RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9140
(114 letters)
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 77.3 bits (190), Expect = 3e-18
Identities = 33/98 (33%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARSIIHSGGRYSITTAG 67
YE + V+RGN AV++C IP++ + + +++W + G+Y + +G
Sbjct: 105 YYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG 164
Query: 68 ALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMV 105
LHIR+ G ED Y Y C+T H+LTGE ++S +V
Sbjct: 165 ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLV 202
Score = 31.4 bits (71), Expect = 0.038
Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 3/71 (4%)
Query: 16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTG 75
++ + L C PA W + R +G L I+D
Sbjct: 221 PLELMVAHTISLLC--PAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAV 278
Query: 76 MEDSYIRYYCQ 86
+EDS +Y C
Sbjct: 279 VEDS-GKYLCV 288
Score = 26.8 bits (59), Expect = 1.7
Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 20/67 (29%)
Query: 16 NTFVLRGNIAVLQCNI---PAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIR 72
V G AV C P ++W+++G ++I HS L I
Sbjct: 316 TQTVDFGRPAVFTCQYTGNPIKT-----VSWMKDG----KAIGHSESV--------LRIE 358
Query: 73 DTGMEDS 79
ED
Sbjct: 359 SVKKEDK 365
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 73.8 bits (181), Expect = 7e-17
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Query: 9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARSIIHSGGRYSITTAG 67
YE + V+RGN AV++C IP++ + + +++W + G+Y + +G
Sbjct: 140 YYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG 199
Query: 68 ALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSE 107
LHIR+ G ED Y Y C+T H+LTGE ++S +V
Sbjct: 200 ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVIT 239
Score = 34.5 bits (79), Expect = 0.004
Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 7/71 (9%)
Query: 16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTG 75
++ G ++ C + Y + I W R+ + + + G L I +
Sbjct: 535 KKAIVAGETLIVTCPVAGYP--IDSIVWERDNR-----ALPINRKQKVFPNGTLIIENVE 587
Query: 76 MEDSYIRYYCQ 86
Y C
Sbjct: 588 RNSDQATYTCV 598
Score = 34.1 bits (78), Expect = 0.006
Identities = 11/68 (16%), Positives = 18/68 (26%), Gaps = 3/68 (4%)
Query: 19 VLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMED 78
G L C++P + L I W +G + L I
Sbjct: 631 AQVGQYLTLHCSVPGGDLPLN-IDWTLDG-QAISEDLGITTSRVGRRGSVLTIEAVEASH 688
Query: 79 SYIRYYCQ 86
+ + C
Sbjct: 689 AG-NFTCH 695
Score = 30.3 bits (68), Expect = 0.10
Identities = 12/72 (16%), Positives = 20/72 (27%), Gaps = 15/72 (20%)
Query: 16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSI--------TTAG 67
+ G L+C + I+W +G I + RY +
Sbjct: 438 EETMEPGPSVFLKCVAGG--NPTPEISWELDGK-----KIANNDRYQVGQYVTVNGDVVS 490
Query: 68 ALHIRDTGMEDS 79
L+I D
Sbjct: 491 YLNITSVHANDG 502
Score = 29.5 bits (66), Expect = 0.19
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 3/68 (4%)
Query: 19 VLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMED 78
+ L C + + + W + R +G L I+D +ED
Sbjct: 260 YSGSSTMALLCPAQG--YPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVED 317
Query: 79 SYIRYYCQ 86
S +Y C
Sbjct: 318 SG-KYLCV 324
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 60.6 bits (147), Expect = 3e-12
Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 6/89 (6%)
Query: 19 VLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMED 78
V RG VL C P + L AW+ R+ G L+I D
Sbjct: 114 VRRGQGMVLLCGPPPH-SGELSYAWIFNE----YPSYQDNRRFVSQETGNLYIAKVEKSD 168
Query: 79 SYIRYYCQTTHKLTGERKISPPSQVMVSE 107
Y C T+ +T + + PP+ +++
Sbjct: 169 VG-NYTCVVTNTVTNHKVLGPPTPLILRN 196
Score = 25.9 bits (57), Expect = 3.6
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 7/64 (10%)
Query: 16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTG 75
+G L+C A + + I W R + + G L I +
Sbjct: 214 TVPAEKGTTVKLEC--FALGNPVPTILWRRADGKPI-----ARKARRHKSNGILEIPNFQ 266
Query: 76 MEDS 79
ED+
Sbjct: 267 QEDA 270
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 57.2 bits (138), Expect = 4e-11
Identities = 20/90 (22%), Positives = 28/90 (31%), Gaps = 5/90 (5%)
Query: 16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTG 75
V G LQCN P +I W+ I R S G L+ +
Sbjct: 125 PVVVQEGAPLTLQCNPPPG-LPSPVIFWMSSS----MEPITQDKRVSQGHNGDLYFSNVM 179
Query: 76 MEDSYIRYYCQTTHKLTGERKISPPSQVMV 105
++D Y C T + P + V
Sbjct: 180 LQDMQTDYSCNARFHFTHTIQQKNPFTLKV 209
Score = 27.5 bits (61), Expect = 0.96
Identities = 10/69 (14%), Positives = 15/69 (21%), Gaps = 15/69 (21%)
Query: 16 NTFVLRGNIAVLQCNI-----PAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALH 70
N + G L C P + W+ G +
Sbjct: 321 NLILAPGEDGRLVCRANGNPKPT-------VQWMVNGE---PLQSAPPNPNREVAGDTII 370
Query: 71 IRDTGMEDS 79
RDT +
Sbjct: 371 FRDTQISSR 379
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 51.0 bits (122), Expect = 3e-09
Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 3/87 (3%)
Query: 19 VLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMED 78
V G VL C+ P + + L WL I R+ T G L+I + D
Sbjct: 20 VKEGKGMVLLCDPPYHFPDDLSYRWLLNEFP--VFITMDKRRFVSQTNGNLYIANVEASD 77
Query: 79 SYIRYYCQTTHKLTGERKISPPSQVMV 105
Y C + + S ++
Sbjct: 78 KG-NYSCFVSSPSITKSVFSKFIPLIP 103
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 51.0 bits (122), Expect = 5e-09
Identities = 21/90 (23%), Positives = 32/90 (35%), Gaps = 6/90 (6%)
Query: 19 VLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMED 78
+ G + C+ P + L WL I G R+ T G L+I T D
Sbjct: 113 ITEGWGVMFTCSPPPHYPALS-YRWLLNEFPN--FIPADGRRFVSQTTGNLYIAKTEASD 169
Query: 79 SYIRYYCQTTHKL--TGERKISPPSQVMVS 106
Y C T + + S SQ+ ++
Sbjct: 170 LG-NYSCFATSHIDFITKSVFSKFSQLSLA 198
Score = 33.3 bits (76), Expect = 0.010
Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 18/69 (26%)
Query: 16 NTFVLRGNIAVLQCNI-----PAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALH 70
+T G+ C PA + WLR+G + S R ++ G L
Sbjct: 303 DTEADIGSDLRWSCVASGKPRPA-------VRWLRDGQP-----LASQNRIEVSG-GELR 349
Query: 71 IRDTGMEDS 79
+EDS
Sbjct: 350 FSKLVLEDS 358
Score = 30.2 bits (68), Expect = 0.100
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 10/64 (15%)
Query: 16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTG 75
+T+ L G + L+C A+ + + I W + S+ + S LHI++
Sbjct: 216 DTYALTGQMVTLEC--FAFGNPVPQIKWRKLDGSQTSKWLSSEPL--------LHIQNVD 265
Query: 76 MEDS 79
ED
Sbjct: 266 FEDE 269
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 50.3 bits (120), Expect = 1e-08
Identities = 15/100 (15%), Positives = 26/100 (26%), Gaps = 5/100 (5%)
Query: 16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VSEARSIIHSGGRYSITTAGALHIRD 73
+ G L C +P L I W + + R + G L+
Sbjct: 109 EKTPIEGRPFQLDCVLPNAYPKPL-ITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTI 167
Query: 74 TGMEDSYI--RYYCQTTHKLTGERKISPPSQVMVSEIALP 111
ED +Y C + E + ++
Sbjct: 168 VTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNS 207
Score = 34.1 bits (78), Expect = 0.006
Identities = 9/64 (14%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTG 75
+ G++ ++ C ++ + + + G + R++ T+ L + T
Sbjct: 221 DMMAKAGDVTMIYC--MYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTL 278
Query: 76 MEDS 79
ED
Sbjct: 279 PEDE 282
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 40.5 bits (95), Expect = 7e-06
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 16/69 (23%)
Query: 16 NTFVLRGNIAVLQCNI-----PAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALH 70
