Query psy9141
Match_columns 379
No_of_seqs 329 out of 2442
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 20:01:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9141.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9141hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06617 2-octaprenyl-6-methox 100.0 4.9E-36 1.1E-40 292.3 18.3 314 7-348 2-358 (374)
2 COG0654 UbiH 2-polyprenyl-6-me 100.0 9.5E-36 2.1E-40 291.4 20.3 318 6-350 2-372 (387)
3 PRK08849 2-octaprenyl-3-methyl 100.0 2.6E-35 5.6E-40 288.2 20.6 333 4-367 1-384 (384)
4 PRK08850 2-octaprenyl-6-methox 100.0 1.6E-35 3.5E-40 291.6 17.6 336 4-368 2-393 (405)
5 PRK08013 oxidoreductase; Provi 100.0 3E-34 6.6E-39 282.1 17.5 337 4-367 1-392 (400)
6 PRK08773 2-octaprenyl-3-methyl 100.0 5.6E-34 1.2E-38 279.5 18.0 322 1-347 1-376 (392)
7 PRK07494 2-octaprenyl-6-methox 100.0 4.2E-34 9E-39 280.0 17.0 333 1-368 3-388 (388)
8 TIGR01989 COQ6 Ubiquinone bios 100.0 5.8E-34 1.2E-38 283.1 18.1 318 7-345 1-425 (437)
9 PRK05714 2-octaprenyl-3-methyl 100.0 4.4E-34 9.5E-39 281.4 16.3 332 6-367 2-395 (405)
10 PRK07364 2-octaprenyl-6-methox 100.0 1.9E-33 4E-38 277.8 20.0 335 5-368 17-405 (415)
11 PRK06185 hypothetical protein; 100.0 2.8E-33 6E-38 275.9 20.5 337 1-370 1-396 (407)
12 PRK08020 ubiF 2-octaprenyl-3-m 100.0 1.1E-32 2.4E-37 270.2 20.0 337 5-367 4-391 (391)
13 PRK06183 mhpA 3-(3-hydroxyphen 100.0 8.5E-32 1.8E-36 274.2 22.6 310 4-331 8-365 (538)
14 KOG2614|consensus 100.0 7E-32 1.5E-36 253.5 20.1 285 7-305 3-325 (420)
15 PRK07588 hypothetical protein; 100.0 1.7E-31 3.6E-36 261.9 20.2 317 8-347 2-368 (391)
16 PRK06834 hypothetical protein; 100.0 3.8E-31 8.2E-36 265.5 23.1 293 4-314 1-320 (488)
17 PRK07333 2-octaprenyl-6-methox 100.0 1.6E-31 3.5E-36 262.9 19.0 332 7-368 2-391 (403)
18 PRK05868 hypothetical protein; 100.0 2.3E-30 5E-35 252.0 25.9 273 8-304 3-318 (372)
19 PRK06184 hypothetical protein; 100.0 1.9E-30 4.1E-35 262.3 26.2 290 4-314 1-335 (502)
20 PRK06475 salicylate hydroxylas 100.0 3.2E-30 7E-35 253.6 25.1 297 7-318 3-347 (400)
21 PRK07190 hypothetical protein; 100.0 1.5E-30 3.3E-35 261.0 22.6 293 1-313 1-329 (487)
22 PRK06753 hypothetical protein; 100.0 9.3E-30 2E-34 247.9 26.9 315 8-347 2-357 (373)
23 PRK08294 phenol 2-monooxygenas 100.0 4.2E-30 9E-35 264.9 25.4 303 5-326 31-414 (634)
24 PRK07045 putative monooxygenas 100.0 5.5E-30 1.2E-34 250.9 24.9 162 1-174 1-184 (388)
25 PRK06126 hypothetical protein; 100.0 1.1E-29 2.3E-34 259.4 27.9 165 2-173 3-205 (545)
26 PRK06996 hypothetical protein; 100.0 3.8E-31 8.3E-36 259.9 16.5 322 5-348 10-380 (398)
27 PRK07236 hypothetical protein; 100.0 6.3E-30 1.4E-34 250.3 24.4 164 1-174 1-171 (386)
28 PRK08244 hypothetical protein; 100.0 5.5E-30 1.2E-34 258.5 24.4 293 6-318 2-331 (493)
29 PRK08243 4-hydroxybenzoate 3-m 100.0 5.1E-30 1.1E-34 251.5 23.4 153 6-164 2-170 (392)
30 PRK09126 hypothetical protein; 100.0 6E-31 1.3E-35 258.0 16.3 321 5-347 2-374 (392)
31 TIGR01984 UbiH 2-polyprenyl-6- 100.0 3E-30 6.6E-35 252.1 19.7 316 8-348 1-368 (382)
32 PTZ00367 squalene epoxidase; P 100.0 1.3E-29 2.9E-34 256.6 24.3 278 4-304 31-373 (567)
33 PRK08132 FAD-dependent oxidore 100.0 2.7E-29 5.9E-34 256.4 23.5 164 4-175 21-204 (547)
34 TIGR01988 Ubi-OHases Ubiquinon 100.0 1.5E-29 3.2E-34 247.1 19.7 279 8-304 1-312 (385)
35 TIGR02360 pbenz_hydroxyl 4-hyd 100.0 6.4E-29 1.4E-33 243.4 23.7 152 7-164 3-170 (390)
36 PRK05732 2-octaprenyl-6-methox 100.0 1.1E-29 2.3E-34 249.2 18.0 320 4-348 1-377 (395)
37 PRK08163 salicylate hydroxylas 100.0 5.8E-29 1.3E-33 244.2 22.6 321 5-349 3-376 (396)
38 PRK06847 hypothetical protein; 100.0 7.7E-29 1.7E-33 241.6 23.2 290 1-315 1-335 (375)
39 PRK07538 hypothetical protein; 100.0 4.1E-28 8.9E-33 239.6 25.8 159 8-173 2-182 (413)
40 PLN02985 squalene monooxygenas 100.0 2.7E-28 5.8E-33 245.7 23.4 276 5-304 42-362 (514)
41 PF01494 FAD_binding_3: FAD bi 100.0 3.3E-29 7.2E-34 241.0 14.4 151 7-164 2-179 (356)
42 PRK07608 ubiquinone biosynthes 100.0 4E-28 8.6E-33 237.6 20.7 318 6-348 5-374 (388)
43 TIGR03219 salicylate_mono sali 100.0 3.4E-27 7.4E-32 233.1 21.4 147 8-164 2-166 (414)
44 PLN02927 antheraxanthin epoxid 99.9 2.6E-25 5.6E-30 226.9 25.3 283 5-304 80-403 (668)
45 KOG3855|consensus 99.9 1.6E-26 3.4E-31 216.0 8.5 318 5-340 35-461 (481)
46 PRK11445 putative oxidoreducta 99.9 9.1E-23 2E-27 197.2 24.9 154 7-164 2-164 (351)
47 TIGR02032 GG-red-SF geranylger 99.9 2.3E-22 5E-27 188.9 23.1 143 7-163 1-154 (295)
48 TIGR02023 BchP-ChlP geranylger 99.9 1.1E-20 2.5E-25 185.1 24.7 143 7-163 1-161 (388)
49 PLN00093 geranylgeranyl diphos 99.9 9.2E-20 2E-24 181.2 23.1 144 6-163 39-205 (450)
50 KOG1298|consensus 99.8 5.3E-20 1.1E-24 170.8 18.0 279 5-304 44-362 (509)
51 PRK08255 salicylyl-CoA 5-hydro 99.8 2.2E-20 4.8E-25 197.0 17.5 133 8-164 2-148 (765)
52 COG0644 FixC Dehydrogenases (f 99.8 1.2E-18 2.6E-23 171.2 22.1 147 5-164 2-159 (396)
53 PRK10015 oxidoreductase; Provi 99.8 3.1E-18 6.7E-23 169.7 22.8 151 1-163 1-170 (429)
54 TIGR02028 ChlP geranylgeranyl 99.8 3.1E-18 6.6E-23 168.3 22.5 143 7-163 1-166 (398)
55 PRK10157 putative oxidoreducta 99.8 4.1E-18 8.9E-23 168.9 21.0 146 1-163 1-170 (428)
56 TIGR01790 carotene-cycl lycope 99.7 6.3E-17 1.4E-21 158.5 17.1 135 8-161 1-145 (388)
57 PLN02463 lycopene beta cyclase 99.7 1.3E-15 2.7E-20 151.1 19.2 139 5-161 27-173 (447)
58 TIGR01789 lycopene_cycl lycope 99.7 4.2E-15 9E-20 144.6 18.3 131 8-158 1-139 (370)
59 PLN02697 lycopene epsilon cycl 99.6 3.9E-14 8.5E-19 142.7 24.4 132 6-157 108-248 (529)
60 PF04820 Trp_halogenase: Trypt 99.6 2.5E-15 5.4E-20 149.7 12.3 144 8-163 1-217 (454)
61 PF05834 Lycopene_cycl: Lycope 99.6 3.3E-13 7.3E-18 131.6 20.2 266 8-304 1-290 (374)
62 COG2081 Predicted flavoprotein 99.4 3.5E-13 7.6E-18 127.5 9.2 145 4-158 1-168 (408)
63 PRK04176 ribulose-1,5-biphosph 99.4 3.8E-12 8.2E-17 117.5 13.6 145 5-164 24-180 (257)
64 TIGR00292 thiazole biosynthesi 99.4 8.3E-12 1.8E-16 115.0 14.7 146 5-165 20-178 (254)
65 PRK13369 glycerol-3-phosphate 99.3 1.1E-11 2.3E-16 125.6 10.4 155 1-163 1-222 (502)
66 PRK12266 glpD glycerol-3-phosp 99.3 1.3E-10 2.9E-15 117.7 16.7 44 1-44 1-44 (508)
67 PF01266 DAO: FAD dependent ox 99.3 3.1E-11 6.8E-16 116.0 11.1 47 108-159 158-205 (358)
68 PF03486 HI0933_like: HI0933-l 99.3 5.6E-11 1.2E-15 116.5 12.7 142 7-158 1-167 (409)
69 PRK11259 solA N-methyltryptoph 99.3 1.1E-10 2.3E-15 113.8 14.6 46 108-158 160-205 (376)
70 TIGR01377 soxA_mon sarcosine o 99.2 1.7E-10 3.7E-15 112.6 15.1 51 108-163 156-207 (380)
71 COG1635 THI4 Ribulose 1,5-bisp 99.2 2.4E-10 5.2E-15 99.7 12.7 142 6-163 30-184 (262)
72 PRK05192 tRNA uridine 5-carbox 99.2 3.3E-10 7.1E-15 114.9 15.2 143 4-157 2-157 (618)
73 COG0579 Predicted dehydrogenas 99.2 2.3E-10 4.9E-15 111.6 13.0 157 4-163 1-218 (429)
74 PRK11101 glpA sn-glycerol-3-ph 99.2 2.8E-10 6.2E-15 116.3 14.4 39 4-42 4-42 (546)
75 COG0578 GlpA Glycerol-3-phosph 99.2 1.7E-10 3.8E-15 114.6 12.0 154 4-163 10-232 (532)
76 PF01946 Thi4: Thi4 family; PD 99.2 6.6E-11 1.4E-15 103.8 7.8 140 6-161 17-169 (230)
77 PF12831 FAD_oxidored: FAD dep 99.2 2.7E-11 5.8E-16 120.2 5.1 148 8-160 1-153 (428)
78 PF13738 Pyr_redox_3: Pyridine 99.1 1.4E-10 3E-15 103.0 8.5 131 10-158 1-139 (203)
79 PRK11728 hydroxyglutarate oxid 99.1 4.9E-10 1.1E-14 110.1 12.8 51 108-163 160-211 (393)
80 PRK12409 D-amino acid dehydrog 99.1 7.9E-10 1.7E-14 109.2 13.7 51 106-158 206-259 (410)
81 PRK01747 mnmC bifunctional tRN 99.1 1E-09 2.2E-14 115.0 14.4 44 111-158 421-464 (662)
82 PRK05257 malate:quinone oxidor 99.1 1E-09 2.2E-14 110.6 13.0 38 4-41 3-42 (494)
83 PRK13339 malate:quinone oxidor 99.1 2E-09 4.3E-14 108.0 13.7 55 108-163 196-254 (497)
84 PRK06481 fumarate reductase fl 99.0 5.3E-09 1.2E-13 106.1 16.4 154 6-163 61-257 (506)
85 PRK09231 fumarate reductase fl 99.0 3.9E-09 8.4E-14 108.7 15.4 153 5-159 3-198 (582)
86 PRK06069 sdhA succinate dehydr 99.0 4.3E-09 9.3E-14 108.4 15.7 154 5-160 4-203 (577)
87 TIGR01320 mal_quin_oxido malat 99.0 2.5E-09 5.5E-14 107.5 13.3 35 7-41 1-37 (483)
88 PTZ00383 malate:quinone oxidor 99.0 2.6E-09 5.7E-14 107.4 13.1 47 112-163 232-280 (497)
89 TIGR00551 nadB L-aspartate oxi 99.0 6.2E-09 1.3E-13 105.2 16.0 154 6-161 2-193 (488)
90 PRK05945 sdhA succinate dehydr 99.0 5.9E-09 1.3E-13 107.3 15.1 154 4-159 1-199 (575)
91 PRK05249 soluble pyridine nucl 99.0 4.3E-09 9.2E-14 105.6 13.8 49 108-160 227-275 (461)
92 PLN02172 flavin-containing mon 99.0 2E-09 4.3E-14 107.6 11.2 150 4-158 8-174 (461)
93 TIGR01812 sdhA_frdA_Gneg succi 99.0 8.2E-09 1.8E-13 106.2 15.7 151 8-160 1-194 (566)
94 TIGR01813 flavo_cyto_c flavocy 99.0 9.6E-09 2.1E-13 102.4 15.8 36 8-43 1-37 (439)
95 TIGR01176 fum_red_Fp fumarate 99.0 1.2E-08 2.5E-13 105.0 16.5 152 6-159 3-197 (580)
96 TIGR03329 Phn_aa_oxid putative 99.0 1.9E-09 4.2E-14 108.1 10.5 36 6-41 24-61 (460)
97 TIGR03364 HpnW_proposed FAD de 99.0 7.3E-09 1.6E-13 100.7 13.6 35 7-41 1-35 (365)
98 PRK06175 L-aspartate oxidase; 99.0 1.4E-08 3E-13 101.0 15.5 151 5-158 3-190 (433)
99 TIGR01373 soxB sarcosine oxida 99.0 8.9E-09 1.9E-13 101.6 13.8 37 5-41 29-67 (407)
100 PRK08274 tricarballylate dehyd 99.0 1.9E-08 4.1E-13 101.1 16.3 36 5-40 3-38 (466)
101 PRK00711 D-amino acid dehydrog 99.0 3.7E-09 8E-14 104.5 10.9 47 107-158 211-258 (416)
102 PLN02661 Putative thiazole syn 99.0 1.3E-08 2.9E-13 96.8 14.0 137 5-158 91-245 (357)
103 PRK06452 sdhA succinate dehydr 98.9 2.4E-08 5.1E-13 102.6 16.2 153 5-158 4-199 (566)
104 PLN02464 glycerol-3-phosphate 98.9 9.3E-09 2E-13 106.6 13.2 39 5-43 70-108 (627)
105 COG2072 TrkA Predicted flavopr 98.9 7.9E-09 1.7E-13 102.8 12.2 39 4-42 6-45 (443)
106 PRK07804 L-aspartate oxidase; 98.9 2.2E-08 4.7E-13 102.4 15.6 38 5-42 15-52 (541)
107 PF00890 FAD_binding_2: FAD bi 98.9 1.1E-08 2.4E-13 101.2 13.1 150 8-158 1-204 (417)
108 PRK09078 sdhA succinate dehydr 98.9 3.2E-08 6.9E-13 102.3 16.5 37 6-42 12-48 (598)
109 COG1233 Phytoene dehydrogenase 98.9 9E-09 2E-13 103.8 12.0 39 4-42 1-39 (487)
110 PRK08071 L-aspartate oxidase; 98.9 2E-08 4.4E-13 101.9 14.4 151 5-158 2-191 (510)
111 TIGR01292 TRX_reduct thioredox 98.9 1.4E-08 3E-13 95.5 12.4 111 7-157 1-112 (300)
112 PRK08641 sdhA succinate dehydr 98.9 5.9E-08 1.3E-12 100.1 17.4 41 4-44 1-41 (589)
113 COG3380 Predicted NAD/FAD-depe 98.9 5.2E-09 1.1E-13 94.2 8.2 136 8-152 3-155 (331)
114 PTZ00139 Succinate dehydrogena 98.9 3.9E-08 8.3E-13 101.9 16.0 151 6-158 29-230 (617)
115 PRK08958 sdhA succinate dehydr 98.9 4.3E-08 9.3E-13 101.1 16.2 154 4-159 5-208 (588)
116 PRK07803 sdhA succinate dehydr 98.9 3.9E-08 8.5E-13 102.1 16.0 38 5-42 7-44 (626)
117 PF08491 SE: Squalene epoxidas 98.9 7.5E-09 1.6E-13 94.7 9.1 36 269-304 130-166 (276)
118 PF01134 GIDA: Glucose inhibit 98.9 1.1E-08 2.5E-13 98.6 10.7 139 8-156 1-151 (392)
119 COG0492 TrxB Thioredoxin reduc 98.9 1E-08 2.2E-13 96.7 10.0 114 4-158 1-116 (305)
120 PRK09077 L-aspartate oxidase; 98.9 5.5E-08 1.2E-12 99.3 16.1 155 5-161 7-211 (536)
121 PRK07573 sdhA succinate dehydr 98.9 4E-08 8.7E-13 102.1 14.9 154 5-159 34-234 (640)
122 TIGR00275 flavoprotein, HI0933 98.9 1.3E-08 2.7E-13 100.3 10.4 136 10-157 1-160 (400)
123 PRK06263 sdhA succinate dehydr 98.9 4.9E-08 1.1E-12 100.0 14.9 152 4-158 5-198 (543)
124 PRK06854 adenylylsulfate reduc 98.8 6.1E-08 1.3E-12 100.3 15.6 147 6-158 11-196 (608)
