYCQTTHKLTGERKISP 99 (114)
Q Consensus 25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v-~~~G~L~I~~v~~----~D~gg~Y~C~a~n~l~~~~~~s~ 99 (114)
++|.|.+.+++.| .++|+||+..+ ....+.|+.+ ..+|.|.|.+++. +|+ |.|+|.|.|.++.. .|.
T Consensus 1 ~~l~C~~~G~P~P--~v~W~k~g~~~---~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~-G~Y~C~A~N~~G~~--~s~ 72 (77)
T cd05875 1 IIIECEAKGNPVP--TFQWTRNGKFF---NVAKDPRVSMRRRSGTLVIDFSGGGRPEDYE-GEYQCFARNNLGTA--LSN 72 (77)
T ss_pred CEEEEeccccCCC--EEEEEECCEEc---cCcCCCcEEEeCCCceEEEeccCCCCCCCCC-EEEEEEEEeccceE--EEE
Confidence 4799999987665 89999999854 2345778877 4689999999753 457 59999999998743 344
Q ss_pred CeEE
Q psy9140 100 PSQV 103 (114)
Q Consensus 100 ~a~L 103 (114)
.++|
T Consensus 73 ~~~~ 76 (77)
T cd05875 73 KILL 76 (77)
T ss_pred EEEE
Confidence 4443
No 76
>KOG4221|consensus
Probab=99.50 E-value=8.9e-14 Score=122.41 Aligned_cols=89 Identities=24% Similarity=0.420 Sum_probs=78.0
Q ss_pred cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140 8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT 87 (114)
Q Consensus 8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a 87 (114)
.+|..+++++.+..|++|.|+|.+-+ .+.+.+.|+||+.++ ..++|+.++++|.|+|++++..|.| .|+|.+
T Consensus 141 ~~f~~~~~~~t~~~g~ta~f~c~vn~--e~~p~i~w~kn~~pl-----~~~~r~i~lpsG~L~I~~~qp~d~g-~yrc~v 212 (1381)
T KOG4221|consen 141 ADFALQPESTTLLYGQTALFSCEVNA--EPVPTIMWLKNDQPL-----PLDSRVIVLPSGALEISGLQPSDTG-EYRCVV 212 (1381)
T ss_pred CccccCccceeEecCCcEEEEEEEcC--ccCceeEEecccccc-----cCCCcEEEcCCCcEEecccccCCCc-eEEEEE
Confidence 57999999999999999999999965 222289999999853 5677999999999999999999995 999999
Q ss_pred eeccCCcEEeCCCeEEEEe
Q psy9140 88 THKLTGERKISPPSQVMVS 106 (114)
Q Consensus 88 ~n~l~~~~~~s~~a~L~V~ 106 (114)
.+. +..+.|+.|+|.|+
T Consensus 213 t~g--~~~r~S~~a~ltv~ 229 (1381)
T KOG4221|consen 213 TGG--ASQRTSNEAELTVL 229 (1381)
T ss_pred ecC--CcCCccceeEEEec
Confidence 996 55577889999999
No 77
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.49 E-value=6.6e-14 Score=85.66 Aligned_cols=69 Identities=22% Similarity=0.366 Sum_probs=51.8
Q ss_pred EEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEE-ccCCcEEEeecCCCCCCeeeEEEEeeccCCcEEeCCCeEE
Q psy9140 25 AVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSI-TTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQV 103 (114)
Q Consensus 25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v-~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L 103 (114)
+.|.|.+.+++.| .++|+|++..+ ..++... ..++.|.|.+++.+|+| .|+|.|.|.++. .+....|
T Consensus 1 v~l~C~~~g~P~p--~v~W~k~~~~~------~~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~a~N~~G~---~~~~~~l 68 (71)
T cd05731 1 LLLECIAEGLPTP--EISWIKIGGEL------PADRTKFENFNKTLKIDNVSEEDDG-EYRCTASNSLGS---ARHTISV 68 (71)
T ss_pred CEEEEEeeEecCC--eEEEEECCeEC------CCCceeEecCCCEEEECCCCHHHCE-EEEEEEEeCCce---EEEEEEE
Confidence 4799999887655 89999998753 1233333 33678999999999995 999999999864 3445666
Q ss_pred EE
Q psy9140 104 MV 105 (114)
Q Consensus 104 ~V 105 (114)
.|
T Consensus 69 ~V 70 (71)
T cd05731 69 TV 70 (71)
T ss_pred EE
Confidence 65
No 78
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.49 E-value=3.9e-13 Score=89.54 Aligned_cols=83 Identities=18% Similarity=0.265 Sum_probs=62.6
Q ss_pred cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEcc----CC---cEEEeecCCCCCC
Q psy9140 8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT----AG---ALHIRDTGMEDSY 80 (114)
Q Consensus 8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~----~G---~L~I~~v~~~D~g 80 (114)
+|.-.....+.+.+|++|.|.|.+.+.++|. .|.|.+++..| ....++||.|.. .| +|.|.++..+|-+
T Consensus 2 pP~i~~~~s~~~~~G~~~~L~C~~~s~P~P~-~i~W~w~~~~i---~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~ 77 (98)
T cd05898 2 PPIISSEQVQYAVRGERGKVKCFIGSTPPPD-RIAWAWKENVL---ESGTSERYTVERTSTGSGVLSTLTINNIMEADFQ 77 (98)
T ss_pred CCEEecCceEEEeCCCcEEEEEEEccCCCCc-EEEEEEccccc---cCCCCCCEEEEEEccCCCcEEEEEECCCccccCC
Confidence 3445667788999999999999997765443 77888877643 223468999853 23 6999999988843
Q ss_pred eeeEEEEeeccCCc
Q psy9140 81 IRYYCQTTHKLTGE 94 (114)
Q Consensus 81 g~Y~C~a~n~l~~~ 94 (114)
|.|.|.|.|.++..
T Consensus 78 g~Y~C~a~N~~G~d 91 (98)
T cd05898 78 THYNCTAWNSFGSG 91 (98)
T ss_pred cEEEEEEEeCCccc
Confidence 59999999999753
No 79
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.48 E-value=7.7e-14 Score=86.86 Aligned_cols=60 Identities=25% Similarity=0.340 Sum_probs=48.8
Q ss_pred EEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCC
Q psy9140 25 AVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTG 93 (114)
Q Consensus 25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~ 93 (114)
+.|.|.+.++++| .+.|+||+..+ ..+.|+. ...+.|.|.+++.+|+| .|+|.|.|.+++
T Consensus 1 ~~l~c~v~g~P~p--~v~W~k~g~~l-----~~~~~~~-~~~~~L~I~~v~~~D~G-~YtC~a~N~~g~ 60 (71)
T cd04976 1 VRLPVKVKAYPPP--EIQWYKNGKLI-----SEKNRTK-KSGHSLTIKDVTEEDAG-NYTVVLTNKQAK 60 (71)
T ss_pred CEEEeEEEEeCCC--EEEEEECCEEC-----CCCCEEE-cCCCEEEECcCCHHHCE-EEEEEEEcCCcc
Confidence 3699999887655 89999999854 3345664 45789999999999995 999999999865
No 80
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.48 E-value=7.1e-14 Score=87.43 Aligned_cols=59 Identities=15% Similarity=0.209 Sum_probs=47.3
Q ss_pred EEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCC
Q psy9140 25 AVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTG 93 (114)
Q Consensus 25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~ 93 (114)
+.|+|.+.+++.| .++|+||+..+ ..+.++ ..++.|.|.+++.+|+| .|+|.|.|.++.
T Consensus 1 ~~~~c~v~G~P~P--~v~W~k~g~~l-----~~~~~~--~~~~~L~I~~v~~~D~G-~YtC~a~N~~G~ 59 (70)
T cd05864 1 VKIPVKYYGYPPP--EVKWYKNGQLI-----VLNHTF--KRGVHLTIYEVTEKDAG-NYTVVLTNPITK 59 (70)
T ss_pred CEEEeEEEEeCCC--EEEEEECCEEC-----CCCCEE--ccCCEEEECcCCHHHCE-EEEEEEEECCCc
Confidence 4699999888666 89999999864 233333 34568999999999995 999999999875
No 81
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.47 E-value=1.2e-13 Score=86.23 Aligned_cols=69 Identities=19% Similarity=0.259 Sum_probs=51.9
Q ss_pred EEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCC
Q psy9140 18 FVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTG 93 (114)
Q Consensus 18 ~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~ 93 (114)
.+..|+++.|.|.+.+++.+ .+.|+|++..+.. ...+......+.|.|.+++.+|+| .|+|.|.|.++.
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p--~i~W~k~~~~~~~----~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~a~N~~G~ 73 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRP--DITWLKDNKPLTP----TEIGESRKKKWTLSLKNLKPEDSG-KYTCHVSNRAGE 73 (82)
T ss_pred eccCCCeEEEEEEeeEeCCC--cEEEEECCcCCcC----CccceecCceEEEEEccCChhhCE-EEEEEEEcCCcc
Confidence 45679999999999776555 7999999986421 112222223468999999999995 999999998763
No 82
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.46 E-value=3.6e-13 Score=88.37 Aligned_cols=72 Identities=17% Similarity=0.275 Sum_probs=54.2
Q ss_pred eeEEEeCCeEEEEeecCCCCCC--cc-eEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccC
Q psy9140 16 NTFVLRGNIAVLQCNIPAYNHN--LL-LIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLT 92 (114)
Q Consensus 16 d~~v~~G~~AvL~C~~~~~~~~--~~-~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~ 92 (114)
.+.+.+|.++.|+|........ +. .+.|+||+..+ ..+.+. +..++.|.|.+|+.+|+| .|+|.|.|.++
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i-----~~~~~~-~~~~~~L~I~~v~~~DsG-~YtC~~~n~~~ 76 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLL-----EGDRKR-FVKGSKLLIQNVTEEDAG-NYTCKLTFTHN 76 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEEC-----CCCccE-EecCCEEEEeeCChhhCE-EEEEEEEecCC
Confidence 3568899999999987432211 12 89999999864 233333 336899999999999995 99999999987
Q ss_pred Cc
Q psy9140 93 GE 94 (114)
Q Consensus 93 ~~ 94 (114)
+.
T Consensus 77 ~~ 78 (92)
T cd05757 77 GK 78 (92)
T ss_pred CE
Confidence 64
No 83
>KOG4221|consensus
Probab=99.45 E-value=3.6e-13 Score=118.68 Aligned_cols=95 Identities=23% Similarity=0.347 Sum_probs=81.9
Q ss_pred ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEe
Q psy9140 9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTT 88 (114)
Q Consensus 9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~ 88 (114)
.|-..|+...+.+|+.++|.|.+.+.++| .|.|+||+..|. ..+.||.+...++|.|++++.+|+| .|+|+|.
T Consensus 239 ~fl~~p~~~~v~~g~~v~leCvvs~~p~p--~v~Wlrng~~i~----~ds~rivl~g~~slliS~a~~~dSg-~YtC~At 311 (1381)
T KOG4221|consen 239 VFLDEPSNAVVVEGDDVVLECVVSGVPKP--SVKWLRNGEKIS----VDSYRIVLVGGSSLLISNATDDDSG-KYTCRAT 311 (1381)
T ss_pred eeecCCCccccccCCcEEEEEEecCCCCC--ceEEeeCCeeee----ecceEEEEecccceEEeccccccCc-eEEEEec
Confidence 47889999999999999999999887666 899999999763 2347888888899999999999995 9999999
Q ss_pred eccCCcEEeCCCeEEEEeccccccc
Q psy9140 89 HKLTGERKISPPSQVMVSEIALPLK 113 (114)
Q Consensus 89 n~l~~~~~~s~~a~L~V~~~~~~~~ 113 (114)
|.-+. ..+.|.|.|..|+++++
T Consensus 312 n~~D~---idasaev~V~a~P~~~~ 333 (1381)
T KOG4221|consen 312 NTNDS---IDASAEVTVLAPPGFTK 333 (1381)
T ss_pred CCCcc---cccceEEEEEcCCCCCC
Confidence 96554 56699999999999875
No 84
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.45 E-value=5.6e-13 Score=84.32 Aligned_cols=63 Identities=21% Similarity=0.315 Sum_probs=49.1
Q ss_pred EEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEcc-CCcEEEeecCCC----CCCeeeEEEEeeccCC
Q psy9140 25 AVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT-AGALHIRDTGME----DSYIRYYCQTTHKLTG 93 (114)
Q Consensus 25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~-~G~L~I~~v~~~----D~gg~Y~C~a~n~l~~ 93 (114)
+.|.|.+.+.+.| .++|+||+..+ ....+.++.+.+ +|+|.|..+..+ |+ |.|+|.|.|.++.
T Consensus 1 ~~l~C~a~G~P~P--~i~W~k~g~~l---~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~-G~Y~C~A~N~~G~ 68 (77)
T cd05874 1 IVIQCEAKGKPPP--SFSWTRNGTHF---DIDKDPKVTMKPNTGTLVINIMNGEKAEAYE-GVYQCTARNERGA 68 (77)
T ss_pred CEEEeeCcccCCC--eEEEEECCeEC---CCcCCCCEEEeCCCceEEEeccccCCCCCCC-EEEEEEEEcCCCe
Confidence 3799999887555 89999998864 234456777654 799999999864 67 5999999999874
No 85
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.44 E-value=1.4e-12 Score=85.28 Aligned_cols=83 Identities=17% Similarity=0.233 Sum_probs=58.6
Q ss_pred eEEEeCCeEEEEeecCCCCCCcceEEEeeCCe--eeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCCc
Q psy9140 17 TFVLRGNIAVLQCNIPAYNHNLLLIAWLREGV--SEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGE 94 (114)
Q Consensus 17 ~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~--~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~ 94 (114)
..+.+|++|.|.|.. ..+.+ .++|+|++. ... .....++|+.+. ++.|.|++++.+|+| .|+|.|.|...++
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~p--~v~Wykq~~g~~~~-~~~~~~~r~~~~-~~~L~I~~~~~~DsG-~Y~C~a~~~~~~~ 79 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQA--SVKWLFQRGGDQRK-EEVKTEERLIHT-ERGLLLRSLQRSDAG-VYTCTAVEHSFSQ 79 (91)
T ss_pred EEEecCCcEEEEEEC-CCCCc--eEEEEEECCCCCcc-ccccccccEEEe-cCeEEEeeCChhHCE-EEEEEEEccCCeE
Confidence 468899999999995 33323 899998432 110 012245788775 578999999999995 9999999654443
Q ss_pred EEeCCCeEEEEec
Q psy9140 95 RKISPPSQVMVSE 107 (114)
Q Consensus 95 ~~~s~~a~L~V~~ 107 (114)
.. ..++|.|-+
T Consensus 80 ~~--~~~~l~v~~ 90 (91)
T cd05871 80 TL--AKYTLHVIE 90 (91)
T ss_pred EE--EEEEEEEec
Confidence 22 277888765
No 86
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.44 E-value=2.5e-13 Score=84.50 Aligned_cols=56 Identities=20% Similarity=0.344 Sum_probs=45.7
Q ss_pred EEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCC
Q psy9140 25 AVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTG 93 (114)
Q Consensus 25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~ 93 (114)
+.|.|.+.++++| .++|+|||..+ . .| ...+.|.|.++..+|+| .|+|.|.|.+++
T Consensus 1 ~~l~c~v~g~P~P--~v~W~kdg~~l-----~--~~---~~~~~L~i~~v~~~D~G-~YtC~a~N~~g~ 56 (67)
T cd05863 1 VKLPVKVAAYPPP--EFQWYKDGKLI-----S--GK---HSQHSLQIKDVTEASAG-TYTLVLWNSAAG 56 (67)
T ss_pred CEEEEEEEEeCCC--EEEEEECCEEC-----c--cc---CCcCEEEECCCCHHHCE-EEEEEEEECCcc
Confidence 3699999888766 89999999864 1 12 13579999999999995 999999999875
No 87
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.44 E-value=5.1e-13 Score=85.07 Aligned_cols=79 Identities=19% Similarity=0.280 Sum_probs=58.8
Q ss_pred eeccceeEEEeCCeEEEEeecCC-CCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEee
Q psy9140 11 EINTGNTFVLRGNIAVLQCNIPA-YNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTH 89 (114)
Q Consensus 11 ~v~~~d~~v~~G~~AvL~C~~~~-~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n 89 (114)
...|++..+.+|.+|.|.|.+.+ .+.+ .+.|.|++..+ . .+. ...+|.|.|.+++.+|+| .|+|.|.|
T Consensus 5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~--~i~W~~~~~~~-----~--~~~-~~~~~~L~I~~v~~~DsG-~Y~C~a~n 73 (85)
T cd05754 5 VEEPRSQEVRPGADVSFICRAKSKSPAY--TLVWTRVGGGL-----P--SRA-MDFNGILTIRNVQLSDAG-TYVCTGSN 73 (85)
T ss_pred ecCCCceEEcCCCCEEEEEEcCCCCCCc--EEEEEECCCcC-----C--Ccc-cccCCEEEECCCCHHHCE-EEEEEEec
Confidence 34677889999999999999854 3222 89999998742 1 122 234789999999999995 99999999
Q ss_pred ccCCcEEeCCCeEE
Q psy9140 90 KLTGERKISPPSQV 103 (114)
Q Consensus 90 ~l~~~~~~s~~a~L 103 (114)
.++. .+..|+|
T Consensus 74 ~~g~---~~~~~~l 84 (85)
T cd05754 74 MLDT---DEATATL 84 (85)
T ss_pred cCCe---EeEEEEE
Confidence 9864 3434444
No 88
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.43 E-value=1.2e-12 Score=85.07 Aligned_cols=85 Identities=18% Similarity=0.309 Sum_probs=59.3
Q ss_pred cceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeee---eccCCcEEEc----cCCcEEEeecCCCCCCeeeEEE
Q psy9140 14 TGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSI---IHSGGRYSIT----TAGALHIRDTGMEDSYIRYYCQ 86 (114)
Q Consensus 14 ~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~---~~~~~r~~v~----~~G~L~I~~v~~~D~gg~Y~C~ 86 (114)
+++..+.+|++|.|+|.+.+.+.+ .+.|++.+..+++.. ...++||.+. .++.|.|++|+.+|+| .|+|.
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~~~~~--~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG-~Y~C~ 80 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKNNDNS--SLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEG-RYTCS 80 (95)
T ss_pred CCcEEEcCCCCEEEEEEECCCCCc--eEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCE-EEEEE
Confidence 467889999999999998654333 799987444322111 1245799884 2357999999999995 99999
Q ss_pred EeeccCCcEEeCCCeEEEE
Q psy9140 87 TTHKLTGERKISPPSQVMV 105 (114)
Q Consensus 87 a~n~l~~~~~~s~~a~L~V 105 (114)
+.+...+ +..+.|.|
T Consensus 81 ~~~~~~~----~~~~~~~v 95 (95)
T cd05717 81 LYTMPVQ----TAKATVTV 95 (95)
T ss_pred EecCCCc----eEEEEEEC
Confidence 9986422 33455543
No 89
>KOG3513|consensus
Probab=99.43 E-value=7e-13 Score=116.11 Aligned_cols=93 Identities=22% Similarity=0.313 Sum_probs=79.1
Q ss_pred ccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEE
Q psy9140 7 SSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQ 86 (114)
Q Consensus 7 ~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~ 86 (114)
.|.|...++|..+-.|..++|.|.+.+.+.| .++|+|++..+. ....+.|+.|. +|.|.|+||+.+|+| +|.|.
T Consensus 331 ~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p--~v~WlkNg~pl~--~~~r~~~~~i~-~g~L~is~v~~~dsg-~YQC~ 404 (1051)
T KOG3513|consen 331 PPYWLQKPQDTEADTGSNVTLECKASGKPNP--TVKWLKNGEPLE--PAERDPRYKID-DGTLIISNVQESDSG-VYQCI 404 (1051)
T ss_pred CchhhcccceeEecCCCCeEEEEEecCCCCC--ceEEeeCCeecC--ccCCCcceEEe-CCEEEEEecccccCe-EEEee
Confidence 4678899999999999999999999776555 899999999763 23445569887 799999999999995 99999
Q ss_pred EeeccCCcEEeCCCeEEEEecc
Q psy9140 87 TTHKLTGERKISPPSQVMVSEI 108 (114)
Q Consensus 87 a~n~l~~~~~~s~~a~L~V~~~ 108 (114)
|.|+++- ..+.|.|.|...
T Consensus 405 A~Nk~G~---i~anA~L~V~a~ 423 (1051)
T KOG3513|consen 405 AENKYGT---IYANAELKVLAS 423 (1051)
T ss_pred eecccce---EeeeeEEEEEcc
Confidence 9999975 566899999865
No 90
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.42 E-value=3.2e-13 Score=85.19 Aligned_cols=61 Identities=23% Similarity=0.326 Sum_probs=49.1
Q ss_pred EEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCCc
Q psy9140 26 VLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGE 94 (114)
Q Consensus 26 vL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~ 94 (114)
.|.|.+.++++| .+.|+||+..+ .....||.+. +++|.|.+|+.+|+| .|+|.|.|...++
T Consensus 2 ~l~c~v~g~P~P--~v~W~kdg~~l----~~~~~~~~~~-~~~L~I~~v~~~D~G-~YtC~a~~~~~~~ 62 (72)
T cd07702 2 RLTPKVKAFPAP--EVIWLKDGLPA----AEKCSRYHVD-GYSLVIKDVTEEDAG-IYTILLGIKQYNL 62 (72)
T ss_pred eEEeeEEEcCCC--eEEEEECCEEC----CCCCcEEEeC-CCEEEECcCCHHHCE-EEEEEEEccccce
Confidence 589999888766 89999999854 1223677664 569999999999995 9999999987665
No 91
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.41 E-value=9.5e-13 Score=84.30 Aligned_cols=59 Identities=8% Similarity=0.197 Sum_probs=45.4
Q ss_pred EEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEE----------ccCCcEEEeecCCCCCCeeeEEEEeeccCC
Q psy9140 27 LQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSI----------TTAGALHIRDTGMEDSYIRYYCQTTHKLTG 93 (114)
Q Consensus 27 L~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v----------~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~ 93 (114)
|+|.+.++++| .++|+|||..+ ..+.++.+ ...|.|.|.+++.+|+| .|+|.|.|.++.
T Consensus 3 i~~~v~G~P~P--~v~W~k~g~~i-----~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G-~YtC~A~N~~G~ 71 (81)
T cd04971 3 IPFTVRGNPKP--TLTWYHNGAVL-----NESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNG-NYTLVASNEYGQ 71 (81)
T ss_pred EEEEeEeeCCC--cEEEEECCEEC-----cCCCceeEEEEeecccccccEEEEEECCCCcccCe-EEEEEEEeCCCC
Confidence 68998887666 89999999865 22333221 12567999999999995 999999999874
No 92
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.40 E-value=1.1e-12 Score=84.22 Aligned_cols=59 Identities=10% Similarity=0.196 Sum_probs=45.9
Q ss_pred EEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEE--------ccCCcEEEeecCCCCCCeeeEEEEeeccCC
Q psy9140 27 LQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSI--------TTAGALHIRDTGMEDSYIRYYCQTTHKLTG 93 (114)
Q Consensus 27 L~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v--------~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~ 93 (114)
|+|.+.|+++| .++|+|||..| ..+.|+.. ...|.|.|.+++.+|+| .|+|+|.|.++.
T Consensus 3 i~~~v~G~P~P--ti~W~kng~~l-----~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G-~YtC~A~N~~G~ 69 (79)
T cd05855 3 IPFTVKGNPKP--TLQWFHEGAIL-----NESEYICTKIHVINNTEYHGCLQLDNPTHLNNG-IYTLVAKNEYGE 69 (79)
T ss_pred EEEEEeEeCCC--ceEEEECCEEC-----CCCcceeeeeEeecccceEEEEEECCCCcccCE-EEEEEEEcCCcc
Confidence 68999888766 89999999864 33333211 12568999999999995 999999999874
No 93
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.36 E-value=1.8e-12 Score=82.42 Aligned_cols=79 Identities=20% Similarity=0.326 Sum_probs=53.2
Q ss_pred CCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEE-c---cCCcEEEeecCCCCCCeeeEEEEeeccCCcEEe
Q psy9140 22 GNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSI-T---TAGALHIRDTGMEDSYIRYYCQTTHKLTGERKI 97 (114)
Q Consensus 22 G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v-~---~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~ 97 (114)
|+++.|.|.+.+.+.+++.+.|.+++..+.... ....+... . ..+.|.|.+|+.+|+| .|+|.|.|..+. .
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~s~L~I~~v~~~DsG-~Y~C~a~n~~~~---~ 75 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGK-SMVTRQSLSEATELSSTLTIPNATLKDSG-TYTCAASSGTMD---Q 75 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCce-EeecccccccceEEEEEEEECCCChhhCE-EEEEEEccCCCc---e
Confidence 789999999977522223899998876432111 11112211 1 2468999999999995 999999999765 4
Q ss_pred CCCeEEEE
Q psy9140 98 SPPSQVMV 105 (114)
Q Consensus 98 s~~a~L~V 105 (114)
+..++|.|
T Consensus 76 ~~s~~v~v 83 (84)
T cd05742 76 KESTKVNI 83 (84)
T ss_pred EEEEEEEE
Confidence 55666665
No 94
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.35 E-value=9.6e-12 Score=72.19 Aligned_cols=62 Identities=23% Similarity=0.405 Sum_probs=48.0
Q ss_pred eCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeecc
Q psy9140 21 RGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKL 91 (114)
Q Consensus 21 ~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l 91 (114)
+|.++.|.|.+.+++.+ .+.|.+++..+ . ........++.|.|.+++.+|+| .|+|.+.|..
T Consensus 1 ~g~~~~l~C~~~~~~~~--~v~W~~~~~~~-----~-~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~n~~ 62 (63)
T smart00408 1 EGQSVTLTCPAEGDPVP--NITWLKDGKPL-----P-ESNRLSASGSTLTIKSVSLEDSG-EYTCVAENSA 62 (63)
T ss_pred CCceEEEEeeCccCCCC--eEEEEECCEEC-----C-CCCEEecCCcEEEEeeCCcccCE-EEEEEEecCC
Confidence 58999999997554333 79999998754 2 23333445789999999999995 9999999864
No 95
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.32 E-value=5.3e-12 Score=77.87 Aligned_cols=62 Identities=24% Similarity=0.463 Sum_probs=45.3
Q ss_pred EEEeecCC-CCCCcceEEEeeCCeeeeeeeeccCCc-EEE---ccCCcEEEeecCCCCCCeeeEEEEeeccCC
Q psy9140 26 VLQCNIPA-YNHNLLLIAWLREGVSEARSIIHSGGR-YSI---TTAGALHIRDTGMEDSYIRYYCQTTHKLTG 93 (114)
Q Consensus 26 vL~C~~~~-~~~~~~~vsW~kd~~~~~~~~~~~~~r-~~v---~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~ 93 (114)
+|.|.+.+ .+.+ .+.|+||+..+. .....+ +.+ ...+.|.|.+++.+|+| .|+|.|.|.++.