N + A+L+C P I+WL+EG + R +I G L
Sbjct: 17 NQTLAVDGTALLKCKATGDPLPV-------ISWLKEG----FTFPGRDPRATIQEQGTLQ 65
Query: 71 IRDTGMEDS 79
I++ + D+
Sbjct: 66 IKNLRISDT 74
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 41.8 bits (98), Expect = 8e-06
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Query: 16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGV---SEARSIIHSGGRYSITTAGALHIR 72
+T V +G A+L+C P + W+++GV + R I G L I
Sbjct: 117 DTRVAKGETALLECG-PPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLIS 175
Query: 73 DTGMEDS 79
+ D
Sbjct: 176 NVEPIDE 182
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 41.0 bits (96), Expect = 2e-05
Identities = 9/67 (13%), Positives = 18/67 (26%), Gaps = 13/67 (19%)
Query: 16 NTFVLRGNIAVLQCNI---PAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIR 72
N + +C + P + W++ G ++ + I L I
Sbjct: 321 NLYAYESMDIEFECAVSGKPVPT-----VNWMKNGD-----VVIPSDYFQIVGGSNLRIL 370
Query: 73 DTGMEDS 79
D
Sbjct: 371 GVVKSDE 377
Score = 36.0 bits (83), Expect = 0.001
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTG 75
+ G+ +L+C + + I W + + I R + +GAL I
Sbjct: 130 SITAFMGDTVLLKCEVIG--DPMPTIHWQKNQQD--LNPIPGDSRVVVLPSGALQISRLQ 185
Query: 76 MEDS 79
DS
Sbjct: 186 PGDS 189
Score = 35.6 bits (82), Expect = 0.002
Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 16/69 (23%)
Query: 16 NTFVLRGNIAVLQCNI-----PAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALH 70
N + G AVL+C + P+ WLR I +YS+ L
Sbjct: 230 NVIAIEGKDAVLECCVSGYPPPS-------FTWLRGE----EVIQLRSKKYSLLGGSNLL 278
Query: 71 IRDTGMEDS 79
I + +DS
Sbjct: 279 ISNVTDDDS 287
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted
in U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 39.7 bits (93), Expect = 2e-05
Identities = 15/69 (21%), Positives = 20/69 (28%), Gaps = 16/69 (23%)
Query: 16 NTFVLRGNIAVLQCNI-----PAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALH 70
N V VL C P I W ++G + R G L
Sbjct: 17 NQTVAVDGTFVLSCVATGSPVPT-------ILWRKDG----VLVSTQDSRIKQLENGVLQ 65
Query: 71 IRDTGMEDS 79
IR + D+
Sbjct: 66 IRYAKLGDT 74
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 40.1 bits (94), Expect = 3e-05
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 18/76 (23%)
Query: 16 NTFVLRGNIAVLQCNI-----PAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALH 70
N ++ G AVL C P+ ++W++ S + R ++ +G+L
Sbjct: 109 NVKIIEGLKAVLPCTTMGNPKPS-------VSWIKGD-----SALRENSRIAVLESGSLR 156
Query: 71 IRDTGMEDSYIRYYCQ 86
I + ED+ +Y C
Sbjct: 157 IHNVQKEDAG-QYRCV 171
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 40.2 bits (93), Expect = 3e-05
Identities = 22/119 (18%), Positives = 35/119 (29%), Gaps = 27/119 (22%)
Query: 19 VLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGG------------------R 60
V+RG +L C H+ ++ W S AR + S
Sbjct: 12 VMRGKSVILDCTPTG-THDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPP 70
Query: 61 YSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERK-------ISPPSQVMVSEIALPL 112
Y + + G L + + + D Y C G + + P VS L
Sbjct: 71 YQLDSQGRLVLAEAQVGDER-DYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTL 128
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 40.5 bits (95), Expect = 3e-05
Identities = 17/107 (15%), Positives = 35/107 (32%), Gaps = 23/107 (21%)
Query: 16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGA----LHI 71
LRG + ++ P +I W + +I + G Y + + +
Sbjct: 113 AVHALRGEVVSIKI--PFSGKPDPVITWQKGQD-----LIDNNGHYQVIVTRSFTSLVFP 165
Query: 72 RDTGMEDSYIRYYCQTTHKLTGERKIS----------PPSQVMVSEI 108
+D+ Y ++ G + + PP V VS++
Sbjct: 166 NGVERKDAG-FYVVCAKNRF-GIDQKTVELDVADVPDPPRGVKVSDV 210
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 40.3 bits (94), Expect = 3e-05
Identities = 21/95 (22%), Positives = 32/95 (33%), Gaps = 8/95 (8%)
Query: 16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTG 75
V+ G AVL C I ++ +REG + Y + IR
Sbjct: 98 EVTVVEGQEAVLPCLITDPALKDS-VSLMREG----GRQVLRKTVYFFSPWRGFIIRKAK 152
Query: 76 MEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIAL 110
+ DS Y C+T G S + V+ +
Sbjct: 153 VLDSNT-YVCKTMVN--GRESTSTGIWLKVNRVHP 184
Score = 32.2 bits (73), Expect = 0.021
Identities = 8/64 (12%), Positives = 16/64 (25%), Gaps = 1/64 (1%)
Query: 16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTG 75
+RG A + C+ + R + AL +
Sbjct: 195 KLVRIRGEAAQIVCSATNAEVGFN-VILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVD 253
Query: 76 MEDS 79
+D+
Sbjct: 254 FQDA 257
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 38.5 bits (90), Expect = 6e-05
Identities = 19/71 (26%), Positives = 25/71 (35%), Gaps = 7/71 (9%)
Query: 22 GNIAVLQCNIPAYNHNLLLIAWLREGVSEAR-SIIHSGGRYSITTAGA-----LHIRDTG 75
G + C + ++ L W R+ E I GGRY T L I D
Sbjct: 15 GESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLT 74
Query: 76 MEDSYIRYYCQ 86
+ED Y C
Sbjct: 75 VEDGGT-YRCG 84
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules,
NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4
b.1.1.4 PDB: 1ie5_A
Length = 291
Score = 39.5 bits (92), Expect = 6e-05
Identities = 11/75 (14%), Positives = 22/75 (29%), Gaps = 9/75 (12%)
Query: 16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTA----GALHI 71
+ G C + + I+W + + R S+ L I
Sbjct: 11 QGEISVGESKFFLCQVAG-DAKDKDISWFSPN---GEKLSPNQQRISVVWNDDDSSTLTI 66
Query: 72 RDTGMEDSYIRYYCQ 86
+ ++D+ Y C
Sbjct: 67 YNANIDDA-GIYKCV 80
Score = 34.5 bits (79), Expect = 0.004
Identities = 13/76 (17%), Positives = 20/76 (26%), Gaps = 13/76 (17%)
Query: 16 NTFVLRGNIAVLQCNI-----PAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALH 70
N G L C+ P ++W ++G + L
Sbjct: 205 NATANLGQSVTLVCDADGFPEPT-------MSWTKDGEPIENEEEDDEKHIFSDDSSELT 257
Query: 71 IRDTGMEDSYIRYYCQ 86
IR+ D Y C
Sbjct: 258 IRNVDKNDEA-EYVCI 272
Score = 32.9 bits (75), Expect = 0.011
Identities = 15/73 (20%), Positives = 23/73 (31%), Gaps = 12/73 (16%)
Query: 16 NTFVLRGNIAVLQCNI---PAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIR 72
G AV+ C++ I W +G I+ R+ + + L IR
Sbjct: 109 PQEFKEGEDAVIVCDVVSSLPPT-----IIWKHKGRD---VILKKDVRFIVLSNNYLQIR 160
Query: 73 DTGMEDSYIRYYC 85
D Y C
Sbjct: 161 GIKKTDEGT-YRC 172
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 38.3 bits (89), Expect = 7e-05
Identities = 16/80 (20%), Positives = 24/80 (30%), Gaps = 11/80 (13%)
Query: 16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT-------AGA 68
L G ++C I + IAW + + GRY++ T
Sbjct: 22 TQHALHGEKGQIKCFIRS-TPPPDRIAWSWKEN---VLESGTSGRYTVETISTEEGVIST 77
Query: 69 LHIRDTGMEDSYIRYYCQTT 88
L I + D Y C
Sbjct: 78 LTISNIVRADFQTIYNCTAW 97
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 38.8 bits (90), Expect = 1e-04
Identities = 13/94 (13%), Positives = 25/94 (26%), Gaps = 17/94 (18%)
Query: 19 VLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHS--------------GGRYSIT 64
V G +L + +L +W + + I GR I
Sbjct: 11 VAEGKEVLLLVHNLP--QHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIY 68
Query: 65 TAGALHIRDTGMEDSYIRYYCQTTHKLTGERKIS 98
+L I++ D+ Y + +
Sbjct: 69 PNASLLIQNIIQNDT-GFYTLHVIKSDLVNEEAT 101
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 38.0 bits (88), Expect = 2e-04
Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 11/99 (11%)
Query: 16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGV-------SEARSIIHSGGRYSITTAGA 68
N RG L+C + + WLR+G ++ + + +
Sbjct: 11 NITGARGLTGTLRCQLQV-QGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQ 69
Query: 69 LHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSE 107