125 PRK08401 L-aspartate oxidase; 98.8 5.3E-08 1.2E-12 97.8 14.6 147 7-161 2-179 (466)
126 PRK12834 putative FAD-binding 98.8 5.7E-08 1.2E-12 99.6 14.9 35 5-39 3-37 (549)
127 PLN00128 Succinate dehydrogena 98.8 7.4E-08 1.6E-12 100.0 15.7 153 6-159 50-252 (635)
128 PRK07121 hypothetical protein; 98.8 6.8E-08 1.5E-12 97.8 15.2 38 6-43 20-57 (492)
129 PRK07057 sdhA succinate dehydr 98.8 1.4E-07 3.1E-12 97.3 17.7 38 5-42 11-48 (591)
130 PRK15317 alkyl hydroperoxide r 98.8 5.3E-08 1.1E-12 99.1 13.9 112 5-157 210-322 (517)
131 PRK07395 L-aspartate oxidase; 98.8 7.2E-08 1.6E-12 98.7 14.3 151 5-158 8-198 (553)
132 PRK08626 fumarate reductase fl 98.8 6.3E-08 1.4E-12 100.9 14.0 39 4-42 3-41 (657)
133 PRK06115 dihydrolipoamide dehy 98.8 1.8E-08 3.9E-13 101.3 9.6 38 4-41 1-38 (466)
134 PRK07512 L-aspartate oxidase; 98.8 5.4E-08 1.2E-12 98.9 13.1 34 5-40 8-41 (513)
135 PLN02815 L-aspartate oxidase 98.8 7.7E-08 1.7E-12 99.0 14.4 151 5-158 28-223 (594)
136 COG1232 HemY Protoporphyrinoge 98.8 6.2E-08 1.3E-12 95.3 13.0 67 8-74 2-79 (444)
137 PRK08010 pyridine nucleotide-d 98.8 1.4E-07 3.1E-12 94.1 15.7 48 108-160 210-257 (441)
138 PRK06370 mercuric reductase; V 98.8 1E-07 2.2E-12 95.7 14.7 36 4-39 3-38 (463)
139 PRK08205 sdhA succinate dehydr 98.8 8.7E-08 1.9E-12 98.8 14.4 37 5-42 4-40 (583)
140 KOG1399|consensus 98.8 2.7E-08 5.9E-13 98.2 9.9 137 4-157 4-153 (448)
141 PRK14694 putative mercuric red 98.8 1.7E-08 3.8E-13 101.4 8.6 39 1-39 1-39 (468)
142 COG0665 DadA Glycine/D-amino a 98.8 3.7E-08 8.1E-13 96.2 10.7 38 5-42 3-40 (387)
143 PRK07843 3-ketosteroid-delta-1 98.8 1.7E-07 3.8E-12 96.1 15.8 39 5-43 6-44 (557)
144 TIGR03140 AhpF alkyl hydropero 98.8 9E-08 2E-12 97.4 13.4 113 5-157 211-323 (515)
145 KOG2820|consensus 98.8 8.8E-08 1.9E-12 88.8 11.7 41 5-45 6-46 (399)
146 PRK07251 pyridine nucleotide-d 98.8 1.9E-07 4.2E-12 93.1 15.2 37 4-40 1-37 (438)
147 PRK06116 glutathione reductase 98.8 1.3E-07 2.8E-12 94.7 14.0 49 108-160 219-268 (450)
148 PRK07818 dihydrolipoamide dehy 98.8 1.6E-07 3.4E-12 94.5 14.7 51 109-160 225-276 (466)
149 TIGR01424 gluta_reduc_2 glutat 98.7 2.1E-07 4.6E-12 93.0 15.3 48 109-160 219-266 (446)
150 TIGR02730 carot_isom carotene 98.7 8.6E-08 1.9E-12 97.1 12.3 53 107-163 239-292 (493)
151 PRK06467 dihydrolipoamide dehy 98.7 4.2E-08 9.1E-13 98.7 9.7 132 5-158 3-149 (471)
152 PRK08275 putative oxidoreducta 98.7 1.3E-07 2.7E-12 97.1 13.2 37 5-41 8-46 (554)
153 TIGR00136 gidA glucose-inhibit 98.7 2E-07 4.4E-12 94.7 13.7 141 7-157 1-154 (617)
154 TIGR01350 lipoamide_DH dihydro 98.7 3.4E-07 7.5E-12 91.9 15.4 50 109-160 223-272 (461)
155 PRK12837 3-ketosteroid-delta-1 98.7 3.6E-07 7.8E-12 92.9 15.6 37 5-42 6-42 (513)
156 PRK05976 dihydrolipoamide dehy 98.7 3E-08 6.6E-13 99.8 7.6 136 5-158 3-155 (472)
157 PRK11883 protoporphyrinogen ox 98.7 3E-07 6.5E-12 91.8 14.5 42 113-158 235-276 (451)
158 PRK10262 thioredoxin reductase 98.7 1.2E-07 2.6E-12 90.5 10.9 38 1-38 1-38 (321)
159 PRK06416 dihydrolipoamide dehy 98.7 5.9E-07 1.3E-11 90.2 16.2 51 108-160 224-275 (462)
160 KOG2853|consensus 98.7 3.3E-07 7.2E-12 85.1 13.0 37 6-42 86-126 (509)
161 COG1231 Monoamine oxidase [Ami 98.7 1.8E-07 3.9E-12 90.5 11.8 39 4-42 5-43 (450)
162 PF00743 FMO-like: Flavin-bind 98.7 4E-08 8.6E-13 99.7 7.5 136 7-158 2-151 (531)
163 PLN02507 glutathione reductase 98.7 4.8E-07 1E-11 91.7 15.3 49 108-160 255-303 (499)
164 TIGR03143 AhpF_homolog putativ 98.7 2.6E-07 5.6E-12 94.9 13.3 112 6-158 4-115 (555)
165 TIGR00562 proto_IX_ox protopor 98.7 3.3E-07 7.2E-12 91.9 13.9 67 7-73 3-82 (462)
166 PTZ00363 rab-GDP dissociation 98.7 2.8E-07 6E-12 91.5 13.0 39 4-42 2-40 (443)
167 PRK09897 hypothetical protein; 98.7 1.9E-07 4E-12 94.7 11.8 42 112-156 124-165 (534)
168 TIGR01811 sdhA_Bsu succinate d 98.7 3.1E-07 6.7E-12 95.0 13.7 31 9-39 1-31 (603)
169 TIGR02734 crtI_fam phytoene de 98.7 2.9E-07 6.3E-12 93.4 13.3 52 108-163 230-282 (502)
170 COG0029 NadB Aspartate oxidase 98.7 2.1E-07 4.6E-12 90.7 11.5 150 8-160 9-199 (518)
171 TIGR01421 gluta_reduc_1 glutat 98.6 4.5E-07 9.8E-12 90.7 13.8 50 108-160 218-268 (450)
172 PRK07233 hypothetical protein; 98.6 5.1E-07 1.1E-11 89.6 14.0 63 8-70 1-72 (434)
173 PRK12842 putative succinate de 98.6 5E-07 1.1E-11 93.2 14.1 42 1-42 4-45 (574)
174 PRK12416 protoporphyrinogen ox 98.6 6.1E-07 1.3E-11 90.1 14.0 47 112-163 239-285 (463)
175 PRK12844 3-ketosteroid-delta-1 98.6 9.7E-07 2.1E-11 90.6 15.3 37 6-42 6-42 (557)
176 PF00070 Pyr_redox: Pyridine n 98.6 9.5E-07 2E-11 66.3 11.1 80 8-138 1-80 (80)
177 PRK12835 3-ketosteroid-delta-1 98.6 8E-07 1.7E-11 91.7 14.3 38 5-42 10-47 (584)
178 TIGR02053 MerA mercuric reduct 98.6 1.1E-06 2.3E-11 88.4 14.9 33 7-39 1-33 (463)
179 KOG2415|consensus 98.6 3.1E-07 6.7E-12 87.3 9.6 151 5-164 75-263 (621)
180 PF06039 Mqo: Malate:quinone o 98.6 9.3E-07 2E-11 86.0 13.1 54 104-158 189-245 (488)
181 PRK13977 myosin-cross-reactive 98.6 2.1E-06 4.7E-11 86.7 16.1 37 6-42 22-62 (576)
182 TIGR02731 phytoene_desat phyto 98.6 1.4E-06 3E-11 87.3 14.7 64 8-71 1-74 (453)
183 PLN02612 phytoene desaturase 98.6 1.5E-06 3.3E-11 89.3 15.3 67 6-72 93-169 (567)
184 PTZ00306 NADH-dependent fumara 98.5 2E-06 4.4E-11 95.3 17.1 40 4-43 407-446 (1167)
185 PRK06327 dihydrolipoamide dehy 98.5 4.9E-07 1.1E-11 91.1 10.8 33 5-37 3-35 (475)
186 PLN02568 polyamine oxidase 98.5 1.8E-06 3.8E-11 88.1 14.6 42 110-155 253-294 (539)
187 PF13454 NAD_binding_9: FAD-NA 98.5 1.4E-06 3E-11 74.3 11.8 42 110-155 113-155 (156)
188 PF07992 Pyr_redox_2: Pyridine 98.5 8.2E-08 1.8E-12 84.9 4.2 116 8-158 1-123 (201)
189 PRK13748 putative mercuric red 98.5 4.7E-07 1E-11 93.2 10.4 35 5-39 97-131 (561)
190 PRK06134 putative FAD-binding 98.5 4.8E-07 1E-11 93.4 10.3 38 5-42 11-48 (581)
191 KOG0029|consensus 98.5 1.4E-06 3.1E-11 87.5 13.3 39 4-42 13-51 (501)
192 KOG0042|consensus 98.5 3.5E-07 7.6E-12 89.5 8.5 57 5-66 66-122 (680)
193 PF13450 NAD_binding_8: NAD(P) 98.5 1.7E-07 3.6E-12 68.2 4.7 32 11-42 1-32 (68)
194 TIGR02061 aprA adenosine phosp 98.5 2.8E-06 6E-11 87.7 15.1 146 8-158 1-192 (614)
195 TIGR02732 zeta_caro_desat caro 98.5 2.8E-06 6.1E-11 85.6 14.8 66 8-73 1-76 (474)
196 PRK05335 tRNA (uracil-5-)-meth 98.5 2.8E-07 6.1E-12 90.0 7.2 109 7-124 3-126 (436)
197 PRK12845 3-ketosteroid-delta-1 98.5 2.8E-06 6E-11 87.2 14.8 44 5-49 15-58 (564)
198 PRK14727 putative mercuric red 98.5 5.9E-07 1.3E-11 90.6 9.8 38 5-42 15-52 (479)
199 PRK13512 coenzyme A disulfide 98.5 1.7E-06 3.7E-11 86.3 12.2 114 8-158 3-118 (438)
200 PLN02487 zeta-carotene desatur 98.4 4.8E-06 1E-10 85.2 15.6 68 7-74 76-153 (569)
201 KOG1335|consensus 98.4 7.7E-07 1.7E-11 83.9 8.7 57 104-161 259-318 (506)
202 PRK09754 phenylpropionate diox 98.4 2.4E-06 5.2E-11 84.1 12.9 109 5-157 2-112 (396)
203 PTZ00058 glutathione reductase 98.4 6.1E-07 1.3E-11 91.8 8.6 35 5-39 47-81 (561)
204 PRK12843 putative FAD-binding 98.4 3.1E-06 6.6E-11 87.4 13.8 39 6-44 16-54 (578)
205 PRK07845 flavoprotein disulfid 98.4 1.1E-06 2.5E-11 88.3 10.2 133 8-158 3-152 (466)
206 PRK13800 putative oxidoreducta 98.4 5.4E-06 1.2E-10 89.7 16.0 36 5-40 12-47 (897)
207 TIGR02485 CobZ_N-term precorri 98.4 2.9E-06 6.2E-11 84.5 12.7 54 107-163 133-189 (432)
208 COG1249 Lpd Pyruvate/2-oxoglut 98.4 1.1E-06 2.4E-11 87.1 8.7 138 4-161 2-151 (454)
209 COG1053 SdhA Succinate dehydro 98.3 3.4E-06 7.4E-11 86.0 11.4 42 4-45 4-45 (562)
210 PRK12839 hypothetical protein; 98.3 5.9E-06 1.3E-10 85.0 12.8 39 4-42 6-44 (572)
211 PRK09564 coenzyme A disulfide 98.3 4.5E-06 9.8E-11 83.3 11.5 113 8-158 2-116 (444)
212 PRK04965 NADH:flavorubredoxin 98.3 7.1E-06 1.5E-10 80.2 12.5 100 7-159 142-241 (377)
213 TIGR03378 glycerol3P_GlpB glyc 98.3 1.6E-05 3.5E-10 77.9 14.5 50 107-158 273-324 (419)
214 TIGR02462 pyranose_ox pyranose 98.3 2E-05 4.3E-10 80.0 14.5 36 7-42 1-36 (544)
215 PRK09754 phenylpropionate diox 98.2 1.5E-05 3.2E-10 78.5 13.0 99 7-159 145-243 (396)
216 TIGR01372 soxA sarcosine oxida 98.2 2E-05 4.4E-10 86.1 15.2 37 6-42 163-199 (985)
217 TIGR01423 trypano_reduc trypan 98.2 6.7E-06 1.5E-10 83.0 10.5 34 5-38 2-36 (486)
218 TIGR01438 TGR thioredoxin and 98.2 6.4E-06 1.4E-10 83.2 10.3 33 6-38 2-34 (484)
219 COG2907 Predicted NAD/FAD-bind 98.2 2.6E-05 5.6E-10 73.0 12.5 65 6-71 8-86 (447)
220 PLN02546 glutathione reductase 98.2 9.5E-06 2.1E-10 83.1 10.7 32 6-37 79-110 (558)
221 PRK06912 acoL dihydrolipoamide 98.2 7.6E-06 1.6E-10 82.1 9.3 33 8-40 2-34 (458)
222 PRK07208 hypothetical protein; 98.2 2.5E-06 5.4E-11 86.1 5.7 39 4-42 2-40 (479)
223 PRK12814 putative NADPH-depend 98.1 4.6E-05 1E-09 79.7 14.6 36 6-41 193-228 (652)
224 PRK06292 dihydrolipoamide dehy 98.1 3E-06 6.5E-11 85.1 5.0 35 4-38 1-35 (460)
225 KOG2844|consensus 98.1 2.6E-05 5.7E-10 78.4 11.3 56 104-164 194-250 (856)
226 TIGR03452 mycothione_red mycot 98.1 1.6E-05 3.4E-10 79.7 9.9 33 5-39 1-33 (452)
227 TIGR00137 gid_trmFO tRNA:m(5)U 98.1 5.1E-06 1.1E-10 81.6 6.2 66 7-72 1-68 (433)
228 COG1249 Lpd Pyruvate/2-oxoglut 98.1 4.2E-05 9.1E-10 76.1 12.7 104 7-162 174-277 (454)
229 PRK05976 dihydrolipoamide dehy 98.1 5.3E-05 1.2E-09 76.3 13.5 102 7-160 181-284 (472)
230 PRK07846 mycothione reductase; 98.1 4E-05 8.7E-10 76.8 12.0 99 7-160 167-265 (451)
231 PRK04965 NADH:flavorubredoxin 98.1 3.4E-05 7.5E-10 75.4 11.3 108 7-158 3-112 (377)
232 PTZ00318 NADH dehydrogenase-li 98.1 1.7E-05 3.8E-10 78.8 9.3 110 4-157 8-125 (424)
233 KOG2404|consensus 98.0 5.1E-05 1.1E-09 70.4 10.9 37 8-44 11-47 (477)
234 PF13434 K_oxygenase: L-lysine 98.0 2.2E-06 4.7E-11 82.5 2.0 148 6-164 2-166 (341)
235 KOG2852|consensus 98.0 1.7E-05 3.6E-10 72.4 7.4 39 6-44 10-54 (380)
236 TIGR03169 Nterm_to_SelD pyridi 98.0 2.5E-05 5.5E-10 75.8 9.3 104 8-157 1-107 (364)
237 COG2509 Uncharacterized FAD-de 98.0 5.1E-05 1.1E-09 73.6 10.6 47 107-157 183-230 (486)
238 TIGR02733 desat_CrtD C-3',4' d 98.0 7.9E-06 1.7E-10 82.8 5.3 36 7-42 2-37 (492)
239 PRK06115 dihydrolipoamide dehy 98.0 0.00011 2.3E-09 74.0 13.3 104 6-160 174-279 (466)
240 PRK07846 mycothione reductase; 98.0 2.2E-05 4.7E-10 78.7 8.2 32 6-39 1-32 (451)
241 PLN02576 protoporphyrinogen ox 98.0 8.8E-06 1.9E-10 82.5 5.4 38 5-42 11-49 (496)
242 PRK06912 acoL dihydrolipoamide 98.0 0.00012 2.5E-09 73.6 13.4 101 7-160 171-271 (458)
243 PRK07845 flavoprotein disulfid 98.0 0.00011 2.3E-09 74.0 13.0 100 7-160 178-277 (466)
244 COG0445 GidA Flavin-dependent 98.0 6.2E-06 1.3E-10 81.4 3.8 145 4-157 2-158 (621)
245 PRK06327 dihydrolipoamide dehy 97.9 0.00012 2.6E-09 73.9 12.8 103 7-160 184-287 (475)
246 PRK14989 nitrite reductase sub 97.9 5.1E-05 1.1E-09 81.3 10.6 107 7-158 4-114 (847)
247 TIGR00031 UDP-GALP_mutase UDP- 97.9 1.2E-05 2.7E-10 78.1 5.3 36 7-42 2-37 (377)
248 TIGR03452 mycothione_red mycot 97.9 9.9E-05 2.1E-09 74.0 11.9 98 7-159 170-267 (452)
249 PLN02268 probable polyamine ox 97.9 1.3E-05 2.9E-10 79.8 5.3 41 111-155 210-250 (435)
250 COG3349 Uncharacterized conser 97.9 1.3E-05 2.8E-10 79.1 4.9 63 8-70 2-74 (485)
251 TIGR03315 Se_ygfK putative sel 97.9 1.5E-05 3.2E-10 85.9 5.4 36 6-41 537-572 (1012)
252 PRK06292 dihydrolipoamide dehy 97.9 0.00022 4.7E-09 71.6 13.5 101 7-160 170-271 (460)
253 PRK06467 dihydrolipoamide dehy 97.9 0.00017 3.7E-09 72.6 12.6 101 7-160 175-277 (471)
254 TIGR02374 nitri_red_nirB nitri 97.9 0.00013 2.8E-09 78.0 12.1 100 7-159 141-240 (785)