T Consensus 2 ~l~C~~~g~~P~p--~~~W~k~g~~l~---~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a~N~~G~ 68 (75)
T cd05750 2 VLKCEATSEYPSL--RFKWFKDGKELN---RKNKPRNIKIRNKKKNSELQINKAKLADSG-EYTCVVENILGN 68 (75)
T ss_pred EEEEEccCCCCCc--eEEEEcCCeecc---ccCCcceEEEEecCceEEEEEccCCcccCe-EEEEEEEEcCCc
Confidence 69999987 5443 899999998642 111111 223 12468999999999995 999999999875
No 96
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=99.31 E-value=1.8e-11 Score=82.29 Aligned_cols=78 Identities=27% Similarity=0.262 Sum_probs=59.3
Q ss_pred eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCe-----eee-eeee--------ccCCcEEEccCCcEEEeecCC
Q psy9140 11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGV-----SEA-RSII--------HSGGRYSITTAGALHIRDTGM 76 (114)
Q Consensus 11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~-----~~~-~~~~--------~~~~r~~v~~~G~L~I~~v~~ 76 (114)
.++|....|.+|+.|+|.|.- ++.+...++|+|... .+. +... .-.+|..+.+||+|.|++|+.
T Consensus 2 tie~~p~~~~~G~~V~L~v~~--~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~ 79 (105)
T cd05774 2 TIELVPPQVAEGENVLLLVHN--LPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQ 79 (105)
T ss_pred eEeccCCcccCCCCEEEEecC--CCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCc
Confidence 567888899999999999975 323322899999732 111 1110 236899999999999999999
Q ss_pred CCCCeeeEEEEeecc
Q psy9140 77 EDSYIRYYCQTTHKL 91 (114)
Q Consensus 77 ~D~gg~Y~C~a~n~l 91 (114)
+|+| .|+|.+.+.-
T Consensus 80 ~D~G-~Y~~~v~~~~ 93 (105)
T cd05774 80 KDTG-FYTLQTITTN 93 (105)
T ss_pred ccCE-EEEEEEEeCC
Confidence 9995 9999999964
No 97
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.31 E-value=9.9e-12 Score=97.50 Aligned_cols=84 Identities=14% Similarity=0.207 Sum_probs=61.3
Q ss_pred cceeeccceeEEEeCCeEEEEeecCCCCCCcc-eEEEeeCCeeeeeeeeccCCcEEEcc-----------CCcEEEeecC
Q psy9140 8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARSIIHSGGRYSITT-----------AGALHIRDTG 75 (114)
Q Consensus 8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd~~~~~~~~~~~~~r~~v~~-----------~G~L~I~~v~ 75 (114)
++....|++..+..|..|.|.|.+.+++.+.. .+.|.|||..+.......++|+.+.. .+.|.|.+|+
T Consensus 221 pp~~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~ 300 (326)
T PHA02785 221 PPTMQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVK 300 (326)
T ss_pred CceecCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcc
Confidence 44456688888999999999999977655422 79999999865211111234544321 4689999999
Q ss_pred CCCCCeeeEEEEeeccC
Q psy9140 76 MEDSYIRYYCQTTHKLT 92 (114)
Q Consensus 76 ~~D~gg~Y~C~a~n~l~ 92 (114)
.+|+ |.|+|.|.|..+
T Consensus 301 ~~D~-G~Y~C~A~n~~~ 316 (326)
T PHA02785 301 EEDA-TTFTCMAFTIPS 316 (326)
T ss_pred hhcC-eeeEEEEEeccC
Confidence 9999 599999999863
No 98
>smart00409 IG Immunoglobulin.
Probab=99.30 E-value=4.4e-11 Score=72.68 Aligned_cols=81 Identities=23% Similarity=0.417 Sum_probs=60.7
Q ss_pred cceeEEEeCCeEEEEeecCCCCCCcceEEEeeC-CeeeeeeeeccCCcEEEccC---CcEEEeecCCCCCCeeeEEEEee
Q psy9140 14 TGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE-GVSEARSIIHSGGRYSITTA---GALHIRDTGMEDSYIRYYCQTTH 89 (114)
Q Consensus 14 ~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd-~~~~~~~~~~~~~r~~v~~~---G~L~I~~v~~~D~gg~Y~C~a~n 89 (114)
|+...+.+|+++.|.|.+.+... ..+.|.++ +..+ ..+.|+.+... ..|.|.+++.+|+| .|+|.+.+
T Consensus 1 ~~~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~~~~~v-----~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~v~~ 72 (86)
T smart00409 1 PPSVTVKEGESVTLSCEVSGSPP--PEVTWYKQGGKLL-----AESGRFSVSRSGSNSTLTISNVTPEDSG-TYTCAATN 72 (86)
T ss_pred CCcEEEeCCCeEEEEEEEccCCC--CeEEEEECCCEEc-----CCCCcEEEEEcCCeeEEEEEeeccccCe-EEEEEEEc
Confidence 45677889999999999976522 28999998 6643 24677777665 68999999999995 99999997
Q ss_pred ccCCcEEeCCCeEEEE
Q psy9140 90 KLTGERKISPPSQVMV 105 (114)
Q Consensus 90 ~l~~~~~~s~~a~L~V 105 (114)
..+. ..+. ..|.|
T Consensus 73 ~~~~--~~~~-~~l~V 85 (86)
T smart00409 73 SSGS--ASST-TTLTV 85 (86)
T ss_pred CCCe--EEEE-EEEEE
Confidence 6443 2232 66665
No 99
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.30 E-value=4.4e-11 Score=72.68 Aligned_cols=81 Identities=23% Similarity=0.417 Sum_probs=60.7
Q ss_pred cceeEEEeCCeEEEEeecCCCCCCcceEEEeeC-CeeeeeeeeccCCcEEEccC---CcEEEeecCCCCCCeeeEEEEee
Q psy9140 14 TGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE-GVSEARSIIHSGGRYSITTA---GALHIRDTGMEDSYIRYYCQTTH 89 (114)
Q Consensus 14 ~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd-~~~~~~~~~~~~~r~~v~~~---G~L~I~~v~~~D~gg~Y~C~a~n 89 (114)
|+...+.+|+++.|.|.+.+... ..+.|.++ +..+ ..+.|+.+... ..|.|.+++.+|+| .|+|.+.+
T Consensus 1 ~~~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~~~~~v-----~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~v~~ 72 (86)
T smart00410 1 PPSVTVKEGESVTLSCEVSGSPP--PEVTWYKQGGKLL-----AESGRFSVSRSGSNSTLTISNVTPEDSG-TYTCAATN 72 (86)
T ss_pred CCcEEEeCCCeEEEEEEEccCCC--CeEEEEECCCEEc-----CCCCcEEEEEcCCeeEEEEEeeccccCe-EEEEEEEc
Confidence 45677889999999999976522 28999998 6643 24677777665 68999999999995 99999997
Q ss_pred ccCCcEEeCCCeEEEE
Q psy9140 90 KLTGERKISPPSQVMV 105 (114)
Q Consensus 90 ~l~~~~~~s~~a~L~V 105 (114)
..+. ..+. ..|.|
T Consensus 73 ~~~~--~~~~-~~l~V 85 (86)
T smart00410 73 SSGS--ASST-TTLTV 85 (86)
T ss_pred CCCe--EEEE-EEEEE
Confidence 6443 2232 66665
No 100
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.30 E-value=2.4e-11 Score=75.91 Aligned_cols=68 Identities=22% Similarity=0.308 Sum_probs=51.3
Q ss_pred EEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEc----cCCcEEEeecCCCCCCeeeEEEEeeccCC
Q psy9140 18 FVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSIT----TAGALHIRDTGMEDSYIRYYCQTTHKLTG 93 (114)
Q Consensus 18 ~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~----~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~ 93 (114)
.+.+|.++.|.|.+.+++.+ .+.|+|++..+ ..+.++... ....|.|.+++.+|+| .|.|.+.|.++.
T Consensus 5 ~~~~G~~~~l~C~~~~~p~~--~v~W~k~~~~~-----~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~Y~C~~~n~~g~ 76 (85)
T cd05729 5 AVPAGSTVRLKCPASGNPRP--TITWLKDGKPF-----KKEHRIGGYKVRKKKWTLILESVVPSDSG-KYTCIVENKYGS 76 (85)
T ss_pred EecCCCcEEEEEEcCCCCCC--eEEEEECCEEC-----cccCceeEEEccCcEEEEEEeECCcccCE-EEEEEEEECCce
Confidence 45689999999999776444 79999998854 223333321 2347999999999995 999999998754
No 101
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.29 E-value=9.6e-12 Score=77.58 Aligned_cols=66 Identities=21% Similarity=0.414 Sum_probs=46.3
Q ss_pred EEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEcc---CCcEEEeecCCCCCCeeeEEEEeeccCC
Q psy9140 25 AVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT---AGALHIRDTGMEDSYIRYYCQTTHKLTG 93 (114)
Q Consensus 25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~---~G~L~I~~v~~~D~gg~Y~C~a~n~l~~ 93 (114)
++|+|.+.+.. |.+.+.|+|++..+... ...+.|+.+.. .+.|.|.+++.+|+| .|+|.|.|.++.
T Consensus 1 ~~L~C~a~~~~-p~~~~~W~~~g~~i~~~-~~~~~~~~~~~~~~~~~L~I~~~~~~DsG-~Y~C~a~N~~g~ 69 (76)
T cd05895 1 LVLRCETVSEY-PSLRFKWFKNGKEIGAK-NKPDNKIKIRKKKKSSELQISKASLADNG-EYKCMVSSKLGN 69 (76)
T ss_pred CEEEEecccCC-CCCceEEEECCcccccC-CCCCceEEEEeCCcEEEEEECcCCcccCE-EEEEEEEeCCCc
Confidence 47999985421 22289999998865211 11234555432 367999999999995 999999999864
No 102
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.26 E-value=3.2e-11 Score=77.31 Aligned_cols=80 Identities=21% Similarity=0.330 Sum_probs=57.8
Q ss_pred eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeecc
Q psy9140 12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKL 91 (114)
Q Consensus 12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l 91 (114)
+++....|.+|++++|+|.+...... ..+.|+|++..+. + ...+++|.|.+++.+|+| .|+|.|.|..
T Consensus 4 l~~p~~~V~~G~~vtL~C~~~~~~~~-~~~~w~k~g~~~~---------~-~~~~~~l~I~~~~~~dsG-~Y~C~~~~~~ 71 (83)
T cd05753 4 LQVPSRVVFEGEPLVLRCHGWKNKPV-YKVTYYRDGKAKK---------Y-SHSNSNLSIPQATLSDSG-SYHCSGIIGS 71 (83)
T ss_pred EECCcceecCCCCEEEEeeCCCCCcc-eEEEEEECCeEcc---------c-cCCCceEEECccCHHHCE-EEEEEEEeCC
Confidence 44556679999999999998532111 1789999987531 1 112578999999999995 9999999986
Q ss_pred CCcEEeCCCeEEEE
Q psy9140 92 TGERKISPPSQVMV 105 (114)
Q Consensus 92 ~~~~~~s~~a~L~V 105 (114)
.. +.|.+-+|.|
T Consensus 72 ~~--~~s~~~~i~~ 83 (83)
T cd05753 72 YD--YSSEPVSITV 83 (83)
T ss_pred ce--ecCCCEEEEC
Confidence 43 3455666654
No 103
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.24 E-value=4.6e-11 Score=77.02 Aligned_cols=82 Identities=24% Similarity=0.322 Sum_probs=54.8
Q ss_pred CCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEE----ccCCcEEEeecCCCCCCeeeEEEEeeccCCcEEe
Q psy9140 22 GNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSI----TTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKI 97 (114)
Q Consensus 22 G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v----~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~ 97 (114)
|+++.|.|.+.+.+.+.+.+.|...+............|... .-...|.|.+++.+|+| .|+|.|.|..+ ..
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG-~Y~C~a~n~~~---~~ 76 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLG-RYTCTASSGQM---IA 76 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCE-EEEEEEeecce---Ee
Confidence 789999999954332222789988776431111111112111 12468999999999995 99999999754 35
Q ss_pred CCCeEEEEec
Q psy9140 98 SPPSQVMVSE 107 (114)
Q Consensus 98 s~~a~L~V~~ 107 (114)
+..++|.|.|
T Consensus 77 ~~~t~~~V~~ 86 (86)
T cd05862 77 KNSTIVIVHE 86 (86)
T ss_pred cccEEEEEeC
Confidence 7788998875
No 104
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.24 E-value=5.4e-11 Score=89.58 Aligned_cols=74 Identities=19% Similarity=0.219 Sum_probs=56.5
Q ss_pred cceeEEEeCCeEEEEeecCCCC---CCcceEEEeeCCeeeeeeeeccCCcEEEccC-CcEEEeecCCCCCCeeeEEEEee
Q psy9140 14 TGNTFVLRGNIAVLQCNIPAYN---HNLLLIAWLREGVSEARSIIHSGGRYSITTA-GALHIRDTGMEDSYIRYYCQTTH 89 (114)
Q Consensus 14 ~~d~~v~~G~~AvL~C~~~~~~---~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~-G~L~I~~v~~~D~gg~Y~C~a~n 89 (114)
+.+..+.+|.++.|.|.+.+.. .+.+.++|+||+..+ ..++|+.+..+ +.|.|.+|+.+|+| .|+|.|..
T Consensus 136 ~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l-----~~~~r~~~~~~~~~L~I~~V~~~DsG-~YtC~a~~ 209 (227)
T PHA02826 136 TINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIV-----LYTDRIQLRNNNSTLVIKSATHDDSG-IYTCNLRF 209 (227)
T ss_pred CccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEEC-----CCCCCEEEeCCCCEEEECcCCHHhCE-EEEEEEEE
Confidence 3456778999999999974221 111289999999854 35678887654 47999999999995 99999998
Q ss_pred ccCC
Q psy9140 90 KLTG 93 (114)
Q Consensus 90 ~l~~ 93 (114)
...|
T Consensus 210 ~~~g 213 (227)
T PHA02826 210 NKNS 213 (227)
T ss_pred eECC
Confidence 7654
No 105
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=99.23 E-value=8.1e-11 Score=76.57 Aligned_cols=66 Identities=29% Similarity=0.366 Sum_probs=54.7
Q ss_pred cceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEee
Q psy9140 14 TGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTH 89 (114)
Q Consensus 14 ~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n 89 (114)
.++..|.+|+.++|+|...+..+ .+.|++++..+ ..+.|+.+..+| |.|.+++.+|+| .|+|.+.-
T Consensus 3 ~~~~tv~~g~~v~L~C~~~s~~A---~v~W~~ng~~l-----~~~~r~~~~~~G-LlI~~~~~~dsG-~Y~C~s~E 68 (85)
T cd05872 3 VKNRTVAPGADVVLPCQLRSNLA---SPVWLFNGTPL-----NAQFSYRVGTDG-LLILVTSPEHSG-TYRCYSEE 68 (85)
T ss_pred ceEEEEecCCCEEEECCCCCCCc---cEEEEECCccc-----CCCcceEEeCCC-CEEEECCHhhCE-EEEEEEec
Confidence 46788999999999999755322 79999999853 457899888766 779999999995 99999984
No 106
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=99.23 E-value=8.5e-11 Score=77.87 Aligned_cols=74 Identities=18% Similarity=0.414 Sum_probs=56.7
Q ss_pred cceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeee---eeccCCcEEEcc-CC---cEEEeecCCCCCCeeeEEE
Q psy9140 14 TGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARS---IIHSGGRYSITT-AG---ALHIRDTGMEDSYIRYYCQ 86 (114)
Q Consensus 14 ~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~---~~~~~~r~~v~~-~G---~L~I~~v~~~D~gg~Y~C~ 86 (114)
.++..+.+|++|.|.|.+...... .++|++-+..+++. ....+.||.+.. +| .|.|++++.+|+| .|.|.
T Consensus 4 ~~nvtv~~G~ta~L~C~v~~~~~~--~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G-~Y~Cq 80 (95)
T cd05881 4 TEDVTVVEGEVAIISCRVKNNDDS--VIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEG-RYFCQ 80 (95)
T ss_pred cCceEEcCCCcEEEEEEEccCCcc--EEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCE-EEEEE
Confidence 467889999999999999664332 68999877654421 113688999765 45 3999999999995 99999
Q ss_pred Eeec
Q psy9140 87 TTHK 90 (114)
Q Consensus 87 a~n~ 90 (114)
+...
T Consensus 81 v~t~ 84 (95)
T cd05881 81 LYTD 84 (95)
T ss_pred EEcc
Confidence 9874
No 107
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=99.19 E-value=3.7e-10 Score=74.36 Aligned_cols=92 Identities=22% Similarity=0.337 Sum_probs=64.0
Q ss_pred eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCee-----eeeee----eccCCcEEEccC-----CcEEEeecCCC
Q psy9140 12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVS-----EARSI----IHSGGRYSITTA-----GALHIRDTGME 77 (114)
Q Consensus 12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~-----~~~~~----~~~~~r~~v~~~-----G~L~I~~v~~~ 77 (114)
..|+...+.+|.+|.|.|.+.... . ..+.|+|.... ++... ....+||.+..+ -.|.|++++.+
T Consensus 3 q~~~~v~~~~G~~v~L~C~~~~~~-~-~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~ 80 (109)
T cd04983 3 QSPQSLSVQEGENVTLNCNYSTST-F-YYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLS 80 (109)
T ss_pred ecCCceEEcCCCCEEEEEEECCCC-c-cEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHH
Confidence 467788999999999999986531 1 27899985321 11110 124689987532 27999999999
Q ss_pred CCCeeeEEEEeeccC-CcEEeCCCeEEEEe
Q psy9140 78 DSYIRYYCQTTHKLT-GERKISPPSQVMVS 106 (114)
Q Consensus 78 D~gg~Y~C~a~n~l~-~~~~~s~~a~L~V~ 106 (114)
|+| .|.|.+.+.-. .....+..++|.|+
T Consensus 81 DsG-~Y~C~~~~~~~~~~~~~g~gt~l~V~ 109 (109)
T cd04983 81 DSA-VYFCALSESGGTGKLTFGKGTRLTVE 109 (109)
T ss_pred HCE-EEEEEEecCCCCcceEECCCEEEEEC
Confidence 995 99999997532 23344667888774
No 108
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.16 E-value=1.2e-10 Score=74.60 Aligned_cols=80 Identities=16% Similarity=0.259 Sum_probs=51.4
Q ss_pred CCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEcc---CCcEEEeecCCCCCCeeeEEEEeeccCCcEEeC
Q psy9140 22 GNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT---AGALHIRDTGMEDSYIRYYCQTTHKLTGERKIS 98 (114)
Q Consensus 22 G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~---~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s 98 (114)
|++++|.|.+.+.+.+ .+.|.+.+..+.. ......+..+.. ...|.|.+++.+|+| .|.|.|.|..++. ..+
T Consensus 1 Ge~~~l~C~~~~~~~~--~~~W~~~~~~~~~-~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG-~Y~C~a~n~~~~~-~~~ 75 (84)
T cd05861 1 GETITVNCIVQGNEVV--DFSWTYPGKDIGK-GIPEVEEVKVPATTLRSTLTFPHATVEDSG-TYECAAHESTQDQ-KAF 75 (84)
T ss_pred CCcEEEEEEEECCCcc--EEEEEECCccCCC-CceEEEEEecCCcEEEEEEEECCCCcCCCE-EEEEEEEECccCc-cee
Confidence 7899999999664332 8999987653210 011111222221 347999999999995 9999999976542 123
Q ss_pred CCeEEEEe
Q psy9140 99 PPSQVMVS 106 (114)
Q Consensus 99 ~~a~L~V~ 106 (114)
...+|.|.
T Consensus 76 ~sv~i~V~ 83 (84)
T cd05861 76 KKVNITVH 83 (84)
T ss_pred EEEEEEEe
Confidence 35566554
No 109
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.15 E-value=1.5e-10 Score=71.10 Aligned_cols=76 Identities=22% Similarity=0.399 Sum_probs=55.4
Q ss_pred ccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccC
Q psy9140 13 NTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLT 92 (114)
Q Consensus 13 ~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~ 92 (114)
.++...+.+|.++.|.|.+++.+.. .+.|.+++..+ ... .+.|.|.+++.+|.| .|+|.|.|..+
T Consensus 5 ~~~~~~v~~g~~~~l~C~~~~~p~~--~~~w~~~~~~~-----~~~-------~~~~~~~~~~~~~~g-~y~C~~~~~~~ 69 (80)
T PF13895_consen 5 SSSPQSVEEGDSVTLTCSVSGNPPP--QVQWYKNGSPI-----NSS-------QNGLFIPNVSPEDSG-NYTCRASNGSG 69 (80)
T ss_dssp EEESSEEETTSEEEEEEEEESSSSS--EEEEEETTEEE-----EEE-------SSEEEESSEEGGGTE-EEEEEEEETTE
T ss_pred EccceEEeCCCcEEEEEEEEcccce--eeeeeeeeeee-----eee-------eeeeeeeeeccccCE-EEEEEEEeCCC
Confidence 3445779999999999999764332 89999998753 111 122888999999995 99999999543
Q ss_pred CcEEeCCCeEEEE
Q psy9140 93 GERKISPPSQVMV 105 (114)
Q Consensus 93 ~~~~~s~~a~L~V 105 (114)
...|...+|.|
T Consensus 70 --~~~s~~~~v~V 80 (80)
T PF13895_consen 70 --SNTSTSVNVTV 80 (80)
T ss_dssp --EEEEEEEEEEE
T ss_pred --CeEeeeEEeeC
Confidence 24566666665
No 110
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.14 E-value=9.7e-11 Score=70.21 Aligned_cols=58 Identities=26% Similarity=0.448 Sum_probs=41.0
Q ss_pred CCeEEEEeec-CCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCc-----EEEeecCCCCCCeeeEEEE
Q psy9140 22 GNIAVLQCNI-PAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGA-----LHIRDTGMEDSYIRYYCQT 87 (114)
Q Consensus 22 G~~AvL~C~~-~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~-----L~I~~v~~~D~gg~Y~C~a 87 (114)
|++|.|.|.+ ... ++..++|.|++.... .........++. |.|.+++.+|+| .|+|.|
T Consensus 1 G~~v~L~C~~~~~~--~~~~~~W~~~~~~~~-----~~~~~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGP--PPTTVTWSKNGQSLP-----EGSTTNRSTNSVSSTSRLTISNVTPEDSG-TYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESS--STSEEEEEETTTTTS-----EEEEEEEEETTTEEEEEEEESSCTGGGTE-EEEEEE
T ss_pred CCeEEEEeecCCCC--CCcEEEEEECCcccc-----CcceeEeecccceeeeEEEEccCCHHHCE-EEEEEC
Confidence 8999999999 322 222899999988542 222222222232 999999999995 999987
No 111
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.13 E-value=2.7e-10 Score=89.40 Aligned_cols=90 Identities=16% Similarity=0.173 Sum_probs=64.4
Q ss_pred eeeccceeEEEeCCeEEEEeecC-CCC--CCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEE
Q psy9140 10 YEINTGNTFVLRGNIAVLQCNIP-AYN--HNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQ 86 (114)
Q Consensus 10 ~~v~~~d~~v~~G~~AvL~C~~~-~~~--~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~ 86 (114)
|...+..+.+.+|..+.|.|... .+. .+++.++|.|++. ..+.|+.+.++|.|.|.||+.+|+| .|+|.
T Consensus 124 ~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-------~~~~r~~~~~~~~L~i~~v~~~d~G-~Y~C~ 195 (326)
T PHA02785 124 IDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-------LRNKRLKQRTPGIITIEDVRKNDAG-YYTCV 195 (326)
T ss_pred cceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-------cCCcceEecCCCeEEEeecChhhCe-EEEEE
Confidence 44445556688999999999731 111 1222899988643 2567999998999999999999995 99999
Q ss_pred EeeccCCcEE-eCCCeEEEEec
Q psy9140 87 TTHKLTGERK-ISPPSQVMVSE 107 (114)
Q Consensus 87 a~n~l~~~~~-~s~~a~L~V~~ 107 (114)
|.|..++... .+..+.|.|++
T Consensus 196 ~~n~~g~~~~~~t~~v~l~V~~ 217 (326)
T PHA02785 196 LKYIYGDKTYNVTRIVKLEVRD 217 (326)
T ss_pred EEeccCCEEEeEEEEEEEEEec
Confidence 9998776421 23355677764
No 112
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=99.12 E-value=4.8e-10 Score=76.53 Aligned_cols=79 Identities=14% Similarity=0.123 Sum_probs=52.6
Q ss_pred cceeEEEeCCeEEEEeecCCCCCC-cc-eEEEeeCCe------eee-ee---e-e----ccCCcEEE-----ccCCcEEE
Q psy9140 14 TGNTFVLRGNIAVLQCNIPAYNHN-LL-LIAWLREGV------SEA-RS---I-I----HSGGRYSI-----TTAGALHI 71 (114)
Q Consensus 14 ~~d~~v~~G~~AvL~C~~~~~~~~-~~-~vsW~kd~~------~~~-~~---~-~----~~~~r~~v-----~~~G~L~I 71 (114)
+.+..+..|.+|.|+|...+.... .. .|.|.+... .++ +. . . .-.+|... ..+++|.|
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I 84 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI 84 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence 456789999999999998543211 23 899944211 011 00 0 0 11247764 23568999
Q ss_pred eecCCCCCCeeeEEEEeeccCC
Q psy9140 72 RDTGMEDSYIRYYCQTTHKLTG 93 (114)
Q Consensus 72 ~~v~~~D~gg~Y~C~a~n~l~~ 93 (114)
+|++.+|+| .|+|.+.|..+.
T Consensus 85 ~nv~~sD~G-~Y~C~v~n~p~~ 105 (116)
T cd05879 85 HNLDYTDNG-TFTCDVKNPPDI 105 (116)
T ss_pred ccCCcccCE-EEEEEEEcCCCc
Confidence 999999995 999999998764
No 113
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=99.12 E-value=2.8e-10 Score=72.71 Aligned_cols=66 Identities=24% Similarity=0.246 Sum_probs=50.8
Q ss_pred CCeEEEEeecCCCCCCcc-eEEEeeCCeeeeee-------------eeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140 22 GNIAVLQCNIPAYNHNLL-LIAWLREGVSEARS-------------IIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT 87 (114)
Q Consensus 22 G~~AvL~C~~~~~~~~~~-~vsW~kd~~~~~~~-------------~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a 87 (114)
|.+|+|+|...+ . .. .+.|.|.+...... ...-.+|+.+..+|+|.|+|++.+|+| .|+|.+
T Consensus 1 G~~VtL~c~~~~--~-~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG-~Y~c~v 76 (92)
T cd05741 1 GESVTLPVSNLP--E-NLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSG-TYTLQI 76 (92)
T ss_pred CCcEEEEcccCC--C-CCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcE-EEEEEE
Confidence 889999998854 2 23 89999987543100 012257899999999999999999995 999999
Q ss_pred eecc
Q psy9140 88 THKL 91 (114)
Q Consensus 88 ~n~l 91 (114)
.+.-
T Consensus 77 ~~~~ 80 (92)
T cd05741 77 ISTN 80 (92)
T ss_pred EcCC
Confidence 9874
No 114
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.10 E-value=3.6e-10 Score=85.16 Aligned_cols=91 Identities=14% Similarity=0.129 Sum_probs=61.5
Q ss_pred eccceeEEEeCCeEEEEeecCCCCCC--------cc-eEEEeeCCeeeeeeeeccCC----------cEEEccCCcEEEe
Q psy9140 12 INTGNTFVLRGNIAVLQCNIPAYNHN--------LL-LIAWLREGVSEARSIIHSGG----------RYSITTAGALHIR 72 (114)
Q Consensus 12 v~~~d~~v~~G~~AvL~C~~~~~~~~--------~~-~vsW~kd~~~~~~~~~~~~~----------r~~v~~~G~L~I~ 72 (114)
.+.+...|.+|++|+|+|.+.+++++ .- .+.|.|++..... -..+. |+ -..++.|.|.