L I + D+ +Y C +S P V +
Sbjct: 70 LRITSLQLSDT-GQYQCLVFLGH-QTF-VSQPGYVGLEG 105
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 37.2 bits (86), Expect = 2e-04
Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 9/81 (11%)
Query: 14 TGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSG--------GRYSITT 65
TGN +G +LQC++ + + + W ++ A G R +
Sbjct: 10 TGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGP 69
Query: 66 AGALHIRDTGMEDSYIRYYCQ 86
L ++ + D+ Y+C
Sbjct: 70 GLGLTLQSLTVNDTGE-YFCI 89
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 38.0 bits (88), Expect = 2e-04
Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 7/76 (9%)
Query: 16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGV-----SEARSIIHSGGRYSITTAGALH 70
+ GN AVL C+ + W ++G+ ++ + T G L
Sbjct: 116 PSSATIGNRAVLTCSEQDGSPPSE-YTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELV 174
Query: 71 IRDTGMEDSYIRYYCQ 86
D+ Y C+
Sbjct: 175 FDPLSASDTG-EYSCE 189
Score = 27.2 bits (60), Expect = 1.2
Identities = 11/77 (14%), Positives = 18/77 (23%), Gaps = 9/77 (11%)
Query: 16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG------VSEARSIIHSGGRYSITTAGAL 69
+ N L C + + W + V I S +
Sbjct: 13 EVRIPENNPVKLSC--AYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGI 70
Query: 70 HIRDTGMEDSYIRYYCQ 86
+ ED+ Y C
Sbjct: 71 TFKSVTREDTGT-YTCM 86
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 37.9 bits (88), Expect = 2e-04
Identities = 20/93 (21%), Positives = 30/93 (32%), Gaps = 13/93 (13%)
Query: 16 NTFVLRGNIAVLQCNI---PAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIR 72
G AV+ C++ I W +G I+ R+ + + L IR
Sbjct: 109 PQEFKEGEDAVIVCDVVSSLPPT-----IIWKHKGRDV---ILKKDVRFIVLSNNYLQIR 160
Query: 73 DTGMEDSYIRYYCQTTHKLTGERKISPPSQVMV 105
D Y C+ GE QV+V
Sbjct: 161 GIKKTDEGT-YRCEGRILARGEINFKDI-QVIV 191
Score = 32.9 bits (75), Expect = 0.010
Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 9/75 (12%)
Query: 16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTA----GALHI 71
+ G C + + I+W + + R S+ L I
Sbjct: 11 QGEISVGESKFFLCQVAG-DAKDKDISWFSPN---GEKLSPNQQRISVVWNDDDSSTLTI 66
Query: 72 RDTGMEDSYIRYYCQ 86
+ ++D+ I Y C
Sbjct: 67 YNANIDDAGI-YKCV 80
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 37.5 bits (87), Expect = 3e-04
Identities = 13/76 (17%), Positives = 19/76 (25%), Gaps = 16/76 (21%)
Query: 15 GNTFVLRGNIAVLQCNI--------PAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTA 66
G++ L +Q Y L + W G + I R
Sbjct: 1 GSSIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSA-----IRYSDRVKTGVT 55
Query: 67 G---ALHIRDTGMEDS 79
G L I + D
Sbjct: 56 GEQIWLQINEPTPNDK 71
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 37.9 bits (88), Expect = 3e-04
Identities = 11/74 (14%), Positives = 22/74 (29%), Gaps = 10/74 (13%)
Query: 16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSIT---TAGALHIR 72
+ + G LQ + +AW ++ I+ I+ L
Sbjct: 486 DISTVVGEEVQLQAT--IEGAEPISVAWFKDK----GEIVRESDNIWISYSENIATLQFS 539
Query: 73 DTGMEDSYIRYYCQ 86
++ +Y CQ
Sbjct: 540 RAEPANAG-KYTCQ 552
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 37.4 bits (87), Expect = 3e-04
Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 10/67 (14%)
Query: 16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGA---LHIR 72
L+G L+C + ++W ++ + SG +Y I + +HI
Sbjct: 201 PVETLKGADVHLECELQGT--PPFQVSWHKDK-----RELRSGKKYKIMSENFLTSIHIL 253
Query: 73 DTGMEDS 79
+ D
Sbjct: 254 NVDSADI 260
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 37.8 bits (87), Expect = 3e-04
Identities = 18/96 (18%), Positives = 28/96 (29%), Gaps = 20/96 (20%)
Query: 19 VLRGNIAVLQCNIPAYNHN---LLLIAWLREGVSEARSIIHSG--------GRYSITTA- 66
G+ L C + N + + W R G S + ++ H R A
Sbjct: 12 GFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAAR 71
Query: 67 -------GALHIRDTGMEDSYIRYYCQTTHKLTGER 95
+L + +ED Y C G R
Sbjct: 72 LGAELRNASLRMFGLRVEDEG-NYTCLFVTFPQGSR 106
Score = 28.9 bits (64), Expect = 0.33
Identities = 14/83 (16%), Positives = 22/83 (26%), Gaps = 11/83 (13%)
Query: 16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTG 75
N + L N A L C+ + W + G + I +
Sbjct: 226 NNWYLGQNEATLTCDARSNPEPTG-YNWSTTMGPLPPFAVAQGAQLLIRP---VDKPINT 281
Query: 76 MEDSYIRYYCQTTHKLTGERKIS 98
C T+ L G R+
Sbjct: 282 ------TLICNVTNAL-GARQAE 297
Score = 27.4 bits (60), Expect = 1.2
Identities = 7/52 (13%), Positives = 16/52 (30%), Gaps = 6/52 (11%)
Query: 41 IAWLREGV---SEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTH 89
I W + + ++ G ++T + + D C+ H
Sbjct: 150 ITWHSDLGGMPNTSQVPGFLSGTVTVT--SLWILVPSSQVDG-KNVTCKVEH 198
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 37.1 bits (86), Expect = 4e-04
Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 6/64 (9%)
Query: 16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTG 75
+ V G AV++C P H I+W ++G + G L I T
Sbjct: 120 DVMVAVGEPAVMECQ-PPRGHPEPTISWKKDGS-----PLDDKDERITIRGGKLMITYTR 173
Query: 76 MEDS 79
D+
Sbjct: 174 KSDA 177
Score = 31.3 bits (71), Expect = 0.036
Identities = 14/78 (17%), Positives = 21/78 (26%), Gaps = 14/78 (17%)
Query: 16 NTFVLRGNIAVLQCN---IPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHI- 71
+ V +G A L C P I W + G + +G+L
Sbjct: 18 DLIVSKGEPATLNCKAEGRPTPT-----IEWYKGGERVETDKDDPRSHRMLLPSGSLFFL 72
Query: 72 ----RDTGMEDSYIRYYC 85
D + Y C
Sbjct: 73 RIVHGRKSRPDEGV-YVC 89
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 4e-04
Identities = 25/145 (17%), Positives = 39/145 (26%), Gaps = 69/145 (47%)
Query: 14 TGNTFVLRGNIAVLQCNIPAYNHNLLLI---AW--LRE-GVSEARSII--HSGGRYS--I 63
T T Q PA L L+ A+ L+ G+ A + HS G Y+
Sbjct: 1729 TQFT----------Q---PA----LTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALA 1771
Query: 64 TTAGALHIRDT-------------------------GM------------EDSYIRYYCQ 86
+ A + I GM ++Y +
Sbjct: 1772 SLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVE 1831
Query: 87 TTHKLTGER-KI----SPPSQVMVS 106
K TG +I Q + +
Sbjct: 1832 RVGKRTGWLVEIVNYNVENQQYVAA 1856
Score = 26.2 bits (57), Expect = 3.5
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 16/51 (31%)
Query: 12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE-----GVSEARSIIHS 57
+N V+ G L L LR+ G+ ++R I S
Sbjct: 371 VNGAKNLVVSGPPQSLY----------GLNLTLRKAKAPSGLDQSR-IPFS 410
Score = 25.4 bits (55), Expect = 6.4
Identities = 7/61 (11%), Positives = 20/61 (32%), Gaps = 9/61 (14%)
Query: 52 RSIIHSGG--RYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIA 109
R + S G + + A + +++ + + + T + P+ +
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAAD---DEPT----TPAE 59
Query: 110 L 110
L
Sbjct: 60 L 60
Score = 25.0 bits (54), Expect = 7.9
Identities = 3/15 (20%), Positives = 6/15 (40%)
Query: 32 PAYNHNLLLIAWLRE 46
+ L ++ WL
Sbjct: 207 KVFTQGLNILEWLEN 221
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 37.3 bits (86), Expect = 4e-04
Identities = 12/78 (15%), Positives = 27/78 (34%), Gaps = 5/78 (6%)
Query: 12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGV---SEARSIIHSGGRYSITTAGA 68
++ + + G + C I + ++ W RE + + G ++
Sbjct: 216 VSKASYLLREGEEFTVTCTIKDVSSSVY-STWKRENSQTKLQEKYNSWHHGDFNYERQAT 274
Query: 69 LHIRDTGMEDSYIRYYCQ 86
L I + DS + + C
Sbjct: 275 LTISSARVNDSGV-FMCY 291
Score = 31.6 bits (71), Expect = 0.046
Identities = 11/75 (14%), Positives = 17/75 (22%), Gaps = 5/75 (6%)
Query: 15 GNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGV---SEARSIIHSGGRYSITTAGALHI 71
FV G L A+ W+ + S +I LH+
Sbjct: 321 TTVFVNDGENVDLIVEYEAFPK-PEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHL 379