255 KOG0685|consensus 97.8 6E-05 1.3E-09 73.4 8.2 37 6-42 21-58 (498)
256 TIGR02374 nitri_red_nirB nitri 97.8 8.1E-05 1.7E-09 79.6 10.1 106 9-158 1-109 (785)
257 KOG2665|consensus 97.8 2.5E-05 5.5E-10 72.1 5.3 38 5-42 47-86 (453)
258 PRK12779 putative bifunctional 97.8 2E-05 4.4E-10 85.2 5.3 37 6-42 306-342 (944)
259 PF00732 GMC_oxred_N: GMC oxid 97.8 1.8E-05 3.9E-10 74.5 4.2 35 7-41 1-36 (296)
260 PRK12831 putative oxidoreducta 97.8 2.5E-05 5.4E-10 78.5 5.4 36 6-41 140-175 (464)
261 PTZ00052 thioredoxin reductase 97.8 2E-05 4.3E-10 80.0 4.7 33 6-38 5-37 (499)
262 COG4529 Uncharacterized protei 97.8 6.6E-05 1.4E-09 73.6 7.7 36 7-42 2-40 (474)
263 PLN02852 ferredoxin-NADP+ redu 97.8 3.1E-05 6.8E-10 77.8 5.4 37 6-42 26-64 (491)
264 PRK14989 nitrite reductase sub 97.8 0.00023 5.1E-09 76.4 12.3 100 7-159 146-247 (847)
265 TIGR03385 CoA_CoA_reduc CoA-di 97.8 0.00034 7.4E-09 69.5 12.5 98 7-159 138-235 (427)
266 PLN02676 polyamine oxidase 97.7 4E-05 8.7E-10 77.4 5.7 43 111-157 244-286 (487)
267 PRK09564 coenzyme A disulfide 97.7 0.00042 9.1E-09 69.2 12.6 98 7-158 150-247 (444)
268 TIGR01316 gltA glutamate synth 97.7 4.5E-05 9.7E-10 76.4 5.4 37 5-41 132-168 (449)
269 PRK02106 choline dehydrogenase 97.7 4.2E-05 9.1E-10 78.8 5.4 38 1-39 1-39 (560)
270 PTZ00052 thioredoxin reductase 97.7 0.00044 9.5E-09 70.2 12.6 99 7-160 183-281 (499)
271 PRK14694 putative mercuric red 97.7 0.00053 1.1E-08 69.1 12.9 98 7-160 179-276 (468)
272 PRK12769 putative oxidoreducta 97.7 4.8E-05 1E-09 79.8 5.5 37 6-42 327-363 (654)
273 PRK09853 putative selenate red 97.7 4.6E-05 1E-09 82.0 5.4 36 6-41 539-574 (1019)
274 COG1148 HdrA Heterodisulfide r 97.7 4.7E-05 1E-09 74.2 4.8 36 7-42 125-160 (622)
275 TIGR01423 trypano_reduc trypan 97.7 0.00047 1E-08 69.7 12.2 100 7-160 188-291 (486)
276 PF01593 Amino_oxidase: Flavin 97.7 8.4E-05 1.8E-09 72.8 6.7 48 109-160 221-268 (450)
277 PTZ00188 adrenodoxin reductase 97.7 6.3E-05 1.4E-09 74.9 5.7 38 5-42 38-76 (506)
278 PRK05329 anaerobic glycerol-3- 97.7 5.1E-05 1.1E-09 75.0 5.1 34 6-39 2-35 (422)
279 PRK14727 putative mercuric red 97.7 0.00058 1.2E-08 69.0 12.7 98 7-160 189-286 (479)
280 COG0562 Glf UDP-galactopyranos 97.7 6.4E-05 1.4E-09 69.8 5.2 37 7-43 2-38 (374)
281 PRK06567 putative bifunctional 97.7 4.7E-05 1E-09 81.1 4.9 34 6-39 383-416 (1028)
282 PRK12775 putative trifunctiona 97.7 5.2E-05 1.1E-09 82.8 5.3 37 6-42 430-466 (1006)
283 PRK13512 coenzyme A disulfide 97.6 0.00051 1.1E-08 68.6 12.0 95 7-159 149-243 (438)
284 PRK12810 gltD glutamate syntha 97.6 7.3E-05 1.6E-09 75.3 5.8 37 6-42 143-179 (471)
285 TIGR01318 gltD_gamma_fam gluta 97.6 0.00012 2.6E-09 73.7 7.2 36 6-41 141-176 (467)
286 PRK12778 putative bifunctional 97.6 6.4E-05 1.4E-09 80.1 5.4 36 6-41 431-466 (752)
287 COG0446 HcaD Uncharacterized N 97.6 0.00055 1.2E-08 67.1 11.6 99 7-158 137-238 (415)
288 COG1252 Ndh NADH dehydrogenase 97.6 0.00044 9.6E-09 67.4 10.5 107 6-157 3-111 (405)
289 PTZ00058 glutathione reductase 97.6 0.00078 1.7E-08 69.2 12.8 101 6-160 237-339 (561)
290 PRK13748 putative mercuric red 97.6 0.0007 1.5E-08 69.8 12.4 98 7-160 271-368 (561)
291 TIGR01438 TGR thioredoxin and 97.6 0.00077 1.7E-08 68.2 12.4 101 7-160 181-282 (484)
292 PLN02529 lysine-specific histo 97.6 8.2E-05 1.8E-09 78.1 5.5 37 5-41 159-195 (738)
293 PRK11749 dihydropyrimidine deh 97.6 9E-05 2E-09 74.4 5.3 36 6-41 140-175 (457)
294 PRK12809 putative oxidoreducta 97.5 0.00017 3.6E-09 75.5 7.1 37 6-42 310-346 (639)
295 COG3573 Predicted oxidoreducta 97.5 0.00011 2.4E-09 68.5 5.0 38 4-41 3-40 (552)
296 PTZ00153 lipoamide dehydrogena 97.5 0.00093 2E-08 69.7 12.2 104 7-160 313-430 (659)
297 COG3075 GlpB Anaerobic glycero 97.5 0.00011 2.3E-09 68.5 4.7 34 6-39 2-35 (421)
298 PLN02328 lysine-specific histo 97.5 0.00011 2.5E-09 77.5 5.4 38 5-42 237-274 (808)
299 TIGR03197 MnmC_Cterm tRNA U-34 97.5 0.0006 1.3E-08 66.7 9.9 47 107-158 145-191 (381)
300 PTZ00153 lipoamide dehydrogena 97.5 0.00012 2.5E-09 76.4 4.9 33 6-38 116-148 (659)
301 KOG4254|consensus 97.4 0.00047 1E-08 66.8 7.3 55 105-163 272-327 (561)
302 KOG2311|consensus 97.4 0.00019 4.1E-09 69.9 4.6 35 5-39 27-61 (679)
303 PTZ00318 NADH dehydrogenase-li 97.4 0.0021 4.5E-08 63.9 12.3 92 8-157 175-280 (424)
304 COG3634 AhpF Alkyl hydroperoxi 97.4 0.00028 6E-09 66.2 5.5 110 6-156 211-324 (520)
305 TIGR01292 TRX_reduct thioredox 97.4 0.0019 4.2E-08 60.4 11.4 98 6-159 141-240 (300)
306 PLN02546 glutathione reductase 97.4 0.0022 4.8E-08 65.9 12.3 101 6-160 252-353 (558)
307 TIGR03140 AhpF alkyl hydropero 97.3 0.0023 4.9E-08 65.3 11.8 97 7-159 353-452 (515)
308 COG2303 BetA Choline dehydroge 97.3 0.00023 4.9E-09 72.9 4.5 36 4-39 5-40 (542)
309 PRK12771 putative glutamate sy 97.3 0.0003 6.5E-09 72.6 5.4 37 6-42 137-173 (564)
310 PRK12770 putative glutamate sy 97.3 0.00033 7.2E-09 67.8 5.4 36 6-41 18-53 (352)
311 TIGR03377 glycerol3P_GlpA glyc 97.3 0.0014 2.9E-08 67.0 10.0 53 105-158 136-191 (516)
312 COG0493 GltD NADPH-dependent g 97.3 0.00027 5.8E-09 70.4 4.4 36 7-42 124-159 (457)
313 KOG2960|consensus 97.3 0.00067 1.4E-08 59.5 6.2 36 7-42 77-114 (328)
314 TIGR01317 GOGAT_sm_gam glutama 97.3 0.00036 7.7E-09 70.6 5.2 35 7-41 144-178 (485)
315 PRK12770 putative glutamate sy 97.2 0.0047 1E-07 59.8 12.1 33 7-39 173-206 (352)
316 PLN03000 amine oxidase 97.2 0.00048 1E-08 73.1 5.4 37 6-42 184-220 (881)
317 TIGR01810 betA choline dehydro 97.1 0.00037 8E-09 71.4 4.0 33 8-40 1-34 (532)
318 PF06100 Strep_67kDa_ant: Stre 97.1 0.017 3.6E-07 57.4 15.2 36 7-42 3-42 (500)
319 PRK15317 alkyl hydroperoxide r 97.1 0.0059 1.3E-07 62.3 12.7 97 7-159 352-451 (517)
320 PLN02785 Protein HOTHEAD 97.1 0.00058 1.3E-08 70.5 4.9 34 6-40 55-88 (587)
321 PRK13984 putative oxidoreducta 97.1 0.00066 1.4E-08 70.6 5.3 37 6-42 283-319 (604)
322 PF13434 K_oxygenase: L-lysine 97.1 0.0022 4.9E-08 61.7 8.5 143 6-155 190-339 (341)
323 PLN02976 amine oxidase 97.0 0.00076 1.6E-08 74.4 5.2 37 6-42 693-729 (1713)
324 PRK10262 thioredoxin reductase 97.0 0.0096 2.1E-07 56.8 12.3 101 7-160 147-251 (321)
325 KOG1276|consensus 97.0 0.0007 1.5E-08 65.3 4.3 70 6-75 11-95 (491)
326 TIGR02352 thiamin_ThiO glycine 97.0 0.0026 5.5E-08 60.7 8.2 49 105-158 145-194 (337)
327 COG1252 Ndh NADH dehydrogenase 96.9 0.0051 1.1E-07 60.1 9.4 50 107-163 219-269 (405)
328 KOG1800|consensus 96.9 0.0014 3E-08 62.4 4.8 38 5-42 19-58 (468)
329 PRK11749 dihydropyrimidine deh 96.8 0.011 2.5E-07 59.3 11.1 34 6-39 273-307 (457)
330 COG3486 IucD Lysine/ornithine 96.8 0.0027 5.8E-08 61.1 5.9 142 4-163 3-163 (436)
331 COG1206 Gid NAD(FAD)-utilizing 96.6 0.0021 4.6E-08 60.0 3.8 36 6-41 3-38 (439)
332 TIGR03169 Nterm_to_SelD pyridi 96.5 0.03 6.4E-07 54.3 11.8 41 110-158 204-244 (364)
333 KOG0399|consensus 96.5 0.0025 5.3E-08 67.9 4.2 36 7-42 1786-1821(2142)
334 TIGR01316 gltA glutamate synth 96.5 0.044 9.5E-07 54.9 13.1 33 7-39 273-305 (449)
335 KOG0405|consensus 96.5 0.023 5E-07 53.7 10.1 135 4-160 18-168 (478)
336 KOG0404|consensus 96.5 0.0062 1.3E-07 54.0 6.0 111 7-157 9-124 (322)
337 KOG1336|consensus 96.4 0.025 5.3E-07 55.6 9.9 101 7-160 214-316 (478)
338 TIGR03143 AhpF_homolog putativ 96.4 0.039 8.4E-07 56.9 12.1 33 7-39 144-176 (555)
339 PRK12831 putative oxidoreducta 96.3 0.035 7.7E-07 55.8 11.2 33 7-39 282-314 (464)
340 KOG1238|consensus 96.2 0.0044 9.6E-08 63.0 4.2 37 5-41 56-93 (623)
341 COG1251 NirB NAD(P)H-nitrite r 96.1 0.01 2.2E-07 61.1 6.0 99 7-158 146-244 (793)
342 PF01210 NAD_Gly3P_dh_N: NAD-d 96.1 0.0077 1.7E-07 51.2 4.4 32 8-39 1-32 (157)
343 PRK05675 sdhA succinate dehydr 96.0 0.11 2.3E-06 53.8 13.2 49 109-159 138-191 (570)
344 PF03721 UDPG_MGDP_dh_N: UDP-g 96.0 0.0058 1.3E-07 53.5 3.1 33 8-40 2-34 (185)
345 PF02737 3HCDH_N: 3-hydroxyacy 95.9 0.0089 1.9E-07 52.1 4.2 32 8-39 1-32 (180)
346 PRK06249 2-dehydropantoate 2-r 95.9 0.012 2.6E-07 56.0 5.2 36 4-39 3-38 (313)
347 KOG4716|consensus 95.8 0.009 1.9E-07 56.2 3.8 34 5-38 18-51 (503)
348 TIGR03467 HpnE squalene-associ 95.8 0.12 2.6E-06 50.8 11.8 45 110-157 210-254 (419)
349 PRK14106 murD UDP-N-acetylmura 95.7 0.015 3.3E-07 58.2 5.4 36 4-39 3-38 (450)
350 COG0569 TrkA K+ transport syst 95.7 0.013 2.9E-07 53.0 4.4 60 8-69 2-64 (225)
351 PRK12810 gltD glutamate syntha 95.7 0.054 1.2E-06 54.6 9.2 33 7-39 282-315 (471)
352 PRK12778 putative bifunctional 95.7 0.096 2.1E-06 56.1 11.5 33 7-39 571-604 (752)
353 PRK01438 murD UDP-N-acetylmura 95.6 0.016 3.5E-07 58.5 5.1 34 6-39 16-49 (480)
354 PRK07819 3-hydroxybutyryl-CoA 95.6 0.016 3.5E-07 54.4 4.8 34 8-41 7-40 (286)
355 PRK02705 murD UDP-N-acetylmura 95.5 0.016 3.4E-07 58.2 4.7 34 8-41 2-35 (459)
356 PF00996 GDI: GDP dissociation 95.5 0.015 3.3E-07 57.6 4.3 38 5-42 3-40 (438)
357 KOG3923|consensus 95.5 0.016 3.5E-07 53.6 4.1 38 6-43 3-47 (342)
358 PF02558 ApbA: Ketopantoate re 95.5 0.022 4.7E-07 47.8 4.7 31 9-39 1-31 (151)
359 TIGR01421 gluta_reduc_1 glutat 95.4 0.028 6.2E-07 56.3 6.0 35 7-41 167-201 (450)
360 PRK07251 pyridine nucleotide-d 95.3 0.022 4.8E-07 56.8 4.9 99 7-160 158-256 (438)
361 PRK06129 3-hydroxyacyl-CoA deh 95.3 0.021 4.4E-07 54.3 4.2 33 8-40 4-36 (308)
362 PRK08293 3-hydroxybutyryl-CoA 95.2 0.026 5.6E-07 53.0 4.8 33 7-39 4-36 (287)
363 PRK07530 3-hydroxybutyryl-CoA 95.2 0.028 6.1E-07 52.9 4.8 34 6-39 4-37 (292)
364 PRK06719 precorrin-2 dehydroge 95.1 0.042 9.1E-07 46.8 5.4 32 5-36 12-43 (157)
365 PRK12779 putative bifunctional 95.1 0.12 2.6E-06 56.5 10.1 33 7-39 448-480 (944)
366 PLN02172 flavin-containing mon 95.1 0.055 1.2E-06 54.4 7.0 34 6-39 204-237 (461)
367 TIGR01350 lipoamide_DH dihydro 95.1 0.027 5.8E-07 56.5 4.8 35 7-41 171-205 (461)
368 PRK06130 3-hydroxybutyryl-CoA 95.0 0.033 7.1E-07 52.9 4.9 32 8-39 6-37 (311)
369 PLN02545 3-hydroxybutyryl-CoA 95.0 0.032 7E-07 52.5 4.8 37 1-39 1-37 (295)
370 PRK07066 3-hydroxybutyryl-CoA 95.0 0.037 8.1E-07 52.7 5.1 34 7-40 8-41 (321)
371 TIGR02053 MerA mercuric reduct 94.9 0.034 7.3E-07 55.9 4.9 103 7-160 167-269 (463)
372 PRK05808 3-hydroxybutyryl-CoA 94.9 0.034 7.4E-07 52.0 4.6 33 8-40 5-37 (282)
373 PRK11064 wecC UDP-N-acetyl-D-m 94.9 0.031 6.8E-07 55.4 4.5 34 7-40 4-37 (415)
374 PRK06416 dihydrolipoamide dehy 94.9 0.035 7.5E-07 55.8 4.9 35 7-41 173-207 (462)
375 PRK06035 3-hydroxyacyl-CoA deh 94.9 0.036 7.8E-07 52.2 4.6 33 7-39 4-36 (291)
376 KOG3851|consensus 94.8 0.016 3.5E-07 54.1 2.1 35 5-39 38-74 (446)
377 PRK05708 2-dehydropantoate 2-r 94.8 0.041 8.9E-07 52.2 4.8 33 7-39 3-35 (305)
378 KOG1336|consensus 94.7 0.13 2.8E-06 50.7 8.1 104 6-155 74-179 (478)
379 PRK05249 soluble pyridine nucl 94.7 0.073 1.6E-06 53.4 6.8 35 7-41 176-210 (461)
380 PTZ00082 L-lactate dehydrogena 94.7 0.055 1.2E-06 51.7 5.6 41 1-41 1-42 (321)
381 TIGR03862 flavo_PP4765 unchara 94.7 0.16 3.4E-06 49.6 8.7 45 107-157 96-141 (376)
382 PF13241 NAD_binding_7: Putati 94.6 0.029 6.3E-07 44.0 2.9 35 4-38 5-39 (103)
383 COG1004 Ugd Predicted UDP-gluc 94.6 0.039 8.5E-07 53.2 4.2 33 8-40 2-34 (414)
384 PRK09260 3-hydroxybutyryl-CoA 94.6 0.039 8.5E-07 51.8 4.2 33 8-40 3-35 (288)
385 TIGR01318 gltD_gamma_fam gluta 94.6 0.28 6E-06 49.5 10.5 34 7-40 283-317 (467)
386 PRK06370 mercuric reductase; V 94.6 0.046 9.9E-07 55.0 4.8 103 7-160 172-274 (463)
387 PRK00066 ldh L-lactate dehydro 94.6 0.065 1.4E-06 51.0 5.6 40 1-40 1-42 (315)