T Consensus 27 ~~~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v--~~~~~~~~~~~i~~~~~-~~r~~~L~I~ 103 (227)
T PHA02826 27 GDLTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFV--RDSGARTKIKKITHNEI-GDRSENLWIG 103 (227)
T ss_pred cCcceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEE--EcCCCccccccccccce-ecCCCeEEEC
Confidence 44567789999999999997543321 11 8999999753211 01111 21 1236799999
Q ss_pred ecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEeccc
Q psy9140 73 DTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIA 109 (114)
Q Consensus 73 ~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~ 109 (114)
+++.+|+| .|+|+|.|..+. .....+|.|.+++
T Consensus 104 ~v~~~DsG-~Y~C~a~N~~~~---~~~~i~L~V~~~~ 136 (227)
T PHA02826 104 NVINIDEG-IYICTISSGNIC---EESTIRLTFDSGT 136 (227)
T ss_pred CCChHHCE-EEEEEEEECCcc---eEEEEEEEEecCC
Confidence 99999995 999999997643 3345677776543
No 115
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.09 E-value=3.1e-10 Score=74.91 Aligned_cols=71 Identities=21% Similarity=0.320 Sum_probs=49.7
Q ss_pred EEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeee---------eeeccCCcEEEcc----CC--cEEEeecCCCCCCee
Q psy9140 18 FVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEAR---------SIIHSGGRYSITT----AG--ALHIRDTGMEDSYIR 82 (114)
Q Consensus 18 ~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~---------~~~~~~~r~~v~~----~G--~L~I~~v~~~D~gg~ 82 (114)
.+.+|++|.|+|.+.+...+ .+.|.+++...++ ......+||.+.. +| .|.|++++.+|+| +
T Consensus 3 ~~~~G~~VtL~C~~s~~~~~--~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsg-t 79 (94)
T cd07690 3 LGKKGDTAELPCTASQKKSI--QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSD-T 79 (94)
T ss_pred EeeCCCCEEEEEEeCCCCCc--EEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCE-E
Confidence 56789999999998654333 8999977643211 0112234554432 44 4999999999995 9
Q ss_pred eEEEEeecc
Q psy9140 83 YYCQTTHKL 91 (114)
Q Consensus 83 Y~C~a~n~l 91 (114)
|.|.+.|+.
T Consensus 80 Y~C~v~~~~ 88 (94)
T cd07690 80 YICEVEDKK 88 (94)
T ss_pred EEEEECCcc
Confidence 999999975
No 116
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.08 E-value=5.3e-10 Score=74.06 Aligned_cols=73 Identities=19% Similarity=0.350 Sum_probs=53.3
Q ss_pred eEEEeCCeEEEEeec-CCCCCCcc--eEEEeeCCeeeeeeeeccCCcEEEcc-CCcEEEeecCCCCCCeeeEEEEeeccC
Q psy9140 17 TFVLRGNIAVLQCNI-PAYNHNLL--LIAWLREGVSEARSIIHSGGRYSITT-AGALHIRDTGMEDSYIRYYCQTTHKLT 92 (114)
Q Consensus 17 ~~v~~G~~AvL~C~~-~~~~~~~~--~vsW~kd~~~~~~~~~~~~~r~~v~~-~G~L~I~~v~~~D~gg~Y~C~a~n~l~ 92 (114)
+.+..|....|.|.- ..|-++.. .+.|+||+..+ ...+.||.... ++.|.|.+|+.+|+| .|+|.|.+..+
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l----~~~~~~~~~~~~~~~L~I~~v~~~D~G-~YtC~~~~~~~ 79 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLL----DKDNEKFYSLKGSTYLHIIDVSLNDSG-YYTCKLQFTHE 79 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEEC----cCCCcceEecCCCCEEEEEEcChhhCE-EEEEEEEEeeC
Confidence 467789999999962 23311111 89999999853 22345677643 458999999999995 99999999876
Q ss_pred Cc
Q psy9140 93 GE 94 (114)
Q Consensus 93 ~~ 94 (114)
|.
T Consensus 80 g~ 81 (95)
T cd05897 80 GK 81 (95)
T ss_pred CE
Confidence 54
No 117
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=99.08 E-value=1.8e-09 Score=71.78 Aligned_cols=91 Identities=22% Similarity=0.328 Sum_probs=61.3
Q ss_pred eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCe--e---eeeee--------eccCCcEEEccC----CcEEEee
Q psy9140 11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGV--S---EARSI--------IHSGGRYSITTA----GALHIRD 73 (114)
Q Consensus 11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~--~---~~~~~--------~~~~~r~~v~~~----G~L~I~~ 73 (114)
...|....|.+|.+|.|.|.+.. ..+ .+.|+|... . |+... ....+||.+..+ -.|.|++
T Consensus 2 ~Q~p~~~~v~~G~~v~l~C~~~~-~~~--~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~ 78 (110)
T cd05899 2 TQSPRYLIKGRGQSVTLRCSQTS-GHD--NMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKS 78 (110)
T ss_pred EECCCceEEcCCCcEEEEEEECC-CCC--EEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECC
Confidence 35678889999999999999865 222 799999643 1 11100 112578887432 3699999
Q ss_pred cCCCCCCeeeEEEEeeccC-CcEEeCCCeEEEE
Q psy9140 74 TGMEDSYIRYYCQTTHKLT-GERKISPPSQVMV 105 (114)
Q Consensus 74 v~~~D~gg~Y~C~a~n~l~-~~~~~s~~a~L~V 105 (114)
++.+|+| .|.|.+.+.-+ ....-+..++|.|
T Consensus 79 ~~~~Dsg-~Y~Ca~~~~~~~~~~~fg~gT~L~V 110 (110)
T cd05899 79 AEPEDSA-VYLCASSLGGGADEAYFGPGTRLTV 110 (110)
T ss_pred CChhhCE-EEEEEeeCCCCccceEECCCEEEeC
Confidence 9999995 99999987521 2233455666654
No 118
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=99.05 E-value=5.8e-10 Score=72.31 Aligned_cols=89 Identities=19% Similarity=0.209 Sum_probs=60.6
Q ss_pred cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140 8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT 87 (114)
Q Consensus 8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a 87 (114)
+.+.++| ...|.+|.+++|+|..+.. .....|+|+|.... ..... .-...+.|.|.+|+.+|+| .|+|.+
T Consensus 3 P~L~a~p-~~vV~~G~~VtL~C~~~~~---~~~f~l~k~g~~~~---~~~~~--~~~~~~~f~i~~v~~~~~G-~Y~C~~ 72 (91)
T cd05751 3 PSLWAEP-SSVVPLGKPVTLRCQGPYG---AVEYRLYREGSTFA---VKKPP--EPQNKAKFFIPSMKREHAG-RYRCYY 72 (91)
T ss_pred CEEEecC-CCccCCCCcEEEEEecCCC---CCEEEEEECCCCcc---ccccC--CCceeEEEEccCCChhHCE-EEEEEE
Confidence 3456667 4678999999999998531 11789999987421 11000 0112568999999999995 999999
Q ss_pred eeccCCcEEeCCCeEEEEe
Q psy9140 88 THKLTGERKISPPSQVMVS 106 (114)
Q Consensus 88 ~n~l~~~~~~s~~a~L~V~ 106 (114)
.|....-...|.+..|.|+
T Consensus 73 ~~~~~~~S~~Sd~lel~Vt 91 (91)
T cd05751 73 RSGVALWSEPSDPLELVVT 91 (91)
T ss_pred ECCCCccCCCCCcEEEEeC
Confidence 9864222345667888774
No 119
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=99.04 E-value=2.2e-09 Score=70.93 Aligned_cols=92 Identities=18% Similarity=0.257 Sum_probs=62.5
Q ss_pred eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC-----eeeeeee----eccCCcEEEccCC---cEEEeecCCC
Q psy9140 10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG-----VSEARSI----IHSGGRYSITTAG---ALHIRDTGME 77 (114)
Q Consensus 10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~-----~~~~~~~----~~~~~r~~v~~~G---~L~I~~v~~~ 77 (114)
....|....+.+|++|.|.|.+....... .+.|+|.. ..+++.. ....+||.+..++ .|.|++++.+
T Consensus 3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~-~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~ 81 (106)
T cd04980 3 LTQSPATLSVSPGESATISCKASQSVSSN-YLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPE 81 (106)
T ss_pred EEECCCcEEECCCCCEEEEEEECCCCCCC-cEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChH
Confidence 34568888999999999999986543111 68999853 1122111 1123689886443 5999999999
Q ss_pred CCCeeeEEEEeeccCCcEEeCCCeEEEE
Q psy9140 78 DSYIRYYCQTTHKLTGERKISPPSQVMV 105 (114)
Q Consensus 78 D~gg~Y~C~a~n~l~~~~~~s~~a~L~V 105 (114)
|+| .|.|.+.+. ....-+..++|.|
T Consensus 82 Dsg-~Y~Ca~~~~--~~~~fg~gT~L~v 106 (106)
T cd04980 82 DAA-VYYCQQYGT--FPYTFGGGTKLEI 106 (106)
T ss_pred HCE-EEEEEEeCC--CCCEECCCEEEeC
Confidence 995 999999864 2334566666654
No 120
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=99.04 E-value=1.6e-09 Score=70.57 Aligned_cols=69 Identities=22% Similarity=0.266 Sum_probs=46.0
Q ss_pred CCeEEEEeecCCCCCCcc-eEEEeeCCeee-e--eee---e------ccCCcEEEcc------CCcEEEeecCCCCCCee
Q psy9140 22 GNIAVLQCNIPAYNHNLL-LIAWLREGVSE-A--RSI---I------HSGGRYSITT------AGALHIRDTGMEDSYIR 82 (114)
Q Consensus 22 G~~AvL~C~~~~~~~~~~-~vsW~kd~~~~-~--~~~---~------~~~~r~~v~~------~G~L~I~~v~~~D~gg~ 82 (114)
|.+|.|+|...+...... .+.|+|..... + +.. . .-.+|+.+.. +.+|.|++|+.+|+| .
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G-~ 79 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEG-L 79 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCE-E
Confidence 789999999853322223 78999975311 1 100 0 0125877632 247999999999995 9
Q ss_pred eEEEEeecc
Q psy9140 83 YYCQTTHKL 91 (114)
Q Consensus 83 Y~C~a~n~l 91 (114)
|+|.+.|.-
T Consensus 80 Y~C~v~~~~ 88 (100)
T cd05713 80 YTCFFQSDG 88 (100)
T ss_pred EEEEEecCC
Confidence 999999853
No 121
>KOG4194|consensus
Probab=99.04 E-value=4.2e-10 Score=94.90 Aligned_cols=104 Identities=17% Similarity=0.260 Sum_probs=79.8
Q ss_pred ccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEc-----------cCCcEEEeecC
Q psy9140 7 SSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSIT-----------TAGALHIRDTG 75 (114)
Q Consensus 7 ~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~-----------~~G~L~I~~v~ 75 (114)
.++.+.+|++..++.|..+.|.|.+-++.+.+..+.|.||.+....+.....-+|.-. -.+.|++.||+
T Consensus 503 kpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt 582 (873)
T KOG4194|consen 503 KPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVT 582 (873)
T ss_pred CcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeee
Confidence 4668899999999999999999999554444449999999885422222222333221 14669999999
Q ss_pred CCCCCeeeEEEEeeccCCcEEeCCCeEEEEeccccccc
Q psy9140 76 MEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIALPLK 113 (114)
Q Consensus 76 ~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~~~~~ 113 (114)
.+|+| .|.|+++|.++. .+|..++|.|...+.+.+
T Consensus 583 ~td~g-rYQCVvtN~FGS--tysqk~KltV~~~PsFtk 617 (873)
T KOG4194|consen 583 FTDEG-RYQCVVTNHFGS--TYSQKAKLTVNQAPSFTK 617 (873)
T ss_pred cccCc-eEEEEEecccCc--chhheeEEEeeccCcccc
Confidence 99996 999999999987 488899999998887664
No 122
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.01 E-value=1.9e-09 Score=70.12 Aligned_cols=86 Identities=23% Similarity=0.254 Sum_probs=57.7
Q ss_pred EEEeCCeEEEEeecCCCCCCcceEEEeeCCe-----eeeeee-------eccCCcEEEccCC-----cEEEeecCCCCCC
Q psy9140 18 FVLRGNIAVLQCNIPAYNHNLLLIAWLREGV-----SEARSI-------IHSGGRYSITTAG-----ALHIRDTGMEDSY 80 (114)
Q Consensus 18 ~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~-----~~~~~~-------~~~~~r~~v~~~G-----~L~I~~v~~~D~g 80 (114)
.|.+|++|.|.|.+...... ..+.|+|... .++... ....+|+.+..++ .|.|+|++.+|+|
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~-~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G 80 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSS-YYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSA 80 (105)
T ss_pred eecCCCCEEEEEEEeCCcCc-ceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCE
Confidence 47799999999998653111 2889999543 111100 1235788875432 7999999999995
Q ss_pred eeeEEEEeeccC-CcEEeCCCeEEEE
Q psy9140 81 IRYYCQTTHKLT-GERKISPPSQVMV 105 (114)
Q Consensus 81 g~Y~C~a~n~l~-~~~~~s~~a~L~V 105 (114)
.|.|.+.+... .....+..++|.|
T Consensus 81 -~Y~C~v~~~~~~~~~~~~~gt~l~v 105 (105)
T cd00099 81 -VYYCAVSLSGGTYKLYFGQGTRLTV 105 (105)
T ss_pred -EEEEEEecCCCceeeEECCCEEEeC
Confidence 99999998642 1334466777765
No 123
>KOG4222|consensus
Probab=99.00 E-value=5.7e-10 Score=98.39 Aligned_cols=96 Identities=20% Similarity=0.275 Sum_probs=83.5
Q ss_pred cccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccC-CcEEEeecCCCCCCeeeE
Q psy9140 6 MSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTA-GALHIRDTGMEDSYIRYY 84 (114)
Q Consensus 6 v~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~-G~L~I~~v~~~D~gg~Y~ 84 (114)
..|.|..+|.|..|..|..|.|+|.+.+.+.+ .+.|.|++.. ..-.||.|+-+ -+|.|.+++..|+| .|.
T Consensus 224 e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P--~Vrwkk~~~~------~P~~ry~i~~d~qtl~i~r~tp~deg-~y~ 294 (1281)
T KOG4222|consen 224 EKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQP--TVRWKKDDPS------LPRSRYSILDDTQTLRIDRVTPTDEG-TYV 294 (1281)
T ss_pred cCCccccccccceeecccccccccccCCCCCC--ceeeeccCCC------CCccceeeeeccccccccccCCCccc-cee
Confidence 34679999999999999999999999886555 8899998764 34679998765 79999999999996 999
Q ss_pred EEEeeccCCcEEeCCCeEEEEeccccccc
Q psy9140 85 CQTTHKLTGERKISPPSQVMVSEIALPLK 113 (114)
Q Consensus 85 C~a~n~l~~~~~~s~~a~L~V~~~~~~~~ 113 (114)
|.|.|.+++ ++..|.|+|+.|..+.+
T Consensus 295 C~a~n~vG~---l~asa~ltV~apP~f~k 320 (1281)
T KOG4222|consen 295 CPAENLVGG---LEASATLTVQAPPSFGK 320 (1281)
T ss_pred eeccccccc---cccccceEEecCccccc
Confidence 999999987 78999999999987764
No 124
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.99 E-value=2.8e-09 Score=70.26 Aligned_cols=82 Identities=21% Similarity=0.249 Sum_probs=52.9
Q ss_pred eCCeEEEEeecCCCC---CCcc-eEEEeeCCe-----eeeeee--------eccCCcEEEcc----CCcEEEeecCCCCC
Q psy9140 21 RGNIAVLQCNIPAYN---HNLL-LIAWLREGV-----SEARSI--------IHSGGRYSITT----AGALHIRDTGMEDS 79 (114)
Q Consensus 21 ~G~~AvL~C~~~~~~---~~~~-~vsW~kd~~-----~~~~~~--------~~~~~r~~v~~----~G~L~I~~v~~~D~ 79 (114)
+|.+|.|+|.....+ .... .|.|+|.+. .+++.. ..-.+|+.+.. +.+|+|++++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 599999999874331 1223 799999752 111100 01146888753 34799999999999
Q ss_pred CeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140 80 YIRYYCQTTHKLTGERKISPPSQVMVS 106 (114)
Q Consensus 80 gg~Y~C~a~n~l~~~~~~s~~a~L~V~ 106 (114)
|.|+|.+.+.... ......|.|+
T Consensus 81 -G~Y~C~v~~~~~~---~~~~~~l~v~ 103 (106)
T cd05877 81 -GRYRCEVIDGLED---ESVVVALRLR 103 (106)
T ss_pred -EEEEEEEEecccc---eEEEEEEEEE
Confidence 4999999986543 2334455554
No 125
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.98 E-value=3.2e-09 Score=68.88 Aligned_cols=89 Identities=21% Similarity=0.388 Sum_probs=60.7
Q ss_pred eccceeEEEeCCeEEEEeecCCCCCCcc-eEEEeeCCe-----eeee---------eeeccCCcEEEccCCc-----EEE
Q psy9140 12 INTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGV-----SEAR---------SIIHSGGRYSITTAGA-----LHI 71 (114)
Q Consensus 12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd~~-----~~~~---------~~~~~~~r~~v~~~G~-----L~I 71 (114)
..|....+.+|.+|.|.|... . .... .+.|.+.+. .++. ....-.+|+.+..++. |.|
T Consensus 6 ~~~~~v~~~~G~~v~L~C~~~-~-~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i 83 (114)
T PF07686_consen 6 QPPSPVTVQEGESVTLPCSYS-S-SSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTI 83 (114)
T ss_dssp EEESEEEEETTSEEEEEEEEE-S-SSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEE
T ss_pred EeCCeEEEecCCCEEEEEEEe-C-CCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEE
Confidence 347777899999999999986 2 1233 899999543 1110 0112256777766555 999
Q ss_pred eecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEE
Q psy9140 72 RDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMV 105 (114)
Q Consensus 72 ~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V 105 (114)
.|++.+|+| .|.|.+... +........+|.|
T Consensus 84 ~~l~~~DsG-~Y~C~v~~~--~~~~~~~~~~L~V 114 (114)
T PF07686_consen 84 KNLQPSDSG-TYFCQVSTS--NEQSFGNGTKLTV 114 (114)
T ss_dssp SSESGGGEE-EEEEEEEES--SEEEEEEEEEEEE
T ss_pred CCCCcCcCE-EEEEEEEEC--CCCEECCcEEEEC
Confidence 999999995 999999986 3323333555554
No 126
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.98 E-value=1.9e-09 Score=70.75 Aligned_cols=69 Identities=22% Similarity=0.240 Sum_probs=50.1
Q ss_pred EeCCeEEEEeecCCCCCCcc-eEEEeeCCeeeeeeee--------cc----CCcEEEcc-CCcEEEeecCCCCCCeeeEE
Q psy9140 20 LRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARSII--------HS----GGRYSITT-AGALHIRDTGMEDSYIRYYC 85 (114)
Q Consensus 20 ~~G~~AvL~C~~~~~~~~~~-~vsW~kd~~~~~~~~~--------~~----~~r~~v~~-~G~L~I~~v~~~D~gg~Y~C 85 (114)
+.|++|.|+|..+. .... .+.|.|....++.... .. .+|+.+.+ +++|.|+|++.+|+| .|.|
T Consensus 2 ~~G~sVtL~c~~~~--~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG-~Y~c 78 (97)
T cd05775 2 ILGGSVTLPLNIPD--GTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAG-SYRA 78 (97)
T ss_pred ccCCeEEEeCCCCC--CcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCE-EEEE
Confidence 47999999998843 1223 8999997544331110 01 25777876 489999999999995 9999
Q ss_pred EEeecc
Q psy9140 86 QTTHKL 91 (114)
Q Consensus 86 ~a~n~l 91 (114)
.+.+.-
T Consensus 79 ~v~~~~ 84 (97)
T cd05775 79 EINTKN 84 (97)
T ss_pred EEEcCC
Confidence 999875
No 127
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.95 E-value=4.2e-09 Score=71.03 Aligned_cols=79 Identities=19% Similarity=0.357 Sum_probs=55.6
Q ss_pred eeeccceeEEEeCCeEEEEeecCC-CC-------CCcc-eEEEeeCCeeeeeeee--ccCCcEEEccCCcEEEeecCCCC
Q psy9140 10 YEINTGNTFVLRGNIAVLQCNIPA-YN-------HNLL-LIAWLREGVSEARSII--HSGGRYSITTAGALHIRDTGMED 78 (114)
Q Consensus 10 ~~v~~~d~~v~~G~~AvL~C~~~~-~~-------~~~~-~vsW~kd~~~~~~~~~--~~~~r~~v~~~G~L~I~~v~~~D 78 (114)
+.++-+...+.+|+.+.|+|.... +. +... .+.|.|++..+..+.. ..+.|.+.. .+.|.|..+..+|
T Consensus 3 ~~~~~~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~-~~~Lwf~Pa~~eD 81 (104)
T cd05896 3 WSVDLKKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKE-EDSIWFRPAELQD 81 (104)
T ss_pred cccceeeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEe-CCEEEEEeCChhh
Confidence 344556678999999999998622 11 2223 7899999754321111 112477665 6899999999999
Q ss_pred CCeeeEEEEeec
Q psy9140 79 SYIRYYCQTTHK 90 (114)
Q Consensus 79 ~gg~Y~C~a~n~ 90 (114)
+| .|+|++.|.
T Consensus 82 SG-~Y~C~~rN~ 92 (104)
T cd05896 82 SG-LYTCVLRNS 92 (104)
T ss_pred Ce-EEEEEECCC
Confidence 95 999999996
No 128
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.95 E-value=5.1e-09 Score=69.09 Aligned_cols=82 Identities=20% Similarity=0.253 Sum_probs=51.6
Q ss_pred eCCeEEEEeecCCCC---CCcc-eEEEeeCC-----eeeeeee------e--ccCCcEEEc----cCCcEEEeecCCCCC
Q psy9140 21 RGNIAVLQCNIPAYN---HNLL-LIAWLREG-----VSEARSI------I--HSGGRYSIT----TAGALHIRDTGMEDS 79 (114)
Q Consensus 21 ~G~~AvL~C~~~~~~---~~~~-~vsW~kd~-----~~~~~~~------~--~~~~r~~v~----~~G~L~I~~v~~~D~ 79 (114)
+|++|.|+|...... .... .|.|.|.. ...++.. . .-.+|+... .+.+|+|++++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 599999999985432 1123 89999972 1111100 0 011244331 256899999999999
Q ss_pred CeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140 80 YIRYYCQTTHKLTGERKISPPSQVMVS 106 (114)
Q Consensus 80 gg~Y~C~a~n~l~~~~~~s~~a~L~V~ 106 (114)
| .|+|.+.+.... .+...+|.|+
T Consensus 81 G-~Y~C~v~~~~~~---~~~~v~L~V~ 103 (106)
T cd05714 81 G-RYRCEVIDGIED---EQDTVELEVR 103 (106)
T ss_pred E-EEEEEEEcCCCc---eEEEEEEEEE
Confidence 5 999999986332 3446667665
No 129
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.92 E-value=1.2e-08 Score=65.96 Aligned_cols=80 Identities=18% Similarity=0.306 Sum_probs=49.4
Q ss_pred CeEEEEeecCCCCCCcc-eEEEeeCCee---ee-eee--------eccCCcEEEcc----CCcEEEeecCCCCCCeeeEE
Q psy9140 23 NIAVLQCNIPAYNHNLL-LIAWLREGVS---EA-RSI--------IHSGGRYSITT----AGALHIRDTGMEDSYIRYYC 85 (114)
Q Consensus 23 ~~AvL~C~~~~~~~~~~-~vsW~kd~~~---~~-~~~--------~~~~~r~~v~~----~G~L~I~~v~~~D~gg~Y~C 85 (114)
++|.|+|.......... .|.|+|.+.. .+ ... ....+|..+.. +.+|+|++|+.+|+| .|.|
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G-~Y~C 79 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEG-NYIC 79 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCE-EEEE
Confidence 46899999855332234 8999997641 11 000 01134555442 569999999999995 9999
Q ss_pred EEeeccCCcEEeCCCeEEEE
Q psy9140 86 QTTHKLTGERKISPPSQVMV 105 (114)
Q Consensus 86 ~a~n~l~~~~~~s~~a~L~V 105 (114)
.+.+...|. ......|.|
T Consensus 80 ~v~~~~~g~--~~~~~~l~V 97 (98)
T cd05718 80 EFATFPQGN--RQKVTTLTV 97 (98)
T ss_pred EEEeCCCCc--EEEEEEEEe
Confidence 998643332 233444444
No 130
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.89 E-value=1.8e-08 Score=68.18 Aligned_cols=78 Identities=17% Similarity=0.216 Sum_probs=50.2
Q ss_pred cceeEEEeCCeEEEEeecCCCCC-Ccc-eEEEeeC----Cee-eee-ee----eccC----CcEEEc-----cCCcEEEe
Q psy9140 14 TGNTFVLRGNIAVLQCNIPAYNH-NLL-LIAWLRE----GVS-EAR-SI----IHSG----GRYSIT-----TAGALHIR 72 (114)
Q Consensus 14 ~~d~~v~~G~~AvL~C~~~~~~~-~~~-~vsW~kd----~~~-~~~-~~----~~~~----~r~~v~-----~~G~L~I~ 72 (114)
|....+.+|.+|.|.|......+ ... .|.|.+- +.. .++ .. ...+ +|+... .+.+|+|+
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 56778999999999999732211 112 6999641 221 111 00 1123 344332 24579999
Q ss_pred ecCCCCCCeeeEEEEeeccC
Q psy9140 73 DTGMEDSYIRYYCQTTHKLT 92 (114)
Q Consensus 73 ~v~~~D~gg~Y~C~a~n~l~ 92 (114)
+++.+|+| .|+|.+.|.-+
T Consensus 85 ~v~~~D~G-~Y~C~v~~~~~ 103 (115)
T cd05880 85 QLQPTDNG-TYTCQVKNPPD 103 (115)
T ss_pred eCChhhCE-EEEEEEEeCCC
Confidence 99999995 99999999765
No 131
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.88 E-value=2.1e-08 Score=68.12 Aligned_cols=82 Identities=21% Similarity=0.238 Sum_probs=52.6
Q ss_pred eCCeEEEEeecCCCCC---------Ccc-eEEEeeCCe---eeeeeee--------ccCCcEEEcc------CCcEEEee
Q psy9140 21 RGNIAVLQCNIPAYNH---------NLL-LIAWLREGV---SEARSII--------HSGGRYSITT------AGALHIRD 73 (114)
Q Consensus 21 ~G~~AvL~C~~~~~~~---------~~~-~vsW~kd~~---~~~~~~~--------~~~~r~~v~~------~G~L~I~~ 73 (114)
.|+++.|+|....... +.. .|.|.|-.. ..+.... .-.+|+.+.. +.+|.|+|
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 4899999999843221 113 899998421 1111000 1125888842 56899999
Q ss_pred cCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140 74 TGMEDSYIRYYCQTTHKLTGERKISPPSQVMVS 106 (114)
Q Consensus 74 v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~ 106 (114)
++.+|+ |+|+|.+.+.+..+ +....|.|+
T Consensus 81 l~~sDs-G~Y~C~V~~g~~~~---~~~v~l~v~ 109 (112)
T cd05900 81 LRSNDS-GTYRCEVMHGIEDN---YDTVEVQVK 109 (112)
T ss_pred cccccC-EEEEEEEecCCCCc---eeEEEEEEE
Confidence 999999 49999999876542 334455544
No 132
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.87 E-value=3.2e-08 Score=66.55 Aligned_cols=79 Identities=14% Similarity=0.220 Sum_probs=51.5
Q ss_pred ccceeEEEeCCeEEEEeecCCCCC-Ccc-eEEEeeCCe------eee-eee----eccCC----cEEEcc-----CCcEE
Q psy9140 13 NTGNTFVLRGNIAVLQCNIPAYNH-NLL-LIAWLREGV------SEA-RSI----IHSGG----RYSITT-----AGALH 70 (114)
Q Consensus 13 ~~~d~~v~~G~~AvL~C~~~~~~~-~~~-~vsW~kd~~------~~~-~~~----~~~~~----r~~v~~-----~G~L~ 70 (114)
.|....+.+|.+|.|.|....... ... .+.|++... .++ +.. ....+ |+.+.. +.+|+
T Consensus 4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 83 (116)
T cd05715 4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV 83 (116)
T ss_pred cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence 477889999999999998743221 122 699976432 111 100 01233 444422 24699
Q ss_pred EeecCCCCCCeeeEEEEeeccC
Q psy9140 71 IRDTGMEDSYIRYYCQTTHKLT 92 (114)
Q Consensus 71 I~~v~~~D~gg~Y~C~a~n~l~ 92 (114)
|++++.+|+| .|.|.+.|.-+
T Consensus 84 I~~v~~~D~G-~Y~C~v~~~~~ 104 (116)
T cd05715 84 IHNLQFTDNG-TYTCDVKNPPD 104 (116)
T ss_pred EeeCCcccCE-EEEEEEEeCCC
Confidence 9999999995 99999998744
No 133
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.86 E-value=1.4e-08 Score=65.31 Aligned_cols=65 Identities=15% Similarity=0.263 Sum_probs=46.2
Q ss_pred EEEEeecCCCCCCcceEEEeeCCeeeeee--eeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCC
Q psy9140 25 AVLQCNIPAYNHNLLLIAWLREGVSEARS--IIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTG 93 (114)
Q Consensus 25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~--~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~ 93 (114)
+.|.|...+. .|+..++|+||+..|... ....+.+|.+ .++|.+.-+..+|. +.|+|.|.|....