Query: 72 RDTGMEDSYIRYYCQ 86
+ Y
Sbjct: 380 TRLKGTEGG-TYTFL 393
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 37.0 bits (85), Expect = 6e-04
Identities = 20/97 (20%), Positives = 31/97 (31%), Gaps = 9/97 (9%)
Query: 7 SSDYEINTGNTFVLRGNIAVLQCNIPAYNHN-----LLLIAWLREGVSEARSIIHSGGRY 61
+ F L G L+C Y + + W + AR++
Sbjct: 18 CRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKND--SARTVPGEEETR 75
Query: 62 SITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKIS 98
GAL + EDS Y C T + + K+S
Sbjct: 76 MWAQDGALWLLPALQEDS-GTYVCTTRNA-SYCDKMS 110
Score = 29.7 bits (66), Expect = 0.18
Identities = 10/82 (12%), Positives = 20/82 (24%), Gaps = 12/82 (14%)
Query: 16 NTFVLRGNIAVLQCNI-PAYNHNLLLIAWLREG-----VSEARSIIHSGGRYSITTAGA- 68
G+ + C + L + W + + G R +
Sbjct: 235 TISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNEN 294
Query: 69 -----LHIRDTGMEDSYIRYYC 85
L ED ++ + C
Sbjct: 295 YIEVPLIFDPVTREDLHMDFKC 316
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 36.9 bits (85), Expect = 6e-04
Identities = 14/93 (15%), Positives = 27/93 (29%), Gaps = 8/93 (8%)
Query: 16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTG 75
V A+L C + ++ +R + YS + I
Sbjct: 98 EVVVFEDQDALLPCLLTDPVLEAG-VSLVRVRGR----PLMRHTNYSFSPWHGFTIHRAK 152
Query: 76 MEDSYIRYYCQTTHKLTGERKISPPSQVMVSEI 108
S Y C G + +S ++ V ++
Sbjct: 153 FIQS-QDYQCSALMG--GRKVMSISIRLKVQKV 182
Score = 29.9 bits (67), Expect = 0.15
Identities = 7/64 (10%), Positives = 17/64 (26%), Gaps = 1/64 (1%)
Query: 16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTG 75
+RG A + C+ + + N + A L++
Sbjct: 195 ELVRIRGEAAQIVCSASSVDVNFD-VFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVD 253
Query: 76 MEDS 79
+ +
Sbjct: 254 FQHA 257
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 35.7 bits (82), Expect = 6e-04
Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 15/82 (18%)
Query: 19 VLRGNIAVLQCNI--PAYNHNLLLIAWLREGVSEARSIIHSGGRYS------------IT 64
L G+ A L C+ + + W R+ V + + + +
Sbjct: 19 TLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHD 78
Query: 65 TAGALHIRDTGMEDSYIRYYCQ 86
LHIRD D+ I Y C+
Sbjct: 79 HQAELHIRDVRGHDASI-YVCR 99
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 36.6 bits (84), Expect = 8e-04
Identities = 10/80 (12%), Positives = 20/80 (25%), Gaps = 6/80 (7%)
Query: 11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGV----SEARSIIHSGGRYSITTA 66
+ F+ G ++C NH + W E + ++
Sbjct: 231 QTTLPQLFLKVGEPLWIRCKAVHVNHGFG-LTWELENKALEEGNYFEMSTYSTNRTMIRI 289
Query: 67 GALHIRDTGMEDSYIRYYCQ 86
+ D+ Y C
Sbjct: 290 LFAFVSSVARNDTG-YYTCS 308
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 36.7 bits (84), Expect = 8e-04
Identities = 14/95 (14%), Positives = 26/95 (27%), Gaps = 7/95 (7%)
Query: 19 VLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMED 78
+ V+ C N N+ L A E + G R S + I +
Sbjct: 140 ENKNKTVVIPCLGSISNLNVSLCARYPEKR-----FVPDGNRISWDSKKGFTIPSYMISY 194
Query: 79 SYIRYYCQTTHKLTGERKISPPSQVMVSEIALPLK 113
+ +C+ + V+V +
Sbjct: 195 A-GMVFCEAKIN-DESYQSIMYIVVVVGYRIYDVV 227
Score = 32.8 bits (74), Expect = 0.017
Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 7/71 (9%)
Query: 16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTG 75
N G + C A + I W ++ +++ G L IR
Sbjct: 675 NQTTSIGESIEVSCT--ASGNPPPQIMWFKDN----ETLVEDSGIVLKDGNRNLTIRRVR 728
Query: 76 MEDSYIRYYCQ 86
ED Y CQ
Sbjct: 729 KEDEG-LYTCQ 738
Score = 29.3 bits (65), Expect = 0.22
Identities = 12/81 (14%), Positives = 23/81 (28%), Gaps = 10/81 (12%)
Query: 16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTG 75
G + Y I W + G+ + S L I +
Sbjct: 339 LVEATVGERVRIPAKYLGYPP--PEIKWYKNGIP-----LESNHTIKAG--HVLTIMEVS 389
Query: 76 MEDSYIRYYCQTTHKLTGERK 96
D+ Y T+ ++ E++
Sbjct: 390 ERDTGN-YTVILTNPISKEKQ 409
Score = 29.0 bits (64), Expect = 0.32
Identities = 15/89 (16%), Positives = 21/89 (23%), Gaps = 8/89 (8%)
Query: 16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEA------RSIIHSGGRYSITTAGAL 69
+ G VL C + + W R + G L
Sbjct: 233 GIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTL 292
Query: 70 HIRDTGMEDSYIRYYCQTTHKLTGERKIS 98
I D Y C + L +K S
Sbjct: 293 TIDGVTRSDQ-GLYTCAASSGL-MTKKNS 319
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 36.0 bits (83), Expect = 0.001
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 8/71 (11%)
Query: 16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTG 75
LQCN+ + +H L+ W + GV + + + + I
Sbjct: 12 VIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVE-----LTATRKNASN--MEYRINKPR 64
Query: 76 MEDSYIRYYCQ 86
EDS Y+C
Sbjct: 65 AEDS-GEYHCV 74
Score = 34.8 bits (80), Expect = 0.002
Identities = 14/79 (17%), Positives = 25/79 (31%), Gaps = 15/79 (18%)
Query: 16 NTFVLRGNIAVLQCNI-----PAYNHNLLLIAWLREGVSEARSIIHSGGRYSIT---TAG 67
+ G A++ C P W ++ I +S GR+ I
Sbjct: 101 SENKNEGQDAMMYCKSVGYPHPE-------WMWRKKENGVFEEISNSSGRFFIINKENYT 153
Query: 68 ALHIRDTGMEDSYIRYYCQ 86
L+I + + + Y C
Sbjct: 154 ELNIVNLQITEDPGEYECN 172
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein
3; structural genomics, joint center for struct
genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 35.0 bits (80), Expect = 0.001
Identities = 9/70 (12%), Positives = 24/70 (34%), Gaps = 6/70 (8%)
Query: 16 NTFVLRGNIAVLQCNIPAYNHNLLLIAW------LREGVSEARSIIHSGGRYSITTAGAL 69
+ G+ C+ + + + + AW L++ E + + + G + L
Sbjct: 19 TQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTIL 78
Query: 70 HIRDTGMEDS 79
+R+
Sbjct: 79 RLRNVEFTSE 88
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 36.0 bits (83), Expect = 0.001
Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 14/90 (15%)
Query: 19 VLRGNIAVLQCNI---PAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTG 75
+L GN+ L C L ++ + ++ Y I TA D+G
Sbjct: 182 LLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKT--LRGRNTSSEYQILTARR---EDSG 236
Query: 76 MEDSYIRYYCQTTHKLTGERKISPPSQVMV 105
Y+C+ + K SP ++ V
Sbjct: 237 ------LYWCEAATEDGNVLKRSPELELQV 260
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 35.5 bits (82), Expect = 0.001
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 17/69 (24%)
Query: 16 NTFVLRGNIAVLQCNI-----PAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALH 70
+ G+ ++ C P I W++ + S RYS+ G L
Sbjct: 119 TRVIEVGHTVLMTCKAIGNPTPN-------IYWIKNQ----TKVDMSNPRYSLKD-GFLQ 166
Query: 71 IRDTGMEDS 79
I ++ ED
Sbjct: 167 IENSREEDQ 175
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 35.5 bits (82), Expect = 0.001
Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 16/84 (19%)
Query: 16 NTFVLRGNIAVLQCNI-----PAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALH 70
+G A + C + PA ++WL S R+++ L
Sbjct: 11 PQEFKQGEDAEVVCRVSSSPAPA-------VSWLYHNEE---VTTISDNRFAMLANNNLQ 60
Query: 71 IRDTGMEDSYIRYYCQTTHKLTGE 94
I + D I Y C+ + GE
Sbjct: 61 ILNINKSDEGI-YRCEGRVEARGE 83
Score = 34.0 bits (78), Expect = 0.004
Identities = 15/70 (21%), Positives = 22/70 (31%), Gaps = 18/70 (25%)
Query: 16 NTFVLRGNIAVLQCNI-----PAYNHNLLLIAWLREGVSEARSIIHSGGRYSIT-TAGAL 69
N RG C PA I+W R G +I +Y + + L
Sbjct: 107 NATAERGEEMTFSCRASGSPEPA-------ISWFRNGK-----LIEENEKYILKGSNTEL 154
Query: 70 HIRDTGMEDS 79
+R+ D
Sbjct: 155 TVRNIINSDG 164
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 35.6 bits (82), Expect = 0.001
Identities = 24/101 (23%), Positives = 35/101 (34%), Gaps = 17/101 (16%)
Query: 16 NTFVLRGNIAVLQCNI-----PAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALH 70