388 PRK07818 dihydrolipoamide dehy 94.5 0.047 1E-06 54.9 4.8 35 7-41 173-207 (466)
389 PRK12921 2-dehydropantoate 2-r 94.5 0.048 1E-06 51.4 4.6 30 8-37 2-31 (305)
390 PRK08229 2-dehydropantoate 2-r 94.5 0.052 1.1E-06 52.2 4.8 31 8-38 4-34 (341)
391 PRK06522 2-dehydropantoate 2-r 94.4 0.05 1.1E-06 51.3 4.5 32 8-39 2-33 (304)
392 TIGR01470 cysG_Nterm siroheme 94.4 0.075 1.6E-06 47.3 5.2 34 5-38 8-41 (205)
393 PRK07502 cyclohexadienyl dehyd 94.4 0.054 1.2E-06 51.4 4.5 39 1-39 1-41 (307)
394 PF13478 XdhC_C: XdhC Rossmann 94.3 0.047 1E-06 45.2 3.6 32 9-40 1-32 (136)
395 PRK12769 putative oxidoreducta 94.3 0.67 1.4E-05 48.8 13.1 33 7-39 469-502 (654)
396 TIGR02354 thiF_fam2 thiamine b 94.3 0.067 1.5E-06 47.4 4.7 35 5-39 20-55 (200)
397 PRK15116 sulfur acceptor prote 94.2 0.072 1.6E-06 49.4 4.9 37 5-41 29-66 (268)
398 TIGR03315 Se_ygfK putative sel 94.2 0.52 1.1E-05 51.6 12.1 33 7-39 667-701 (1012)
399 PRK14618 NAD(P)H-dependent gly 94.2 0.067 1.5E-06 51.2 4.8 32 8-39 6-37 (328)
400 PRK06718 precorrin-2 dehydroge 94.1 0.087 1.9E-06 46.8 5.1 34 4-37 8-41 (202)
401 PF00899 ThiF: ThiF family; I 94.1 0.054 1.2E-06 44.7 3.6 36 6-41 2-38 (135)
402 PF01262 AlaDh_PNT_C: Alanine 94.1 0.07 1.5E-06 45.9 4.3 35 5-39 19-53 (168)
403 PRK00094 gpsA NAD(P)H-dependen 94.0 0.068 1.5E-06 50.9 4.5 32 8-39 3-34 (325)
404 PRK08268 3-hydroxy-acyl-CoA de 93.9 0.08 1.7E-06 53.8 5.1 35 7-41 8-42 (507)
405 PRK09853 putative selenate red 93.9 0.51 1.1E-05 51.6 11.3 33 7-39 669-703 (1019)
406 PF02254 TrkA_N: TrkA-N domain 93.9 0.083 1.8E-06 42.0 4.2 32 9-40 1-32 (116)
407 cd05292 LDH_2 A subgroup of L- 93.9 0.08 1.7E-06 50.3 4.7 33 8-40 2-36 (308)
408 COG0446 HcaD Uncharacterized N 93.8 0.31 6.8E-06 47.5 9.0 106 9-159 1-108 (415)
409 PRK06116 glutathione reductase 93.8 0.082 1.8E-06 52.9 4.9 35 7-41 168-202 (450)
410 TIGR00518 alaDH alanine dehydr 93.8 0.085 1.8E-06 51.5 4.8 35 5-39 166-200 (370)
411 TIGR01424 gluta_reduc_2 glutat 93.7 0.085 1.9E-06 52.8 4.8 35 7-41 167-201 (446)
412 PLN02507 glutathione reductase 93.7 0.084 1.8E-06 53.7 4.8 35 7-41 204-238 (499)
413 cd00401 AdoHcyase S-adenosyl-L 93.7 0.082 1.8E-06 52.1 4.5 34 6-39 202-235 (413)
414 PRK08010 pyridine nucleotide-d 93.6 0.093 2E-06 52.4 4.9 35 7-41 159-193 (441)
415 PRK04148 hypothetical protein; 93.6 0.073 1.6E-06 43.8 3.3 33 7-40 18-50 (134)
416 PRK12475 thiamine/molybdopteri 93.6 0.1 2.3E-06 50.1 4.9 37 5-41 23-60 (338)
417 PRK09424 pntA NAD(P) transhydr 93.4 0.085 1.8E-06 53.4 4.2 35 6-40 165-199 (509)
418 PRK14620 NAD(P)H-dependent gly 93.4 0.093 2E-06 50.2 4.3 32 8-39 2-33 (326)
419 TIGR03026 NDP-sugDHase nucleot 93.3 0.088 1.9E-06 52.1 4.1 33 8-40 2-34 (411)
420 TIGR01816 sdhA_forward succina 93.3 0.87 1.9E-05 47.1 11.5 50 108-159 130-183 (565)
421 COG0492 TrxB Thioredoxin reduc 93.3 1.7 3.6E-05 41.2 12.4 96 7-159 144-240 (305)
422 TIGR01763 MalateDH_bact malate 93.2 0.13 2.9E-06 48.7 5.0 32 8-39 3-35 (305)
423 PF00056 Ldh_1_N: lactate/mala 93.1 0.16 3.5E-06 42.3 4.8 32 8-39 2-36 (141)
424 PRK06223 malate dehydrogenase; 93.1 0.14 3E-06 48.5 5.0 33 8-40 4-37 (307)
425 TIGR02356 adenyl_thiF thiazole 93.1 0.15 3.3E-06 45.2 4.9 37 4-40 19-56 (202)
426 PF03446 NAD_binding_2: NAD bi 93.1 0.11 2.4E-06 44.3 3.9 32 8-39 3-34 (163)
427 cd01080 NAD_bind_m-THF_DH_Cycl 93.1 0.17 3.8E-06 43.5 5.0 35 4-38 42-77 (168)
428 KOG1346|consensus 93.1 0.22 4.7E-06 48.4 6.0 96 8-154 349-446 (659)
429 PF01488 Shikimate_DH: Shikima 93.0 0.19 4.2E-06 41.4 5.1 35 5-39 11-46 (135)
430 PLN02353 probable UDP-glucose 93.0 0.12 2.6E-06 52.0 4.5 33 8-40 3-37 (473)
431 PRK12775 putative trifunctiona 92.9 1.2 2.6E-05 49.3 12.4 33 7-39 572-605 (1006)
432 PF00743 FMO-like: Flavin-bind 92.8 0.28 6.2E-06 50.2 7.0 35 6-40 183-217 (531)
433 TIGR02964 xanthine_xdhC xanthi 92.8 0.17 3.7E-06 46.4 4.8 35 6-40 100-134 (246)
434 PRK05690 molybdopterin biosynt 92.7 0.18 3.9E-06 46.2 4.9 36 5-40 31-67 (245)
435 PRK07531 bifunctional 3-hydrox 92.7 0.15 3.3E-06 51.7 4.8 33 8-40 6-38 (495)
436 TIGR02355 moeB molybdopterin s 92.7 0.18 4E-06 46.0 4.9 37 5-41 23-60 (240)
437 PRK07688 thiamine/molybdopteri 92.7 0.17 3.7E-06 48.7 4.8 35 5-39 23-58 (339)
438 PRK07417 arogenate dehydrogena 92.7 0.13 2.8E-06 48.1 4.0 32 8-39 2-33 (279)
439 PRK08644 thiamine biosynthesis 92.6 0.18 3.9E-06 45.1 4.7 35 5-39 27-62 (212)
440 PRK07326 short chain dehydroge 92.5 0.2 4.3E-06 45.0 5.0 39 1-39 1-40 (237)
441 PRK04308 murD UDP-N-acetylmura 92.5 0.21 4.6E-06 49.9 5.6 37 4-40 3-39 (445)
442 PRK14619 NAD(P)H-dependent gly 92.5 0.21 4.5E-06 47.4 5.2 35 6-40 4-38 (308)
443 COG1748 LYS9 Saccharopine dehy 92.5 0.18 3.8E-06 49.2 4.7 33 8-40 3-36 (389)
444 KOG2304|consensus 92.4 0.14 3E-06 45.6 3.6 36 6-41 11-46 (298)
445 cd00757 ThiF_MoeB_HesA_family 92.4 0.2 4.4E-06 45.3 4.7 35 5-39 20-55 (228)
446 COG1063 Tdh Threonine dehydrog 92.2 0.17 3.8E-06 48.9 4.4 32 8-39 171-203 (350)
447 TIGR00936 ahcY adenosylhomocys 92.2 0.22 4.7E-06 49.0 4.9 35 6-40 195-229 (406)
448 PRK07774 short chain dehydroge 92.1 0.26 5.7E-06 44.6 5.2 39 1-39 1-40 (250)
449 cd01487 E1_ThiF_like E1_ThiF_l 92.0 0.25 5.4E-06 42.8 4.7 32 8-39 1-33 (174)
450 KOG2495|consensus 92.0 0.068 1.5E-06 52.0 1.2 84 8-98 220-319 (491)
451 TIGR02279 PaaC-3OHAcCoADH 3-hy 92.0 0.2 4.3E-06 50.9 4.6 35 7-41 6-40 (503)
452 PRK02472 murD UDP-N-acetylmura 91.9 0.24 5.2E-06 49.5 5.2 35 5-39 4-38 (447)
453 COG3486 IucD Lysine/ornithine 91.9 0.37 8.1E-06 46.7 6.0 54 109-163 290-346 (436)
454 cd01483 E1_enzyme_family Super 91.8 0.29 6.3E-06 40.6 4.8 34 8-41 1-35 (143)
455 PRK08328 hypothetical protein; 91.8 0.27 5.9E-06 44.6 4.9 35 5-39 26-61 (231)
456 PRK15057 UDP-glucose 6-dehydro 91.7 0.18 4E-06 49.4 3.9 33 8-41 2-34 (388)
457 PF00670 AdoHcyase_NAD: S-aden 91.7 0.23 5.1E-06 42.2 4.0 35 6-40 23-57 (162)
458 cd05291 HicDH_like L-2-hydroxy 91.7 0.24 5.2E-06 47.0 4.6 34 8-41 2-37 (306)
459 PRK08703 short chain dehydroge 91.7 0.29 6.4E-06 44.1 5.0 39 1-39 1-40 (239)
460 cd01075 NAD_bind_Leu_Phe_Val_D 91.6 0.35 7.5E-06 42.9 5.2 35 4-38 26-60 (200)
461 COG5044 MRS6 RAB proteins gera 91.6 0.28 6.1E-06 46.9 4.8 38 5-42 5-42 (434)
462 cd01339 LDH-like_MDH L-lactate 91.6 0.23 5E-06 46.9 4.3 31 9-39 1-32 (300)
463 cd05293 LDH_1 A subgroup of L- 91.5 0.3 6.6E-06 46.4 5.1 34 6-39 3-38 (312)
464 PRK07067 sorbitol dehydrogenas 91.5 0.33 7.1E-06 44.3 5.1 39 1-39 1-40 (257)
465 PRK08306 dipicolinate synthase 91.4 0.3 6.5E-06 46.1 4.9 35 5-39 151-185 (296)
466 PRK05476 S-adenosyl-L-homocyst 91.4 0.3 6.6E-06 48.3 5.1 36 6-41 212-247 (425)
467 cd00755 YgdL_like Family of ac 91.4 0.33 7.2E-06 44.0 4.9 36 5-40 10-46 (231)
468 cd01492 Aos1_SUMO Ubiquitin ac 91.3 0.32 6.8E-06 43.0 4.6 35 5-39 20-55 (197)
469 TIGR01915 npdG NADPH-dependent 91.3 0.29 6.4E-06 43.9 4.5 32 8-39 2-34 (219)
470 PRK08264 short chain dehydroge 91.2 0.38 8.2E-06 43.2 5.3 40 1-40 1-42 (238)
471 PRK15461 NADH-dependent gamma- 91.2 0.28 6.2E-06 46.2 4.5 32 8-39 3-34 (296)
472 PRK00683 murD UDP-N-acetylmura 91.1 0.28 6.1E-06 48.6 4.6 34 6-39 3-36 (418)
473 PRK08265 short chain dehydroge 91.1 0.38 8.2E-06 44.1 5.2 40 1-40 1-41 (261)
474 TIGR00561 pntA NAD(P) transhyd 91.1 0.29 6.3E-06 49.5 4.6 34 6-39 164-197 (511)
475 PRK10669 putative cation:proto 91.0 0.27 5.9E-06 50.7 4.5 34 7-40 418-451 (558)
476 PRK11730 fadB multifunctional 91.0 0.23 5.1E-06 52.7 4.1 35 7-41 314-348 (715)
477 PRK12809 putative oxidoreducta 90.9 2.2 4.7E-05 44.9 11.1 34 7-40 452-486 (639)
478 TIGR03736 PRTRC_ThiF PRTRC sys 90.8 0.39 8.4E-06 43.9 4.8 36 5-40 10-56 (244)
479 cd01485 E1-1_like Ubiquitin ac 90.8 0.37 8.1E-06 42.6 4.6 35 5-39 18-53 (198)
480 cd05311 NAD_bind_2_malic_enz N 90.8 0.41 8.8E-06 43.3 4.9 36 5-40 24-62 (226)
481 COG1893 ApbA Ketopantoate redu 90.7 0.29 6.3E-06 46.4 4.1 32 8-39 2-33 (307)
482 TIGR02437 FadB fatty oxidation 90.7 0.26 5.6E-06 52.3 4.1 34 8-41 315-348 (714)
483 TIGR01505 tartro_sem_red 2-hyd 90.6 0.29 6.4E-06 45.9 4.0 32 8-39 1-32 (291)
484 PRK12549 shikimate 5-dehydroge 90.6 0.41 8.8E-06 44.9 4.9 34 6-39 127-161 (284)
485 PRK09496 trkA potassium transp 90.6 0.3 6.5E-06 48.8 4.3 33 8-40 2-34 (453)
486 PRK03369 murD UDP-N-acetylmura 90.6 0.31 6.7E-06 49.4 4.4 32 7-38 13-44 (488)
487 cd01078 NAD_bind_H4MPT_DH NADP 90.6 0.47 1E-05 41.6 5.1 35 5-39 27-62 (194)
488 PF10727 Rossmann-like: Rossma 90.6 0.2 4.2E-06 41.0 2.4 33 6-38 10-42 (127)
489 TIGR02853 spore_dpaA dipicolin 90.6 0.39 8.5E-06 45.1 4.8 34 6-39 151-184 (287)
490 PRK06194 hypothetical protein; 90.5 0.44 9.5E-06 44.2 5.1 39 1-39 1-40 (287)
491 PTZ00117 malate dehydrogenase; 90.5 0.43 9.3E-06 45.6 5.1 36 6-41 5-41 (319)
492 PRK08223 hypothetical protein; 90.5 0.39 8.4E-06 44.9 4.6 36 5-40 26-62 (287)
493 PRK01368 murD UDP-N-acetylmura 90.5 0.39 8.5E-06 48.2 5.0 38 1-39 1-38 (454)
494 PRK01710 murD UDP-N-acetylmura 90.4 0.35 7.6E-06 48.6 4.6 33 7-39 15-47 (458)
495 PRK13984 putative oxidoreducta 90.4 4.2 9.1E-05 42.4 12.7 30 7-36 419-454 (604)
496 KOG2755|consensus 90.3 0.22 4.8E-06 45.5 2.7 34 9-42 2-37 (334)
497 PRK13394 3-hydroxybutyrate deh 90.3 0.5 1.1E-05 43.1 5.2 37 3-39 4-41 (262)
498 PRK05600 thiamine biosynthesis 90.2 0.44 9.6E-06 46.4 5.0 36 5-40 40-76 (370)
499 cd05191 NAD_bind_amino_acid_DH 90.2 0.71 1.5E-05 34.7 5.1 33 5-37 22-55 (86)
500 cd01491 Ube1_repeat1 Ubiquitin 90.2 0.27 5.9E-06 46.0 3.3 36 4-39 17-53 (286)
No 1
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=4.9e-36 Score=292.26 Aligned_cols=314 Identities=14% Similarity=0.137 Sum_probs=201.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH 86 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 86 (379)
+||+||||||+|+++|+.|++.|++|+|+|+.+........+++++ ++++++.++|+++|+|+.+.+.+.++..+.++
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~--~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 79 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTT--ALTPHSKNFLFSIDIWEELEKFVAEMQDIYVV 79 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEE--EeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEE
Confidence 5999999999999999999999999999999864332222346776 78999999999999999998777788888888
Q ss_pred ecCCcE-EEeeCC------CCCcH--------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEe
Q psy9141 87 GQNGKL-REIPYD------PVHNQ--------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIG 151 (379)
Q Consensus 87 ~~~g~~-~~~~~~------~~~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~ 151 (379)
+.++.. ..++.. +...+ +.+.+.++++++++++++++..+++++++.+. ++ + ++||+||+
T Consensus 80 ~~~g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~-~~-~---~~adlvIg 154 (374)
T PRK06617 80 DNKASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFD-DK-Q---IKCNLLII 154 (374)
T ss_pred ECCCceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEc-CC-E---EeeCEEEE
Confidence 766643 222211 11111 33445567999999999999999999999887 76 5 99999999
Q ss_pred cCCCChHHHHHh-hhcCCCCccceeeeeee----------EEEeeCCCCCccccccccceeeecCCCC-eEEEEEecC--
Q psy9141 152 ADGAYSGVRKCL-MKQSMFNYSQTYIEHGY----------MELCIPPSEDNEVWLYKNRLLSSVPEVR-KRISLRAQS-- 217 (379)
Q Consensus 152 AdG~~S~vr~~l-~~~~~~~~~~~~i~~~~----------~~~~~p~~~~~~~~~~p~~~~~~~p~~~-~~~~~~~~~-- 217 (379)
|||.+|.+|+.+ ++....+| +.++.... ++.+.+ .++++++|. ++.. ..++|....