T Consensus 2 ~~L~C~s~~s-kP~a~i~W~k~~~~l~~~~~~~~~~~~~t~--~s~L~~~~~~~Ddg-~~~~C~A~n~a~~ 68 (80)
T cd05885 2 VELTCLSPRS-KPAATLRWYRDRKELKGVISQQENGKTVSV--SNTIRFPVDRKDDG-AILSCEASHPALV 68 (80)
T ss_pred EEEEEeCCCc-cCCCeEEEEECCEECCCCcccccCCceEEE--EEEEEEEeeeccCC-cEEEEEEEChhhC
Confidence 6799998654 232399999999987311 1123455664 58899987777776 5999999998654
No 134
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.85 E-value=2.2e-08 Score=67.28 Aligned_cols=70 Identities=20% Similarity=0.224 Sum_probs=46.8
Q ss_pred eCCeEEEEeecCCCCCC-------cc-eEEEeeCC--eee-eee--------eeccCCcEEEc------cCCcEEEeecC
Q psy9140 21 RGNIAVLQCNIPAYNHN-------LL-LIAWLREG--VSE-ARS--------IIHSGGRYSIT------TAGALHIRDTG 75 (114)
Q Consensus 21 ~G~~AvL~C~~~~~~~~-------~~-~vsW~kd~--~~~-~~~--------~~~~~~r~~v~------~~G~L~I~~v~ 75 (114)
.|.+|+|+|.......+ .. .|.|+|.. ... +.. ...-.+|+.+. .+.+|.|+|++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 48999999998543321 12 89999962 221 110 00113688773 23569999999
Q ss_pred CCCCCeeeEEEEeecc
Q psy9140 76 MEDSYIRYYCQTTHKL 91 (114)
Q Consensus 76 ~~D~gg~Y~C~a~n~l 91 (114)
.+|+| .|.|.+.+..
T Consensus 81 ~sD~G-~Y~C~v~~~~ 95 (110)
T cd05878 81 SSDSG-VYRCEVMHGI 95 (110)
T ss_pred hhhCE-EEEEEEEeCC
Confidence 99995 9999999853
No 135
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.84 E-value=2.8e-08 Score=66.40 Aligned_cols=78 Identities=15% Similarity=0.256 Sum_probs=53.0
Q ss_pred eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--ee---eeeee---------eccCCcEEEccC-----CcEEEe
Q psy9140 12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VS---EARSI---------IHSGGRYSITTA-----GALHIR 72 (114)
Q Consensus 12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~---~~~~~---------~~~~~r~~v~~~-----G~L~I~ 72 (114)
..|....+.+|++|.|.|.+.....+...+.|+|.. .. |+... ....+||.+..+ ..|.|.
T Consensus 3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~ 82 (116)
T cd04982 3 QPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQ 82 (116)
T ss_pred CcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEE
Confidence 356677888999999999985421111179999952 21 11110 012579987533 369999
Q ss_pred ecCCCCCCeeeEEEEeec
Q psy9140 73 DTGMEDSYIRYYCQTTHK 90 (114)
Q Consensus 73 ~v~~~D~gg~Y~C~a~n~ 90 (114)
+++.+|+| .|.|.+...
T Consensus 83 ~~~~~Dsg-~Y~C~~~~~ 99 (116)
T cd04982 83 NLEKEDSA-TYYCAYWES 99 (116)
T ss_pred ECCHHHCE-EEEEEEecC
Confidence 99999995 999999753
No 136
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.83 E-value=5.1e-09 Score=63.13 Aligned_cols=71 Identities=18% Similarity=0.307 Sum_probs=46.8
Q ss_pred eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEee
Q psy9140 11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTH 89 (114)
Q Consensus 11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n 89 (114)
.+.+.......|+ +.|.|.+.+...+ ..++|+ +... ......+.....++.|.|++|..+|.| .|+|+|.|
T Consensus 5 ~~~~~~~~~~~~~-~~l~C~~~~~~~~-~~~~W~-~~~~----~~~~~~~~~~~~~~~L~i~~v~~~~~g-~y~C~a~N 75 (75)
T PF13927_consen 5 SVPPPPVVTSGGS-VTLTCSAEGGPPP-PSISWY-DSNP----SFNSNSRGSSSSNSTLTISNVTRSDNG-TYTCIASN 75 (75)
T ss_dssp EEESTSEEETTEE-EEEEEEESSEESS-EEEEEE-TEEE----EEEEEEEEEEEEEEEEEESSCCGGGTE-EEEEEEEE
T ss_pred EEcCCCcEeecee-EEEEEEEccccCC-eEEEEE-ecCC----ceeeeeeeccceeeEEEEccCCHHhCc-EEEEEEEC
Confidence 3444444444444 9999999775432 289999 2111 112223333344689999999999995 99999987
No 137
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.82 E-value=3.8e-08 Score=64.28 Aligned_cols=80 Identities=23% Similarity=0.230 Sum_probs=52.7
Q ss_pred CCeEEEEeecCCCCCCcc-eEEEeeCCe----eeeeee--------eccCCcEEEc----cCCcEEEeecCCCCCCeeeE
Q psy9140 22 GNIAVLQCNIPAYNHNLL-LIAWLREGV----SEARSI--------IHSGGRYSIT----TAGALHIRDTGMEDSYIRYY 84 (114)
Q Consensus 22 G~~AvL~C~~~~~~~~~~-~vsW~kd~~----~~~~~~--------~~~~~r~~v~----~~G~L~I~~v~~~D~gg~Y~ 84 (114)
|++|.|.|..... ... .+.|+|... .++... ..-.+|+.+. .+.+|.|+||+.+|+| .|+
T Consensus 1 G~~vtL~C~~~~~--~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G-~Y~ 77 (97)
T cd05846 1 GGNVTLSCNLTLP--EEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEG-CYK 77 (97)
T ss_pred CCcEEEEEEeCCC--CeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeE-EEE
Confidence 8899999986432 223 799998542 111000 0113455552 2457999999999995 999
Q ss_pred EEEeeccCCcEEeCCCeEEEEe
Q psy9140 85 CQTTHKLTGERKISPPSQVMVS 106 (114)
Q Consensus 85 C~a~n~l~~~~~~s~~a~L~V~ 106 (114)
|...+...+. .+..+.|.|.
T Consensus 78 C~~~~~p~g~--~~~~~~L~v~ 97 (97)
T cd05846 78 CIFNTFPDGS--KSGTMCLTVY 97 (97)
T ss_pred EEEEeCCCCC--eeeEEEEEEC
Confidence 9999876664 5556777763
No 138
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.82 E-value=4.7e-08 Score=65.51 Aligned_cols=94 Identities=22% Similarity=0.295 Sum_probs=62.8
Q ss_pred eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--eeeeee-------eeccCCcEEEcc---CC--cEEEeecCC
Q psy9140 11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VSEARS-------IIHSGGRYSITT---AG--ALHIRDTGM 76 (114)
Q Consensus 11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~~~~~-------~~~~~~r~~v~~---~G--~L~I~~v~~ 76 (114)
...|+...+.+|.+|.|+|......... .+.|+|.. ....+. ....++||.+.. ++ +|.|.+++.
T Consensus 3 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~-~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~ 81 (116)
T cd07706 3 TQAQPDVSVQVGEEVTLNCRYETSWTNY-YIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQL 81 (116)
T ss_pred EEeCCceEEcCCCCEEEEEEEeCCCCce-EEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCH
Confidence 4567788999999999999975422111 78999842 211110 012358998852 22 699999999
Q ss_pred CCCCeeeEEEEeeccCC-----cEEeCCCeEEEEe
Q psy9140 77 EDSYIRYYCQTTHKLTG-----ERKISPPSQVMVS 106 (114)
Q Consensus 77 ~D~gg~Y~C~a~n~l~~-----~~~~s~~a~L~V~ 106 (114)
+|+| .|.|.+.....+ ...-+..++|.|+
T Consensus 82 ~Dsg-~Y~C~~~~~~~~~~~~~~~~fg~gt~l~v~ 115 (116)
T cd07706 82 EDSA-KYFCALSTLGMGSYDTDKLIFGKGTRVTVE 115 (116)
T ss_pred HHCE-EEEEEEECCCCCcccccCCEECCCeEEEEc
Confidence 9995 999999964321 1234567788775
No 139
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.82 E-value=7.9e-08 Score=65.07 Aligned_cols=77 Identities=17% Similarity=0.200 Sum_probs=51.8
Q ss_pred ccceeEEEeCCeEEEEeecCCCC---CCcc-eEEEeeCCee-----eeeee-------eccCCcEEEc---cC--CcEEE
Q psy9140 13 NTGNTFVLRGNIAVLQCNIPAYN---HNLL-LIAWLREGVS-----EARSI-------IHSGGRYSIT---TA--GALHI 71 (114)
Q Consensus 13 ~~~d~~v~~G~~AvL~C~~~~~~---~~~~-~vsW~kd~~~-----~~~~~-------~~~~~r~~v~---~~--G~L~I 71 (114)
.|+...+.+|.+|+|+|...... .+.. .+.|+|.... +++.. ..-.+||.+. .. -+|+|
T Consensus 5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I 84 (119)
T cd05712 5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI 84 (119)
T ss_pred CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence 47778999999999999763211 1112 6899997532 11100 1113699883 22 36999
Q ss_pred eecCCCCCCeeeEEEEeec
Q psy9140 72 RDTGMEDSYIRYYCQTTHK 90 (114)
Q Consensus 72 ~~v~~~D~gg~Y~C~a~n~ 90 (114)
++++.+|+| .|.|.+...
T Consensus 85 ~~l~~~Dsg-~Y~C~~~~~ 102 (119)
T cd05712 85 SDAQPEDSG-KYFFRVELG 102 (119)
T ss_pred ccCChhhCe-EEEEEEEcC
Confidence 999999995 999998653
No 140
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.82 E-value=4.5e-08 Score=64.53 Aligned_cols=80 Identities=21% Similarity=0.335 Sum_probs=50.9
Q ss_pred CeEEEEeecCCCCCCcc-eEEEeeCCee-----ee-e-ee-----e-ccCCcEEEc-----cCCcEEEeecCCCCCCeee
Q psy9140 23 NIAVLQCNIPAYNHNLL-LIAWLREGVS-----EA-R-SI-----I-HSGGRYSIT-----TAGALHIRDTGMEDSYIRY 83 (114)
Q Consensus 23 ~~AvL~C~~~~~~~~~~-~vsW~kd~~~-----~~-~-~~-----~-~~~~r~~v~-----~~G~L~I~~v~~~D~gg~Y 83 (114)
.+|.|+|.......+.. .|.|.|.... ++ + .. . .-.+|.... .+++|.|+||+.+|+| .|
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~G-tY 79 (100)
T cd05888 1 GDTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEG-KY 79 (100)
T ss_pred CCEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccce-EE
Confidence 36899999854332334 8999994321 11 1 00 0 001344432 2678999999999995 99
Q ss_pred EEEEeeccCCcEEeCCCeEEEE
Q psy9140 84 YCQTTHKLTGERKISPPSQVMV 105 (114)
Q Consensus 84 ~C~a~n~l~~~~~~s~~a~L~V 105 (114)
.|.+.+.-+|. .+....|.|
T Consensus 80 ~C~v~~~p~g~--~~~~~~L~V 99 (100)
T cd05888 80 KCRVITFPAGN--FEAELVLTV 99 (100)
T ss_pred EEEEEeCCCCC--eeeEEEEEe
Confidence 99999966664 355666665
No 141
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.79 E-value=3.6e-08 Score=64.24 Aligned_cols=85 Identities=20% Similarity=0.278 Sum_probs=55.8
Q ss_pred EEEeCCeEEEEeecCCCCCCcceEEEeeCCe--e---eeeee----eccCCcEEEccCC---cEEEeecCCCCCCeeeEE
Q psy9140 18 FVLRGNIAVLQCNIPAYNHNLLLIAWLREGV--S---EARSI----IHSGGRYSITTAG---ALHIRDTGMEDSYIRYYC 85 (114)
Q Consensus 18 ~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~--~---~~~~~----~~~~~r~~v~~~G---~L~I~~v~~~D~gg~Y~C 85 (114)
.|.+|++|.|.|...........+.|+|-.. . ++... ....+||.+..++ .|.|++++.+|+| .|.|
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg-~Y~C 80 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEA-DYYC 80 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCE-EEEE
Confidence 4679999999999754311111689988543 1 11110 0114689886554 4999999999995 9999
Q ss_pred EEeeccCCcEEeCCCeEEEE
Q psy9140 86 QTTHKLTGERKISPPSQVMV 105 (114)
Q Consensus 86 ~a~n~l~~~~~~s~~a~L~V 105 (114)
.+.+. ....-+..++|.|
T Consensus 81 ~~~~~--~~~~fg~gT~L~V 98 (98)
T cd04984 81 QVWDS--NSYVFGGGTKLTV 98 (98)
T ss_pred EEccC--CCCEECCCEEEeC
Confidence 99864 3334566777765
No 142
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.75 E-value=2.9e-08 Score=63.67 Aligned_cols=68 Identities=24% Similarity=0.502 Sum_probs=47.2
Q ss_pred EeCCeEEEEeecCCCCCCcceEEEeeCCeeeeee------eeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140 20 LRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARS------IIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK 90 (114)
Q Consensus 20 ~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~------~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~ 90 (114)
..|+.+.|.|.+.++.++.+.++|+||+..+... ....++.|.+. ..|.|...+.+|. +.|+|.|.|.
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~--s~l~v~~~~~~~~-~~y~C~v~h~ 84 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVS--SQLTVSPSDWNSG-DTYTCVVTHE 84 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEE--EEEEECHHHhCCC-CCEEEEEEeC
Confidence 5799999999998874322389999999875211 11334444443 3577777766677 5999999996
No 143
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.74 E-value=1.4e-07 Score=62.52 Aligned_cols=77 Identities=19% Similarity=0.309 Sum_probs=51.0
Q ss_pred eEEEEeecCCCCCCcc-eEEEeeCCe----eeeeeee--------ccCCcEEE----ccCCcEEEeecCCCCCCeeeEEE
Q psy9140 24 IAVLQCNIPAYNHNLL-LIAWLREGV----SEARSII--------HSGGRYSI----TTAGALHIRDTGMEDSYIRYYCQ 86 (114)
Q Consensus 24 ~AvL~C~~~~~~~~~~-~vsW~kd~~----~~~~~~~--------~~~~r~~v----~~~G~L~I~~v~~~D~gg~Y~C~ 86 (114)
+|.|+|.... .+.. .|+|.|-.. .+..-.. .-.+|..+ ..+++|.|+||+.+|+| .|+|.
T Consensus 2 ~vtL~C~~~~--~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G-~Y~C~ 78 (96)
T cd05887 2 NVTLKCRIQV--NETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIG-VYICK 78 (96)
T ss_pred CEEEEEEecC--CCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccE-EEEEE
Confidence 6899999854 2345 899998532 2210000 11246666 23789999999999995 99999
Q ss_pred EeeccCCcEEeCCCeEEEE
Q psy9140 87 TTHKLTGERKISPPSQVMV 105 (114)
Q Consensus 87 a~n~l~~~~~~s~~a~L~V 105 (114)
+.+.-.|. .++.+.|.|
T Consensus 79 v~tfP~G~--~~~~~~l~~ 95 (96)
T cd05887 79 AVTFPLGN--TQSSTTVTV 95 (96)
T ss_pred EEeCCCCC--eeEEEEEEE
Confidence 99887775 333455554
No 144
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.73 E-value=1.3e-07 Score=62.86 Aligned_cols=79 Identities=18% Similarity=0.269 Sum_probs=51.5
Q ss_pred eEEEEeecCCC-CCCcc-eEEEeeCC---e-eee-ee-----ee--ccCCcEEEcc----CCcEEEeecCCCCCCeeeEE
Q psy9140 24 IAVLQCNIPAY-NHNLL-LIAWLREG---V-SEA-RS-----II--HSGGRYSITT----AGALHIRDTGMEDSYIRYYC 85 (114)
Q Consensus 24 ~AvL~C~~~~~-~~~~~-~vsW~kd~---~-~~~-~~-----~~--~~~~r~~v~~----~G~L~I~~v~~~D~gg~Y~C 85 (114)
.|.|+|..... +...+ .|+|.|.. . .++ +. .. .-.+|..... +++|.|+|++.+|+| .|+|
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G-~Y~C 80 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEG-VYIC 80 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCE-EEEE
Confidence 58999998532 12233 79999952 1 111 11 01 1135666542 489999999999995 9999
Q ss_pred EEeeccCCcEEeCCCeEEEE
Q psy9140 86 QTTHKLTGERKISPPSQVMV 105 (114)
Q Consensus 86 ~a~n~l~~~~~~s~~a~L~V 105 (114)
.+.|.-+|. .+....|.|
T Consensus 81 ~v~t~P~g~--~~~~~~L~V 98 (99)
T cd05886 81 EFATFPTGN--RESQLNLTV 98 (99)
T ss_pred EEEeCCCCC--eEEEEEEEE
Confidence 999965553 455667766
No 145
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.72 E-value=8.9e-08 Score=64.25 Aligned_cols=82 Identities=20% Similarity=0.207 Sum_probs=58.6
Q ss_pred eeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeee-----e--ccCCcEEEccCCcEEEeecCCCCCCeeeEEEEe
Q psy9140 16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSI-----I--HSGGRYSITTAGALHIRDTGMEDSYIRYYCQTT 88 (114)
Q Consensus 16 d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~-----~--~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~ 88 (114)
...|.+|..+.|.|.+.++|+|. ...|.+++..+.-.. . ..+.|| ...|++..+..+|+| .|+|.|.
T Consensus 12 ~~~v~~gE~~~L~V~ieAYP~p~-~~~W~~~~~~l~~~~~~~~~~~~~~~~rY----~S~L~L~Rlk~~E~G-~YTf~a~ 85 (101)
T cd05860 12 TIFVNAGENLDLIVEYEAYPKPE-HQQWIYMNRTLTNTSDHYVKSRNESNNRY----VSELHLTRLKGTEGG-TYTFLVS 85 (101)
T ss_pred eEEEECCCCEEEEEEEEeCCCCe-eeEEEcCCcccCccccceeEEeccCceEE----EEEEEEeecChhhCc-EEEEEEE
Confidence 45799999999999999887652 489999987542100 0 011234 246999999999995 9999999
Q ss_pred eccCCcEEeCCCeEEEEe
Q psy9140 89 HKLTGERKISPPSQVMVS 106 (114)
Q Consensus 89 n~l~~~~~~s~~a~L~V~ 106 (114)
|..+. .+..-.|.|+
T Consensus 86 N~~~~---~s~tF~l~v~ 100 (101)
T cd05860 86 NSDAS---ASVTFNVYVN 100 (101)
T ss_pred CCCCe---EEEEEEEEEe
Confidence 98654 3445555553
No 146
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.66 E-value=2.6e-07 Score=58.22 Aligned_cols=62 Identities=15% Similarity=0.267 Sum_probs=40.3
Q ss_pred EEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccC-------CcEEEeecCCCCCCeeeEEEEeeccC
Q psy9140 25 AVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTA-------GALHIRDTGMEDSYIRYYCQTTHKLT 92 (114)
Q Consensus 25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~-------G~L~I~~v~~~D~gg~Y~C~a~n~l~ 92 (114)
+.|.|.+.++.+. +.++|+||+..+.. ......++++ ..|.|...+.+|. |.|+|.|.|..-
T Consensus 2 ~~L~C~v~g~~P~-~~v~W~~~g~~l~~----~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~-~~y~C~a~n~~l 70 (82)
T cd05759 2 YNLTCRARGAKPA-AEIIWFRDGEVLDG----ATYSKELLKDGKRETTVSTLPITPSDHDTG-RTFTCRARNEAL 70 (82)
T ss_pred EEEEEEEeCccCC-CEEEEEECCEEccC----ceeeeeEecCCCeEEEEEEEEEeCceecCC-CEEEEEEcCccC
Confidence 6799999765222 28999999986421 0001112233 3588887777776 599999999753
No 147
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.65 E-value=3.5e-07 Score=63.13 Aligned_cols=80 Identities=23% Similarity=0.434 Sum_probs=51.5
Q ss_pred cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeee------------eeeccCCcEEEccCCcEEEeecC
Q psy9140 8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEAR------------SIIHSGGRYSITTAGALHIRDTG 75 (114)
Q Consensus 8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~------------~~~~~~~r~~v~~~G~L~I~~v~ 75 (114)
+...+.+.+....+|..+.|.|.+.++.++.+.|+|+|++..... .....|+-|.+. ..|.|. .+
T Consensus 39 P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~--s~L~v~-~~ 115 (139)
T cd05771 39 PRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLS--SHLTLE-PG 115 (139)
T ss_pred CceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEE--EEEEec-CC
Confidence 445666666666689999999999886433238999999854210 011334455543 345555 44
Q ss_pred CCCCCeeeEEEEeec
Q psy9140 76 MEDSYIRYYCQTTHK 90 (114)
Q Consensus 76 ~~D~gg~Y~C~a~n~ 90 (114)
.+|.|..|+|.+.|.
T Consensus 116 ~~~~g~~ytC~V~H~ 130 (139)
T cd05771 116 TEDAGATYTCRVSHV 130 (139)
T ss_pred ccCCCCEEEEEEEcC
Confidence 445556999999985
No 148
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.65 E-value=1.9e-07 Score=62.00 Aligned_cols=84 Identities=31% Similarity=0.377 Sum_probs=53.7
Q ss_pred EEEeCCeEEEEeecCCCCCCcceEEEeeCCee-----e---eeee---------eccCCcEEE--ccCC---cEEEeecC
Q psy9140 18 FVLRGNIAVLQCNIPAYNHNLLLIAWLREGVS-----E---ARSI---------IHSGGRYSI--TTAG---ALHIRDTG 75 (114)
Q Consensus 18 ~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~-----~---~~~~---------~~~~~r~~v--~~~G---~L~I~~v~ 75 (114)
.|-+|++|.|.|......... .+.|+|-... + +... ....+||.+ ..++ .|.|++++
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~-~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~ 80 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENT-RIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVK 80 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCC-eEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCC
Confidence 467899999999974421122 6899986432 1 1000 011468876 3333 49999999
Q ss_pred CCCCCeeeEEEEeeccCCcEEeCCCeEEEE
Q psy9140 76 MEDSYIRYYCQTTHKLTGERKISPPSQVMV 105 (114)
Q Consensus 76 ~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V 105 (114)
.+|+| .|.|...+. ....-+..++|.|
T Consensus 81 ~~Dsg-~YyCa~~~~--~~~~Fg~gT~L~V 107 (107)
T cd07700 81 PEDSG-TYFCMTVGS--PELTFGTGTQLSV 107 (107)
T ss_pred HHHCE-EEEEeEcCC--CCCEECcCEEEeC
Confidence 99995 999998753 2234466667664
No 149
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=98.63 E-value=3.4e-07 Score=62.07 Aligned_cols=93 Identities=20% Similarity=0.290 Sum_probs=59.8
Q ss_pred eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCe--ee---eeee---------eccCCcEEEccC--C---cEEEe
Q psy9140 12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGV--SE---ARSI---------IHSGGRYSITTA--G---ALHIR 72 (114)
Q Consensus 12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~--~~---~~~~---------~~~~~r~~v~~~--G---~L~I~ 72 (114)
++|....+-+|++|.|+|...........+.|+|-.. .. +... ....+||.+.-+ . .|.|+
T Consensus 2 ~~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~ 81 (117)
T cd04981 2 VESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLN 81 (117)
T ss_pred ccCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEEC
Confidence 4677888999999999998643211111689998432 21 1100 011468988522 2 69999
Q ss_pred ecCCCCCCeeeEEEEeecc---CCcEEeCCCeEEEE
Q psy9140 73 DTGMEDSYIRYYCQTTHKL---TGERKISPPSQVMV 105 (114)
Q Consensus 73 ~v~~~D~gg~Y~C~a~n~l---~~~~~~s~~a~L~V 105 (114)
+++.+|+ |.|.|.+.... +....-...++|.|
T Consensus 82 ~~~~~Ds-a~YyCa~~~~~~~~~~~~~FG~GT~L~V 116 (117)
T cd04981 82 SLTPEDT-AVYYCARGLGGYGYGYFDYWGQGTLVTV 116 (117)
T ss_pred CCCHHHC-EEEEEEEEcCCCCCccEeeECCCEEEEE
Confidence 9999999 59999987532 22334566777776
No 150
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.61 E-value=3.2e-07 Score=58.79 Aligned_cols=62 Identities=16% Similarity=0.231 Sum_probs=39.1
Q ss_pred EEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEE--ccC-CcEEEee-----cCCCCCCeeeEEEEeeccCC
Q psy9140 25 AVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSI--TTA-GALHIRD-----TGMEDSYIRYYCQTTHKLTG 93 (114)
Q Consensus 25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v--~~~-G~L~I~~-----v~~~D~gg~Y~C~a~n~l~~ 93 (114)
+.|.|.+.++-++ ..|+|+||+..+. .+ ...+ .++ |..++.. +..+|.|..|+|.|.|.--.
