RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9140
(114 letters)
>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 98
Score = 30.0 bits (67), Expect = 0.023
Identities = 12/71 (16%), Positives = 19/71 (26%), Gaps = 6/71 (8%)
Query: 25 AVLQCNIPAYNHNLLLIAWLREGVSEAR-----SIIHSGGRYSITTAGALHIRDTGMEDS 79
L ++ + W R A G + I G L I++ +DS
Sbjct: 13 INLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDS 72
Query: 80 YIRYYCQTTHK 90
Y
Sbjct: 73 GT-YNVTVYST 82
>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma
constant domain 1, CH1-gamma {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 101
Score = 28.0 bits (62), Expect = 0.14
Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 10/86 (11%)
Query: 20 LRGNIAVLQCNIPAYNHNLLLIAWLREGVSEA---RSIIHSGGRYSITTAGALHIRDTGM 76
+ L C + Y + +AW +S S + G Y++++ +
Sbjct: 18 AAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAVLQSGLYTLSS--NTTVASGTW 75
Query: 77 EDSYIRYYCQTTHKLTG---ERKISP 99
+ C H + ++KI P
Sbjct: 76 PSA--SVTCLVAHPKSSTAADKKIEP 99
>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant
domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId:
10090]}
Length = 101
Score = 26.9 bits (59), Expect = 0.32
Identities = 12/88 (13%), Positives = 30/88 (34%), Gaps = 12/88 (13%)
Query: 20 LRGNIAVLQCNIPAYNHNLLLIAWLREG-----VSEARSIIHSGGRYSITTAGALHIRDT 74
+ ++ L C I + + + W G + I+ + G Y + + + +
Sbjct: 16 MAKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSN- 74
Query: 75 GMEDSYIRYYCQTTH----KLTGERKIS 98
++ + C H E+ +S
Sbjct: 75 --WEAGNTFTCSVLHEGLHNHHTEKSLS 100
>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal
domain {Human (Homo sapiens), HLA-DQ group [TaxId:
9606]}
Length = 97
Score = 26.5 bits (58), Expect = 0.37
Identities = 8/68 (11%), Positives = 21/68 (30%)
Query: 22 GNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYI 81
+ +L C++ + + + W R E ++ + + + +
Sbjct: 16 NHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGD 75
Query: 82 RYYCQTTH 89
Y C H
Sbjct: 76 VYTCHVEH 83
>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma
constant domain 1, CH1-gamma {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 102
Score = 26.6 bits (58), Expect = 0.46
Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 10/88 (11%)
Query: 20 LRGNIAVLQCNIPAYNHNLLLIAWLREGVSEA---RSIIHSGGRYSITTAGALHIRDTGM 76
G+ L C + Y + + W +S + Y++++ + T
Sbjct: 18 TSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSS----SVTVTSS 73
Query: 77 EDSYIRYYCQTTHKLTG---ERKISPPS 101
C H + ++KI P
Sbjct: 74 TWPSQSITCNVAHPASSTKVDKKIEPRG 101
>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa
constant domain, CL-kappa {Human (Homo sapiens) [TaxId:
9606]}
Length = 107
Score = 24.6 bits (53), Expect = 2.0
Identities = 10/76 (13%), Positives = 27/76 (35%), Gaps = 6/76 (7%)
Query: 20 LRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHS-----GGRYSITTAGALHIRDT 74
L+ A + C + + + W + ++ + S + + + L +
Sbjct: 18 LKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTL-SK 76
Query: 75 GMEDSYIRYYCQTTHK 90
+ + Y C+ TH+
Sbjct: 77 ADYEKHKVYACEVTHQ 92
>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa
variable domain, VL-kappa {Mouse (Mus musculus),
cluster 3.2 [TaxId: 10090]}
Length = 104
Score = 24.3 bits (52), Expect = 2.5
Identities = 16/45 (35%), Positives = 17/45 (37%), Gaps = 7/45 (15%)
Query: 43 WLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT 87
L GV S SG YS L I ED+ YYCQ
Sbjct: 51 KLASGVPVRFSGSGSGTSYS------LTISSMETEDA-ATYYCQQ 88
>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1
(VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 24.2 bits (51), Expect = 3.0
Identities = 12/81 (14%), Positives = 28/81 (34%), Gaps = 2/81 (2%)
Query: 22 GNIAVLQCNIP-AYNHNLLLIAWLREG-VSEARSIIHSGGRYSITTAGALHIRDTGMEDS 79
G ++C++ Y + L I L+ + +++ + R S+ T +ED
Sbjct: 16 GKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDI 75
Query: 80 YIRYYCQTTHKLTGERKISPP 100
C+ + +
Sbjct: 76 GKVLVCRAKLHIDEMDSVPTV 96
>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 105
Score = 23.3 bits (49), Expect = 5.5
Identities = 7/38 (18%), Positives = 11/38 (28%), Gaps = 1/38 (2%)
Query: 69 LHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVS 106
+ I D Y C K ++V +S
Sbjct: 67 IVILALRPSDEG-TYECVVLKYEKDAFKREHLAEVTLS 103
>d2ipqx1 a.4.5.74 (X:396-528) Hypothetical protein STY4665
{Salmonella typhi [TaxId: 90370]}
Length = 133
Score = 23.3 bits (50), Expect = 7.1
Identities = 10/54 (18%), Positives = 24/54 (44%)
Query: 41 IAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGE 94
+WLR+G+ E +++ T G + I G+ +++ + ++ E
Sbjct: 11 WSWLRDGLREGDIPVNTADACVHLTCGFVFISVPGVFFLFLKSHSRSCSSGLKE 64
>d1ct5a_ c.1.6.2 (A:) "Hypothetical" protein ybl036c {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 23.3 bits (49), Expect = 9.1
Identities = 8/19 (42%), Positives = 10/19 (52%), Gaps = 3/19 (15%)
Query: 3 MGDMSSDYE--INTGNTFV 19
MG MS+D+ I G V
Sbjct: 219 MG-MSADFREAIRQGTAEV 236
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.395
Gapped
Lambda K H
0.267 0.0619 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 408,612
Number of extensions: 15927
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 13
Length of query: 114
Length of database: 2,407,596
Length adjustment: 72
Effective length of query: 42
Effective length of database: 1,419,036
Effective search space: 59599512
Effective search space used: 59599512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.1 bits)