T Consensus 155 ADG~~S~vR~~l~~~~~~~~y-~~~~~~~v~~~~~~~~~~~~~~~~---~g~~~~lPl------~~~~~~~~vw~~~~~~ 224 (374)
T PRK06617 155 CDGANSKVRSHYFANEIEKPY-QTALTFNIKHEKPHENCAMEHFLP---LGPFALLPL------KDQYASSVIWSTSSDQ 224 (374)
T ss_pred eCCCCchhHHhcCCCcccccC-CeEEEEEEeccCCCCCEEEEEecC---CCCEEEeEC------CCCCeEEEEEeCCHHH
Confidence 999999999988 44444555 44431111 122222 244444442 1111 122222211
Q ss_pred CCceeeecCCCCCCChhhhcccccccccccCCcccC----CCccccCCCCCccccCCcEEEe-eecccCCCcchhhhhHH
Q psy9141 218 LKSLMNFPRADQGGDKRDCLLHEGTSRILVPNMRLS----NHLDRDQPCKPLLDFKNPIKIQ-SHAVVNEFYKQESLIVA 292 (379)
Q Consensus 218 ~~~~~~~p~~~~~~~~~~~l~~~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~liG-Ah~~~~P~~GQG~n~gl 292 (379)
...+...|.+.+ .+.+... +....+..... .+.....++..|+ ..|++|+| |++.+||+.|||+|+||
T Consensus 225 ~~~~~~~~~~~~----~~~~~~~--~~~~~~~i~~~~~~~~~~l~~~~~~~~~-~grv~LiGDAAH~~~P~~GQG~n~gl 297 (374)
T PRK06617 225 AALIVNLPVEEV----RFLTQRN--AGNSLGKITIDSEISSFPLKARIANRYF-HNRIVLIADTAHTVHPLAGQGLNQGI 297 (374)
T ss_pred HHHHHcCCHHHH----HHHHHHh--hchhcCceeeccceeEEEeeeeecccee-cCCEEEEEcccccCCCCccccHHHHH
Confidence 111122221111 1111100 00000111000 0111222445666 35899999 44444599999999999
Q ss_pred HHHHHHHHhhc--cccccccccc-------hhhhhheeeeEEeeecccccchhhHHHHHHhhhhc
Q psy9141 293 SLCQEKIEKMF--DNTSTYKSRH-------INFIHRSYHLYTVDIGVHKVTESSILNLLLRGMKK 348 (379)
Q Consensus 293 ~Da~~L~~~l~--~~~~~~~~~~-------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~ 348 (379)
+|+..|+++|. ..+.+|++++ +..++.+.++|+++.++.+ .+-|+.+.-+.+
T Consensus 298 ~Da~~La~~L~~~~~L~~Ye~~R~~~~~~~~~~t~~l~~~f~~~~~~~~----~~R~~~l~~~~~ 358 (374)
T PRK06617 298 KDIEILSMIVSNNGTLQEYQKLRQEDNFIMYKLTDELNNIFSNYSKNLR----CLRQIGFKVINN 358 (374)
T ss_pred HHHHHHHHHHcCcchHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchHHH----HHHHHHHHHHhc
Confidence 99999999985 3567888776 6667777779988777544 556666665555
No 2
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=100.00 E-value=9.5e-36 Score=291.45 Aligned_cols=318 Identities=21% Similarity=0.228 Sum_probs=203.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC-CCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeE
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE-DIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARM 84 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~-~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~ 84 (379)
.+||+||||||+||++|+.|+++|++|+|||+.+ ..... ++++ +++++++++|+++|+++++...+.+.....
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~----~r~~--~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~ 75 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLER----GRGI--ALSPNALRALERLGLWDRLEALGVPPLHVM 75 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccC----ceee--eecHhHHHHHHHcCChhhhhhccCCceeeE
Confidence 4799999999999999999999999999999982 33333 5766 799999999999999888888766555444
Q ss_pred EEecCCc-EEEeeCCCC--------CcH--------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeec
Q psy9141 85 IHGQNGK-LREIPYDPV--------HNQ--------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQ 147 (379)
Q Consensus 85 ~~~~~g~-~~~~~~~~~--------~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~ad 147 (379)
.++..+. ...++.... ..+ +.+.+.++++++++++|+.++.+++.+++++..||++ ++||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~---~~a~ 152 (387)
T COG0654 76 VVDDGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGET---LDAD 152 (387)
T ss_pred EEecCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcE---EecC
Confidence 4443332 222221111 111 4555677899999999999999999988877646765 9999
Q ss_pred EEEecCCCChHHHHHhh-h-cCCCCccceeeeeee----------EEEeeCCCCCccccccccceeeecCCCCeEEEEE-
Q psy9141 148 LIIGADGAYSGVRKCLM-K-QSMFNYSQTYIEHGY----------MELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLR- 214 (379)
Q Consensus 148 lVV~AdG~~S~vr~~l~-~-~~~~~~~~~~i~~~~----------~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~~- 214 (379)
+||+|||.+|.+|+.+. . .....|.+.++.... ++.+.+ .+++++.|. ++....++|+
T Consensus 153 llVgADG~~S~vR~~~~~~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~p~------~~~~~~~~~~~ 223 (387)
T COG0654 153 LLVGADGANSAVRRAAGIAEFSGRDYGQTALVANVEPEEPHEGRAGERFTH---AGPFALLPL------PDNRSSVVWSL 223 (387)
T ss_pred EEEECCCCchHHHHhcCCCCccCCCCCceEEEEEeecCCCCCCeEEEEecC---CCceEEEec------CCCceeEEEEC
Confidence 99999999999999994 3 334477777652211 122222 234444442 2122222222
Q ss_pred -ecCCCceeeecCCCCCCChhhhcccccccccccCCcccC----CCccccCCCCCccccCCcEEEe-eecccCCCcchhh
Q psy9141 215 -AQSLKSLMNFPRADQGGDKRDCLLHEGTSRILVPNMRLS----NHLDRDQPCKPLLDFKNPIKIQ-SHAVVNEFYKQES 288 (379)
Q Consensus 215 -~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~liG-Ah~~~~P~~GQG~ 288 (379)
+........++++.+...+...+..... .+..... ........+.+|.. .+++|+| |++++||++|||+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~pl~~~~a~~~~~-~Rv~LiGDAAH~~~P~~gQG~ 298 (387)
T COG0654 224 PPGPAEDLQGLSDEEFLRELQRRLGERDP----LGRVTLVSSRSAFPLSLRVAERYRR-GRVVLIGDAAHAMHPLAGQGA 298 (387)
T ss_pred ChhhHHHHhcCCHHHHHHHHHHhcCcccc----cceEEEccccccccccchhhhheec-CcEEEEeeccccCCCccccch
Confidence 2222222233333322222222222200 0111110 11222233344542 4799999 5555569999999
Q ss_pred hhHHHHHHHHHHhhccc---------cccccccc-------hhhhhheeeeEEeeecccccchhhHHHHHHhhhhccC
Q psy9141 289 LIVASLCQEKIEKMFDN---------TSTYKSRH-------INFIHRSYHLYTVDIGVHKVTESSILNLLLRGMKKNV 350 (379)
Q Consensus 289 n~gl~Da~~L~~~l~~~---------~~~~~~~~-------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (379)
|+|++|+.+|+++|.+. +.+|++++ +.+++.+.++|.++.++.+ .+.|+.++.+....
T Consensus 299 nlgl~Da~~La~~L~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~----~~r~~~l~~~~~~~ 372 (387)
T COG0654 299 NLALEDAAALAEALAAAPRPGADAAALAAYEARRRPRAEAIQKLSRALGRLFSADGPFAR----FLRNLGLRLLDRLP 372 (387)
T ss_pred hhhhhhHHHHHHHHHHHhhcCccHHHHHHHHHhhhhHHHHHHHHHHHHhhhhccCCcHHH----HHHHHHHHhhccCc
Confidence 99999999999999753 33577776 5556666678888776665 67777777765544
No 3
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=2.6e-35 Score=288.19 Aligned_cols=333 Identities=17% Similarity=0.206 Sum_probs=200.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC--CCCCCCCcccccccCHHHHHHHHHCCChHHHHhC-CCCc
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR--NSGLSEGKSINLALSVRGREALRRIGLEDKLLAH-GIPM 80 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~--~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~-~~~~ 80 (379)
|..+||+||||||+|+++|+.|++.|++|+|||+.+... .....+.+.+ +++++++++|+++|+|+.+... ..++
T Consensus 1 ~~~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~--~l~~~~~~~L~~lG~~~~~~~~~~~~~ 78 (384)
T PRK08849 1 MNKYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVS--AISQTSVDLLESLGAWSSIVAMRVCPY 78 (384)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEE--EecHHHHHHHHHCCCchhhhHhhCCcc
Confidence 345899999999999999999999999999999886321 1111123433 6899999999999999998763 5566
Q ss_pred eeeEEEecCCcEEEee---CCCC-----C-cH-------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEE
Q psy9141 81 RARMIHGQNGKLREIP---YDPV-----H-NQ-------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKIT 144 (379)
Q Consensus 81 ~~~~~~~~~g~~~~~~---~~~~-----~-~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i 144 (379)
..+..++.......+. +... . .. ..+.+.++++++++++|++++.++++++++++ +|++ +
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~-~g~~---~ 154 (384)
T PRK08849 79 KRLETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLE-SGAE---I 154 (384)
T ss_pred ceEEEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEEC-CCCE---E
Confidence 6555554322211111 1000 0 11 23345578999999999999999999999998 8877 9
Q ss_pred eecEEEecCCCChHHHHHh-hhcCCCCccceeeeeee----------EEEeeCCCCCccccccccceeeecCCCCeEEEE
Q psy9141 145 DNQLIIGADGAYSGVRKCL-MKQSMFNYSQTYIEHGY----------MELCIPPSEDNEVWLYKNRLLSSVPEVRKRISL 213 (379)
Q Consensus 145 ~adlVV~AdG~~S~vr~~l-~~~~~~~~~~~~i~~~~----------~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~ 213 (379)
+||+||+|||.+|.+|+.+ ++....+|.+..+.... ++.+.| .++.++.|. ++....++|
T Consensus 155 ~~~lvIgADG~~S~vR~~~gi~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~g~~~~~pl------~~~~~~~~~ 225 (384)
T PRK08849 155 EAKWVIGADGANSQVRQLAGIGITAWDYRQHCMLINVETEQPQQDITWQQFTP---SGPRSFLPL------CGNQGSLVW 225 (384)
T ss_pred EeeEEEEecCCCchhHHhcCCCceeccCCCeEEEEEEEcCCCCCCEEEEEeCC---CCCEEEeEc------CCCceEEEE
Confidence 9999999999999999998 66666677665431111 111111 122222221 222222333
Q ss_pred EecC--CCceeeecCCCCCCChhhhcccccccccccCCcccC---CCccccCCCCCccccCCcEEEe--eecccCCCcch
Q psy9141 214 RAQS--LKSLMNFPRADQGGDKRDCLLHEGTSRILVPNMRLS---NHLDRDQPCKPLLDFKNPIKIQ--SHAVVNEFYKQ 286 (379)
Q Consensus 214 ~~~~--~~~~~~~p~~~~~~~~~~~l~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~liG--Ah~~~~P~~GQ 286 (379)
+... .......+.+.+.+.+.+.+... . +.+... .+.....++..|+ ..|++|+| ||+| ||++||
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~----~~~~~~~~~~~~l~~~~~~~~~-~grv~LlGDAAH~~-~P~~GQ 297 (384)
T PRK08849 226 YDSPKRIKQLSAMNPEQLRSEILRHFPAE--L----GEIKVLQHGSFPLTRRHAQQYV-KNNCVLLGDAAHTI-NPLAGQ 297 (384)
T ss_pred ECCHHHHHHHHcCCHHHHHHHHHHHhhhh--h----CcEEeccceEeeccccccchhc-cCCEEEEEcccccC-CCCccc
Confidence 2111 00111111111111111111111 0 111100 0111223455666 35899999 5555 599999
Q ss_pred hhhhHHHHHHHHHHhhcc-------ccccccccc-------hhhhhheeeeEEeeecccccchhhHHHHHHhhhhccCCC
Q psy9141 287 ESLIVASLCQEKIEKMFD-------NTSTYKSRH-------INFIHRSYHLYTVDIGVHKVTESSILNLLLRGMKKNVPM 352 (379)
Q Consensus 287 G~n~gl~Da~~L~~~l~~-------~~~~~~~~~-------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (379)
|+|+|++||.+|+++|.+ .+..|++++ +.+++.++++|+.+.+|.+ -.-|+.++-+.+..|+
T Consensus 298 G~n~al~Da~~L~~~l~~~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~~~~----~~R~~~l~~~~~~~~~ 373 (384)
T PRK08849 298 GVNLGFKDVDVLLAETEKQGVLNDASFARYERRRRPDNLLMQTGMDLFYKTFSNSLTPLK----FVRNAALKLAENSGPL 373 (384)
T ss_pred hHhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchHHH----HHHHHHHHHHhccHHH
Confidence 999999999999999863 344577665 5556666778887655433 3455555544443332
Q ss_pred ChhhHHHHHHHhccc
Q psy9141 353 PNKKLDMILESANGL 367 (379)
Q Consensus 353 ~~~~~~~~~~~~~~~ 367 (379)
+ +.+.+.|||+
T Consensus 374 -k---~~~~~~~~g~ 384 (384)
T PRK08849 374 -K---TQVLKYALGM 384 (384)
T ss_pred -H---HHHHHHHcCC
Confidence 1 2345556664
No 4
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=100.00 E-value=1.6e-35 Score=291.64 Aligned_cols=336 Identities=14% Similarity=0.169 Sum_probs=204.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccC-CCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhC-CCCce
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAR-EDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAH-GIPMR 81 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~-~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~-~~~~~ 81 (379)
|..+||+||||||+|+++|+.|++.|++|+|+|+. +........+.+++ +++++++++|+++|+|+.+.+. +.++.