T Consensus 2 ~~LtC~a~g~~P~-~~ItW~k~g~~l~-----~~-~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~ 71 (83)
T cd07705 2 AKLRCTSSGSKPA-ANIKWRKGDQELE-----GA-PTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH 71 (83)
T ss_pred EEEEEEecCccCC-CEeEEEECCEECC-----Cc-ceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence 7899999775322 3899999998642 11 1122 223 2444433 55566667999999997543
No 151
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.58 E-value=2.6e-07 Score=59.97 Aligned_cols=72 Identities=21% Similarity=0.313 Sum_probs=50.0
Q ss_pred EEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeee--------eeccCCcEEEcc---CC--cEEEeecCCCCCCeeeE
Q psy9140 18 FVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARS--------IIHSGGRYSITT---AG--ALHIRDTGMEDSYIRYY 84 (114)
Q Consensus 18 ~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~--------~~~~~~r~~v~~---~G--~L~I~~v~~~D~gg~Y~ 84 (114)
.+.+|++|.|+|......... .+.|.|......+. .....+||.+.. +| .|.|++++.+|+| .|.
T Consensus 3 ~~~~G~~vtl~C~~~~~~~~~-~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG-~Y~ 80 (98)
T cd05716 3 TGELGGSVTIPCPYPPKNRSY-EKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAG-WYW 80 (98)
T ss_pred EEEeCCeEEEEeeCCCCCCCc-EeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCE-EEE
Confidence 578999999999975422222 78999975321000 012357888742 23 6999999999995 999
Q ss_pred EEEeecc
Q psy9140 85 CQTTHKL 91 (114)
Q Consensus 85 C~a~n~l 91 (114)
|.+.+..
T Consensus 81 C~~~~~~ 87 (98)
T cd05716 81 CGVGDDG 87 (98)
T ss_pred EEcccCC
Confidence 9998753
No 152
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.55 E-value=4.1e-07 Score=60.83 Aligned_cols=83 Identities=18% Similarity=0.268 Sum_probs=55.3
Q ss_pred cceeeccceeEEEeCCeEEEEeecCCCCCCcc-eEEEeeCCeeeeeeeecc--CCcEEEccCCcEEEeecCCCCCCeeeE
Q psy9140 8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARSIIHS--GGRYSITTAGALHIRDTGMEDSYIRYY 84 (114)
Q Consensus 8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd~~~~~~~~~~~--~~r~~v~~~G~L~I~~v~~~D~gg~Y~ 84 (114)
+..++.+....+.+|+...|.|.+++..+... .|.|+|++..+..-.... ...+. ..-+|.+. +..+|.|..|+
T Consensus 2 ~~V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~--~~stlt~~-~~r~D~g~~~s 78 (100)
T cd05755 2 DSVELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVN--APATITIT-VDREDHGANFS 78 (100)
T ss_pred ceEEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCce--eEEEEEEe-cchhhCCcEEE
Confidence 34677888888999999999999976432222 589999998752110000 01111 12356665 67788888999
Q ss_pred EEEeeccCC
Q psy9140 85 CQTTHKLTG 93 (114)
Q Consensus 85 C~a~n~l~~ 93 (114)
|.|.+.|..
T Consensus 79 C~A~l~l~~ 87 (100)
T cd05755 79 CETELDLRP 87 (100)
T ss_pred EEEEeccCc
Confidence 999998754
No 153
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.53 E-value=1.3e-06 Score=57.81 Aligned_cols=68 Identities=22% Similarity=0.328 Sum_probs=46.9
Q ss_pred CeEEEEeecCCCCCCcc-eEEEeeCCe----eee-ee-----ee--ccCCcEEEc----cCCcEEEeecCCCCCCeeeEE
Q psy9140 23 NIAVLQCNIPAYNHNLL-LIAWLREGV----SEA-RS-----II--HSGGRYSIT----TAGALHIRDTGMEDSYIRYYC 85 (114)
Q Consensus 23 ~~AvL~C~~~~~~~~~~-~vsW~kd~~----~~~-~~-----~~--~~~~r~~v~----~~G~L~I~~v~~~D~gg~Y~C 85 (114)
+.+.|.|..+.. ..+ .++|.|-+. .+. +. .. .-.+|.... .+++|.|+||+.+|+| .|+|
T Consensus 1 ~~vtL~C~~~~~--~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G-~Y~C 77 (96)
T cd05889 1 EKMKLECVYPKT--GVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVG-LYCC 77 (96)
T ss_pred CCEEEEeEcCCC--CcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCE-EEEE
Confidence 368899998642 335 889999642 221 10 01 112566654 3689999999999995 9999
Q ss_pred EEeeccCC
Q psy9140 86 QTTHKLTG 93 (114)
Q Consensus 86 ~a~n~l~~ 93 (114)
...+.-.|
T Consensus 78 ~~~t~P~g 85 (96)
T cd05889 78 SLVTYPQG 85 (96)
T ss_pred EEEeCCCC
Confidence 99988766
No 154
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.50 E-value=1.1e-06 Score=57.40 Aligned_cols=65 Identities=17% Similarity=0.265 Sum_probs=45.8
Q ss_pred eeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeee--eccCCcEEEccCCcEEEeecCCCCCCeeeEEEEe
Q psy9140 16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSI--IHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTT 88 (114)
Q Consensus 16 d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~--~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~ 88 (114)
...|.+|++|+|+|..+. ... ...|+|++....+-. ....+++ ...+.|.+++.+|+| .|+|...
T Consensus 9 ~~vV~~G~~VTL~C~~~~-~~~--~f~l~k~g~~~~~~~~~~~~~~~~----~a~f~I~~~~~~~~G-~Y~C~~~ 75 (94)
T cd05711 9 SPVVPSGENVTLQCHSDI-RFD--RFILYKEGRSKPVLHLYEKHHGGF----QASFPLGPVTPAHAG-TYRCYGS 75 (94)
T ss_pred CCccCCCCeEEEEEecCC-CCC--EEEEEECCCCCCceecccccCCeE----EEEEEecCCCcccCE-EEEEEEE
Confidence 667889999999998754 112 789999987421000 0111334 237999999999995 9999975
No 155
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.50 E-value=3.1e-07 Score=60.64 Aligned_cols=75 Identities=16% Similarity=0.289 Sum_probs=48.7
Q ss_pred ccceeEEEeCCeEEEEeecCCC-CCCcceEEEeeCCeeeee-----eeeccCCcEEEccCCcEEEeecCCCCCCeeeEEE
Q psy9140 13 NTGNTFVLRGNIAVLQCNIPAY-NHNLLLIAWLREGVSEAR-----SIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQ 86 (114)
Q Consensus 13 ~~~d~~v~~G~~AvL~C~~~~~-~~~~~~vsW~kd~~~~~~-----~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~ 86 (114)
.|....+..|..|.|.|.+.+| -++.+.++|.||+..... +....|+-|.+. ..|.|..-++.+. -.|+|.
T Consensus 5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~--s~l~v~~~~w~~g-~~ysC~ 81 (96)
T cd07696 5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVT--STLNVSTDDWISG-DTFQCK 81 (96)
T ss_pred CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEE--EEEEeCHHHccCC-CcEEEE
Confidence 4444456679999999999888 444448999999753211 112335556554 3555555444343 589999
Q ss_pred Eeec
Q psy9140 87 TTHK 90 (114)
Q Consensus 87 a~n~ 90 (114)
+.|.
T Consensus 82 V~H~ 85 (96)
T cd07696 82 VTHP 85 (96)
T ss_pred EECC
Confidence 9996
No 156
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.45 E-value=2.6e-06 Score=62.76 Aligned_cols=90 Identities=17% Similarity=0.247 Sum_probs=61.8
Q ss_pred eeEEEeCCeEEEEeecC-CCCCCcceEEEeeCCeeeeee-----eecc--CCcEEEc----cCCcEEEeecCCCCCCeee
Q psy9140 16 NTFVLRGNIAVLQCNIP-AYNHNLLLIAWLREGVSEARS-----IIHS--GGRYSIT----TAGALHIRDTGMEDSYIRY 83 (114)
Q Consensus 16 d~~v~~G~~AvL~C~~~-~~~~~~~~vsW~kd~~~~~~~-----~~~~--~~r~~v~----~~G~L~I~~v~~~D~gg~Y 83 (114)
..+|.+|+.|.|.|... +...+ .|.|.|..+.+..- .... .+|+.++ .+-.|.|.+|+.+|+| .|
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~--qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeG-cY 100 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSI--LITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNG-CY 100 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccc--eEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCe-EE
Confidence 45788999999999974 32122 89999986654311 1111 2477652 2457999999999995 99
Q ss_pred EEEEeeccCCcEEeCCCeEEEEeccc
Q psy9140 84 YCQTTHKLTGERKISPPSQVMVSEIA 109 (114)
Q Consensus 84 ~C~a~n~l~~~~~~s~~a~L~V~~~~ 109 (114)
+|....-..|. ..+..+-|.|+.+.
T Consensus 101 ~C~F~tfp~G~-~~~gt~CLtVt~~~ 125 (189)
T PHA02987 101 TCIFNTLLSKN-NEKGVVCLNVTTDS 125 (189)
T ss_pred EEEEEecCCCC-CceeEEEEEEEchh
Confidence 99998776551 24557778777553
No 157
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.43 E-value=1.7e-06 Score=54.95 Aligned_cols=64 Identities=17% Similarity=0.311 Sum_probs=39.2
Q ss_pred EEEEeecCCCCCCcceEEEeeCCeeeeee----eeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccC
Q psy9140 25 AVLQCNIPAYNHNLLLIAWLREGVSEARS----IIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLT 92 (114)
Q Consensus 25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~----~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~ 92 (114)
+.|.|.+.++-++ +.++|+|++..+... ....++.|.+. ..|.+ ..+.+|.|+.|+|.|.|..-
T Consensus 2 ~~L~C~~~~~~P~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~--s~l~~-~~~~~d~g~~~~C~v~h~~l 69 (82)
T cd05761 2 VELTCTSSGSKPA-ATIRWFKGDKELKGVKLKEEDENGKTFTVT--SSLRF-QVDREDDGAPIICRVDHPAL 69 (82)
T ss_pred EEEEEEecCcCcC-CeEEEEECCEEccCceeeEecCCCCEEEEE--EEEEE-EcchhhCCCEEEEEEeChhc
Confidence 6899999665222 289999999865200 01122344443 24444 45555656799999999743
No 158
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.39 E-value=1.3e-06 Score=59.13 Aligned_cols=70 Identities=17% Similarity=0.208 Sum_probs=45.6
Q ss_pred eCCeEEEEeecC--CCC--CCcc-eEEEeeCC-----eeee-ee--------eeccCCcEEEcc------CCcEEEeecC
Q psy9140 21 RGNIAVLQCNIP--AYN--HNLL-LIAWLREG-----VSEA-RS--------IIHSGGRYSITT------AGALHIRDTG 75 (114)
Q Consensus 21 ~G~~AvL~C~~~--~~~--~~~~-~vsW~kd~-----~~~~-~~--------~~~~~~r~~v~~------~G~L~I~~v~ 75 (114)
.|.+|.|+|... +.. .+.. .|.|.|-. .... +- ...-.+|..+.. +-+|.|+|++
T Consensus 1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~ 80 (110)
T cd05902 1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR 80 (110)
T ss_pred CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence 388999999952 211 1112 89999851 2111 10 011246777743 3489999999
Q ss_pred CCCCCeeeEEEEeecc
Q psy9140 76 MEDSYIRYYCQTTHKL 91 (114)
Q Consensus 76 ~~D~gg~Y~C~a~n~l 91 (114)
.+|+| .|+|.+....
T Consensus 81 ~~D~G-~Y~C~v~~g~ 95 (110)
T cd05902 81 YSDSG-TYRCEVVLGI 95 (110)
T ss_pred HHHCE-EEEEEEEECC
Confidence 99995 9999999854
No 159
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=98.39 E-value=2.2e-06 Score=53.59 Aligned_cols=64 Identities=27% Similarity=0.523 Sum_probs=42.0
Q ss_pred eEEEEeecCCCCCCcceEEEeeCCeeeee------eeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140 24 IAVLQCNIPAYNHNLLLIAWLREGVSEAR------SIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK 90 (114)
Q Consensus 24 ~AvL~C~~~~~~~~~~~vsW~kd~~~~~~------~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~ 90 (114)
.|.|.|.+.+|-++.+.+.|+||+..+.. +....++.|.+. ..|.|.....++. ..|+|.+.|.
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~--s~L~v~~~~~~~~-~~~tC~V~H~ 70 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLS--SYLTVSASTWESG-DTYTCQVTHE 70 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEE--EEEEEccccCCCC-CEEEEEEEEc
Confidence 47899999777544348999999985321 011245556553 3566655555554 6999999986
No 160
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.38 E-value=2.3e-06 Score=57.94 Aligned_cols=79 Identities=13% Similarity=0.293 Sum_probs=52.2
Q ss_pred ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeee----eeccC-CcEEEccCCcEEEeecCCCCCCeee
Q psy9140 9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARS----IIHSG-GRYSITTAGALHIRDTGMEDSYIRY 83 (114)
Q Consensus 9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~----~~~~~-~r~~v~~~G~L~I~~v~~~D~gg~Y 83 (114)
...+.+...+...|+.+.|.|.+.+|-++.+.++|+||+..+... ....+ +.|.+. -.|.+. ...+|.+..|
T Consensus 8 ~p~i~~~~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~--S~L~~~-~~~~d~~~~y 84 (111)
T cd05772 8 VPVVSGPSGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVT--STVQVK-LTEDDVHSQV 84 (111)
T ss_pred CcEeCCchhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEE--EEEEEE-CccccccCce
Confidence 356666666777899999999998876544489999999875210 00112 245543 245555 3555554469
Q ss_pred EEEEeec
Q psy9140 84 YCQTTHK 90 (114)
Q Consensus 84 ~C~a~n~ 90 (114)
+|.+.|.
T Consensus 85 tC~V~H~ 91 (111)
T cd05772 85 TCEVQHR 91 (111)
T ss_pred EEEEEeC
Confidence 9999996
No 161
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.37 E-value=3.2e-06 Score=58.08 Aligned_cols=81 Identities=21% Similarity=0.314 Sum_probs=50.2
Q ss_pred CCeEEEEeecCCCC---------CCcceEEEeeCC---------eeeeeee--------eccCCcEEEc------cCCcE
Q psy9140 22 GNIAVLQCNIPAYN---------HNLLLIAWLREG---------VSEARSI--------IHSGGRYSIT------TAGAL 69 (114)
Q Consensus 22 G~~AvL~C~~~~~~---------~~~~~vsW~kd~---------~~~~~~~--------~~~~~r~~v~------~~G~L 69 (114)
|.+|+|+|.+...+ +++..|.|.|-. +..++-. ..-.+|..+. .+.+|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 78999999983111 122289998841 1111000 1123577664 25689
Q ss_pred EEeecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140 70 HIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVS 106 (114)
Q Consensus 70 ~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~ 106 (114)
.|++++.+|+| .|+|.+.+.... ......|.|+
T Consensus 82 ~i~~v~~sD~G-~Y~C~V~~g~~~---~~~~v~L~V~ 114 (117)
T cd05901 82 TIVKLRASDAG-VYRCEVMHGIED---TQDTVSLDVS 114 (117)
T ss_pred EEcccccccCE-EEEEEEEECCcc---cEEEEEEEEE
Confidence 99999999995 999999986543 2334455554
No 162
>PHA03376 BARF1; Provisional
Probab=98.36 E-value=5.5e-06 Score=61.61 Aligned_cols=90 Identities=16% Similarity=0.161 Sum_probs=60.2
Q ss_pred eEEEeCCeEEEEeecC-CCCCCcceEEEee----CCeeeee--------eeeccCCcEEEcc-CC--cEEEeecCCCCCC
Q psy9140 17 TFVLRGNIAVLQCNIP-AYNHNLLLIAWLR----EGVSEAR--------SIIHSGGRYSITT-AG--ALHIRDTGMEDSY 80 (114)
Q Consensus 17 ~~v~~G~~AvL~C~~~-~~~~~~~~vsW~k----d~~~~~~--------~~~~~~~r~~v~~-~G--~L~I~~v~~~D~g 80 (114)
..+..|+.|+|.|.-. ...+....|.|+| ++...+. +-..--+|+.+.. +| .|.|.+++.+|.|
T Consensus 21 Vta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdG 100 (221)
T PHA03376 21 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDG 100 (221)
T ss_pred hhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCc
Confidence 4577899999999984 3333323999999 4444432 1123356777732 23 6999999999995
Q ss_pred eeeEEEEeeccCCcEEeCC-----CeEEEEec
Q psy9140 81 IRYYCQTTHKLTGERKISP-----PSQVMVSE 107 (114)
Q Consensus 81 g~Y~C~a~n~l~~~~~~s~-----~a~L~V~~ 107 (114)
+|+|.....-++..+..- +-+|.|+.
T Consensus 101 -tY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a 131 (221)
T PHA03376 101 -NYLCRMKLGETEVTKQEHLSVVKPLTLSVHS 131 (221)
T ss_pred -eEEEEEEcCCCceeeeeeeeeeecceEEEEe
Confidence 999999987666554432 22366664
No 163
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.34 E-value=5.3e-06 Score=53.64 Aligned_cols=76 Identities=16% Similarity=0.254 Sum_probs=48.5
Q ss_pred EEEEeecCCCCCCcceEEEeeCCeeeeeeee---ccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCCcEEeCCCe
Q psy9140 25 AVLQCNIPAYNHNLLLIAWLREGVSEARSII---HSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPS 101 (114)
Q Consensus 25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~---~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a 101 (114)
+.|.|.+.++ +|...|+|+|++..+..... ..+++|.+. ..|.+ .++.+|.|..|+|+|.|+.-.. ....-
T Consensus 2 ~~L~C~s~gS-kP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~--S~L~~-~p~~eDdG~~~~C~a~~~~l~~--~~~~~ 75 (82)
T cd05883 2 IELNCTAMAS-KPAATIRWFKGNKELTGKSTVEETWSRMFTVT--SQLML-KVTKEDDGVPVICLVDHPAVKD--LQTQR 75 (82)
T ss_pred EEEEEEecCC-CCCCEEEEEECCEECcCcccceeccCCCcEEE--EEEEE-ECchhhCCCEEEEEEcCcccCC--ceeeE
Confidence 5699999765 23229999999987631100 122345554 46777 6777777889999999976432 33355
Q ss_pred EEEEe
Q psy9140 102 QVMVS 106 (114)
Q Consensus 102 ~L~V~ 106 (114)
.|.|.
T Consensus 76 ~L~V~ 80 (82)
T cd05883 76 YLEVQ 80 (82)
T ss_pred EEEEE
Confidence 55553
No 164
>smart00406 IGv Immunoglobulin V-Type.
Probab=98.33 E-value=1.2e-06 Score=53.75 Aligned_cols=62 Identities=23% Similarity=0.431 Sum_probs=41.4
Q ss_pred eEEEEeecCCCCCCcc-eEEEeeCCe-----eeeeee--------eccCCcEEEccC-----CcEEEeecCCCCCCeeeE
Q psy9140 24 IAVLQCNIPAYNHNLL-LIAWLREGV-----SEARSI--------IHSGGRYSITTA-----GALHIRDTGMEDSYIRYY 84 (114)
Q Consensus 24 ~AvL~C~~~~~~~~~~-~vsW~kd~~-----~~~~~~--------~~~~~r~~v~~~-----G~L~I~~v~~~D~gg~Y~ 84 (114)
+|.|.|.......+ . .+.|++... .++... ....+||.+..+ ..|.|++++.+|+| .|.
T Consensus 1 ~v~l~C~~~~~~~~-~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G-~Y~ 78 (81)
T smart00406 1 SVTLSCKASGFTFS-SYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTG-TYY 78 (81)
T ss_pred CEEEEEEEeccccc-eeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCE-EEE
Confidence 57899998543332 2 789999652 111110 023579987643 36999999999995 999
Q ss_pred EEE
Q psy9140 85 CQT 87 (114)
Q Consensus 85 C~a 87 (114)
|.+
T Consensus 79 C~v 81 (81)
T smart00406 79 CAV 81 (81)
T ss_pred EcC
Confidence 963
No 165
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.32 E-value=2e-06 Score=57.03 Aligned_cols=69 Identities=17% Similarity=0.212 Sum_probs=46.5
Q ss_pred EEEeCCeEEEEeecCCCCCCcceEEEeeCCee-------eeeeee----------ccCCcEEEccC---CcEEEeecCCC
Q psy9140 18 FVLRGNIAVLQCNIPAYNHNLLLIAWLREGVS-------EARSII----------HSGGRYSITTA---GALHIRDTGME 77 (114)
Q Consensus 18 ~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~-------~~~~~~----------~~~~r~~v~~~---G~L~I~~v~~~ 77 (114)
.|-+|++|.|.|........ .+.|+|-... |+.... ...+||.+..+ -.|.|++++.+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~--~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~s 79 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPT--GCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKE 79 (104)
T ss_pred cccCCCeEEEEEEecCCCCC--cEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHH
Confidence 46689999999987432112 6899985432 221111 01468886432 26999999999
Q ss_pred CCCeeeEEEEee
Q psy9140 78 DSYIRYYCQTTH 89 (114)
Q Consensus 78 D~gg~Y~C~a~n 89 (114)
|+| .|.|.+.+
T Consensus 80 Dsg-tY~Ca~~~ 90 (104)
T cd05720 80 NEG-YYFCSVAS 90 (104)
T ss_pred HCE-EEEEEEcc
Confidence 995 99998874
No 166
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=98.31 E-value=4.1e-06 Score=53.04 Aligned_cols=64 Identities=25% Similarity=0.522 Sum_probs=46.6
Q ss_pred CCeEEEEeecCCCCCCcceEEEeeCCeeee-----eeee-ccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeecc
Q psy9140 22 GNIAVLQCNIPAYNHNLLLIAWLREGVSEA-----RSII-HSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKL 91 (114)
Q Consensus 22 G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~-----~~~~-~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l 91 (114)
|+.+.|.|.+.+|-+..+.|+|++++..+. .... ..|+.|.+. ..|.|. +++ |..|+|.+.|.-
T Consensus 8 ~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~--s~l~v~---~~~-~~~ysC~V~H~~ 77 (83)
T PF07654_consen 8 GGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVT--SSLTVT---WNS-GDEYSCRVTHES 77 (83)
T ss_dssp TSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEE--EEEEEE---TTT-TGGEEEEEEETT
T ss_pred CCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeee--EEEEec---CCC-CCEEEEEEEECC
Confidence 899999999977655444899999998752 1112 467888776 467777 444 459999999963
No 167
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.31 E-value=4.7e-06 Score=53.48 Aligned_cols=63 Identities=14% Similarity=0.302 Sum_probs=41.2
Q ss_pred EEEEeecCCCCCCcceEEEeeCCeeeeee-----eeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeecc
Q psy9140 25 AVLQCNIPAYNHNLLLIAWLREGVSEARS-----IIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKL 91 (114)
Q Consensus 25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~-----~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l 91 (114)
+.|.|.+.++-++ +.|+|+||+..+.-. ....++.|.+. -.|.|. .+.+|.|..|+|.|.|..
T Consensus 2 ~~LtC~a~gf~P~-~~itW~kng~~l~~~~~~~~~~~~~~t~~~~--s~L~~~-~~~~d~g~~ytC~v~h~~ 69 (83)
T cd05884 2 MQLTCKTSGSKPA-ADIRWFKNDKEIKDVKYLKEEDANRKTFTVS--STLDFR-VDRSDDGVAIICRVDHES 69 (83)
T ss_pred EEEEEEeCCccCC-CEEEEEECCEECcCceeeEeeCCCCCEEEEE--EEEEEE-cccccCCCEEEEEEechh
Confidence 5799999776433 489999999975210 01234455543 356665 454555679999999964
No 168
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=98.30 E-value=4e-06 Score=55.20 Aligned_cols=64 Identities=17% Similarity=0.346 Sum_probs=42.6
Q ss_pred EeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeee------eccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140 20 LRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSI------IHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK 90 (114)
Q Consensus 20 ~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~------~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~ 90 (114)
-.|..++|.|.+.+|-++.+.++|+|||..+. .. .+.|+.|.+. -.|.| ..++. ..|+|.+.|.
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~--s~l~~---~~~~~-~~ysC~V~H~ 82 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLL--KSTEF---TPTKG-DEYACRVRHN 82 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEE--EEEEE---CCCCC-CeEEEEEEEC
Confidence 45788899999988765545889999998752 11 1334444443 12333 45555 4999999995
No 169
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=98.28 E-value=2.8e-06 Score=55.83 Aligned_cols=68 Identities=22% Similarity=0.453 Sum_probs=45.8
Q ss_pred EeCCeEEEEeecCCCCCCcceEEEeeCCeeee------eeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140 20 LRGNIAVLQCNIPAYNHNLLLIAWLREGVSEA------RSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK 90 (114)
Q Consensus 20 ~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~------~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~ 90 (114)
..++.+.|.|.+.+|.++.+.++|+||+..+. .+....++.|.+. -.|.|..-++.+. ..|+|.+.|.
T Consensus 12 ~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~--S~L~v~~~~w~~~-~~ytC~V~H~ 85 (94)
T cd05847 12 GTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTT--SELNVTQEDWKSG-KTYTCKVTHQ 85 (94)
T ss_pred CCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEE--EEEEEchHHhcCC-CeEEEEEEEC
Confidence 35677999999988765545899999998641 0112345566553 3566664444444 5999999996
No 170
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=98.25 E-value=1.9e-06 Score=58.85 Aligned_cols=71 Identities=15% Similarity=0.279 Sum_probs=48.3
Q ss_pred EEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeee------eeec-cCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140 18 FVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEAR------SIIH-SGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK 90 (114)
Q Consensus 18 ~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~------~~~~-~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~ 90 (114)
...+++.+.|.|.+.+|-+..+.++|+||+..+.. .... .++-|.+. ..|.|.-.++.|.|..|+|.+.|.