V R A + C P I W ++ + S S GR +GAL
Sbjct: 117 LKVVERTRTATMLCAASGNPDPE-------ITWFKDFLPVDPS--ASNGRIKQLRSGALQ 167
Query: 71 IRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIALP 111
I + D +Y C T+ G R S P+ + V +
Sbjct: 168 IESSEETDQG-KYECVATNSA-GVR-YSSPANLYVRVQNVA 205
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 34.8 bits (80), Expect = 0.003
Identities = 23/108 (21%), Positives = 35/108 (32%), Gaps = 24/108 (22%)
Query: 16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGV-----SEARSIIHSGGRYSITTAGALH 70
+ GN + C ++ I W R+ + + +S GR I L
Sbjct: 109 IYYSWEGNPINISC--DVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMI-----LE 161
Query: 71 IRDTGMEDSYIRYYCQTTHKLTGERKIS----------PPSQVMVSEI 108
I T D RY C T+ + G R P V + E+
Sbjct: 162 IAPTSDNDFG-RYNCTATNHI-GTRFQEYILALADVPSSPYGVKIIEL 207
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 33.2 bits (76), Expect = 0.004
Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 15/92 (16%)
Query: 16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTG 75
V G L C +PA I W+++GV + + L + + G
Sbjct: 19 GGAVAPGGTVTLTCEVPA--QPSPQIHWMKDGV-----------PLPLPPSPVLILPEIG 65
Query: 76 MEDSYIRYYCQTTHKLTGERKISPPSQVMVSE 107
+D Y C TH + S + + E
Sbjct: 66 PQDQGT-YSCVATHSS-HGPQESRAVSISIIE 95
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 34.0 bits (78), Expect = 0.005
Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 17/70 (24%)
Query: 16 NTFVLRGNIAVLQCNI-----PAYNHNLLLIAWLREGVSEARSIIHS-GGRYSITTAGAL 69
+G A + C + PA ++WL + R+++ L
Sbjct: 105 PQEFKQGEDAEVVCRVSSSPAPA-------VSWLYHN----EEVTTISDNRFAMLANNNL 153
Query: 70 HIRDTGMEDS 79
I + D
Sbjct: 154 QILNINKSDE 163
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 33.7 bits (77), Expect = 0.005
Identities = 11/72 (15%), Positives = 20/72 (27%), Gaps = 8/72 (11%)
Query: 22 GNIAVLQCNIPAYNHNLLLIAWLREG-------VSEARSIIHSGGRYSITTAGALHIRDT 74
G L + ++ I W + + + Y + G L I+
Sbjct: 14 GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHL 73
Query: 75 GMEDSYIRYYCQ 86
+D I Y
Sbjct: 74 KTDDQDI-YKVS 84
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 34.0 bits (77), Expect = 0.006
Identities = 15/81 (18%), Positives = 23/81 (28%), Gaps = 7/81 (8%)
Query: 16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTG 75
L C I Y + I W + + G + L I +
Sbjct: 137 ELGTHDKYGIDLYCGI-LYAKHYNNITWYKNNQE-----LIIDGTKYSQSGQNLIIHNPE 190
Query: 76 MEDSYIRYYCQTTHKLTGERK 96
+EDS RY C + +
Sbjct: 191 LEDSG-RYDCYVHYDDVRIKN 210
Score = 33.3 bits (75), Expect = 0.009
Identities = 20/105 (19%), Positives = 30/105 (28%), Gaps = 14/105 (13%)
Query: 14 TGNTFVLRGNIAVLQCNIP-------AYNHNLLLIAWLREGVSEARSIIHSGGRYSITTA 66
T N G +C YN ++ W + G +
Sbjct: 36 TMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKN------- 88
Query: 67 GALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIALP 111
G L I + DS+ RY C T K + S + +P
Sbjct: 89 GDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIP 133
Score = 31.7 bits (71), Expect = 0.033
Identities = 12/76 (15%), Positives = 21/76 (27%), Gaps = 5/76 (6%)
Query: 16 NTFVLRGNIAVLQCNIPAY--NHNLLLIAWLREG---VSEARSIIHSGGRYSITTAGALH 70
V G A + C + + +LI W + + T L+
Sbjct: 237 KINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLY 296
Query: 71 IRDTGMEDSYIRYYCQ 86
+ E Y C+
Sbjct: 297 FENVTEEYIGNTYTCR 312
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 33.6 bits (77), Expect = 0.006
Identities = 12/69 (17%), Positives = 21/69 (30%), Gaps = 15/69 (21%)
Query: 16 NTFVLRGNIAVLQCNI-----PAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALH 70
+G A + C + PA ++WL S R+++ L
Sbjct: 107 PQEFKQGEDAEVVCRVSSSPAPA-------VSWLYHNE---EVTTISDNRFAMLANNNLQ 156
Query: 71 IRDTGMEDS 79
I + D
Sbjct: 157 ILNINKSDE 165
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 32.7 bits (75), Expect = 0.007
Identities = 18/69 (26%), Positives = 23/69 (33%), Gaps = 17/69 (24%)
Query: 16 NTFVLRGNIAVLQCNI-----PAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALH 70
+ V+ G VLQC++ P I WL G I LH
Sbjct: 20 DCAVIEGQDFVLQCSVRGTPVPR-------ITWLLNG-----QPIQYARSTCEAGVAELH 67
Query: 71 IRDTGMEDS 79
I+D ED
Sbjct: 68 IQDALPEDH 76
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 33.3 bits (76), Expect = 0.008
Identities = 14/74 (18%), Positives = 19/74 (25%), Gaps = 21/74 (28%)
Query: 16 NTFVLRGNIAVLQCNI-----PAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT----- 65
V R A + C P I W ++ + S I
Sbjct: 117 LKVVERTRTATMLCAASGNPDPE-------ITWFKDF----LPVDTSNNNGRIKQLRSES 165
Query: 66 AGALHIRDTGMEDS 79
GAL I + D
Sbjct: 166 IGALQIEQSEESDQ 179
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 32.8 bits (74), Expect = 0.012
Identities = 12/81 (14%), Positives = 28/81 (34%), Gaps = 2/81 (2%)
Query: 16 NTFVLRGNIAVLQCNIP-AYNHNLLLIAWLREGVS-EARSIIHSGGRYSITTAGALHIRD 73
+ + G ++C++ Y + L I L+ +++ + R S+ T
Sbjct: 100 SGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFT 159
Query: 74 TGMEDSYIRYYCQTTHKLTGE 94
+ED C+ +
Sbjct: 160 PVIEDIGKVLVCRAKLHIDEM 180
Score = 25.9 bits (56), Expect = 3.0
Identities = 15/91 (16%), Positives = 26/91 (28%), Gaps = 11/91 (12%)
Query: 17 TFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGM 76
G+ L C+ +W + S + + G S L +
Sbjct: 11 YLAQIGDSVSLTCS--TTGCESPFFSWRTQIDSPLNGKVTNEGTTST-----LTMNPVSF 63
Query: 77 EDSYIRYYCQTTHKLTGERKISPPSQVMVSE 107
+ + Y C T RK+ QV +
Sbjct: 64 GNEH-SYLCTAT---CESRKLEKGIQVEIYS 90
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 31.1 bits (71), Expect = 0.021
Identities = 16/73 (21%), Positives = 22/73 (30%), Gaps = 21/73 (28%)
Query: 16 NTFVLRGNIAVLQCNI-----PAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAG--- 67
+ V +G+ A + + P W + GV I R
Sbjct: 14 SQTVGQGSDAHFRVRVVGKPDPE-------CEWYKNGVK-----IERSDRIYWYWPEDNV 61
Query: 68 -ALHIRDTGMEDS 79
L IRD EDS
Sbjct: 62 CELVIRDVTGEDS 74
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 32.0 bits (72), Expect = 0.022
Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 13/89 (14%)
Query: 19 VLRGNIAVLQCNIPAYNHNL-LLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGME 77
GN L+C +L L W + S + T+ + +++ E
Sbjct: 133 EEIGNDFKLKCE--PKEGSLPLQFEWQKLS----DSQTMPTPWLAEMTSPVISVKNASSE 186
Query: 78 DSYIRYYCQTTHKLTGERK-----ISPPS 101
S Y C +++ ++ + PPS
Sbjct: 187 YSG-TYSCTVQNRVGSDQCMLRLDVVPPS 214
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 31.6 bits (71), Expect = 0.038
Identities = 8/71 (11%), Positives = 17/71 (23%), Gaps = 2/71 (2%)
Query: 19 VLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMED 78
+ V C A +++W EA ++T + +
Sbjct: 147 GQDDKVLVATCTS-ANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAH 205
Query: 79 SYIRYYCQTTH 89
C +
Sbjct: 206 Q-QSLACIVNY 215
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 31.4 bits (71), Expect = 0.039
Identities = 10/73 (13%), Positives = 19/73 (26%), Gaps = 11/73 (15%)
Query: 16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSG---------GRYSITTA 66
N + G C Y+ I W++ G + + A
Sbjct: 127 NASTVVGGDVEFVCK--VYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNA 184
Query: 67 GALHIRDTGMEDS 79
L + + D+
Sbjct: 185 EVLALFNVTEADA 197
Score = 27.9 bits (62), Expect = 0.64
Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 3/61 (4%)
Query: 19 VLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMED 78
V N +C PA + + + WL+ G E + GG +L + D
Sbjct: 31 VPAANTVKFRC--PAGGNPMPTMRWLKNGK-EFKQEHRIGGYKVRNQHWSLIMESVVPSD 87
Query: 79 S 79
Sbjct: 88 K 88