T Consensus 2 m~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~--~l~~~~~~~L~~lGl~~~l~~~~~~~~~ 79 (405)
T PRK08850 2 MQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVS--ALSRSSEHILRNLGAWQGIEARRAAPYI 79 (405)
T ss_pred CCcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCccee--cccHHHHHHHHhCCchhhhhhhhCCccc
Confidence 45789999999999999999999999999999997 32221112345665 7899999999999999999864 67777
Q ss_pred eeEEEecCCcE-EEeeC--------CCCCcH--------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEE
Q psy9141 82 ARMIHGQNGKL-REIPY--------DPVHNQ--------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKIT 144 (379)
Q Consensus 82 ~~~~~~~~g~~-~~~~~--------~~~~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i 144 (379)
.+.+++.++.. ..++. +....+ +.+.+.++++++++++|++++.+++.+++++. +|++ +
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~-~g~~---~ 155 (405)
T PRK08850 80 AMEVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLD-NGQA---L 155 (405)
T ss_pred EEEEEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEEC-CCCE---E
Confidence 78887765211 11111 111111 33445568999999999999998889999998 8887 9
Q ss_pred eecEEEecCCCChHHHHHh-hhcCCCCccceeeeeeeEEEeeCCCCCccccccccceeeecCCCCeEEEEEecCCCcee-
Q psy9141 145 DNQLIIGADGAYSGVRKCL-MKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLKSLM- 222 (379)
Q Consensus 145 ~adlVV~AdG~~S~vr~~l-~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~- 222 (379)
+||+||+|||.+|.+|+.+ ++....+|.+.++.... ....+. .. ....++... ..+.+.|...+..+
T Consensus 156 ~a~lvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v-~~~~~~--~~-------~~~~~~~~~-g~~~~lp~~~~~~~~ 224 (405)
T PRK08850 156 TAKLVVGADGANSWLRRQMDIPLTHWDYGHSALVANV-RTVDPH--NS-------VARQIFTPQ-GPLAFLPMSEPNMSS 224 (405)
T ss_pred EeCEEEEeCCCCChhHHHcCCCeeEEeeccEEEEEEE-EccCCC--CC-------EEEEEEcCC-CceEEEECCCCCeEE
Confidence 9999999999999999998 55566667666542211 111111 00 011111111 12233333222111
Q ss_pred ---eecC-----------CCCCCChhhhcccc-cccccccCCcccCCCccccCCCCCccccCCcEEEe-eecccCCCcch
Q psy9141 223 ---NFPR-----------ADQGGDKRDCLLHE-GTSRILVPNMRLSNHLDRDQPCKPLLDFKNPIKIQ-SHAVVNEFYKQ 286 (379)
Q Consensus 223 ---~~p~-----------~~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liG-Ah~~~~P~~GQ 286 (379)
..|. +++...+.+.+... +.... .... ..+.........|. ..|++++| |++.+||+.||
T Consensus 225 ~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~--~~~pl~~~~~~~~~-~~rv~LiGDAAH~~~P~~GQ 300 (405)
T PRK08850 225 IVWSTEPLRAEALLAMSDEQFNKALTAEFDNRLGLCEV-VGER--QAFPLKMRYARDFV-RERVALVGDAAHTIHPLAGQ 300 (405)
T ss_pred EEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhhCcEEE-cccc--cEEecceeeccccc-cCcEEEEEhhhhcCCccccc
Confidence 1111 11111111111111 00000 0000 00011112234555 34899999 44444599999
Q ss_pred hhhhHHHHHHHHHHhhcc------------ccccccccc-------hhhhhheeeeEEeeecccccchhhHHHHHHhhhh
Q psy9141 287 ESLIVASLCQEKIEKMFD------------NTSTYKSRH-------INFIHRSYHLYTVDIGVHKVTESSILNLLLRGMK 347 (379)
Q Consensus 287 G~n~gl~Da~~L~~~l~~------------~~~~~~~~~-------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~ 347 (379)
|+|+|++|+.+|+++|.+ .+.+|++++ +..++.+.++|+.+.++.+ +.-|+++.-+.
T Consensus 301 G~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~----~~R~~~l~~~~ 376 (405)
T PRK08850 301 GVNLGLLDAASLAQEILALWQQGRDIGLKRNLRGYERWRKAEAAKMIAAMQGFRDLFSGSNPAKK----LVRGIGMSLAG 376 (405)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHCCCchHHH----HHHHHHHHHHh
Confidence 999999999999999853 244577665 5566677778887766543 55566555444
Q ss_pred ccCCCChhhHHHHHHHhcccc
Q psy9141 348 KNVPMPNKKLDMILESANGLG 368 (379)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~ 368 (379)
+. |..+ +.++..++|+.
T Consensus 377 ~~-~~~k---~~~~~~~~g~~ 393 (405)
T PRK08850 377 QL-PGAK---DEIMKRALGLK 393 (405)
T ss_pred hC-HHHH---HHHHHHHhCCC
Confidence 42 2221 45667788864
No 5
>PRK08013 oxidoreductase; Provisional
Probab=100.00 E-value=3e-34 Score=282.11 Aligned_cols=337 Identities=15% Similarity=0.150 Sum_probs=199.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCC--CCCCcccccccCHHHHHHHHHCCChHHHHhC-CCCc
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSG--LSEGKSINLALSVRGREALRRIGLEDKLLAH-GIPM 80 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~--~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~-~~~~ 80 (379)
|.++||+||||||+|+++|+.|++.|++|+|+|+.+.+.... ..+-+.. +++++++++|+++|+|+.+.+. ..++
T Consensus 1 m~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~--~l~~~s~~~L~~lGl~~~~~~~~~~~~ 78 (400)
T PRK08013 1 MQSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVS--AINAASEKLLTRLGVWQDILARRASCY 78 (400)
T ss_pred CCcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceee--ecchhHHHHHHHcCCchhhhhhcCccc
Confidence 446899999999999999999999999999999998654211 1122433 6789999999999999998765 5677
Q ss_pred eeeEEEecC--CcEEEee---CCCC-----CcH--------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeE
Q psy9141 81 RARMIHGQN--GKLREIP---YDPV-----HNQ--------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETK 142 (379)
Q Consensus 81 ~~~~~~~~~--g~~~~~~---~~~~-----~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~ 142 (379)
....+++.+ +.. .+. ++.. ..+ +.+.+.++++++++++|++++.+++++++++. +|++
T Consensus 79 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~-~g~~-- 154 (400)
T PRK08013 79 HGMEVWDKDSFGRI-AFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLK-DGSM-- 154 (400)
T ss_pred cEEEEEeCCCCceE-EEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEc-CCCE--
Confidence 777777654 221 111 1111 111 23444568999999999999998899999998 8887
Q ss_pred EEeecEEEecCCCChHHHHHh-hhcCCCCccceeeeeeeEEEeeCCCCCccccccccceeeecCCCCeEEEEEecCCCc-
Q psy9141 143 ITDNQLIIGADGAYSGVRKCL-MKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLKS- 220 (379)
Q Consensus 143 ~i~adlVV~AdG~~S~vr~~l-~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~- 220 (379)
++||+||+|||++|.+|+.+ ++....+|.+.++... .+...|. .+ .. ...+.++. .+.+.|...+.
T Consensus 155 -i~a~lvVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~-v~~~~~~--~~-~~-----~~~~~~~g--~~~~~p~~~~~~ 222 (400)
T PRK08013 155 -LTARLVVGADGANSWLRNKADIPLTFWDYQHHALVAT-IRTEEPH--DA-VA-----RQVFHGDG--ILAFLPLSDPHL 222 (400)
T ss_pred -EEeeEEEEeCCCCcHHHHHcCCCccccccCcEEEEEE-EeccCCC--CC-EE-----EEEEcCCC--CEEEEECCCCCe
Confidence 99999999999999999998 6666666676654221 1111111 00 00 01111111 12222322111
Q ss_pred --ee-eecCCC---CCCChhhhcccc--cccccccCCcccC----CCccccCCCCCccccCCcEEEe-eecccCCCcchh
Q psy9141 221 --LM-NFPRAD---QGGDKRDCLLHE--GTSRILVPNMRLS----NHLDRDQPCKPLLDFKNPIKIQ-SHAVVNEFYKQE 287 (379)
Q Consensus 221 --~~-~~p~~~---~~~~~~~~l~~~--g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~liG-Ah~~~~P~~GQG 287 (379)
+. .++.+. ......+.|.+. ..+....+..... .+......+..|+ ..|++|+| |++.+||+.|||
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~-~grv~LiGDAAH~~~P~~GQG 301 (400)
T PRK08013 223 CSIVWSLSPEEAQRMQQAPEEEFNRALAIAFDNRLGLCELESERQVFPLTGRYARQFA-AHRLALVGDAAHTIHPLAGQG 301 (400)
T ss_pred EEEEEEcCHHHHHHHHcCCHHHHHHHHHHHHhHhhCceEecCCccEEecceeeccccc-CCcEEEEechhhcCCccccCc
Confidence 11 112110 000011111110 0000000000000 0011112344555 35899999 444455999999
Q ss_pred hhhHHHHHHHHHHhhcc------------ccccccccc-------hhhhhheeeeEEeeecccccchhhHHHHHHhhhhc
Q psy9141 288 SLIVASLCQEKIEKMFD------------NTSTYKSRH-------INFIHRSYHLYTVDIGVHKVTESSILNLLLRGMKK 348 (379)
Q Consensus 288 ~n~gl~Da~~L~~~l~~------------~~~~~~~~~-------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~ 348 (379)
+|+|++||.+|+++|.. .+..|++++ +..++-+.++|+.+.|+.+ +.-|++++-+.+
T Consensus 302 ~n~gi~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~l~~~~~~~~~----~~R~~~l~~~~~ 377 (400)
T PRK08013 302 VNLGFMDAAELIAELRRLHRQGKDIGQHLYLRRYERSRKHSAALMLAGMQGFRDLFAGNNPAKK----LLRDIGLKLADT 377 (400)
T ss_pred hhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHH----HHHHHHHHHHhh
Confidence 99999999999999852 245677665 3445556668877666444 445555554433
Q ss_pred cCCCChhhHHHHHHHhccc
Q psy9141 349 NVPMPNKKLDMILESANGL 367 (379)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~ 367 (379)
.|..+ +.+...+||+
T Consensus 378 -~~~~~---~~~~~~~~g~ 392 (400)
T PRK08013 378 -LPGVK---PQLIRQAMGL 392 (400)
T ss_pred -CHHHH---HHHHHHHccC
Confidence 22111 3344556764
No 6
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=100.00 E-value=5.6e-34 Score=279.54 Aligned_cols=322 Identities=17% Similarity=0.192 Sum_probs=194.5
Q ss_pred CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCC-CCCCCcccccccCHHHHHHHHHCCChHHHHhC-CC
Q psy9141 1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNS-GLSEGKSINLALSVRGREALRRIGLEDKLLAH-GI 78 (379)
Q Consensus 1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~-~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~-~~ 78 (379)
|+.+..+||+||||||+|+++|+.|+++|++|+|||+.+.+... ...+.+.+ ++++++.++|+++|+|+.+.+. ..
T Consensus 1 ~~~~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~--~l~~~~~~~l~~lGl~~~~~~~~~~ 78 (392)
T PRK08773 1 MSRRSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVY--AFAADNAALLDRLGVWPAVRAARAQ 78 (392)
T ss_pred CCCCCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEE--EecHHHHHHHHHCCchhhhhHhhCC
Confidence 66566799999999999999999999999999999998754321 11223444 6889999999999999998764 56
Q ss_pred CceeeEEEecCCc-EEEeeCCC--------CCcH-------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeE
Q psy9141 79 PMRARMIHGQNGK-LREIPYDP--------VHNQ-------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETK 142 (379)
Q Consensus 79 ~~~~~~~~~~~g~-~~~~~~~~--------~~~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~ 142 (379)
++....+++..+. ...++... ...+ ....+..+++++++++|++++.+++++++++. +|++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~-~g~~-- 155 (392)
T PRK08773 79 PYRRMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLD-DGRR-- 155 (392)
T ss_pred cccEEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEEC-CCCE--
Confidence 6766666664432 12221110 0111 12233468999999999999998889998888 8876
Q ss_pred EEeecEEEecCCCChHHHHHh-hhcCCCCccceeeeeeeEEEeeCCCCCccccccccceeeecCCCCeEEEEEecCCCce
Q psy9141 143 ITDNQLIIGADGAYSGVRKCL-MKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLKSL 221 (379)
Q Consensus 143 ~i~adlVV~AdG~~S~vr~~l-~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~ 221 (379)
++||+||+|||.+|.+|+.+ ++....+|.+..+. .+.+...|. .... ...+.++. .+.+.|...+..
T Consensus 156 -~~a~~vV~AdG~~S~vr~~~g~~~~~~~~~~~~~~-~~v~~~~~~-~~~~-------~~~~~~~g--~~~~lP~~~~~~ 223 (392)
T PRK08773 156 -LEAALAIAADGAASTLRELAGLPVSRHDYAQRGVV-AFVDTEHPH-QATA-------WQRFLPTG--PLALLPFADGRS 223 (392)
T ss_pred -EEeCEEEEecCCCchHHHhhcCCceEEEeccEEEE-EEEEccCCC-CCEE-------EEEeCCCC--cEEEEECCCCce
Confidence 99999999999999999987 44444445544431 111111111 0000 00111111 122222221111
Q ss_pred --e-eecC-----------CCCCCChhhhcccc-cccccccCCcccCCCccccCCCCCccccCCcEEEe-eecccCCCcc
Q psy9141 222 --M-NFPR-----------ADQGGDKRDCLLHE-GTSRILVPNMRLSNHLDRDQPCKPLLDFKNPIKIQ-SHAVVNEFYK 285 (379)
Q Consensus 222 --~-~~p~-----------~~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liG-Ah~~~~P~~G 285 (379)
. .+|. +.+..++.+.+... +.......... +.....++..|. ..|++|+| |++.+||+.|
T Consensus 224 ~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~-~~rv~LiGDAAH~~~P~~G 299 (392)
T PRK08773 224 SIVWTLPDAEAERVLALDEAAFSRELTQAFAARLGEVRVASPRTA---FPLRRQLVQQYV-SGRVLTLGDAAHVVHPLAG 299 (392)
T ss_pred EEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhhcCeEecCCccE---eechhhhhhhhc-CCcEEEEechhhcCCCchh
Confidence 1 1121 11111122222211 11111000000 011122345565 35899999 4444559999
Q ss_pred hhhhhHHHHHHHHHHhhcc------------ccccccccc-------hhhhhheeeeEEeeecccccchhhHHHHHHhhh
Q psy9141 286 QESLIVASLCQEKIEKMFD------------NTSTYKSRH-------INFIHRSYHLYTVDIGVHKVTESSILNLLLRGM 346 (379)
Q Consensus 286 QG~n~gl~Da~~L~~~l~~------------~~~~~~~~~-------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ 346 (379)
||+|+|++|+..|+++|.+ .+.+|++++ +..++-+.++|+++.++.+ ++-|+.+.-+
T Consensus 300 qG~n~al~Da~~La~~L~~~~~~~~~~~~~~~l~~y~~~R~~~~~~~~~~~~~l~~~f~~~~~~~~----~~r~~~l~~~ 375 (392)
T PRK08773 300 QGVNLGLRDVAALQQLVRQAHARRADWAAPHRLQRWARTRRSDNTVAAYGFDAINRVFSNDEMHLT----LLRGSVLGLA 375 (392)
T ss_pred chhhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH----HHHHHHHHHH
Confidence 9999999999999999874 344687765 3334556678999888666 4444444433
Q ss_pred h
Q psy9141 347 K 347 (379)
Q Consensus 347 ~ 347 (379)
.
T Consensus 376 ~ 376 (392)
T PRK08773 376 G 376 (392)
T ss_pred h
Confidence 3
No 7
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=4.2e-34 Score=280.01 Aligned_cols=333 Identities=16% Similarity=0.194 Sum_probs=205.1
Q ss_pred CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCc
Q psy9141 1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPM 80 (379)
Q Consensus 1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~ 80 (379)
|+ |+.+||+||||||+|+++|+.|+++|++|+|||+.+... +++++ ++.+++.++|+++|+|+.+.+.+.++
T Consensus 3 ~~-~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~-----~~r~~--~l~~~s~~~l~~lgl~~~~~~~~~~~ 74 (388)
T PRK07494 3 ME-KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYA-----DLRTT--ALLGPSIRFLERLGLWARLAPHAAPL 74 (388)
T ss_pred CC-CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCC-----Ccchh--hCcHHHHHHHHHhCchhhhHhhccee
Confidence 44 678999999999999999999999999999999987542 24444 67889999999999999998888888
Q ss_pred eeeEEEecCCcEEE---eeC----------CCCCcH--------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCc
Q psy9141 81 RARMIHGQNGKLRE---IPY----------DPVHNQ--------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNS 139 (379)
Q Consensus 81 ~~~~~~~~~g~~~~---~~~----------~~~~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~ 139 (379)
..+.+++.++.... ..+ ++...+ +.+.+.+++. +++++|++++.+++++++++. +|+
T Consensus 75 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~~~v~~~-~g~ 152 (388)
T PRK07494 75 QSMRIVDATGRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDEVTVTLA-DGT 152 (388)
T ss_pred eEEEEEeCCCCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCeEEEEEC-CCC
Confidence 88888876553210 111 111111 2334445666 889999999999999999888 887
Q ss_pred eeEEEeecEEEecCCCChHHHHHh-hhcCCCCccceeeeeeeEEEeeCCC--------CCccccccccceeeecCCCCeE
Q psy9141 140 ETKITDNQLIIGADGAYSGVRKCL-MKQSMFNYSQTYIEHGYMELCIPPS--------EDNEVWLYKNRLLSSVPEVRKR 210 (379)
Q Consensus 140 ~~~~i~adlVV~AdG~~S~vr~~l-~~~~~~~~~~~~i~~~~~~~~~p~~--------~~~~~~~~p~~~~~~~p~~~~~ 210 (379)
+ ++||+||+|||.+|.+|+.+ ++.....|.+.++...+ ....|.. +.+++++.|. ++....