T Consensus 14 e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~--S~L~v~~~~w~~~~~~ytC~V~H~ 91 (115)
T cd05769 14 EIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSIS--SRLRVSATEWFNPRNTFTCIVQFY 91 (115)
T ss_pred HhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEE--EEEEEChHHhccCCCeEEEEEEEe
Confidence 34467889999999887655448999999976421 0111 12456554 467777666655456999999997
No 171
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.24 E-value=2e-06 Score=57.22 Aligned_cols=71 Identities=14% Similarity=0.335 Sum_probs=44.8
Q ss_pred eEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeee-------eeec--cCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140 17 TFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEAR-------SIIH--SGGRYSITTAGALHIRDTGMEDSYIRYYCQT 87 (114)
Q Consensus 17 ~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~-------~~~~--~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a 87 (114)
..+..|..|.|.|.+.+|-+..+.++|+||+..+-- +... .|+-|.+. -.|.|.--.+. .|..|+|.+
T Consensus 11 ~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~--s~L~v~~~~w~-~~~~ytC~V 87 (102)
T cd05768 11 EELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLY--SKLTVSAEDWN-AGDVFTCVV 87 (102)
T ss_pred HHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEE--EEEEEcHHHhc-CCCcEEEEe
Confidence 344568899999999887654448899999986410 0001 13455553 34655333333 345999999
Q ss_pred eec
Q psy9140 88 THK 90 (114)
Q Consensus 88 ~n~ 90 (114)
.|.
T Consensus 88 ~H~ 90 (102)
T cd05768 88 GHE 90 (102)
T ss_pred EeC
Confidence 995
No 172
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.23 E-value=2.5e-06 Score=56.42 Aligned_cols=69 Identities=20% Similarity=0.413 Sum_probs=47.0
Q ss_pred EEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeee------eeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140 19 VLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARS------IIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK 90 (114)
Q Consensus 19 v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~------~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~ 90 (114)
..+|+.+.|.|.+.+|-+..+.++|+|||..+... ....|+.|.+. ..|.|..-.+.+ |..|+|.+.|.
T Consensus 14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~--s~L~v~~~~w~~-~~~~sC~V~H~ 88 (100)
T cd07699 14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLS--SYLTLTKSDWNK-HKVYTCEVTHE 88 (100)
T ss_pred HccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEE--EEEEEcHHHhCC-CCeEEEEEEec
Confidence 34788899999998875433489999999875210 11235666664 456665555544 46999999996
No 173
>KOG1480|consensus
Probab=98.18 E-value=5.1e-07 Score=77.73 Aligned_cols=85 Identities=18% Similarity=0.278 Sum_probs=71.9
Q ss_pred eeeccccceeeccceeEEEeCCeEEEEeecCCCCCCcc-eEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCC
Q psy9140 2 NMGDMSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSY 80 (114)
Q Consensus 2 ~~avv~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~g 80 (114)
++|+++-.|+..|.-+.|-.+.+..|+|..|.. .+. .+.|+|++..+ ..+..+.....+.|.|.-+...|.|
T Consensus 124 r~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~--~paae~~w~k~e~~~-----~pd~n~~~~~d~~li~~~arlsd~~ 196 (909)
T KOG1480|consen 124 RIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEG--DPKAEVEWLKNEVVI-----DPDANVIRASDHNLIISQARLSDSG 196 (909)
T ss_pred HHHHHHHhhccChhhheecccccccccccCccc--chhhhhhccccCCCC-----CccccchhhhcCCccccchhhhhcc
Confidence 467888889999999999999999999997542 334 88999998753 4477777778999999999999996
Q ss_pred eeeEEEEeeccCCc
Q psy9140 81 IRYYCQTTHKLTGE 94 (114)
Q Consensus 81 g~Y~C~a~n~l~~~ 94 (114)
.|+|+|.|..+.+
T Consensus 197 -nytc~a~ni~~~r 209 (909)
T KOG1480|consen 197 -NYTCEATNIVAKR 209 (909)
T ss_pred -cceeeeehhhccc
Confidence 9999999987764
No 174
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.18 E-value=6.2e-06 Score=46.82 Aligned_cols=64 Identities=23% Similarity=0.403 Sum_probs=42.5
Q ss_pred EEEEeecCCCCCCcceEEEeeCCeeeeeeee--ccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeecc
Q psy9140 25 AVLQCNIPAYNHNLLLIAWLREGVSEARSII--HSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKL 91 (114)
Q Consensus 25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~--~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l 91 (114)
+.|.|.+.+. +...+.|.+++........ .............|.|.+++.+|+| .|.|.+.+..
T Consensus 1 ~~l~C~~~~~--~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGP--PPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSG-TYTCVASNSA 66 (74)
T ss_pred CEEEEEecCC--CCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCc-EEEEEEecCc
Confidence 4689999762 2228999998875421100 0112222334568999999999995 9999999863
No 175
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.16 E-value=4.4e-06 Score=55.80 Aligned_cols=76 Identities=21% Similarity=0.276 Sum_probs=52.0
Q ss_pred eccceeEEEeCCeEEEEeecCCCC-CCcceEEEeeCCeeee---eeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140 12 INTGNTFVLRGNIAVLQCNIPAYN-HNLLLIAWLREGVSEA---RSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT 87 (114)
Q Consensus 12 v~~~d~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd~~~~~---~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a 87 (114)
..|.......|..|.|-|.+.+|- ...+.++|.+|++.-. .+..+.|+-|.+. ..|.|. .+....|..|+|.+
T Consensus 9 ~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~~~~~t~~~~~~dgTys~~--S~L~v~-~~~W~~g~~ytC~V 85 (99)
T cd04986 9 QRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGKEAVQTSAESDQCGCYSVS--SVLPGC-AEEWNKGEPFACTV 85 (99)
T ss_pred ECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCccCcEEcCcccCCCCCEEEE--EEEEeC-HHHhcCCCeEEEEE
Confidence 345444555899999999998876 3334999999976421 1123447778775 577777 44445556899999
Q ss_pred eec
Q psy9140 88 THK 90 (114)
Q Consensus 88 ~n~ 90 (114)
.|.
T Consensus 86 ~H~ 88 (99)
T cd04986 86 THP 88 (99)
T ss_pred ECC
Confidence 986
No 176
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.15 E-value=1.8e-05 Score=51.30 Aligned_cols=66 Identities=21% Similarity=0.445 Sum_probs=39.5
Q ss_pred CCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEE---eecCCCCCCeeeEEEEeec
Q psy9140 22 GNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHI---RDTGMEDSYIRYYCQTTHK 90 (114)
Q Consensus 22 G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I---~~v~~~D~gg~Y~C~a~n~ 90 (114)
|+.+.|.|.+.+|.++.+.++|+|++..+.. ......+....+|...+ -.+..+|. +.|+|++.|.
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~--~~~~~~~~~~~d~ty~~~s~l~v~~~~~-~~ytC~V~H~ 82 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVD--DVESGEILPNGDGTYQLWVTLEVPPEDK-ARYSCRVEHS 82 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcc--cccccceEECCCCeEEEEEEEEECCCCC-CEEEEEEEeC
Confidence 7889999999887544348999999863211 01112222233333222 12333465 5999999985
No 177
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=98.08 E-value=1.8e-05 Score=52.14 Aligned_cols=64 Identities=20% Similarity=0.346 Sum_probs=43.4
Q ss_pred eCCeEEEEeecCCCCCCcceEEEeeCCeeeee------eeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140 21 RGNIAVLQCNIPAYNHNLLLIAWLREGVSEAR------SIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK 90 (114)
Q Consensus 21 ~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~------~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~ 90 (114)
.|..+.|.|.+.+|-+..+.++|+|||..+.- .....|+.|.+. -.|.|.. ++. ..|+|.+.|.
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~--s~L~v~~---~~~-~~ytC~V~H~ 83 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKF--SYLNFTP---EEG-DIYSCIVEHW 83 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEE--EEEEEEC---CCC-CeEEEEEEeC
Confidence 46678999999887655458899999986421 012345666664 3455543 343 5999999995
No 178
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=98.03 E-value=1.2e-05 Score=53.15 Aligned_cols=69 Identities=12% Similarity=0.243 Sum_probs=43.5
Q ss_pred eEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeee-----eeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140 17 TFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEAR-----SIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK 90 (114)
Q Consensus 17 ~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~-----~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~ 90 (114)
.....|+.|+|-|.+.+|-++.+.++|+|||..+.. .....++.|.+. -.|.|. .++.|..|+|.+.|.
T Consensus 11 ~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~--S~L~vt---~~~~~~~ysC~V~H~ 84 (96)
T cd07697 11 KEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTT--SWLTVT---KDSLGKKFRCIYKHE 84 (96)
T ss_pred HHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEE--EEEEEC---chhCCCeEEEEEEEC
Confidence 344467889999999887665558899999986421 111122355553 234444 332334799999994
No 179
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=98.01 E-value=4.6e-05 Score=49.93 Aligned_cols=65 Identities=18% Similarity=0.349 Sum_probs=43.1
Q ss_pred EeCCeEEEEeecCCCCCCcceEEEeeCCeeeeee------eeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140 20 LRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARS------IIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK 90 (114)
Q Consensus 20 ~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~------~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~ 90 (114)
..|..+.|.|.+.+|-++.+.++|+||+..+... ....|+.|.+. -.|.+. .++. ..|+|.+.|.
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~--s~L~~~---~~~~-~~ysC~V~H~ 82 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQIL--VMLETT---PSRG-DTYTCVVEHS 82 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEE--EEEEEc---CCCC-CEEEEEEEeC
Confidence 3689999999998876554488999999864210 01234455553 234433 3343 5999999995
No 180
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.97 E-value=4.2e-05 Score=50.35 Aligned_cols=67 Identities=18% Similarity=0.413 Sum_probs=44.9
Q ss_pred eCCeEEEEeecCCCCCCcceEEEeeCCeeee----eeeec-cCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140 21 RGNIAVLQCNIPAYNHNLLLIAWLREGVSEA----RSIIH-SGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK 90 (114)
Q Consensus 21 ~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~----~~~~~-~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~ 90 (114)
.+..+.|-|.+.+|.++.+.++|+||+.... ++... .|+.|.+. -.|.|..-++... ..|+|.+.|.
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~~~~~~~~~~~~~~dgty~~~--s~L~v~~~~w~~~-~~ytC~V~H~ 86 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNSTSGVKTYPAVLQSGGLYTAS--SQLTVPASEWKGK-ESFYCKVEHP 86 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEECCCcEECCCEeCCCCCEEEE--EEEEEeHHHcCCC-CcEEEEEEeC
Confidence 5677999999988765544899999998510 11122 26777664 3566555443333 4899999995
No 181
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=97.72 E-value=2.9e-05 Score=53.47 Aligned_cols=40 Identities=20% Similarity=0.199 Sum_probs=32.7
Q ss_pred cEEEeecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEeccccc
Q psy9140 68 ALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIALP 111 (114)
Q Consensus 68 ~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~~~ 111 (114)
+|.|++|+.+|+| .|.|.+.+..+. .+...+|.|..|+.+
T Consensus 2 sL~i~~v~~~D~G-~Y~C~~~~~~~~---~~~~~~l~v~~~P~v 41 (139)
T cd05771 2 SLTLPGLTVHDEG-TYICSVSTPPHQ---AQQIIQLSVSEPPRV 41 (139)
T ss_pred eEEECCCCHHHCE-EEEEEEEccCcc---eeeEEEEEEecCCce
Confidence 6999999999995 999999986544 456778888877654
No 182
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.67 E-value=0.00036 Score=44.13 Aligned_cols=66 Identities=21% Similarity=0.409 Sum_probs=44.4
Q ss_pred CCeEEEEeecCC-CCCCcceEEEeeCCeeeee-----eeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccC
Q psy9140 22 GNIAVLQCNIPA-YNHNLLLIAWLREGVSEAR-----SIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLT 92 (114)
Q Consensus 22 G~~AvL~C~~~~-~~~~~~~vsW~kd~~~~~~-----~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~ 92 (114)
|..+.|.|.+.+ ++++ .|+|..++..+.. .....++.|.+. -.|.+. ++.+|.+..++|.|.|..-
T Consensus 14 ~~~~~~~C~s~~~~P~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~--S~l~~~-~~~~~~~~~~~C~~~~~~~ 85 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPP--QITWYLDGGPVVASNTTQSSSPDNGLFTVS--STLTLT-PTREDHGKTLTCRASHPAL 85 (89)
T ss_dssp TEEEEEEEEEEEEBS-E--EEEEEETTCEECEEEEEEEEETTTTTEEEE--EEEEEE-TTGGGTTEEEEEEEEETTC
T ss_pred ceEEEEEEEeCCeECCe--EEEEEECCCceeeeeeeeeeccCCCcceEE--EEEEEE-cChHHCCeEEEEEEECCcc
Confidence 579999998743 3222 8999999987611 112334556554 356665 5667777899999999754
No 183
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.27 E-value=0.0038 Score=40.95 Aligned_cols=63 Identities=17% Similarity=0.281 Sum_probs=47.1
Q ss_pred eeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEc-cCCcEEEeecCCCCCCeeeEEEEe
Q psy9140 16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSIT-TAGALHIRDTGMEDSYIRYYCQTT 88 (114)
Q Consensus 16 d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~-~~G~L~I~~v~~~D~gg~Y~C~a~ 88 (114)
+..++.|++..|.|..++...|.+.|.|.--+... ..... ...+|.+..++..|+| ..+|.+.
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~---------~~~~~~~~ktL~~~qv~~qdSG-~WtC~V~ 71 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKS---------KQILNQDKKTLNLVQLGPNDSG-TWDCIVS 71 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCcc---------ceeccCCccEEEeceeCcccCC-EEEEEEE
Confidence 77999999999999997653332279997755421 11111 2458999999999996 9999996
No 184
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.26 E-value=0.0014 Score=43.21 Aligned_cols=64 Identities=17% Similarity=0.211 Sum_probs=39.2
Q ss_pred CeEEEEeecCCCCCCcceEEEeeCCeeee--eeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140 23 NIAVLQCNIPAYNHNLLLIAWLREGVSEA--RSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK 90 (114)
Q Consensus 23 ~~AvL~C~~~~~~~~~~~vsW~kd~~~~~--~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~ 90 (114)
...++.|.+.+. +|...|+|+++..... .-....+++|.+. ..|.+ -.+.+|.|..|+|++.|.
T Consensus 16 ~~~va~C~s~~g-kPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~--S~l~~-~P~~~d~Gk~ltC~v~h~ 81 (95)
T cd07703 16 PVPVAKCVSANG-RPPARISWSSTLGGNANTTSKENGDGTVTVT--SEYSL-VPTPEANGKEVTCKVEHE 81 (95)
T ss_pred ccEEEEEEcCCC-CCCcEEEEEcCCCCCeeEEEEeCCCCCEEEE--EEEEE-ecCHHHCCCEEEEEEeCc
Confidence 357899998542 2322999999832211 0012234566554 34555 355666678999999996
No 185
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.21 E-value=0.0013 Score=40.78 Aligned_cols=53 Identities=13% Similarity=0.282 Sum_probs=34.1
Q ss_pred EEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140 19 VLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK 90 (114)
Q Consensus 19 v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~ 90 (114)
-+-|.+++|.|-.. .+ .+.|.+++..+ ..+ +..|...|-. ++.| .|+|.+.+.
T Consensus 4 sisGTtVtlTCP~~---~~--~i~W~~n~~~~-----~g~-------~~~~~~~~~~-e~~G-~Y~C~~~~~ 56 (65)
T cd07692 4 SISGTTVTVTCPLS---GD--DIKWKKNDQVS-----QGS-------DEKYLSLNHF-SSSG-YYHCTADNA 56 (65)
T ss_pred EEeccEEEEECCCC---CC--CceEEeCCccC-----CCC-------CceEEeeccC-CCCc-eEEEEeCCC
Confidence 36799999999532 12 48999998632 211 1123333444 7775 999999753
No 186
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.20 E-value=0.0021 Score=42.19 Aligned_cols=65 Identities=18% Similarity=0.225 Sum_probs=38.1
Q ss_pred CeEEEEeecCCCCCCcceEEEeeCCeeee--eeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeecc
Q psy9140 23 NIAVLQCNIPAYNHNLLLIAWLREGVSEA--RSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKL 91 (114)
Q Consensus 23 ~~AvL~C~~~~~~~~~~~vsW~kd~~~~~--~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l 91 (114)
...++.|.+.+. +|...|+|.++-.... .-....++.|.+. -.|.+ ..+.+|.|..|+|++.|..
T Consensus 16 ~~~va~C~s~~g-kP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~--S~l~~-~p~~~d~G~~~tC~v~h~~ 82 (95)
T cd05719 16 PVTVATCVSANG-KPPATISWETTLGGEAETQSKENPNGTVTVT--SEYRL-VPSREANGKELTCVVSHPT 82 (95)
T ss_pred ccEEEEEECCCC-cCCCEEEEEeCCCCcceeEeecCCCCCEEEE--EEEEE-ecCHHHCCCEEEEEEeCcc
Confidence 356899998432 2222999999822111 0012223445443 24555 4566677789999999964
No 187
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=97.08 E-value=0.0027 Score=42.45 Aligned_cols=74 Identities=14% Similarity=0.165 Sum_probs=42.4
Q ss_pred EEEeCCeEEEEeecCCCC-CCcceEEEeeCCeeeeeeeecc--CCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccC
Q psy9140 18 FVLRGNIAVLQCNIPAYN-HNLLLIAWLREGVSEARSIIHS--GGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLT 92 (114)
Q Consensus 18 ~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd~~~~~~~~~~~--~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~ 92 (114)
.+.+|..+.++|.+++.. .+...|.|+|++..+-.-+... +.+=...++-.+.+.- +.+|.|..|+|+|.=.+.
T Consensus 11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~l~ 87 (99)
T cd07689 11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLHID 87 (99)
T ss_pred cccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEeec
Confidence 357999999999996432 2223899999776431000000 0000001112344443 588888899999985554
No 188
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=96.70 E-value=0.0079 Score=41.25 Aligned_cols=76 Identities=11% Similarity=0.192 Sum_probs=49.1
Q ss_pred eccceeEEEeCCeEEEEeecCCCCCCcc-eEEEeeCCeee-e--ee-------eeccCCcEEEcc--CC---cEEEeecC
Q psy9140 12 INTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSE-A--RS-------IIHSGGRYSITT--AG---ALHIRDTG 75 (114)
Q Consensus 12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd~~~~-~--~~-------~~~~~~r~~v~~--~G---~L~I~~v~ 75 (114)
+++.-..+..|+++.|.|.+.++.-..- .++|.|..... . -. .....+||.+.. +. .|+|.+++
T Consensus 3 ~~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~ 82 (115)
T cd05721 3 VQQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLR 82 (115)
T ss_pred eecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCC
Confidence 3455567889999999999844332221 78999953321 0 00 012356776632 22 59999999
Q ss_pred CCCCCeeeEEEEe
Q psy9140 76 MEDSYIRYYCQTT 88 (114)
Q Consensus 76 ~~D~gg~Y~C~a~ 88 (114)
.+|.+ .|.|.-.
T Consensus 83 a~DTa-~Y~Ca~e 94 (115)
T cd05721 83 ANQTD-IYFCKIE 94 (115)
T ss_pred HHHCe-EEEEEee
Confidence 99995 9999543
No 189
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=96.56 E-value=0.0038 Score=48.39 Aligned_cols=47 Identities=19% Similarity=0.248 Sum_probs=40.7
Q ss_pred eEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeecc
Q psy9140 40 LIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKL 91 (114)
Q Consensus 40 ~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l 91 (114)
.-.|.-+++.+ +...+++.|.++|.|.+.|.+++++| .|+|..+.+.
T Consensus 14 ~y~W~GP~g~~----l~gn~~~nIT~TG~L~~~~F~esmSG-~YTCtLsYk~ 60 (271)
T PF07354_consen 14 TYLWTGPNGKP----LSGNSYVNITETGKLMFKNFQESMSG-SYTCTLSYKP 60 (271)
T ss_pred ceEEECCCCcc----cCCCCeEEEccCceEEeeccccccCC-ceEEEEEEEe
Confidence 67999987753 34567999999999999999999996 9999999876
No 190
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.40 E-value=0.015 Score=40.73 Aligned_cols=70 Identities=14% Similarity=0.246 Sum_probs=39.2
Q ss_pred EEEeCCeEEEEeecCCCCC-C-cc-eEEEeeCCeeeeeeeeccCCcE--------EE--ccCCc--EEEeecCCCCCCee
Q psy9140 18 FVLRGNIAVLQCNIPAYNH-N-LL-LIAWLREGVSEARSIIHSGGRY--------SI--TTAGA--LHIRDTGMEDSYIR 82 (114)
Q Consensus 18 ~v~~G~~AvL~C~~~~~~~-~-~~-~vsW~kd~~~~~~~~~~~~~r~--------~v--~~~G~--L~I~~v~~~D~gg~ 82 (114)
...=+++++|+|.+..... + .. .|.|..++..+..- .....+. .+ +-.|. |.+...+.- . |.
T Consensus 23 ~t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~-dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~-Gn 99 (130)
T PF08204_consen 23 YTVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIF-DGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-E-GN 99 (130)
T ss_dssp E-TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEE-ETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH---EE
T ss_pred EEecCCCEEEEeEeccccccccceEEEEEEECCeEEEEE-cCccceecccCccccchhHhhCCCEEEEEcchhcc-c-cc
Confidence 4455789999999943211 1 12 79999999876421 1111122 11 12443 888887766 4 59
Q ss_pred eEEEEeec
Q psy9140 83 YYCQTTHK 90 (114)
Q Consensus 83 Y~C~a~n~ 90 (114)
|+|.+.+.
T Consensus 100 YTCeVt~~ 107 (130)
T PF08204_consen 100 YTCEVTEL 107 (130)
T ss_dssp EEEEEEET
T ss_pred eEEEEEec
Confidence 99999875
No 191
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=96.06 E-value=0.043 Score=36.44 Aligned_cols=69 Identities=16% Similarity=0.204 Sum_probs=43.6
Q ss_pred EEEeCCeEEE-EeecCCCCCCcceEEEeeCCeeee--eeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140 18 FVLRGNIAVL-QCNIPAYNHNLLLIAWLREGVSEA--RSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK 90 (114)
Q Consensus 18 ~v~~G~~AvL-~C~~~~~~~~~~~vsW~kd~~~~~--~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~ 90 (114)
.+.+|+...+ .|.+... +|...|+|+++..... -.....++.|.+.. .|.+.-- .+|.|..++|++.|.
T Consensus 12 ~~~~g~~~~vA~C~sa~g-kPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~S--~~~l~p~-r~d~G~~vtC~V~H~ 83 (97)
T cd07704 12 LIDGGNGTTLAACCAAEG-RPAADVTWETNVYGTSESHSQEHPNGTTTVTS--EYIWVPS-RHANGHPLTCVVSHP 83 (97)
T ss_pred EeecCcceeEEEEEccCC-ccCCEeEEeCCCCCccceeeecCCCCCEEEEE--EEEEEeC-HHHCCcEEEEEEeCc
Confidence 4668899989 9998432 3322999999843221 00123356666653 5666444 444557999999997
No 192
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=96.03 E-value=0.014 Score=46.79 Aligned_cols=23 Identities=13% Similarity=0.303 Sum_probs=19.3
Q ss_pred eEEEEeecCCCCCCcceEEEeeC
Q psy9140 24 IAVLQCNIPAYNHNLLLIAWLRE 46 (114)
Q Consensus 24 ~AvL~C~~~~~~~~~~~vsW~kd 46 (114)
.+.|+|.+.+|-+..+.++|+||
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 57999999888765558899999
No 193
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=95.41 E-value=0.076 Score=33.32 Aligned_cols=48 Identities=19% Similarity=0.328 Sum_probs=31.6
Q ss_pred CeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEee
Q psy9140 23 NIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTH 89 (114)
Q Consensus 23 ~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n 89 (114)
..++|.|... . .|+|+| |..+.. . . +-+|-+..+..+-. |.|.|.+.+
T Consensus 7 ~~V~L~C~~~----t--si~W~k-G~~~~~---~-~-------~~tlnLGs~~~DPR-G~Y~C~~s~ 54 (69)
T cd07691 7 GKVFLKCNGA----T--NITWKK-GKEILE---V-S-------NTLLDLGSRINDPR-GTYSCKESE 54 (69)
T ss_pred ceEEEEecCC----C--cEEEec-Cccccc---c-c-------ccEEeccCcccCCC-cceEecCcc
Confidence 4689999762 2 699999 443311 1 0 34566666666665 699999987
No 194
>KOG4597|consensus
Probab=95.39 E-value=0.029 Score=46.89 Aligned_cols=77 Identities=12% Similarity=0.069 Sum_probs=56.3
Q ss_pred ccceeEEEeCCeEEEEeecCCCCCCcceEEEee---CCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEee
Q psy9140 13 NTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLR---EGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTH 89 (114)
Q Consensus 13 ~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~k---d~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n 89 (114)
-|..+.|-.|.++.+.|.+-+. ++.+|.|.| +++.++-.....-+|-.+...+.|.|-|...+|+| -|+|.|.|
T Consensus 202 cpa~w~vg~wetcS~tCg~~G~--q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~-w~tCs~rc 278 (560)
T KOG4597|consen 202 CPAEWFVGDWETCSSTCGVQGR--QYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAG-WYTCSARC 278 (560)
T ss_pred CcchhhcccchhhcccccccCC--cCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCC-ceeecccc
Confidence 3455678899999999998553 333899987 33333222223345666777889999999999996 99999999
Q ss_pred ccC
Q psy9140 90 KLT 92 (114)
Q Consensus 90 ~l~ 92 (114)
..+
T Consensus 279 g~g 281 (560)
T KOG4597|consen 279 GAG 281 (560)
T ss_pred ccc
Confidence 753
No 195
>PHA02633 hypothetical protein; Provisional
Probab=95.24 E-value=0.022 Score=35.14 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.1
Q ss_pred cCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140 65 TAGALHIRDTGMEDSYIRYYCQTTHK 90 (114)
Q Consensus 65 ~~G~L~I~~v~~~D~gg~Y~C~a~n~ 90 (114)
..+.|.|-++..+|+| .|.|+.+|.
T Consensus 16 ~~~nLwilpa~~sDSG-iYiC~~rn~ 40 (63)
T PHA02633 16 NCNNMLILNPTQSDSG-IYMCITKNE 40 (63)
T ss_pred ccccEEEeccccccCc-EEEEEEcCC
Confidence 3568999999999995 999999985
No 196
>PHA02982 hypothetical protein; Provisional
Probab=94.71 E-value=0.094 Score=39.86 Aligned_cols=74 Identities=9% Similarity=0.204 Sum_probs=50.2
Q ss_pred ceeEEEeCCeEEEEeecCCCCCCcc-eEEEeeCCeeeeee------eecc--------CCcEEEcc---CCcEEEeecCC
Q psy9140 15 GNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARS------IIHS--------GGRYSITT---AGALHIRDTGM 76 (114)
Q Consensus 15 ~d~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd~~~~~~~------~~~~--------~~r~~v~~---~G~L~I~~v~~ 76 (114)
-|..+..|+.+.|+|..|. . +-+ ...|.+++...+.. .++. ...|.+.- +.+|.|.++..