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 31.5 bits (71), Expect = 0.040
Identities = 19/85 (22%), Positives = 29/85 (34%), Gaps = 15/85 (17%)
Query: 19 VLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGG-------------RYSITT 65
+ G L PA + I WL S A + H R + T
Sbjct: 10 GILGESVTLPLEFPA-GEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQ 68
Query: 66 AGALHIRDTGMEDSYIRYYCQTTHK 90
+ +L + + MED+ Y Q + K
Sbjct: 69 SYSLQLSNLKMEDTGS-YRAQISTK 92
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 30.4 bits (68), Expect = 0.058
Identities = 11/72 (15%), Positives = 20/72 (27%), Gaps = 8/72 (11%)
Query: 16 NTFVLRGNIAVLQCNIPAYNHNLL-LIAWLR-------EGVSEARSIIHSGGRYSITTAG 67
+ V G + + ++ W + V + + S R S
Sbjct: 13 DGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLF 72
Query: 68 ALHIRDTGMEDS 79
LHI D +
Sbjct: 73 ELHITDAQPAFT 84
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2;
beta barrel, immunoglobulin fold, IGV domain, TIM,
immune system; 1.50A {Mus musculus}
Length = 115
Score = 29.9 bits (67), Expect = 0.069
Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 18/85 (21%)
Query: 19 VLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEAR---SIIHSGG---------RYSIT-- 64
L G+ L C + ++ + W + S+I + G RY +
Sbjct: 9 GLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGN 68
Query: 65 -TAG--ALHIRDTGMEDSYIRYYCQ 86
+ G +L I +T + D Y C
Sbjct: 69 ISEGNVSLTIENTVVGDGG-PYCCV 92
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 30.2 bits (68), Expect = 0.093
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 34 YNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTG 93
+ N ++ + G + T GAL I + ED YY + H+
Sbjct: 36 HTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGD-YYMRMLHETED 94
Query: 94 ERKIS 98
+ KI+
Sbjct: 95 QWKIT 99
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 30.4 bits (68), Expect = 0.11
Identities = 11/80 (13%), Positives = 20/80 (25%), Gaps = 23/80 (28%)
Query: 16 NTFVLRGNIAVLQCNI-----PAYNHNLLLIAWLREGVSEARSIIHSG-----------G 59
N + G+ C + P I WL+ + G
Sbjct: 231 NQTAVLGSDVEFHCKVYSDAQPH-------IQWLKHVEVNGSKVGPDGTPYVTVLKTAGA 283
Query: 60 RYSITTAGALHIRDTGMEDS 79
+ L + + ED+
Sbjct: 284 NTTDKELEVLSLHNVTFEDA 303
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 30.1 bits (67), Expect = 0.12
Identities = 12/77 (15%), Positives = 18/77 (23%), Gaps = 7/77 (9%)
Query: 16 NTFVLRGNIAVLQCNIPAYNHNLLLIAW------LREGVSEARSIIHSGGRYSITTAGAL 69
+ G VL C + + W + R + G L
Sbjct: 114 GIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTL 173
Query: 70 HIRDTGMEDSYIRYYCQ 86
I D + Y C
Sbjct: 174 TIDGVTRSDQGL-YTCA 189
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 29.9 bits (67), Expect = 0.12
Identities = 11/74 (14%), Positives = 19/74 (25%), Gaps = 12/74 (16%)
Query: 16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSG----------GRYSITT 65
N + G+ C Y+ I WL+ + G S+
Sbjct: 123 NQTAVLGSDVEFHCK--VYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEA 180
Query: 66 AGALHIRDTGMEDS 79
L + + D
Sbjct: 181 DVRLRLANVSERDG 194
Score = 27.6 bits (61), Expect = 0.79
Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 3/61 (4%)
Query: 19 VLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMED 78
V N +C PA + I+WL+ G E R GG +L + D
Sbjct: 27 VPAANTVRFRC--PAAGNPTPSISWLKNG-REFRGEHRIGGIKLRHQQWSLVMESVVPSD 83
Query: 79 S 79
Sbjct: 84 R 84
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 29.5 bits (66), Expect = 0.14
Identities = 13/77 (16%), Positives = 19/77 (24%), Gaps = 17/77 (22%)
Query: 41 IAWLREG-----VSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK----- 90
+ W R G + I G L I++ +DS Y
Sbjct: 30 VRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGT-YNVTVYSTNGTRI 88
Query: 91 ------LTGERKISPPS 101
L +S P
Sbjct: 89 LNKALDLRILEMVSKPM 105
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 29.6 bits (66), Expect = 0.16
Identities = 10/80 (12%), Positives = 21/80 (26%), Gaps = 12/80 (15%)
Query: 19 VLRGNIAVLQCNIPAYNHNL--LLIAWLREGVSEARSII-----HSGGRYSITTAGALHI 71
+ + C + + + + W R G ++T L +
Sbjct: 125 LFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVT--STLPV 182
Query: 72 RDTGME-DSYIRYYCQTTHK 90
+ Y C+ TH
Sbjct: 183 --GTRDWIEGETYQCRVTHP 200
Score = 26.6 bits (58), Expect = 2.2
Identities = 17/104 (16%), Positives = 29/104 (27%), Gaps = 17/104 (16%)
Query: 7 SSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIH------SGGR 60
S D + T L C + Y + I WL +G + G
Sbjct: 16 SCDGGGHFPPT-------IQLLCLVSGYTPGTIQITWLEDG-QVMDVDLSTASTTQEGEL 67
Query: 61 YSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVM 104
S + L + + +Y CQ T++ +
Sbjct: 68 ASTQSELTLSQKHWLSDRTY---TCQVTYQGHTFEDSTKKCADS 108
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4;
beta barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 29.2 bits (65), Expect = 0.16
Identities = 14/85 (16%), Positives = 32/85 (37%), Gaps = 18/85 (21%)
Query: 19 VLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEAR---SIIHSGG---------RYSIT-- 64
G L C+ +++ + + W + ++ ++ + G +Y++
Sbjct: 8 GFLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLLGK 67
Query: 65 -TAG--ALHIRDTGMEDSYIRYYCQ 86
G +L I +T DS Y C+
Sbjct: 68 VQFGEVSLTISNTNRGDSG-VYCCR 91
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 29.6 bits (66), Expect = 0.18
Identities = 17/101 (16%), Positives = 29/101 (28%), Gaps = 17/101 (16%)
Query: 12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHS-------------- 57
I V N +L + L AW + + I
Sbjct: 4 IEAVPPQVAEDNNVLLLVH--NLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAY 61
Query: 58 GGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKIS 98
GR I + G+L + M+D + Y T + + +
Sbjct: 62 SGREIIYSNGSLLFQMITMKDMGV-YTLDMTDENYRRTQAT 101
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 0.21
Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 14/73 (19%)
Query: 30 NIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRD-----TGMEDSYIRYY 84
+IP LL + W S+ +++ +YS L + + Y+
Sbjct: 386 HIPT---ILLSLIWFDVIKSDVMVVVNKLHKYS------LVEKQPKESTISIPSIYLELK 436
Query: 85 CQTTHKLTGERKI 97
+ ++ R I
Sbjct: 437 VKLENEYALHRSI 449
Score = 24.8 bits (53), Expect = 9.8
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
Query: 39 LLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKIS 98
LL+ +L + + + ++ IRD ++ KLT + S
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAES-IRDGLATWDNWKHV--NCDKLTTIIESS 362
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.21
Identities = 8/28 (28%), Positives = 10/28 (35%), Gaps = 4/28 (14%)
Query: 86 QTTHKLTGERKISPPSQVMVSEIALPLK 113
Q KL K+ S AL +K
Sbjct: 20 QALKKLQASLKLYADD----SAPALAIK 43
Score = 28.0 bits (61), Expect = 0.50
Identities = 9/31 (29%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Query: 50 EARSI--IHSGGR-YSITTAGALHIRDTGME 77
E +++ + + + Y+ +A AL I+ T ME
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKAT-ME 47
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 29.5 bits (65), Expect = 0.21
Identities = 15/90 (16%), Positives = 24/90 (26%), Gaps = 22/90 (24%)
Query: 16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHS------------------ 57
V GN + C + + W +
Sbjct: 145 VVQVDEGNDITMTCP--CTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSE 202
Query: 58 -GGRYSITTAGALHIRDTGMEDSYIRYYCQ 86
GR S + A L IR + D+ R +C+
Sbjct: 203 IAGRASFSGARNLVIRAAKITDAG-RVWCE 231
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 29.3 bits (66), Expect = 0.22
Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 28/113 (24%)
Query: 16 NTFVLRGNIAVLQCNI-----PAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALH 70
+ VL G+ A + +I P ++W R+G + S + L
Sbjct: 14 SVVVLEGSTATFEAHISGFPVPE-------VSWFRDGQVISTSTLPGVQISFSDGRAKLT 66
Query: 71 IRDTGMEDSYIRYYC---------QTTHKLTGERKISPPSQVMVSEIALPLKN 114
I +S RY +T +L + + +PP L++
Sbjct: 67 IPAVTKANSG-RYSLKATNGSGQATSTAELLVKAETAPP------NFVQRLQS 112
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC
complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A
{Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A*
3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A*
3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A*
2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Length = 207
Score = 29.1 bits (65), Expect = 0.25
Identities = 10/80 (12%), Positives = 25/80 (31%), Gaps = 12/80 (15%)
Query: 19 VLRGNIAVLQCNIPAYNHNL--LLIAWLREGVSEARSII-----HSGGRYSITTAGALHI 71
++ + C + +H + W +GV + Y + L +
Sbjct: 15 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVV--SVLTV 72
Query: 72 RDTGME-DSYIRYYCQTTHK 90
+ + Y C+ ++K
Sbjct: 73 --LHQDWLNGKEYKCKVSNK 90
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG,
immune system; 2.94A {Cricetulus migratorius} PDB:
3mj9_L*
Length = 213
Score = 28.9 bits (65), Expect = 0.26
Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 8/76 (10%)
Query: 20 LRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIH-----SGGRYSITTAGALHIRDT 74
L+ N A L C I + + + W +G + + S +Y T+ +
Sbjct: 127 LKTNQATLVCMINGFYPADVAVTWEADGTPITQGVKTTQPSKSDSKYMATSYLTMTADAW 186
Query: 75 GMEDSYIRYYCQTTHK 90
+++ C+ TH
Sbjct: 187 KSRNTF---ICKVTHG 199
>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response,
immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1
PDB: 1h5b_C 1h5b_B
Length = 113
Score = 28.4 bits (64), Expect = 0.28
Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 17/84 (20%)
Query: 19 VLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEA-RSIIHSG------GRYSITTAGA--- 68
+ G + L+CN + W R+ + S+ + GR
Sbjct: 13 LHEGTDSALRCN-FTTTMRSV--QWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERAR 69
Query: 69 ---LHIRDTGMEDSYIRYYCQTTH 89
LHIRD +EDS Y+C
Sbjct: 70 YSTLHIRDAQLEDSGT-YFCAAEA 92
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 28.4 bits (63), Expect = 0.30
Identities = 20/117 (17%), Positives = 28/117 (23%), Gaps = 34/117 (29%)
Query: 16 NTFVLRGNIAVLQCNI-----PAYNHNLLLIAWLREGVSEARS-----------IIHSGG 59
+ G L C P I W EG +H
Sbjct: 30 SQQRWVGGSVELHCEAVGSPVPE-------IQWWFEGQGPNDICSQLWDGARLDRVHIHA 82
Query: 60 RYSITTAGALHIRDTGMEDSYIRYYC---------QTTHKLTGERKISPPSQVMVSE 107
Y A + I ED+ Y C T + + + V+V E
Sbjct: 83 TYHQHAASTISIDTLVEEDTGT-YECRASNDPDRNHLTRAPR-VKWVRAQAVVLVLE 137
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 28.4 bits (63), Expect = 0.45
Identities = 9/77 (11%), Positives = 17/77 (22%), Gaps = 9/77 (11%)
Query: 16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG------VSEARSIIHSGGRYSITTAGAL 69
+ V L C + + W V I ++ +
Sbjct: 10 DVQVPENESIKLTC--TYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGI 67
Query: 70 HIRDTGMEDSYIRYYCQ 86
+D+ Y C
Sbjct: 68 TFSSVTRKDNGE-YTCM 83
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 28.2 bits (63), Expect = 0.51
Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 12/75 (16%)
Query: 14 TGNTFVLRGNIAVLQCN---IPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALH 70
+ + G +A L+C + + + WL S R S+ G L+
Sbjct: 359 PRDLNISEGRMAELKCRTPPMSS-------VKWLLPN-GTVLSHASRHPRISVLNDGTLN 410
Query: 71 IRDTGMEDSYIRYYC 85
+ D+ Y C
Sbjct: 411 FSHVLLSDTG-VYTC 424
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 28.1 bits (63), Expect = 0.52
Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 4/66 (6%)
Query: 14 TGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRD 73
FV G+ C A I WL + S GR ++ G L +R
Sbjct: 392 AQQVFVDEGHTVQFVCR--ADGDPPPAILWLSPRKHLVSA--KSNGRLTVFPDGTLEVRY 447
Query: 74 TGMEDS 79
++D+
Sbjct: 448 AQVQDN 453
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 28.2 bits (62), Expect = 0.54
Identities = 12/78 (15%), Positives = 21/78 (26%), Gaps = 12/78 (15%)
Query: 19 VLRGNIAVLQCNIPAYNHNLLLIAWLREG----------VSEARSIIHSGGRYSITTAGA 68
V G+ L CN + W G + S+ + + T
Sbjct: 221 VDLGSQIQLICN--VTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITV 278
Query: 69 LHIRDTGMEDSYIRYYCQ 86
L+I + + C
Sbjct: 279 LNISEIESRFYKHPFTCF 296
Score = 27.8 bits (61), Expect = 0.88
Identities = 9/81 (11%), Positives = 24/81 (29%), Gaps = 10/81 (12%)
Query: 19 VLRGNIAVLQCNIPAY----NHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDT 74
+ L C + N+ L + W ++ + + L + +
Sbjct: 115 LPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKP-----LLLDNIHFSGVKDRLIVMNV 169
Query: 75 GMEDSYIRYYCQTTHKLTGER 95
+ Y C ++ G++
Sbjct: 170 AEKHRG-NYTCHASYTYLGKQ 189
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune
system, antibody, ENA11His antibody, immunoglobulin
domain; 2.75A {Mus musculus}
Length = 254
Score = 28.2 bits (63), Expect = 0.58
Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 12/80 (15%)
Query: 19 VLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHS-------GGRYSITTAGALHI 71
L A + C + + + + W +G +++S YS++ L +
Sbjct: 166 QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMS--STLTL 223
Query: 72 RDTGME-DSYIRYYCQTTHK 90
T E + + Y C+ THK
Sbjct: 224 --TKDEYERHNSYTCEATHK 241
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm,
mouse IGG, zinc-finger, DNA-binding, RNA-binding,
tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC;
1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Length = 207
Score = 27.9 bits (62), Expect = 0.59
Identities = 5/55 (9%), Positives = 12/55 (21%), Gaps = 8/55 (14%)
Query: 41 IAWLREGVSEARSII-----HSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK 90
+W + V + + L I + + C+
Sbjct: 39 FSWFVDDVEVHTAQTKPREEQFNSTFRSV--SELPI-MHQDWLNGKEFKCRVNSA 90
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 27.5 bits (61), Expect = 0.60
Identities = 14/81 (17%), Positives = 21/81 (25%), Gaps = 18/81 (22%)
Query: 16 NTFVLRGNIAVLQCNI-----PAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALH 70
+ V +G A L C P I W + G + +G+L
Sbjct: 18 DLIVSKGEPATLNCKAEGRPTPT-------IEWYKGGERVETDKDDPRSHRMLLPSGSLF 70
Query: 71 IRD-----TGMEDSYIRYYCQ 86
D + Y C
Sbjct: 71 FLRIVHGRKSRPDEGV-YVCV 90
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin,
glycosylation, immune system; HET: NAG FUC MAN GAL;
2.13A {Mus musculus}
Length = 218
Score = 28.0 bits (62), Expect = 0.61
Identities = 8/56 (14%), Positives = 15/56 (26%), Gaps = 10/56 (17%)
Query: 41 IAWLREGVSEARSII-----HSGGRYSITTAGALHIRDTGME-DSYIRYYCQTTHK 90
I+W V + + L I + S + C+ +K
Sbjct: 47 ISWFVNNVEVHTAQTQTHREDYNSTIRVV--STLPI--QHQDWMSGKEFKCKVNNK 98
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 28.0 bits (62), Expect = 0.64
Identities = 6/56 (10%), Positives = 13/56 (23%), Gaps = 10/56 (17%)
Query: 41 IAWLREGVSEARSII-----HSGGRYSITTAGALHIRDTGME-DSYIRYYCQTTHK 90
+W + V + S L I + + + C+
Sbjct: 53 FSWFIDDVEVHTAQTHAPEKQSNSTLRSV--SELPI--VERDWLNGKTFKCKVNSG 104
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1
neutralizing antibody, GP120, immune system; HET: PCA
MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L*
2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A*
1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A
1mcl_A* 1mcn_A* 1mcq_A 1mcr_A ...