T Consensus 153 ~---~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~g~~~~~Pl------~~~~~~ 222 (388)
T PRK07494 153 T---LSARLVVGADGRNSPVREAAGIGVRTWSYPQKALVLNF-THSRPHQNVSTEFHTEGGPFTQVPL------PGRRSS 222 (388)
T ss_pred E---EEEeEEEEecCCCchhHHhcCCCceecCCCCEEEEEEE-eccCCCCCEEEEEeCCCCcEEEEEC------CCCcEE
Confidence 7 99999999999999999998 55556677776542211 1111110 1122222221 122122
Q ss_pred EEEEecC--CCceeeecCCCCCCChhhhcccccccccccCCcccCC----CccccCCCCCccccCCcEEEe-eecccCCC
Q psy9141 211 ISLRAQS--LKSLMNFPRADQGGDKRDCLLHEGTSRILVPNMRLSN----HLDRDQPCKPLLDFKNPIKIQ-SHAVVNEF 283 (379)
Q Consensus 211 ~~~~~~~--~~~~~~~p~~~~~~~~~~~l~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~liG-Ah~~~~P~ 283 (379)
++|.... ..++...+.+ +..+.+.+. +....+.+.... +.........|. ..|++++| |++.+||+
T Consensus 223 ~v~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~l~~~~~~~~~~~~~l~~~~~~~~~-~~rv~LiGDAAH~~~P~ 295 (388)
T PRK07494 223 LVWVVRPAEAERLLALSDA----ALSAAIEER--MQSMLGKLTLEPGRQAWPLSGQVAHRFA-AGRTALVGEAAHVFPPI 295 (388)
T ss_pred EEEECCHHHHHHHHcCCHH----HHHHHHHHH--HhhhcCCeEEccCCcEeechHHHHHhhc-cCceEEEEhhhhcCCch
Confidence 2222111 0000111111 111111110 000111111110 011111123444 34899999 44445599
Q ss_pred cchhhhhHHHHHHHHHHhhcc---------ccccccccc-------hhhhhheeeeEEeeecccccchhhHHHHHHhhhh
Q psy9141 284 YKQESLIVASLCQEKIEKMFD---------NTSTYKSRH-------INFIHRSYHLYTVDIGVHKVTESSILNLLLRGMK 347 (379)
Q Consensus 284 ~GQG~n~gl~Da~~L~~~l~~---------~~~~~~~~~-------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~ 347 (379)
+|||+|+|++|+..|+++|.+ .+.+|++++ +..++.+.++|+.+.++.+ ..-|+++.-+.
T Consensus 296 ~GqG~n~~l~Da~~La~~L~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~----~~R~~~l~~~~ 371 (388)
T PRK07494 296 GAQGLNLGLRDVATLVEIVEDRPEDPGSAAVLAAYDRARRPDILSRTASVDLLNRSLLSDFLPVQ----DLRAAGLHLLY 371 (388)
T ss_pred hhcccchhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHH----HHHHHHHHHHh
Confidence 999999999999999999864 333577665 4667777788888777753 45666666554
Q ss_pred ccCCCChhhHHHHHHHhcccc
Q psy9141 348 KNVPMPNKKLDMILESANGLG 368 (379)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~ 368 (379)
+ .|..++ .+.+.|||-|
T Consensus 372 ~-~~~~~~---~~~~~~~~~~ 388 (388)
T PRK07494 372 S-FGPLRR---LFMREGLGPG 388 (388)
T ss_pred h-CHHHHH---HHHHHhcCCC
Confidence 4 232222 3456777754
No 8
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=100.00 E-value=5.8e-34 Score=283.10 Aligned_cols=318 Identities=18% Similarity=0.232 Sum_probs=197.9
Q ss_pred CcEEEECCChHHHHHHHHHHh----CCCcEEEEccCCCCCCC--------CCCCCcccccccCHHHHHHHHHCCChHHHH
Q psy9141 7 KSVVIVGGGLVGSLSACMFAK----NQYEVNLYEAREDIRNS--------GLSEGKSINLALSVRGREALRRIGLEDKLL 74 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~----~G~~V~viE~~~~~~~~--------~~~~g~~i~~al~~~~~~~l~~lGl~~~l~ 74 (379)
|||+||||||+|+++|+.|++ +|++|+|||+.+.+... +..++|++ +++++++++|+++|+|+.+.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~--~l~~~s~~~L~~lG~~~~l~ 78 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVS--SITPASISFFKKIGAWDHIQ 78 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeE--EcCHHHHHHHHHcCchhhhh
Confidence 699999999999999999999 89999999996543321 11346766 79999999999999999997
Q ss_pred hC-CCCceeeEEEecCCcEEEeeCCC---------CCcH--------HHHhcCC--CCeEEeCceEEEEEec-------C
Q psy9141 75 AH-GIPMRARMIHGQNGKLREIPYDP---------VHNQ--------VELEQYP--DCNIYFQHKLINLDVN-------S 127 (379)
Q Consensus 75 ~~-~~~~~~~~~~~~~g~~~~~~~~~---------~~~~--------~~~~~~~--gv~i~~~~~v~~i~~~-------~ 127 (379)
+. ..++..+.+++..+.. ...|.. ...+ +.+.+.. +++++++++|++++.+ +
T Consensus 79 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~ 157 (437)
T TIGR01989 79 SDRIQPFGRMQVWDGCSLA-LIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNS 157 (437)
T ss_pred hhcCCceeeEEEecCCCCc-eEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCC
Confidence 65 4577777777654431 122211 1111 3334444 6999999999999752 4
Q ss_pred CeEEEEEccCCceeEEEeecEEEecCCCChHHHHHh-hhcCCCCccceeeeeee-----------EEEeeCCCCCccccc
Q psy9141 128 GNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCL-MKQSMFNYSQTYIEHGY-----------MELCIPPSEDNEVWL 195 (379)
Q Consensus 128 ~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr~~l-~~~~~~~~~~~~i~~~~-----------~~~~~p~~~~~~~~~ 195 (379)
+++++++. +|++ ++||+||+|||++|.+|+.+ +...+.+|.+.++.... ++.+.+ .+++++
T Consensus 158 ~~v~v~~~-~g~~---i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~v~~v~~~~~~~~~~~~~~f~~---~g~~~~ 230 (437)
T TIGR01989 158 NWVHITLS-DGQV---LYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAVVATLKLEEATENDVAWQRFLP---TGPIAL 230 (437)
T ss_pred CceEEEEc-CCCE---EEeeEEEEecCCCChhHHHcCCCccceeeccEEEEEEEEcccCCCCCeEEEEECC---CCCEEE
Confidence 67888888 8887 99999999999999999998 77777888887652211 122222 344555
Q ss_pred cccceeeecCCCCeEEEEEecC--CCceeeecCCCCCCChhhhc--------------------ccc-cccc--------
Q psy9141 196 YKNRLLSSVPEVRKRISLRAQS--LKSLMNFPRADQGGDKRDCL--------------------LHE-GTSR-------- 244 (379)
Q Consensus 196 ~p~~~~~~~p~~~~~~~~~~~~--~~~~~~~p~~~~~~~~~~~l--------------------~~~-g~~~-------- 244 (379)
+|. ++....++|.... ...+..++.+++...+...+ ... ++..
T Consensus 231 lPl------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 304 (437)
T TIGR01989 231 LPL------PDNNSTLVWSTSPEEALRLLSLPPEDFVDALNAAFDLGYSDHPYSYLLDYAMEKLNEDIGFRTEGSKSCFQ 304 (437)
T ss_pred eEC------CCCCEEEEEeCCHHHHHHHHcCCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccc
Confidence 542 2222233332211 11111222222211111111 000 0000
Q ss_pred c--ccCCccc---CCCccccCCCCCccccCCcEEEe-eecccCCCcchhhhhHHHHHHHHHHhhcc------------cc
Q psy9141 245 I--LVPNMRL---SNHLDRDQPCKPLLDFKNPIKIQ-SHAVVNEFYKQESLIVASLCQEKIEKMFD------------NT 306 (379)
Q Consensus 245 ~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~liG-Ah~~~~P~~GQG~n~gl~Da~~L~~~l~~------------~~ 306 (379)
. ....... ..+.....++..|. ..|++++| |++++||+.|||+|+||+|+.+|+++|.+ .+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~~~~~~~L 383 (437)
T TIGR01989 305 VPPRVIGVVDKSRAAFPLGLGHADEYV-TKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVSVGADIGSISSL 383 (437)
T ss_pred cCchhheeecccceeEEecccchhhcc-CCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHhcCCChhHHHHH
Confidence 0 0000000 00011222334454 35899999 55555699999999999999999999863 34
Q ss_pred ccccccc-------hhhhhheeeeEEeeecccccchhhHHHHHHhh
Q psy9141 307 STYKSRH-------INFIHRSYHLYTVDIGVHKVTESSILNLLLRG 345 (379)
Q Consensus 307 ~~~~~~~-------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 345 (379)
.+|++++ +..++.+..+|+.+.++.+ .+-|+.+.-
T Consensus 384 ~~Y~~~R~~~~~~v~~~t~~l~~l~~~~~~~~~----~~R~~~l~~ 425 (437)
T TIGR01989 384 KPYERERYAKNVVLLGLVDKLHKLYATDFPPVV----ALRTFGLNL 425 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHH----HHHHHHHHH
Confidence 5677665 6667777778887777544 444555443
No 9
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=4.4e-34 Score=281.45 Aligned_cols=332 Identities=16% Similarity=0.138 Sum_probs=201.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCC----CCCCCCcccccccCHHHHHHHHHCCChHHHHhC-CCCc
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRN----SGLSEGKSINLALSVRGREALRRIGLEDKLLAH-GIPM 80 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~----~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~-~~~~ 80 (379)
.+||+||||||+|+++|+.|+++|++|+|+|+.+.... ....+.+++ ++++++.++|+++|+|+.+.+. ..+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~--~l~~~~~~~L~~lGl~~~l~~~~~~~~ 79 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVS--ALSAASQRILERLGAWDGIAARRASPY 79 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccch--hhhHHHHHHHHHCChhhhhhHhhCccc
Confidence 37999999999999999999999999999999873210 011223444 6899999999999999998754 5677
Q ss_pred eeeEEEecCCcEEEeeCCC----------CCcH-------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEE
Q psy9141 81 RARMIHGQNGKLREIPYDP----------VHNQ-------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKI 143 (379)
Q Consensus 81 ~~~~~~~~~g~~~~~~~~~----------~~~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~ 143 (379)
..+.+++.++.. ..+|.. ...+ .......++++++++++++++.+++++++++. +|++
T Consensus 80 ~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~-~g~~--- 154 (405)
T PRK05714 80 SEMQVWDGSGTG-QIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLA-DGRQ--- 154 (405)
T ss_pred eeEEEEcCCCCc-eEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEEC-CCCE---
Confidence 777787766532 111210 0111 11123358999999999999999999999888 8877
Q ss_pred EeecEEEecCCCChHHHHHh-hhcCCCCccceeeeeeeEEEeeCCCCCccccccccceeeecCCCCeEEEEEecCCC---
Q psy9141 144 TDNQLIIGADGAYSGVRKCL-MKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLK--- 219 (379)
Q Consensus 144 i~adlVV~AdG~~S~vr~~l-~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~--- 219 (379)
++||+||+|||.+|.+|+.+ +......|.+..+.. ....+. +...-. .....++. .+.++|...+
T Consensus 155 ~~a~~vVgAdG~~S~vR~~lg~~~~~~~~~~~~~~~---~~~~~~-~~~~~~-----~~~~~~~g--~~~~~P~~~~~~~ 223 (405)
T PRK05714 155 LRAPLVVAADGANSAVRRLAGCATREWDYLHHAIVT---SVRCSE-PHRATA-----WQRFTDDG--PLAFLPLERDGDE 223 (405)
T ss_pred EEeCEEEEecCCCchhHHhcCCCcccccCCceEEEE---EEEcCC-CCCCEE-----EEEcCCCC--CeEEeeCCCCCCC
Confidence 99999999999999999998 444444555544311 111111 000000 00011111 2333332211
Q ss_pred ce----eeecC-----------CCCCCChhhhcccccccccccCCcccCCCccccCCCCCccccCCcEEEe--eecccCC
Q psy9141 220 SL----MNFPR-----------ADQGGDKRDCLLHEGTSRILVPNMRLSNHLDRDQPCKPLLDFKNPIKIQ--SHAVVNE 282 (379)
Q Consensus 220 ~~----~~~p~-----------~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liG--Ah~~~~P 282 (379)
.+ +..+. +.+..++.+.|... ...+...-..........++..|. ..|++|+| ||+| ||
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~-~~rv~LlGDAAH~~-~P 299 (405)
T PRK05714 224 HWCSIVWSTTPEEAERLMALDDDAFCAALERAFEGR--LGEVLSADPRLCVPLRQRHAKRYV-EPGLALIGDAAHTI-HP 299 (405)
T ss_pred CeEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHH--hCCceecCCccEEecceeehhhhc-cCCEEEEEeccccC-CC
Confidence 11 11111 11111111111111 000000000000011222345555 35899999 5555 59
Q ss_pred CcchhhhhHHHHHHHHHHhhcc------------ccccccccc-------hhhhhheeeeEEeeecccccchhhHHHHHH
Q psy9141 283 FYKQESLIVASLCQEKIEKMFD------------NTSTYKSRH-------INFIHRSYHLYTVDIGVHKVTESSILNLLL 343 (379)
Q Consensus 283 ~~GQG~n~gl~Da~~L~~~l~~------------~~~~~~~~~-------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 343 (379)
+.|||+|+||+|+.+|+++|.+ .+..|++++ +..++.+.++|..+.+|. ...-|+.+
T Consensus 300 ~~GQG~n~al~DA~~La~~L~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~~~----~~~R~~~l 375 (405)
T PRK05714 300 LAGQGVNLGFLDAAVLAEVLLHAAERGERLADVRVLSRFERRRMPHNLALMAAMEGFERLFQADPLPL----RWLRNTGL 375 (405)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHH----HHHHHHHH
Confidence 9999999999999999999853 344677665 556666667888877654 46677777
Q ss_pred hhhhccCCCChhhHHHHHHHhccc
Q psy9141 344 RGMKKNVPMPNKKLDMILESANGL 367 (379)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~ 367 (379)
+-+.+..|+ | +.+++.|+|+
T Consensus 376 ~~~~~~~~~--k--~~~~~~~~g~ 395 (405)
T PRK05714 376 KLVDQMPEA--K--ALFVRQALGL 395 (405)
T ss_pred HHHhhCHHH--H--HHHHHHHhcC
Confidence 766653322 2 2456778886
No 10
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=1.9e-33 Score=277.78 Aligned_cols=335 Identities=15% Similarity=0.162 Sum_probs=199.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeE
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARM 84 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~ 84 (379)
.++||+||||||+|+++|+.|+++|++|+|+||++..... ..|+++ ++++++.++|+++|+|+++.+.+.+.....