T Consensus 32 ~dv~a~vd~~V~L~C~~~~-~-~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i 109 (251)
T PHA02982 32 ADVNATVDQEVKLQCLFKD-A-DEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDP 109 (251)
T ss_pred hhhhccCCCcEEEEecCCC-c-chhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCc
Confidence 3455778999999999654 2 334 77999987643320 0111 23444432 44799999999
Q ss_pred CCCCeeeEEEEeecc
Q psy9140 77 EDSYIRYYCQTTHKL 91 (114)
Q Consensus 77 ~D~gg~Y~C~a~n~l 91 (114)
+..| =|+|.|+..-
T Consensus 110 ~N~G-CYtc~~ks~~ 123 (251)
T PHA02982 110 QNLG-CFTCEAKDAE 123 (251)
T ss_pred ccCC-ceEEEEecCC
Confidence 9995 9999999854
No 197
>PHA03042 CD47-like protein; Provisional
Probab=92.72 E-value=0.51 Score=36.98 Aligned_cols=64 Identities=16% Similarity=0.218 Sum_probs=38.1
Q ss_pred EEEeCCeEEEEeecCCCCCC--cc-eEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeecc
Q psy9140 18 FVLRGNIAVLQCNIPAYNHN--LL-LIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKL 91 (114)
Q Consensus 18 ~v~~G~~AvL~C~~~~~~~~--~~-~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l 91 (114)
.-.=.++++++|.++..-.. .- .+.|..+++.+.. .++- . ..+|.......- . |.|+|.|.+..
T Consensus 27 yT~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~----~n~t-n---~aSL~~~f~~~l-~-GNYTCEv~~l~ 93 (286)
T PHA03042 27 YTTCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFK----KNNT-N---TSSLKFNFSKNL-S-GNYTCEAINKF 93 (286)
T ss_pred EEecCceEEEEeecCChhhcCccceEEEEEeCCeeEEE----ecCC-c---ceEEEEeccccC-C-CceeEEEeecc
Confidence 34457899999998542111 12 7899999986521 1111 0 023554444333 3 59999999753
No 198
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=92.36 E-value=1.1 Score=29.11 Aligned_cols=70 Identities=14% Similarity=0.256 Sum_probs=46.5
Q ss_pred eeccceeEEEeCCeEEEEeecCCCCC--Ccc-eEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCC-eeeEEE
Q psy9140 11 EINTGNTFVLRGNIAVLQCNIPAYNH--NLL-LIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSY-IRYYCQ 86 (114)
Q Consensus 11 ~v~~~d~~v~~G~~AvL~C~~~~~~~--~~~-~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~g-g~Y~C~ 86 (114)
.+.|+...|-.|..+...|.+...-. ... .|-|.-|++. ....+|...+++...|+=......+ ..|.|.
T Consensus 7 ~i~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~------iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~ 80 (89)
T PF06328_consen 7 VISPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEK------IPGSQYRVINDTVSSVTLPNLNPTGATLFCCK 80 (89)
T ss_dssp EEECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCE------STCGCEEEESTTEEEEEESS--SSEEEEEEEE
T ss_pred EEecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEE------CChhHcceeCCeEEEEEEccCCCCCceEEEEE
Confidence 57788999999999999999843222 223 7899998874 3578999998886554444444432 356665
No 199
>KOG3515|consensus
Probab=92.20 E-value=0.21 Score=43.82 Aligned_cols=83 Identities=17% Similarity=0.224 Sum_probs=56.8
Q ss_pred ceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCCc
Q psy9140 15 GNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGE 94 (114)
Q Consensus 15 ~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~ 94 (114)
-+..+.+|+.+.|.|.+.+.++.. .+.|++.+... . +||....+-.|.-.+... |.++.|.|+|.|..+.-
T Consensus 15 l~~~~~~g~~v~l~C~v~~~pp~~-~~eW~h~~~~~-----~--~~~~~~~~~~~~~~~~~~-~~~~~~~c~a~ns~~~~ 85 (741)
T KOG3515|consen 15 LTVGLRLGEDVPLPCRVNSNPPEI-DVEWYHSTSGE-----H--GRYATIADPTLVTTGDVR-DTVAELNCRAFNSVGMP 85 (741)
T ss_pred CChhhccCCcceeeeecCCCCCCc-ceEEEecCccc-----c--cccccccCCceeeecchh-hhhhhhhhhhcccccCc
Confidence 344678999999999997653322 89999998742 2 788777666666665544 55579999999985542
Q ss_pred EEeCCCeEEEEecc
Q psy9140 95 RKISPPSQVMVSEI 108 (114)
Q Consensus 95 ~~~s~~a~L~V~~~ 108 (114)
...+-.+.|..+
T Consensus 86 --~~~~~~l~v~~~ 97 (741)
T KOG3515|consen 86 --SRCPMILDVDYP 97 (741)
T ss_pred --eecceeeccccC
Confidence 222555555533
No 200
>KOG3515|consensus
Probab=91.47 E-value=0.87 Score=40.09 Aligned_cols=85 Identities=15% Similarity=0.240 Sum_probs=50.8
Q ss_pred EEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccC-------CcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140 18 FVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSG-------GRYSITTAGALHIRDTGMEDSYIRYYCQTTHK 90 (114)
Q Consensus 18 ~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~-------~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~ 90 (114)
....+..+.+.|.+.....|...+.|..+.....+...... +.+. ...-.|.+...+++|.| .|+|.|.|.
T Consensus 108 ~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~-t~~s~l~~~v~Rka~~g-~~tC~A~nr 185 (741)
T KOG3515|consen 108 FQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSY-TEPSLLKQTVSRKADNG-NYTCPANNR 185 (741)
T ss_pred hhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCcee-ccccceeeEEEEecCCc-eeEcccccc
Confidence 35578888999965322222228899998876543221100 1111 11335889999999985 999999997
Q ss_pred cCCcEEeCCCeEEEEe
Q psy9140 91 LTGERKISPPSQVMVS 106 (114)
Q Consensus 91 l~~~~~~s~~a~L~V~ 106 (114)
++-. .+..-.+.+.
T Consensus 186 ~s~~--l~~~~~~~i~ 199 (741)
T KOG3515|consen 186 NSPG--LSFAKQLTII 199 (741)
T ss_pred cCcc--ccccceeEee
Confidence 5532 4444444444
No 201
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=88.66 E-value=0.43 Score=32.42 Aligned_cols=33 Identities=27% Similarity=0.331 Sum_probs=25.6
Q ss_pred CCcEEEcc-CCcEEEeecCCCCCCeeeEEEEeecc
Q psy9140 58 GGRYSITT-AGALHIRDTGMEDSYIRYYCQTTHKL 91 (114)
Q Consensus 58 ~~r~~v~~-~G~L~I~~v~~~D~gg~Y~C~a~n~l 91 (114)
..||...+ +..|.|..++.+|+| .|.-.+++.-
T Consensus 61 n~r~~F~~enlaLlIkaAq~qDSG-~Y~LEvT~~s 94 (108)
T PF11465_consen 61 NNRFNFTSENLALLIKAAQPQDSG-LYCLEVTNES 94 (108)
T ss_dssp HHHEEEETTTTEEEESS-SGGG-E-EEEEEEEETT
T ss_pred cceEeeeccCceEEEeecCcccCc-eEEEEEEcCC
Confidence 46887764 889999999999995 9998888853
No 202
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=87.13 E-value=2.9 Score=34.73 Aligned_cols=78 Identities=13% Similarity=0.236 Sum_probs=53.6
Q ss_pred eccceeEEEe-CCeEEEEeecCCCCCCcc-eEEEeeCCeeeeee------------eeccCCcEEEc---------cCCc
Q psy9140 12 INTGNTFVLR-GNIAVLQCNIPAYNHNLL-LIAWLREGVSEARS------------IIHSGGRYSIT---------TAGA 68 (114)
Q Consensus 12 v~~~d~~v~~-G~~AvL~C~~~~~~~~~~-~vsW~kd~~~~~~~------------~~~~~~r~~v~---------~~G~ 68 (114)
-.|-|...++ |.++-|+|-...-.-+-+ .+.|...+-++-+. ....+.-|.|. -+.+
T Consensus 268 kk~~~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~ST 347 (500)
T PHA02914 268 KKKFDEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNST 347 (500)
T ss_pred ccccceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhce
Confidence 3455555555 999999999743333445 78999887665211 11335566662 3567
Q ss_pred EEEeecCCCCCCeeeEEEEeec
Q psy9140 69 LHIRDTGMEDSYIRYYCQTTHK 90 (114)
Q Consensus 69 L~I~~v~~~D~gg~Y~C~a~n~ 90 (114)
|.|.+|..+.+| =|.|.|...
T Consensus 348 LTIkka~I~N~G-CY~~~a~~g 368 (500)
T PHA02914 348 LTIKKAHINNAG-CYEAQAFMG 368 (500)
T ss_pred EEeeeEEEEcCC-ceEEEEecC
Confidence 999999999995 999999863
No 203
>PHA03052 Hypothetical protein; Provisional
Probab=86.10 E-value=3.2 Score=25.96 Aligned_cols=49 Identities=16% Similarity=0.240 Sum_probs=31.5
Q ss_pred cceeEEEeCCeEEEEeec-CCCCCCcc-eEEEeeCCeeeeeeeeccCCcEEE
Q psy9140 14 TGNTFVLRGNIAVLQCNI-PAYNHNLL-LIAWLREGVSEARSIIHSGGRYSI 63 (114)
Q Consensus 14 ~~d~~v~~G~~AvL~C~~-~~~~~~~~-~vsW~kd~~~~~~~~~~~~~r~~v 63 (114)
|+-..+-.|..+.+.|.+ -+-+.. . .+-|.-++..+.......++|...
T Consensus 4 P~~i~~slGs~ltI~Ckv~lg~g~~-~a~V~W~~N~~~~e~~d~~g~gRI~~ 54 (69)
T PHA03052 4 PEGIVTSLGSNLTITCKVSLRPPTT-DADVFWISNGMYYEEDDDDGDGRISI 54 (69)
T ss_pred CccEEEEccCCceEeEEEEecCCCc-ceEEEEEeCCcEEeccccCCCcceEe
Confidence 444567899999999998 222223 3 889999998652222233556544
No 204
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=84.81 E-value=8.8 Score=25.15 Aligned_cols=85 Identities=16% Similarity=0.217 Sum_probs=51.5
Q ss_pred eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEee
Q psy9140 10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTH 89 (114)
Q Consensus 10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n 89 (114)
..+.|++..|-.|.++.+.|...= ..+..+.|+-.=... ....+..+. .+.++||+. |. .-.|.+.=
T Consensus 6 v~v~P~~~vV~~G~Sv~VNCStsC--~~p~~~GLET~L~k~---~~~~g~~W~-----~f~LsnV~~-ds--~~~C~~~C 72 (91)
T PF03921_consen 6 VRVSPEEPVVPPGGSVWVNCSTSC--PQPEKIGLETSLSKT---ELDSGPQWK-----AFQLSNVTE-DS--SPLCFFNC 72 (91)
T ss_dssp EEEESSEEEEETTEEEEEEEEESS--SS-SEEEEESSSEEE---EEEEETTEE-----EEEEEEE-S-CE--EEEEEEEE
T ss_pred EEEECCccEECCCCCEEEEEcCCC--CCCCcceEEEecCCc---ccCCCCcEE-----EEEEEcccc-CC--eEEEEEEc
Confidence 358899999999999999999831 121144554321110 011122221 478899997 64 67899985
Q ss_pred ccCCcEEeCCCeEEEEecccc
Q psy9140 90 KLTGERKISPPSQVMVSEIAL 110 (114)
Q Consensus 90 ~l~~~~~~s~~a~L~V~~~~~ 110 (114)
. ++ +.+..++|+|..++.
T Consensus 73 ~--g~-Q~~~~~~ItVY~~Pe 90 (91)
T PF03921_consen 73 S--GE-QSSASANITVYKPPE 90 (91)
T ss_dssp T--TE-EEEEEEEEEEEB--S
T ss_pred C--Ce-EEEeEEeeEEeCCCC
Confidence 3 43 456688999987753
No 205
>KOG3611|consensus
Probab=83.05 E-value=2.8 Score=36.99 Aligned_cols=66 Identities=17% Similarity=0.238 Sum_probs=43.5
Q ss_pred EeCCeEEEEeecCCCCCCcceEEEe--eCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140 20 LRGNIAVLQCNIPAYNHNLLLIAWL--REGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK 90 (114)
Q Consensus 20 ~~G~~AvL~C~~~~~~~~~~~vsW~--kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~ 90 (114)
+++...+|.|...+..+ .+.|+ ..+...- .....+.+......|.|.+..++..|.| .|.|.+...
T Consensus 567 ~~~~~~~l~c~~~~~~a---~~~w~~~~~~~~~~-~~~~~~~~~~~~~~G~lll~~~q~~~~G-~y~c~~~e~ 634 (737)
T KOG3611|consen 567 VLAGSEVLRCVPSSNQA---PVVWYHQSTKDGRK-EEVRQRDVVSRTDEGGLVLLSVQKLDGG-TYPCYADES 634 (737)
T ss_pred cccccceeecccccccc---ceeeEeeccCcccc-ceeccCcceeecccCceeEEEEeeccCc-ccccccccC
Confidence 34446799998644322 46886 2221110 0234456666666799999999999985 999999964
No 206
>PHA03282 envelope glycoprotein E; Provisional
Probab=82.10 E-value=2.5 Score=35.58 Aligned_cols=46 Identities=17% Similarity=0.210 Sum_probs=32.4
Q ss_pred CCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140 58 GGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVS 106 (114)
Q Consensus 58 ~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~ 106 (114)
+.|..+. ||+|.|.+++.+|+| .|+-.+...-+.+ .......|.|.
T Consensus 116 ~~rvs~~-n~tl~l~~a~~~DsG-~Y~L~~~~~~~~~-~~~~~v~l~V~ 161 (540)
T PHA03282 116 PPRVAVV-NGTLVLREARETDSG-MYVLSVSRAPNST-AARAVVFLVVG 161 (540)
T ss_pred CcceeEe-cceEEEeeccccCCc-eEEEEecCCCCch-hheEEEEEEec
Confidence 5677666 899999999999995 9999876554332 23334455554
No 207
>PHA03269 envelope glycoprotein C; Provisional
Probab=76.16 E-value=13 Score=31.58 Aligned_cols=98 Identities=15% Similarity=0.141 Sum_probs=57.7
Q ss_pred eeccceeEEEeCCeEEEEeecCCCCCCcc-eEEEeeCCeeeeeeeeccCCcEEEccCCc-EEEeecCC-CCCCeee----
Q psy9140 11 EINTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARSIIHSGGRYSITTAGA-LHIRDTGM-EDSYIRY---- 83 (114)
Q Consensus 11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd~~~~~~~~~~~~~r~~v~~~G~-L~I~~v~~-~D~gg~Y---- 83 (114)
.+.+.-..|++|+.=-=-|.+-.|-.+.. .+.|++|+..+.. ......+.+..+|. -.++-++. ++.++.|
T Consensus 331 sVsV~p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~--~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPs 408 (566)
T PHA03269 331 NITVIGDPVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGK--NFITDAIKENADGLFSSVSALHIPAQKNADYPPPA 408 (566)
T ss_pred CccccCCccccCCCceEEEEeeeecCCCceEEEEEeCCcccCc--cccccceeecCCCceEEEEEEeccCccccCCCCCC
Confidence 45555567889999888999855554555 8999999886521 11123444455563 23444434 3433455
Q ss_pred -EEEEeeccCCc--EEeCCCeEEEEecccc
Q psy9140 84 -YCQTTHKLTGE--RKISPPSQVMVSEIAL 110 (114)
Q Consensus 84 -~C~a~n~l~~~--~~~s~~a~L~V~~~~~ 110 (114)
+|.+.=.-++. +|.+..+.=.|..++.
T Consensus 409 LrCeV~W~RDsVS~tRfnAaatP~VY~~Pt 438 (566)
T PHA03269 409 IQCNVLWIRDGVSHMKYSAAVTPDVYPFPN 438 (566)
T ss_pred ceEEEEEccCCchheecccccCCccccCCe
Confidence 99998443332 3445555555555443
No 208
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=74.82 E-value=27 Score=24.68 Aligned_cols=84 Identities=13% Similarity=0.305 Sum_probs=37.5
Q ss_pred ceeeccc--eeEEEeCCeEEEEeec--CCCCCCcc-eEEEee-CCeeeee----eeeccCCcEEEccCCc--EEEeecCC
Q psy9140 9 DYEINTG--NTFVLRGNIAVLQCNI--PAYNHNLL-LIAWLR-EGVSEAR----SIIHSGGRYSITTAGA--LHIRDTGM 76 (114)
Q Consensus 9 ~~~v~~~--d~~v~~G~~AvL~C~~--~~~~~~~~-~vsW~k-d~~~~~~----~~~~~~~r~~v~~~G~--L~I~~v~~ 76 (114)
||++..+ -..+..|++|-++|.+ .|.-++.. .|.|.. ||...+. ......+||-+. .+. |+=++..
T Consensus 32 pF~v~tmPVpk~I~~GeTvEIR~~l~reG~y~~t~Y~iRYFQ~dGkG~L~~~~g~~~~pND~Y~L~-~~~FRLYYTS~s- 109 (137)
T PF12988_consen 32 PFTVETMPVPKKIKKGETVEIRCELKREGNYADTRYTIRYFQPDGKGTLRMDDGTVLLPNDRYPLE-KEVFRLYYTSRS- 109 (137)
T ss_dssp SEEEEE----SS--TTEEEEEEEEEEESS--SS---EEEEE-SSS-EEEEETTS-EE-TTSEEE-S--SEEEEEEEE-S-
T ss_pred CcEEEEeccccccCCCCEEEEEEEEecCceecccEEEEEEEeecCCEEEEecCCcEeccccceecC-cCEEEEEEecCC-
Confidence 3554433 3368899999999998 44445544 788876 3433221 012344555443 343 4444444
Q ss_pred CCCCeeeEEEEeeccCCcE
Q psy9140 77 EDSYIRYYCQTTHKLTGER 95 (114)
Q Consensus 77 ~D~gg~Y~C~a~n~l~~~~ 95 (114)
+|+ ....=.+.+..+.+.
T Consensus 110 ~~~-q~idv~veDnfGq~~ 127 (137)
T PF12988_consen 110 DDQ-QTIDVYVEDNFGQEQ 127 (137)
T ss_dssp SS--EEEEEEEEETTTEEE
T ss_pred CCC-ceeEEEEEeCCCCEE
Confidence 232 255555555555443
No 209
>PHA03270 envelope glycoprotein C; Provisional
Probab=69.97 E-value=23 Score=29.65 Aligned_cols=98 Identities=13% Similarity=0.043 Sum_probs=62.6
Q ss_pred ccceeEEEeCCeEEEEeecCCCCCCcc-eEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCe-----eeEEE
Q psy9140 13 NTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYI-----RYYCQ 86 (114)
Q Consensus 13 ~~~d~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg-----~Y~C~ 86 (114)
...--.+++|+.=-=-|.+-.|-.+.. .+.|++|+..+..+.. .+.+.....+|--.++-++.++.++ +.+|.
T Consensus 225 sv~~~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~~~~-i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~ 303 (466)
T PHA03270 225 SIRPHAVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFAPER-VRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCE 303 (466)
T ss_pred cccCCccccCCCceEEEEeeeecCCCceEEEEEeCCccccCcce-eeeeeEecCCCeeEEEEEeccccccCCCCCCceEE
Confidence 333446788998888999855544545 8999999997643221 2344555567756777777777642 66899
Q ss_pred EeeccCC--cEEeCCCeEEEEeccccc
Q psy9140 87 TTHKLTG--ERKISPPSQVMVSEIALP 111 (114)
Q Consensus 87 a~n~l~~--~~~~s~~a~L~V~~~~~~ 111 (114)
+.=.-++ ..|.++.+.=.|..++.|
T Consensus 304 v~W~rd~vS~sR~nAa~~P~VY~~P~I 330 (466)
T PHA03270 304 FTWHRDSVSFSRRNATGAPTVLPRPTI 330 (466)
T ss_pred EEEccCCccceeecccccCccccCCeE
Confidence 9844443 245566666666655543
No 210
>PHA03112 IL-18 binding protein; Provisional
Probab=65.13 E-value=29 Score=24.60 Aligned_cols=70 Identities=17% Similarity=0.256 Sum_probs=38.9
Q ss_pred eCCeEEEEeecCCCCCCcceEEEeeCC-eeee--eee------eccCCcEE---EccCCcEEEeecCCCCCCeeeEEEEe
Q psy9140 21 RGNIAVLQCNIPAYNHNLLLIAWLREG-VSEA--RSI------IHSGGRYS---ITTAGALHIRDTGMEDSYIRYYCQTT 88 (114)
Q Consensus 21 ~G~~AvL~C~~~~~~~~~~~vsW~kd~-~~~~--~~~------~~~~~r~~---v~~~G~L~I~~v~~~D~gg~Y~C~a~ 88 (114)
+|++++|+|.+-++-+.+.-+-|.+++ +.++ .+. ...+.+-. -.+.-.|.+-+++.+=.--..+|+-.
T Consensus 37 ~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TCVL~ 116 (141)
T PHA03112 37 ETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTCVLM 116 (141)
T ss_pred CCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEEEEe
Confidence 599999999996554433378999776 2221 000 00011111 12233577788776522237888877
Q ss_pred ec
Q psy9140 89 HK 90 (114)
Q Consensus 89 n~ 90 (114)
..
T Consensus 117 D~ 118 (141)
T PHA03112 117 DL 118 (141)
T ss_pred cC
Confidence 65
No 211
>PHA03271 envelope glycoprotein C; Provisional
Probab=64.58 E-value=32 Score=28.88 Aligned_cols=97 Identities=13% Similarity=0.114 Sum_probs=56.0
Q ss_pred cceeEEEeCCeEEEEeecCCCCCCcc-eEEEeeCCeeeeeeeeccCCcEEE--ccCCcEEEeecCCCCCC----eeeEEE
Q psy9140 14 TGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARSIIHSGGRYSI--TTAGALHIRDTGMEDSY----IRYYCQ 86 (114)
Q Consensus 14 ~~d~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd~~~~~~~~~~~~~r~~v--~~~G~L~I~~v~~~D~g----g~Y~C~ 86 (114)
+.-..+++|+.=-=-|.+-.|-++.. .+.|++||....++ ...+.++.. ...|--.++-+..++++ -.-+|.
T Consensus 252 V~a~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~-~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCe 330 (490)
T PHA03271 252 VLAPPVLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATPR-KDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCL 330 (490)
T ss_pred ccCCccccCCCceEEEEeeeecCCCceEEEEEeCCccccCc-cccceeEEEecCCCceeEEEEEEcccccCCCCCCceEE
Confidence 33446789998888999855555555 89999998865332 233444422 22343444555444442 178999
Q ss_pred EeeccC-CcEEeCCCeEEEEeccccc
Q psy9140 87 TTHKLT-GERKISPPSQVMVSEIALP 111 (114)
Q Consensus 87 a~n~l~-~~~~~s~~a~L~V~~~~~~ 111 (114)
+.=.-+ ...+.++++.=.|..++.+
T Consensus 331 V~W~rd~v~s~rnAaatP~VY~~P~I 356 (490)
T PHA03271 331 VAWKQGDMISTTNATAIPTVYHHPRI 356 (490)
T ss_pred EEEccCCceeeeecccCCccccCCeE
Confidence 984433 3333455665555555443
No 212
>PHA03270 envelope glycoprotein C; Provisional
Probab=63.92 E-value=88 Score=26.32 Aligned_cols=38 Identities=13% Similarity=0.104 Sum_probs=25.8
Q ss_pred EEEeecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEecc
Q psy9140 69 LHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEI 108 (114)
Q Consensus 69 L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~ 108 (114)
|.|..++.+.+| .|+....+.-+ ....+...++....+
T Consensus 184 L~I~slt~aTeG-vY~Wr~~~~~~-~~~~~~~VtV~~yr~ 221 (466)
T PHA03270 184 LVIQELTLATQG-MYYWARGPADR-PHRYGTWTRVRMFRR 221 (466)
T ss_pred EEEEEcccccce-EEEEEEecCCC-ceeeeeEEEEEEecC
Confidence 999999999995 99999777543 323333444444433
No 213
>PHA03273 envelope glycoprotein C; Provisional
Probab=59.03 E-value=48 Score=28.03 Aligned_cols=99 Identities=11% Similarity=0.072 Sum_probs=57.2
Q ss_pred eccceeEEEeCCeEEEEeecCCCCCCcc-eEEEeeCCeeeeeeeeccCCcEEEccCCc-EEEeecCCCCCCe-----eeE
Q psy9140 12 INTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARSIIHSGGRYSITTAGA-LHIRDTGMEDSYI-----RYY 84 (114)
Q Consensus 12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd~~~~~~~~~~~~~r~~v~~~G~-L~I~~v~~~D~gg-----~Y~ 84 (114)
+.+.-..+++|+.=-=-|.+-.|-++.. .+.|++|+..+.+.. .....+.+..+|- ..++=++.++.++ ..+
T Consensus 240 vsv~~~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~~~~-~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lr 318 (486)
T PHA03273 240 VDLSVHPSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVDFTK-YVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLR 318 (486)
T ss_pred ccccCCccccCCCceEEEEeeeecCCCceEEEEEeCCeeccccc-cceeeEEEecCCceEEEEEEeccCcccCCCCCCce
Confidence 3344456889998888999855544445 899999999753111 1123344444443 4555554555433 679
Q ss_pred EEEeeccCC--cEEeCCCeEEEEeccccc
Q psy9140 85 CQTTHKLTG--ERKISPPSQVMVSEIALP 111 (114)
Q Consensus 85 C~a~n~l~~--~~~~s~~a~L~V~~~~~~ 111 (114)
|.+.=.-++ .+|.++.+.=.|..++.|
T Consensus 319 C~v~W~rd~vS~~RfsAt~~P~Vy~~P~I 347 (486)
T PHA03273 319 CSIEWYRDEVSFARIAKAGTPSVFVAPTV 347 (486)
T ss_pred EEEEEccCCcceeeccccccCccccCCeE
Confidence 999843332 234455555555554443
No 214
>PHA03273 envelope glycoprotein C; Provisional
Probab=56.11 E-value=1.1e+02 Score=25.91 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=18.6
Q ss_pred EEEeecCCCCCCeeeEEEEeec
Q psy9140 69 LHIRDTGMEDSYIRYYCQTTHK 90 (114)
Q Consensus 69 L~I~~v~~~D~gg~Y~C~a~n~ 90 (114)
|.|..++..++| .|.....+.