Length = 211
Score = 27.8 bits (62), Expect = 0.74
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 11/78 (14%)
Query: 20 LRGNIAVLQCNIPAYNHNLLLIAW------LREGVSEARSIIHSGGRYSITTAGALHIRD 73
L+ N A L C I + + +AW ++ GV S +Y+ ++ +L
Sbjct: 124 LQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSL---- 179
Query: 74 TGME-DSYIRYYCQTTHK 90
T + S+ Y CQ TH+
Sbjct: 180 TPEQWKSHRSYSCQVTHE 197
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus}
SCOP: b.1.1.1 b.1.1.2
Length = 185
Score = 27.5 bits (61), Expect = 0.74
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 6/36 (16%)
Query: 59 GRYSITTAGA-----LHIRDTGMEDSYIRYYCQTTH 89
GR++I LHI D+ DS Y+C +
Sbjct: 59 GRFTIFFNKREKKFSLHIADSQPGDSAT-YFCAASD 93
>3qjh_A 5C.C7 alpha chain; immunoglobulin domain, T cell receptor, immune
system; 1.90A {Mus musculus} PDB: 3qiu_C* 3qiw_C* 3qjf_A
3qib_C 2ial_A 2iam_C 2ian_D 3rug_E* 3axl_A
Length = 205
Score = 27.4 bits (60), Expect = 0.99
Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 16/100 (16%)
Query: 19 VLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEA-RSIIH------SGGRYSITTAGA--- 68
+ G + L+CN + + + W R+ + ++ + GR
Sbjct: 15 LHEGTGSALRCN---FTTTMRAVQWFRKNSRGSLINLFYLASGTKENGRLKSAFDSKERY 71
Query: 69 --LHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVS 106
LHIRD +EDS Y+C T + +++ V
Sbjct: 72 STLHIRDAQLEDSGT-YFCAAEASNTNKVVFGTGTRLQVL 110
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 26.9 bits (59), Expect = 1.2
Identities = 12/82 (14%), Positives = 23/82 (28%), Gaps = 10/82 (12%)
Query: 16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTG 75
T G+ +L C++ + WL+ GV ++ +
Sbjct: 7 TTVEDLGSKILLTCSLNDSATEVTGHRWLKGGV-----VLKE----DALPGQKTEFKVDS 57
Query: 76 MEDSYIRYYCQTTHKLTGERKI 97
+ Y C + G I
Sbjct: 58 DDQWG-EYSCVFLPEPMGTANI 78
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine;
HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Length = 240
Score = 26.8 bits (59), Expect = 1.3
Identities = 9/75 (12%), Positives = 20/75 (26%), Gaps = 8/75 (10%)
Query: 21 RGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSII-----HSGGRYSITTAGALHIRDTG 75
R ++ + W +GV + Y + L +
Sbjct: 40 RTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVV--SVLTVLHQD 97
Query: 76 MEDSYIRYYCQTTHK 90
+ Y C+ ++K
Sbjct: 98 WLN-GKEYKCKVSNK 111
Score = 25.3 bits (55), Expect = 4.9
Identities = 4/24 (16%), Positives = 4/24 (16%)
Query: 83 YYCQTTHKLTGERKISPPSQVMVS 106
C TH V
Sbjct: 3 KSCDKTHTCPPCPAPELLGGPSVF 26
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR,
VEGF receptor, cancer, immune system-transfer complex;
HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 26.6 bits (58), Expect = 1.4
Identities = 10/70 (14%), Positives = 14/70 (20%), Gaps = 6/70 (8%)
Query: 16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSE------ARSIIHSGGRYSITTAGAL 69
+ G VL C + + W R + G L
Sbjct: 17 GIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTL 76
Query: 70 HIRDTGMEDS 79
I D
Sbjct: 77 TIDGVTRSDQ 86
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1, isoform 2; hydrolase, immunoglobulin domain,
nucleus, protease; 2.80A {Homo sapiens}
Length = 218
Score = 26.8 bits (59), Expect = 1.7
Identities = 13/71 (18%), Positives = 20/71 (28%), Gaps = 20/71 (28%)
Query: 19 VLRGNIAVLQCN---IPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTG 75
VL G L C P + W + I +G L
Sbjct: 30 VLAGQFVKLCCRATGHPF-----VQYQWFKMNKE-----IPNG------NTSELIFNAVH 73
Query: 76 MEDSYIRYYCQ 86
++D+ Y C+
Sbjct: 74 VKDA-GFYVCR 83
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 26.1 bits (57), Expect = 1.8
Identities = 9/72 (12%), Positives = 18/72 (25%), Gaps = 8/72 (11%)
Query: 16 NTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARS-------IIHSGGRYSITTAG 67
V G + A + I W + + S + + R+S
Sbjct: 16 GGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTF 75
Query: 68 ALHIRDTGMEDS 79
+ I +
Sbjct: 76 EMQIIKAKDNFA 87
>3kq5_A Hypothetical cytosolic protein; structural genomics, unknown
function, PSI-2, protein struct initiative; 2.00A
{Coxiella burnetii}
Length = 393
Score = 26.8 bits (58), Expect = 1.9
Identities = 10/51 (19%), Positives = 21/51 (41%)
Query: 32 PAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIR 82
PA H + WL+E ++ + +++ + + TG+ YI
Sbjct: 241 PATAHADAFLNWLKEALATNQIKVNTSDAGVHVIPEGVFLEKTGIFKQYID 291
>3r79_A Uncharacterized protein; PSI-biology, structural genomics, NEW YORK
structural genomi research consortium, TIM barrel; HET:
PLP; 1.90A {Agrobacterium tumefaciens}
Length = 244
Score = 26.4 bits (59), Expect = 1.9
Identities = 9/19 (47%), Positives = 11/19 (57%), Gaps = 3/19 (15%)
Query: 3 MGDMSSDYE--INTGNTFV 19
MG MS D+E + G T V
Sbjct: 195 MG-MSGDFETAVEFGATSV 212
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 26.8 bits (58), Expect = 2.0
Identities = 13/84 (15%), Positives = 23/84 (27%), Gaps = 10/84 (11%)
Query: 13 NTGNTFVLRGNIAVLQCNI--PAYNHNLLLIAWLREG----VSEARSIIHSGGRYSITTA 66
+ G ++ C + + + W +G I+ +S T
Sbjct: 232 DHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTED 291
Query: 67 GA----LHIRDTGMEDSYIRYYCQ 86
L I+ ED Y C
Sbjct: 292 ETRTQILSIKKVTSEDLKRSYVCH 315
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 26.3 bits (58), Expect = 2.4
Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 15/77 (19%)
Query: 14 TGNTFVLRGNIAVLQCN----IPAYNHNLLLIAWLR-EGVSEARSIIHSGGRYSITTAGA 68
+ V G A L+C + + ++W+ G R ++ + G
Sbjct: 348 PADLNVTEGMAAELKCRASTSLTS-------VSWITPNGTVMTHG--AYKVRIAVLSDGT 398
Query: 69 LHIRDTGMEDSYIRYYC 85
L+ + ++D+ Y C
Sbjct: 399 LNFTNVTVQDTG-MYTC 414
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 25.6 bits (56), Expect = 2.5
Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Query: 34 YNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTG 93
Y + ++ W S+ G +GAL+I ED+ Y + K
Sbjct: 41 YTFDQKIVEW-DSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDNST-YIMRVLKKTGN 98
Query: 94 ERKIS 98
E++
Sbjct: 99 EQEWK 103
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 25.2 bits (55), Expect = 3.5
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 67 GALHIRDTGMEDSYIRYYCQTTHKLTGERKIS 98
GALHI + ED YY + + E KI+
Sbjct: 73 GALHISNVRKEDKGT-YYMRVLRETENELKIT 103
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2,
alzheimer'S disease, immunotherapies, APP, immune
system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B*
1h3p_L
Length = 252
Score = 25.8 bits (57), Expect = 3.7
Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 12/79 (15%)
Query: 20 LRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHS-------GGRYSITTAGALHI- 71
L A + C + + + + W +G +++S YS++ L +
Sbjct: 163 LTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMS--STLTLT 220
Query: 72 RDTGMEDSYIRYYCQTTHK 90
+D + Y C+ THK
Sbjct: 221 KDEYE--RHNSYTCEATHK 237
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 25.9 bits (56), Expect = 3.7
Identities = 7/51 (13%), Positives = 12/51 (23%), Gaps = 6/51 (11%)
Query: 41 IAWLREGV-----SEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQ 86
+ WL G S + G L + ++ Y
Sbjct: 278 LRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGN-YTLL 327
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune
system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L
2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L*
1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L*
1mfb_L* ...
Length = 212
Score = 25.3 bits (56), Expect = 5.4
Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 10/87 (11%)
Query: 20 LRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIH------SGGRYSITTAGALHIRD 73
L A L C I + ++ + W +G + S +Y ++ L R
Sbjct: 128 LSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARA 187
Query: 74 TGMEDSYIRYYCQTTHK-LTGERKISP 99
SY CQ TH+ + + +S
Sbjct: 188 WERHSSY---SCQVTHEGHSSNKTLSR 211
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid
factor IGG1-FC, immunoglobulin C region, membrane,
glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG
GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 234
Score = 25.1 bits (55), Expect = 5.5
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 11/78 (14%)
Query: 20 LRGNIAVLQCNIPAYNHNLLLIAW------LREGVSEARSIIHSGGRYSITTAGALHIRD 73
L+ N A L C I + + +AW ++ GV + S +Y+ + L +
Sbjct: 148 LQANKATLVCLISDFFPGAVTVAWKADGAPVKAGVETTKPSKQSNNKYA--ASSYLSL-- 203
Query: 74 TGME-DSYIRYYCQTTHK 90
T + S+ Y CQ TH+
Sbjct: 204 TPEQWKSHRSYSCQVTHE 221
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 24.9 bits (54), Expect = 6.6
Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Query: 38 LLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKI 97
LI +EG + + + ++ I + D+ YYC K + + +
Sbjct: 46 RELIYNQKEGHFPRVTTVSESTKRENMDF-SISISNITPADAGT-YYCVKFRKGSPDTEF 103
Query: 98 SPPSQVMVSEIALP 111
+ +S A P
Sbjct: 104 KSGAGTELSVRAKP 117
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 24.6 bits (53), Expect = 8.2
Identities = 15/110 (13%), Positives = 27/110 (24%), Gaps = 30/110 (27%)
Query: 22 GNIAVLQC---NIPAYNHNLLLIAWLRE---------------GVSEARSIIHSGGRYSI 63
G+ L C + W G S+ S
Sbjct: 10 GDTVELTCTASQKKSIQ-----FHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 64
Query: 64 TTAGALHIRDTGMEDSYIRYYCQ------TTHKLTGERKISPPSQVMVSE 107
L I++ +EDS Y C+ L + + ++ +
Sbjct: 65 QGNFPLIIKNLKIEDSDT-YICEVEDQKEEVQLLVFGLTANSDTHLLQGQ 113
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.395
Gapped
Lambda K H
0.267 0.0574 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,716,097
Number of extensions: 88846
Number of successful extensions: 384
Number of sequences better than 10.0: 1
Number of HSP's gapped: 368
Number of HSP's successfully gapped: 155
Length of query: 114
Length of database: 6,701,793
Length adjustment: 77
Effective length of query: 37
Effective length of database: 4,551,876
Effective search space: 168419412
Effective search space used: 168419412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.8 bits)