T Consensus 200 LtI~sltaaTeG-vYtWr~~~~ 220 (486)
T PHA03273 200 LTIKSVDWRTAG-VYVWSLYAK 220 (486)
T ss_pred eEEEecchhhce-EEEEEEecC
Confidence 999999999995 999887664
No 215
>PHA03269 envelope glycoprotein C; Provisional
Probab=54.79 E-value=26 Score=29.88 Aligned_cols=51 Identities=18% Similarity=0.165 Sum_probs=31.4
Q ss_pred CCcEEEcc---CC--cEEEeecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEeccc
Q psy9140 58 GGRYSITT---AG--ALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIA 109 (114)
Q Consensus 58 ~~r~~v~~---~G--~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~ 109 (114)
+++|.+-. .| .|.|.+++..++| .|..+..+.-.+....+...++.+..++
T Consensus 275 ~~~yi~p~~a~p~~~pL~I~sltaATeG-vY~Wrv~~~~n~t~~~~~~VtV~~yr~P 330 (566)
T PHA03269 275 KEKYIIPDRKTTSDFSLHILSLDASTEG-TYIWRVIHTANKNVINEHHITVMSYKRP 330 (566)
T ss_pred CceEEeccCCCCCccceEEeecccccCc-eEEEEEecCCCCceeeeeEEEEEEecCC
Confidence 46776631 11 3999999999995 9999987643333223334444444333
No 216
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=53.84 E-value=50 Score=20.29 Aligned_cols=66 Identities=18% Similarity=0.265 Sum_probs=44.3
Q ss_pred ceeeccceeEEEeCCeEEEEeec-CCCCCCcc-eEEEeeCCeeeeeeeeccCCc-EEEccCCcEEEeecCC
Q psy9140 9 DYEINTGNTFVLRGNIAVLQCNI-PAYNHNLL-LIAWLREGVSEARSIIHSGGR-YSITTAGALHIRDTGM 76 (114)
Q Consensus 9 ~~~v~~~d~~v~~G~~AvL~C~~-~~~~~~~~-~vsW~kd~~~~~~~~~~~~~r-~~v~~~G~L~I~~v~~ 76 (114)
..++.|....+..|.+..|.-.+ |....+ . .+.|...+..+... ...+++ ..-...|.-.|.-...
T Consensus 4 ~i~i~p~~~~l~~G~~~~l~a~~~~~~~~~-~~~v~w~Ssn~~vatv-v~~~G~~vta~~~G~a~Ita~~~ 72 (81)
T smart00635 4 SVTVTPTTASVKKGLTLQLTATVTPSSAKV-TGKVTWTSSNPSVATV-VNASGLVVTAVAAGTATITATSG 72 (81)
T ss_pred EEEEeCCeeEEeCCCeEEEEEEEECCCCCc-cceEEEEECCCcEEEE-ECCCCCEEEEEeceEEEEEEEEC
Confidence 56788988999999999999986 444332 4 88999988765320 244565 5555556655554333
No 217
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=52.28 E-value=86 Score=23.67 Aligned_cols=69 Identities=13% Similarity=0.186 Sum_probs=36.0
Q ss_pred eEEEeeCCeeeeeeeeccCCcEEEccCC------cEEEeecCCCCCCeeeEEEEeeccC--CcEEeCCCeEEEEecccc
Q psy9140 40 LIAWLREGVSEARSIIHSGGRYSITTAG------ALHIRDTGMEDSYIRYYCQTTHKLT--GERKISPPSQVMVSEIAL 110 (114)
Q Consensus 40 ~vsW~kd~~~~~~~~~~~~~r~~v~~~G------~L~I~~v~~~D~gg~Y~C~a~n~l~--~~~~~s~~a~L~V~~~~~ 110 (114)
...|++|+..+. + -....++.+..+| .|.|......+---..+|.+.=.-+ .+++.+..++=.|..++.
T Consensus 8 ~~~Wf~dg~~v~-~-~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~ 84 (211)
T PF02124_consen 8 RFRWFEDGNPVE-P-RFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPR 84 (211)
T ss_pred EEEEEECCEeCC-c-cceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCE
Confidence 789999998542 1 2223344444556 3444222222222378999884333 234445555555554443
No 218
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=50.86 E-value=1.5e+02 Score=24.94 Aligned_cols=22 Identities=9% Similarity=0.148 Sum_probs=18.4
Q ss_pred cEEEeecCCCCCCeeeEEEEeec
Q psy9140 68 ALHIRDTGMEDSYIRYYCQTTHK 90 (114)
Q Consensus 68 ~L~I~~v~~~D~gg~Y~C~a~n~ 90 (114)
...+.|++..|+| .|+|+..-.
T Consensus 82 sf~~~Nvs~sdEG-rYrCIFYLn 103 (500)
T PHA02914 82 SFIEENIGEHEDG-DFKCIFYLG 103 (500)
T ss_pred EEEecCcccccCC-cEEEEEEeC
Confidence 4778889999995 999998743
No 219
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=50.61 E-value=62 Score=20.38 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=17.8
Q ss_pred CCcEEEeecCCCCCCeeeEEEEe
Q psy9140 66 AGALHIRDTGMEDSYIRYYCQTT 88 (114)
Q Consensus 66 ~G~L~I~~v~~~D~gg~Y~C~a~ 88 (114)
...+.....+.+|+| ...|.|+
T Consensus 42 ~~~~~~~~~~~~d~G-~w~C~a~ 63 (80)
T PF05790_consen 42 KKLVSTFTPTTEDSG-TWVCTAS 63 (80)
T ss_dssp SSEEEEESBTCGGSE-EEEEEEE
T ss_pred ceEEEEecCCCCCCE-EEEEEEc
Confidence 345677788899996 9999995
No 220
>PF04296 DUF448: Protein of unknown function (DUF448); InterPro: IPR007393 This entry represents a group of uncharacterised proteins. Some member sequences retain zinc-binding residues. The structure of the hypothetical cytosolic protein SP0554 from Streptococcus pneumoniae revealed an alpha+beta fold that could have evolved from a glucocorticoid receptor-like zinc finger domain [].; PDB: 1G2R_A.
Probab=47.50 E-value=24 Score=22.03 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=18.2
Q ss_pred CcEEEccCCcEEEeecCCCCCCeeeEEEEe
Q psy9140 59 GRYSITTAGALHIRDTGMEDSYIRYYCQTT 88 (114)
Q Consensus 59 ~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~ 88 (114)
-||...++|.+.+---+.....|.|.|.-.
T Consensus 17 lR~v~~~~~~i~~D~~~k~~GRGaYvc~~~ 46 (78)
T PF04296_consen 17 LRFVRTPDGEIVPDPSGKLPGRGAYVCPDP 46 (78)
T ss_dssp EEEEE-TTS-EEEETTS---SEEEEEES-H
T ss_pred EEEEEeCCCEEEECCCCCCCCCeEEEcCCH
Confidence 388888888877776666666679999653
No 221
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=46.70 E-value=1.2e+02 Score=24.04 Aligned_cols=84 Identities=15% Similarity=0.138 Sum_probs=43.1
Q ss_pred CeEEEEeecCCCCCCcc-eEEEeeCCeeeeeeeeccCCcEEEc--cCCcEEEeecCCCCCCeeeEEEEeeccCCcEEeCC
Q psy9140 23 NIAVLQCNIPAYNHNLL-LIAWLREGVSEARSIIHSGGRYSIT--TAGALHIRDTGMEDSYIRYYCQTTHKLTGERKISP 99 (114)
Q Consensus 23 ~~AvL~C~~~~~~~~~~-~vsW~kd~~~~~~~~~~~~~r~~v~--~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~ 99 (114)
.+++=+|.+|..+.|.- .+.|-.|...+.+. .+.+...+. -..+|.+-.-..+-. |.+.|...--.--+.+.|+
T Consensus 30 ~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a--~S~G~i~vfdl~g~~lf~I~p~~~~~-~d~~~Aiagl~Fl~~~~s~ 106 (282)
T PF15492_consen 30 SSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYA--ESTGTIRVFDLMGSELFVIPPAMSFP-GDLSDAIAGLIFLEYKKSA 106 (282)
T ss_pred hheeEEEecCCCCCchheEEEECCCCcEEEEE--cCCCeEEEEecccceeEEcCcccccC-CccccceeeeEeecccccc
Confidence 45667899977665555 89999998876543 344444432 123344333322223 3665544422111222233
Q ss_pred --CeEEEEeccc
Q psy9140 100 --PSQVMVSEIA 109 (114)
Q Consensus 100 --~a~L~V~~~~ 109 (114)
.+.|.|-...
T Consensus 107 ~ws~ELlvi~Y~ 118 (282)
T PF15492_consen 107 QWSYELLVINYR 118 (282)
T ss_pred ccceeEEEEecc
Confidence 5566655443
No 222
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=45.66 E-value=21 Score=24.21 Aligned_cols=44 Identities=14% Similarity=0.179 Sum_probs=31.1
Q ss_pred eEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccC
Q psy9140 40 LIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLT 92 (114)
Q Consensus 40 ~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~ 92 (114)
..+|+||+. ..+.||.+ |=..|.|++|...=-+ .=.|.+....+
T Consensus 30 ~L~wykd~e-------eKE~kyil-pLdnLk~Rdve~gf~s-k~~~FeLfnpd 73 (110)
T cd01256 30 SLSWYKDDE-------EKEKKYML-PLDGLKLRDIEGGFMS-RNHKFALFYPD 73 (110)
T ss_pred eeeeecccc-------ccccccee-eccccEEEeecccccC-CCcEEEEEcCc
Confidence 679999986 46788855 5578999999864343 34777775433
No 223
>PF05083 LST1: LST-1 protein; InterPro: IPR007775 B144/LST1 is a gene encoded in the human major histocompatibility complex that produces multiple forms of alternatively spliced mRNA and encodes peptides fewer than 100 amino acids in length. B144/LST1 is strongly expressed in dendritic cells. Transfection of B144/LST1 into a variety of cells induces morphologic changes including the production of long, thin filopodia []. A possible role in modulating immune responses. Induces morphological changes including production of filopodia and microspikes when overexpressed in a variety of cell types and may be involved in dendritic cell maturation. Isoform 1 and isoform 2 have an inhibitory effect on lymphocyte proliferation [, ]. ; GO: 0000902 cell morphogenesis, 0006955 immune response, 0016020 membrane
Probab=45.47 E-value=16 Score=22.99 Aligned_cols=16 Identities=31% Similarity=0.470 Sum_probs=13.6
Q ss_pred CCCCCeeeEEEEeecc
Q psy9140 76 MEDSYIRYYCQTTHKL 91 (114)
Q Consensus 76 ~~D~gg~Y~C~a~n~l 91 (114)
+||-...|-|+|+|+-
T Consensus 58 kED~stDYAcIa~~kp 73 (74)
T PF05083_consen 58 KEDPSTDYACIAKNKP 73 (74)
T ss_pred ccCCCcCeeeeeccCC
Confidence 7787779999999974
No 224
>cd00279 YlxR Ylxr homologs; group of conserved hypothetical bacterial proteins of unknown function; structure revealed putative RNA binding cleft; proteins are encoded by an operon that includes other proteins involved in transcription and/or translation
Probab=38.35 E-value=48 Score=20.91 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=19.4
Q ss_pred cEEEccCCcEEEeecCCCCCCeeeEEEEe
Q psy9140 60 RYSITTAGALHIRDTGMEDSYIRYYCQTT 88 (114)
Q Consensus 60 r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~ 88 (114)
||...++|.+.+---......|-|.|.-.
T Consensus 19 R~v~~~~g~i~~D~~~k~~GRGaYvc~~~ 47 (79)
T cd00279 19 RFVAGPEGEVVPDPTGKLPGRGAYVCADR 47 (79)
T ss_pred EEEEcCCCeEEECCCCCCCCCeEEEcCCH
Confidence 67776777776665555555579999653
No 225
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=34.51 E-value=1.6e+02 Score=20.39 Aligned_cols=49 Identities=14% Similarity=0.171 Sum_probs=31.4
Q ss_pred eEEEeeCCeeee-e--eeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCCc
Q psy9140 40 LIAWLREGVSEA-R--SIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGE 94 (114)
Q Consensus 40 ~vsW~kd~~~~~-~--~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~ 94 (114)
.+.|.+++..|. . ++...+..+ ++.+++++--+.+|+|.+.+.-...|+
T Consensus 81 ~v~~~~~~~~i~I~f~~PV~pG~tv------~V~l~~v~NP~~~G~Y~f~v~a~p~G~ 132 (146)
T PF10989_consen 81 EVEWDEDGRTITITFDEPVPPGTTV------TVVLSPVRNPRSGGTYQFNVTAFPPGD 132 (146)
T ss_pred EEEEcCCCCEEEEEeCCCCCCCCEE------EEEEEeeeCCCCCCeEEEEEEEECCCC
Confidence 689988877662 1 122333333 366778877777779988887555554
No 226
>KOG1480|consensus
Probab=33.34 E-value=55 Score=29.59 Aligned_cols=79 Identities=15% Similarity=0.302 Sum_probs=48.4
Q ss_pred cceeeccceeEEEeCCeEEEEeecCCCCCCcc--eEEEeeCCeeee-eeeeccCCcEEEccCCcEEEeecCCCCCCe--e
Q psy9140 8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLL--LIAWLREGVSEA-RSIIHSGGRYSITTAGALHIRDTGMEDSYI--R 82 (114)
Q Consensus 8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~--~vsW~kd~~~~~-~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg--~ 82 (114)
+.|...|.+..+++|...-|+|.+.++.+-+. .-.|..+.+... --.....++-...+ ...|+--+.++.+| .
T Consensus 25 ~~~~~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~--si~Isr~~v~~~~~~~d 102 (909)
T KOG1480|consen 25 PHFTTEPKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREV--SIDISRQQVETSGGPED 102 (909)
T ss_pred ceeeecCCccceecCCCccceecCCcccccccccChhhhcCccceeeeccCcccceeEEee--eeeeehhhhhcccCccc
Confidence 56899999999999999999999976654333 557877654321 01122334444443 34555555555433 5
Q ss_pred eEEEEe
Q psy9140 83 YYCQTT 88 (114)
Q Consensus 83 Y~C~a~ 88 (114)
|.|+-.
T Consensus 103 ~~cQc~ 108 (909)
T KOG1480|consen 103 YWCQCV 108 (909)
T ss_pred eeeeee
Confidence 666543
No 227
>PHA03376 BARF1; Provisional
Probab=33.02 E-value=76 Score=24.03 Aligned_cols=65 Identities=15% Similarity=0.255 Sum_probs=38.3
Q ss_pred CCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEee---cCCCCCCeeeEEEEeec
Q psy9140 22 GNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRD---TGMEDSYIRYYCQTTHK 90 (114)
Q Consensus 22 G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~---v~~~D~gg~Y~C~a~n~ 90 (114)
=+.-.+.|..-+|++| .++|+.+++...-|.. ..+-..-..+|+|.+.- ..+.=.. --+|+.+|.
T Consensus 139 ~~~~~i~C~sggfP~P--~~~Wle~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 206 (221)
T PHA03376 139 FSVLTVTCTVNAFPHP--HVQWLMPEGVEPAPTA-ANGGVMKEKDGSLSVAVDLSLPKPWHL-PVTCVGKND 206 (221)
T ss_pred CCeeEEEEecCCcCCc--hheeccccCCCCCCcc-ccCceeecCCCcEEEEEEeecCCCccC-ceEEeccCc
Confidence 3556789998888877 6899998765422222 23334344567765431 1122222 568888874
No 228
>PHA03286 envelope glycoprotein E; Provisional
Probab=30.39 E-value=62 Score=27.36 Aligned_cols=21 Identities=10% Similarity=0.115 Sum_probs=19.3
Q ss_pred cEEEeecCCCCCCeeeEEEEee
Q psy9140 68 ALHIRDTGMEDSYIRYYCQTTH 89 (114)
Q Consensus 68 ~L~I~~v~~~D~gg~Y~C~a~n 89 (114)
+|.+.|++.+|+| .|.|++.-
T Consensus 308 nL~f~nA~~s~SG-LYVfVl~y 328 (492)
T PHA03286 308 SFRLANAQPTDAG-LYVVVALY 328 (492)
T ss_pred ceeecCCCcccCc-eEEEEEEE
Confidence 6999999999995 99999984
No 229
>PHA03283 envelope glycoprotein E; Provisional
Probab=30.01 E-value=64 Score=27.67 Aligned_cols=21 Identities=14% Similarity=0.026 Sum_probs=19.2
Q ss_pred cEEEeecCCCCCCeeeEEEEee
Q psy9140 68 ALHIRDTGMEDSYIRYYCQTTH 89 (114)
Q Consensus 68 ~L~I~~v~~~D~gg~Y~C~a~n 89 (114)
+|+..|+..+++| .|.|++.-
T Consensus 316 ~L~f~nap~~~SG-LYVfVv~y 336 (542)
T PHA03283 316 DLLFKNAPASASG-LYVFVLLY 336 (542)
T ss_pred ceEeccCCcccCc-eEEEEEEE
Confidence 7999999999995 99999984
No 230
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=29.26 E-value=18 Score=30.01 Aligned_cols=40 Identities=25% Similarity=0.168 Sum_probs=0.0
Q ss_pred cCCcEEEeecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEec
Q psy9140 65 TAGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSE 107 (114)
Q Consensus 65 ~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~ 107 (114)
..|.|.|.|++.+|+| .|+-...|.- +..+.+ ...|.|+.
T Consensus 87 ~~~~l~i~~a~~~~~G-vY~l~~~~~~-~~~~~~-~~~v~v~~ 126 (439)
T PF02480_consen 87 NKGGLSILNATEQDSG-VYTLYVRNDS-GWAHQS-VVFVTVKG 126 (439)
T ss_dssp -------------------------------------------
T ss_pred cCCceEEeccccccCe-eEEEEecCCC-CceEEE-EEEEEEcC
Confidence 3588999999999995 9998888653 232222 34555554
No 231
>PHA03240 envelope glycoprotein M; Provisional
Probab=28.89 E-value=1.5e+02 Score=22.75 Aligned_cols=79 Identities=13% Similarity=0.176 Sum_probs=44.4
Q ss_pred eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEee-------CCeeee-----e-eeecc----------CCc--EEEc
Q psy9140 10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLR-------EGVSEA-----R-SIIHS----------GGR--YSIT 64 (114)
Q Consensus 10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~k-------d~~~~~-----~-~~~~~----------~~r--~~v~ 64 (114)
|.--=+...+.+|..+.|.=. +.. .+.-.+.|.+ +.+... + |+-+. ..| |.-
T Consensus 26 ~seACievt~r~G~nVTLga~-~~l-hpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C- 102 (258)
T PHA03240 26 FSEACEEHTTREGDPLLLGGG-HGL-GAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYEC- 102 (258)
T ss_pred hhhhceecccccCCceeeCCc-ccC-CCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEe-
Confidence 333334556778999999533 222 1111889999 322211 1 10000 122 333
Q ss_pred cCCcEEEeecCCCCCCeeeEEEEeeccCC
Q psy9140 65 TAGALHIRDTGMEDSYIRYYCQTTHKLTG 93 (114)
Q Consensus 65 ~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~ 93 (114)
-|.+|.|-+|..+|.| .| |+-++..-+
T Consensus 103 ~NstL~i~~vn~sd~~-nY-cr~k~~~~g 129 (258)
T PHA03240 103 HNSTLIIAHLNLSDAG-EY-CRKKCPPKG 129 (258)
T ss_pred ccceEEEEEEeecCcc-hh-hhccCCCCC
Confidence 2789999999999995 77 666655444
No 232
>PHA03282 envelope glycoprotein E; Provisional
Probab=25.72 E-value=65 Score=27.45 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=20.7
Q ss_pred cCC-cEEEeecCCCCCCeeeEEEEee
Q psy9140 65 TAG-ALHIRDTGMEDSYIRYYCQTTH 89 (114)
Q Consensus 65 ~~G-~L~I~~v~~~D~gg~Y~C~a~n 89 (114)
.+| +|++.|+..+++| .|.|++.-
T Consensus 330 ~n~VdL~F~nAp~saSG-LYVfVl~y 354 (540)
T PHA03282 330 GHTVNLQLRDASEASGG-LYVCVVYV 354 (540)
T ss_pred CCccceEecCCCcccCc-eEEEEEEE
Confidence 344 7999999999995 99999984
No 233
>PF08758 Cadherin_pro: Cadherin prodomain like; InterPro: IPR014868 Cadherins are a group of proteins that mediate calcium dependent cell-cell adhesion. They are activated through cleavage of a prosequence in the late Golgi. This protein corresponds to the folded region of the prosequence, and is termed the prodomain. The prodomain shows structural resemblance to the cadherin domain, but lacks all the features known to be important for cadherin-cadherin interactions []. ; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1OP4_A.
Probab=24.86 E-value=60 Score=20.97 Aligned_cols=39 Identities=10% Similarity=0.164 Sum_probs=24.6
Q ss_pred ccCCcEEEccCCcEEEe-ecCCCCCCeeeEEEEeeccCCc
Q psy9140 56 HSGGRYSITTAGALHIR-DTGMEDSYIRYYCQTTHKLTGE 94 (114)
Q Consensus 56 ~~~~r~~v~~~G~L~I~-~v~~~D~gg~Y~C~a~n~l~~~ 94 (114)
.+|.+|.|.++|+++-. .++..+....++=.|.+..+.+
T Consensus 43 ssDpdF~V~~DGsVy~~r~v~l~~~~~~F~V~a~D~~~~~ 82 (90)
T PF08758_consen 43 SSDPDFRVLEDGSVYAKRPVQLSSEQRSFTVHAWDSQTQE 82 (90)
T ss_dssp ---SEEEEETTTEEEEES--S-SSS-EEEEEEEEETTTTE
T ss_pred cCCCCEEEcCCCeEEEeeeEecCCCceEEEEEEECCCCCe
Confidence 35679999999998764 5666665457888888876543
No 234
>PF02368 Big_2: Bacterial Ig-like domain (group 2); InterPro: IPR003343 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins as well as in some uncharacterised eukaryote proteins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 3NCX_B 3NCW_D 4AQ1_A 2ZQK_B 2ZWK_C 1F02_I 1E5U_I 1F00_I 2L04_A.
Probab=23.99 E-value=1.7e+02 Score=17.51 Aligned_cols=73 Identities=18% Similarity=0.245 Sum_probs=47.1
Q ss_pred ceeeccceeEEEeCCeEEEEeec-CCCCCCcceEEEeeCCeeeeeeeec-cCCcEEEccCCcEEEeecCCCCCCeeeEEE
Q psy9140 9 DYEINTGNTFVLRGNIAVLQCNI-PAYNHNLLLIAWLREGVSEARSIIH-SGGRYSITTAGALHIRDTGMEDSYIRYYCQ 86 (114)
Q Consensus 9 ~~~v~~~d~~v~~G~~AvL~C~~-~~~~~~~~~vsW~kd~~~~~~~~~~-~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~ 86 (114)
...+.|....+..|.+..|.=.+ +...... .+.|.-++..+. ... ..++..-...|.-.|.-.-.+ . ....|.
T Consensus 4 ~I~i~~~~~~l~~G~~~~l~~~~~~~~~~~~-~v~w~ssn~~ia--tV~~~~G~Vta~~~G~a~Itat~~~-~-~~~~~t 78 (79)
T PF02368_consen 4 SITITPTSVTLKVGQTQQLTATVTPSDGSNS-KVTWSSSNPSIA--TVDGNTGKVTALKAGTATITATSGD-N-KSATVT 78 (79)
T ss_dssp SEEETTTEEECETTCEETTEEEEEEEESTTS-CEEEEESSTTTE--EEETTTEEEEESSSCEEEEEEEETT-S-EEEEEE
T ss_pred EEEEECCEEEEECCCEEEEEEEEEECCCcEe-EEEEEeCCCeEE--EEECCCEEEEEEECeEEEEEEEECC-C-ceEEEE
Confidence 45678888889999999766555 2222211 689999887764 334 567777777787777654333 3 355554
No 235
>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.
Probab=22.98 E-value=1.3e+02 Score=21.64 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=28.0
Q ss_pred CcEE-EccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140 59 GRYS-ITTAGALHIRDTGMEDSYIRYYCQTTHK 90 (114)
Q Consensus 59 ~r~~-v~~~G~L~I~~v~~~D~gg~Y~C~a~n~ 90 (114)
-||. +.|-..|+|+.....|..+.|.|...|.
T Consensus 89 ~rfr~miP~~alQVR~~n~ad~e~~~vwEliH~ 121 (160)
T cd01255 89 FRFRVLIPVTALQVRASSAADMESNFLWELIHL 121 (160)
T ss_pred eeEEEeeceeeeeeecCCCcCcccceEEEEEee
Confidence 4787 6788999999999999888999999986
No 236
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=21.86 E-value=55 Score=27.19 Aligned_cols=26 Identities=15% Similarity=0.101 Sum_probs=18.3
Q ss_pred EccCC-cEEEeecCCCCCCeeeEEEEee
Q psy9140 63 ITTAG-ALHIRDTGMEDSYIRYYCQTTH 89 (114)
Q Consensus 63 v~~~G-~L~I~~v~~~D~gg~Y~C~a~n 89 (114)
...++ +|++.|+..+++| .|.|++.-
T Consensus 264 ~~~~~~~l~f~~a~~~~sG-LYv~V~~~ 290 (439)
T PF02480_consen 264 WASNGVDLQFTNAPESASG-LYVFVVYY 290 (439)
T ss_dssp E-TTSSSEEESS--GGG-E-EEEEEEEE
T ss_pred ccCCCcceEecCCCcccCc-eEEEEEEE
Confidence 33445 8999999999995 99999984
No 237
>COG5475 Uncharacterized small protein [Function unknown]
Probab=21.39 E-value=2e+02 Score=17.33 Aligned_cols=24 Identities=8% Similarity=0.100 Sum_probs=17.3
Q ss_pred cEEEeecCCCCCCeeeEEEEeeccCCc
Q psy9140 68 ALHIRDTGMEDSYIRYYCQTTHKLTGE 94 (114)
Q Consensus 68 ~L~I~~v~~~D~gg~Y~C~a~n~l~~~ 94 (114)
...|++.+.+ |+|.|.-.+..+.+
T Consensus 19 ~Mtvs~~ss~---Gmy~C~Wf~g~g~~ 42 (60)
T COG5475 19 RMTVSGYSSD---GMYECRWFDGYGVK 42 (60)
T ss_pred eEEEeccccC---CeEEEEEecCCCcc
Confidence 4666666653 49999999987653
No 238
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=20.20 E-value=1.7e+02 Score=21.05 Aligned_cols=47 Identities=15% Similarity=0.141 Sum_probs=29.8
Q ss_pred eCCeEEEEeecCCCC------CCcc-eEEEeeCCeeeeeeeeccCCcEEEccCCcEE
Q psy9140 21 RGNIAVLQCNIPAYN------HNLL-LIAWLREGVSEARSIIHSGGRYSITTAGALH 70 (114)
Q Consensus 21 ~G~~AvL~C~~~~~~------~~~~-~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~ 70 (114)
++..--+-|=-+.-. ++.. .|.|.+++... -...++.|...++|+|.
T Consensus 99 ~~~~~D~lCFdDmK~~~nCIdKn~lm~V~~~~~~~~~---f~~~~~~Y~~~~~G~i~ 152 (157)
T PF06092_consen 99 EEGKYDRLCFDDMKTPKNCIDKNILMSVRKSKNGYTY---FSFDDSSYQQTPDGKII 152 (157)
T ss_pred CCCCcceeccCCCCCCcccccCCeEEEEEEcCCCcEE---EEecCCEEEECCCCCEE
Confidence 455555667532211 3455 88999887754 23467888888888874
Done!