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~--~~g~~~--~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~ 92 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAA--AKGQAY--ALSLLSARIFEGIGVWEKILPQIGKFRQIR 92 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccC--CCCcEE--EechHHHHHHHHCChhhhhHhhcCCccEEE
Confidence 3689999999999999999999999999999999865422 235655 689999999999999999988777777766
Q ss_pred EEecCCcE-EEeeCC---C-----CC-cH-------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeec
Q psy9141 85 IHGQNGKL-REIPYD---P-----VH-NQ-------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQ 147 (379)
Q Consensus 85 ~~~~~g~~-~~~~~~---~-----~~-~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~ad 147 (379)
+++..+.. ..+... . .. .+ ..+.+.+++++++++++++++.+++++++++.+++++.+ ++||
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~-i~ad 171 (415)
T PRK07364 93 LSDADYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQT-LQSK 171 (415)
T ss_pred EEeCCCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceE-Eeee
Confidence 66544321 111110 0 00 11 233445689999999999999988888888762333334 9999
Q ss_pred EEEecCCCChHHHHHh-hhcCCCCccceeeeeeeEEEeeCC-CCCccccccccceeeecCCCCeEEEEEecCCCc--eee
Q psy9141 148 LIIGADGAYSGVRKCL-MKQSMFNYSQTYIEHGYMELCIPP-SEDNEVWLYKNRLLSSVPEVRKRISLRAQSLKS--LMN 223 (379)
Q Consensus 148 lVV~AdG~~S~vr~~l-~~~~~~~~~~~~i~~~~~~~~~p~-~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~--~~~ 223 (379)
+||+|||.+|.+|+.+ .......+.+.++. ...+. .+..... ...+.+.. .+.++|...+. +++
T Consensus 172 lvIgADG~~S~vR~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-----~~~~~~~g--~~~~~p~~~~~~~~~~ 239 (415)
T PRK07364 172 LVVAADGARSPIRQAAGIKTKGWKYWQSCVT-----ATVKHEAPHNDIA-----YERFWPSG--PFAILPLPGNRCQIVW 239 (415)
T ss_pred EEEEeCCCCchhHHHhCCCceeecCCCEEEE-----EEEEccCCCCCEE-----EEEecCCC--CeEEeECCCCCEEEEE
Confidence 9999999999999988 44444444443321 11111 0000000 00111111 12222322222 111
Q ss_pred -ecC-----------CCCCCChhhhcccc-cccccccCCcccCCCccccCCCCCccccCCcEEEe-eecccCCCcchhhh
Q psy9141 224 -FPR-----------ADQGGDKRDCLLHE-GTSRILVPNMRLSNHLDRDQPCKPLLDFKNPIKIQ-SHAVVNEFYKQESL 289 (379)
Q Consensus 224 -~p~-----------~~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liG-Ah~~~~P~~GQG~n 289 (379)
.+. +++...+.+.+... +.... .... .........+.+|. ..|++++| |++.++|+.|||+|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~-~~rv~LvGDAAh~~~P~~GqG~n 315 (415)
T PRK07364 240 TAPHAQAKALLALPEAEFLAELQQRYGDQLGKLEL-LGDR--FLFPVQLMQSDRYV-QHRLALVGDAAHCCHPVGGQGLN 315 (415)
T ss_pred ECCHHHHHHHHCCCHHHHHHHHHHHhhhhhcCcee-cCCC--ceecchhhhhhhhc-CCcEEEEecccccCCCcccccHh
Confidence 111 11111111111110 00000 0000 00011122345565 35899999 44445599999999
Q ss_pred hHHHHHHHHHHhhcc------------ccccccccc-------hhhhhheeeeEEeeecccccchhhHHHHHHhhhhccC
Q psy9141 290 IVASLCQEKIEKMFD------------NTSTYKSRH-------INFIHRSYHLYTVDIGVHKVTESSILNLLLRGMKKNV 350 (379)
Q Consensus 290 ~gl~Da~~L~~~l~~------------~~~~~~~~~-------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (379)
+||+|+..|+++|.+ .++.|++++ +..++.+.++|..+.++. .++-|++++-+.+..
T Consensus 316 ~al~DA~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~----~~~r~~~~~~~~~~~ 391 (415)
T PRK07364 316 LGIRDAAALAQVLQTAHQRGEDIGSLAVLKRYERWRKRENWLILGFTDLLDRLFSNQWWPL----VVVRRLGLWLLRHVP 391 (415)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHH----HHHHHHHHHHHhhCH
Confidence 999999999999863 234566655 344555566776555433 467777777665533
Q ss_pred CCChhhHHHHHHHhcccc
Q psy9141 351 PMPNKKLDMILESANGLG 368 (379)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~ 368 (379)
++. +++...+||+.
T Consensus 392 ~~~----~~~~~~~~g~~ 405 (415)
T PRK07364 392 PLK----RLALRLMTGLK 405 (415)
T ss_pred HHH----HHHHHHHcCCC
Confidence 221 55677788864
No 11
>PRK06185 hypothetical protein; Provisional
Probab=100.00 E-value=2.8e-33 Score=275.90 Aligned_cols=337 Identities=16% Similarity=0.135 Sum_probs=201.2
Q ss_pred CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhC-CCC
Q psy9141 1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAH-GIP 79 (379)
Q Consensus 1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~-~~~ 79 (379)
|+...++||+||||||+|+++|+.|+++|++|+|+|+.+.... +.++. ++++.+.++|+++|+|+.+.+. ..+
T Consensus 1 ~~~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~----~~r~~--~l~~~s~~~L~~lG~~~~~~~~~~~~ 74 (407)
T PRK06185 1 MAEVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLR----DFRGD--TVHPSTLELMDELGLLERFLELPHQK 74 (407)
T ss_pred CCccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCc----cccCc--eeChhHHHHHHHcCChhHHhhcccce
Confidence 5555679999999999999999999999999999999874422 24444 6889999999999999998764 446
Q ss_pred ceeeEEEecCCcEEEeeCCC---------CCcH--------HHHhcCCCCeEEeCceEEEEEecCCeEE---EEEccCCc
Q psy9141 80 MRARMIHGQNGKLREIPYDP---------VHNQ--------VELEQYPDCNIYFQHKLINLDVNSGNVT---FYRTEDNS 139 (379)
Q Consensus 80 ~~~~~~~~~~g~~~~~~~~~---------~~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~v~---v~~~~~G~ 139 (379)
+..+.++..++.....++.. ...+ +.+.+.++++++++++|++++.+++.+. +... +|+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~-~g~ 153 (407)
T PRK06185 75 VRTLRFEIGGRTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTP-DGP 153 (407)
T ss_pred eeeEEEEECCeEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcC-CCc
Confidence 66676665433222222211 0111 2334457899999999999988877653 3344 554
Q ss_pred eeEEEeecEEEecCCCChHHHHHh-hhcCCCCccceeeeeee----------EEEeeCCCCCccccccccceeeecCCCC
Q psy9141 140 ETKITDNQLIIGADGAYSGVRKCL-MKQSMFNYSQTYIEHGY----------MELCIPPSEDNEVWLYKNRLLSSVPEVR 208 (379)
Q Consensus 140 ~~~~i~adlVV~AdG~~S~vr~~l-~~~~~~~~~~~~i~~~~----------~~~~~p~~~~~~~~~~p~~~~~~~p~~~ 208 (379)
.+ ++||+||+|||.+|.+|+.+ ++....+|.+..+.... ++.+.+ ++++++.|.. ..
T Consensus 154 -~~-i~a~~vI~AdG~~S~vr~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~llP~~-------~~ 221 (407)
T PRK06185 154 -GE-IRADLVVGADGRHSRVRALAGLEVREFGAPMDVLWFRLPREPDDPESLMGRFGP---GQGLIMIDRG-------DY 221 (407)
T ss_pred -EE-EEeCEEEECCCCchHHHHHcCCCccccCCCceeEEEecCCCCCCCcccceEecC---CcEEEEEcCC-------Ce
Confidence 23 99999999999999999988 55555566555331100 011111 2233333321 00
Q ss_pred eEEEEEecC--CCceeeecCCCCCCChhhhcccc-cccccccCCcccC-C---CccccCCCCCccccCCcEEEe-eeccc
Q psy9141 209 KRISLRAQS--LKSLMNFPRADQGGDKRDCLLHE-GTSRILVPNMRLS-N---HLDRDQPCKPLLDFKNPIKIQ-SHAVV 280 (379)
Q Consensus 209 ~~~~~~~~~--~~~~~~~p~~~~~~~~~~~l~~~-g~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~liG-Ah~~~ 280 (379)
..++|.-.. ...+...+.+ ...+.+... .......+..... . +......+..|+ ..|++++| |++.+
T Consensus 222 ~~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~~~~~-~~rv~LvGDAAh~~ 296 (407)
T PRK06185 222 WQCGYVIPKGGYAALRAAGLE----AFRERVAELAPELADRVAELKSWDDVKLLDVRVDRLRRWH-RPGLLCIGDAAHAM 296 (407)
T ss_pred EEEEEEecCCCchhhhhhhHH----HHHHHHHHhCccHHHHHhhcCCccccEEEEEecccccccc-CCCeEEEecccccc
Confidence 111111111 0000000000 011111110 0000001111100 0 011112334455 24899999 66666
Q ss_pred CCCcchhhhhHHHHHHHHHHhhcc----------ccccccccc-------hhhhhheeeeEEeee--cccccchhhHHHH
Q psy9141 281 NEFYKQESLIVASLCQEKIEKMFD----------NTSTYKSRH-------INFIHRSYHLYTVDI--GVHKVTESSILNL 341 (379)
Q Consensus 281 ~P~~GQG~n~gl~Da~~L~~~l~~----------~~~~~~~~~-------~~~~~~~~~~~t~~~--~~~~~~~~~~~~~ 341 (379)
||++|||+|+||+|+..|++.|.+ .+..|++++ +.+++.+.++|+++. +|.+.- -|+
T Consensus 297 ~P~~GqG~nlgl~Da~~La~~l~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----R~~ 372 (407)
T PRK06185 297 SPVGGVGINLAIQDAVAAANILAEPLRRGRVSDRDLAAVQRRREFPTRVTQALQRRIQRRLLAPALAGRGPLG----PPL 372 (407)
T ss_pred CcccccchhHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccccccCccccC----Cch
Confidence 799999999999999999998864 233576665 677888888999887 776644 456
Q ss_pred HHhhhhccCCCChhhHHHHHHHhccccch
Q psy9141 342 LLRGMKKNVPMPNKKLDMILESANGLGVL 370 (379)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (379)
.|.-+.+..| |++++-.-|+.|.-
T Consensus 373 ~l~~~~~~~~-----~k~~~~~~~~~~~~ 396 (407)
T PRK06185 373 LLRLLNRLPW-----LRRLPARLVGLGVR 396 (407)
T ss_pred HHHHHHhChh-----HHHhhHHheEecCC
Confidence 6655555433 44555555666543
No 12
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=100.00 E-value=1.1e-32 Score=270.19 Aligned_cols=337 Identities=17% Similarity=0.164 Sum_probs=199.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCC--CCCCCcccccccCHHHHHHHHHCCChHHHHhC-CCCce
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNS--GLSEGKSINLALSVRGREALRRIGLEDKLLAH-GIPMR 81 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~--~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~-~~~~~ 81 (379)
+++||+||||||+|+++|+.|++.|++|+|||+.+..... ..++.+.. ++++++.++|+.+|+|+.+... ..++.
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~--~l~~~~~~~l~~lGl~~~~~~~~~~~~~ 81 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRIS--AISAASVALLKGLGVWDAVQAMRSHPYR 81 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEE--eccHHHHHHHHHcCChhhhhhhhCcccc
Confidence 5689999999999999999999999999999998643211 11233443 6899999999999999988753 34444
Q ss_pred eeEEEecCCcEEEee---CC-----CCCcH--------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEe
Q psy9141 82 ARMIHGQNGKLREIP---YD-----PVHNQ--------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITD 145 (379)
Q Consensus 82 ~~~~~~~~g~~~~~~---~~-----~~~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~ 145 (379)
....+...+....+. .. +...+ +.+.+.++++++++++|++++.+++++.+++. +|++ ++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~-~g~~---~~ 157 (391)
T PRK08020 82 RLETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLA-DGEE---IQ 157 (391)
T ss_pred eEEEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEEC-CCCE---EE
Confidence 444433222111111 00 00111 23344569999999999999988888888888 8876 99
Q ss_pred ecEEEecCCCChHHHHHh-hhcCCCCccceeeeeeeEEEeeCCC--------CCccccccccceeeecCCCCeEEEEEec
Q psy9141 146 NQLIIGADGAYSGVRKCL-MKQSMFNYSQTYIEHGYMELCIPPS--------EDNEVWLYKNRLLSSVPEVRKRISLRAQ 216 (379)
Q Consensus 146 adlVV~AdG~~S~vr~~l-~~~~~~~~~~~~i~~~~~~~~~p~~--------~~~~~~~~p~~~~~~~p~~~~~~~~~~~ 216 (379)
||+||+|||.+|.+|+.+ ++.....|.+..+.... ....++. +.++.++.|. ++.+..++|+..
T Consensus 158 a~~vI~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~p~------~~~~~~~v~~~~ 230 (391)
T PRK08020 158 AKLVIGADGANSQVRQMAGIGVHGWQYRQSCMLISV-KCENPPGDSTWQQFTPSGPRAFLPL------FDNWASLVWYDS 230 (391)
T ss_pred eCEEEEeCCCCchhHHHcCCCccccCCCceEEEEEE-EecCCCCCEEEEEEcCCCCEEEeEC------CCCcEEEEEECC
Confidence 999999999999999998 56556666665432111 1111110 0122222221 122223333321
Q ss_pred C--CCceeeecCCCCCCChhhhcccc-cccccccCCcccCCCccccCCCCCccccCCcEEEe-eecccCCCcchhhhhHH
Q psy9141 217 S--LKSLMNFPRADQGGDKRDCLLHE-GTSRILVPNMRLSNHLDRDQPCKPLLDFKNPIKIQ-SHAVVNEFYKQESLIVA 292 (379)
Q Consensus 217 ~--~~~~~~~p~~~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liG-Ah~~~~P~~GQG~n~gl 292 (379)
. ...+...+.+.+...+...+... +.... .....+.....++..|. ..|++|+| |++.+||+.|||+|+||
T Consensus 231 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~pl~~~~~~~~~-~~rv~LvGDAAH~~~P~~GqG~n~al 305 (391)
T PRK08020 231 PARIRQLQAMSMAQLQQEIAAHFPARLGAVTP----VAAGAFPLTRRHALQYV-QPGLALVGDAAHTINPLAGQGVNLGY 305 (391)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhhhhccceEe----ccccEeecceeehhhhc-cCcEEEEechhhccCCcccchhHHHH
Confidence 1 01111111111111111111100 00000 00000011122344555 35899999 44444599999999999
Q ss_pred HHHHHHHHhhcc------------ccccccccc-------hhhhhheeeeEEeeecccccchhhHHHHHHhhhhccCCCC
Q psy9141 293 SLCQEKIEKMFD------------NTSTYKSRH-------INFIHRSYHLYTVDIGVHKVTESSILNLLLRGMKKNVPMP 353 (379)
Q Consensus 293 ~Da~~L~~~l~~------------~~~~~~~~~-------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (379)
+|+.+|+++|.+ .+.+|++++ +..++.++++|+.+.+|. ..+-|+.+.-+.+..+.
T Consensus 306 ~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~----~~~R~~~l~~~~~~~~~- 380 (391)
T PRK08020 306 RDVDALLDVLVNARSYGEAWASEAVLKRYQRRRMADNLLMQSGMDLFYAGFSNNLPPL----RFARNLGLMAAQRAGVL- 380 (391)
T ss_pred HHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHH----HHHHHHHHHHHhcCHHH-
Confidence 999999999874 233477665 456666778898877643 46677777755544332
Q ss_pred hhhHHHHHHHhccc
Q psy9141 354 NKKLDMILESANGL 367 (379)
Q Consensus 354 ~~~~~~~~~~~~~~ 367 (379)
| +.++..|||+
T Consensus 381 -k--~~~~~~~~g~ 391 (391)
T PRK08020 381 -K--RQALKYALGL 391 (391)
T ss_pred -H--HHHHHHHcCC
Confidence 1 2345667764
No 13
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=100.00 E-value=8.5e-32 Score=274.18 Aligned_cols=310 Identities=17% Similarity=0.182 Sum_probs=190.3
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRAR 83 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~ 83 (379)
+..+||+||||||+|+++|+.|++.|++|+||||.+.+... ++++ .++++++++|+++|+++++.+.+.+....
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~----~ra~--~l~~~~~~~L~~lGl~~~l~~~~~~~~~~ 81 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDL----PRAV--GIDDEALRVLQAIGLADEVLPHTTPNHGM 81 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCC----Ccee--eeCHHHHHHHHHcCChhHHHhhcccCCce
Confidence 45789999999999999999999999999999999876543 5665 68999999999999999998877777777
Q ss_pred EEEecCCcE-EEee------CCCC----CcH--------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEcc-CCceeEE
Q psy9141 84 MIHGQNGKL-REIP------YDPV----HNQ--------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTE-DNSETKI 143 (379)
Q Consensus 84 ~~~~~~g~~-~~~~------~~~~----~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~-~G~~~~~ 143 (379)
.+++.++.. ..++ +++. ..+ +.+.+.++++|+++++|++++++++++++++.+ +|++.+
T Consensus 82 ~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~- 160 (538)
T PRK06183 82 RFLDAKGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRET- 160 (538)
T ss_pred EEEcCCCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEE-
Confidence 777666543 2222 1111 112 233445799999999999999999998887752 465455
Q ss_pred EeecEEEecCCCChHHHHHh-hhcCCCCccceeeeeeeEEEeeCCCCCccccccccceeeecCCCCeEEEEEecCCCce-
Q psy9141 144 TDNQLIIGADGAYSGVRKCL-MKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLKSL- 221 (379)
Q Consensus 144 i~adlVV~AdG~~S~vr~~l-~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~- 221 (379)
++||+||+|||.+|.+|+.+ +......+.+.++.. ......... ..+.....+.|.. .+.+.+...+..
T Consensus 161 i~ad~vVgADG~~S~vR~~lg~~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~~~~~~~~--~~~~~p~~~~~~r 231 (538)
T PRK06183 161 VRARYVVGCDGANSFVRRTLGVPFEDLTFPERWLVV---DVLIANDPL----GGPHTYQYCDPAR--PYTSVRLPHGRRR 231 (538)
T ss_pred EEEEEEEecCCCchhHHHHcCCeeeCCCccceEEEE---EEecccCcc----CCCceEEEECCCC--CEEEEEcCCCeEE
Confidence 99999999999999999998 555555555544311 111111000 0011111112222 233333332221
Q ss_pred --eee-cCCCCCC-----ChhhhcccccccccccCCc-ccCCCccccCCCCCccccCCcEEEe-eecccCCCcchhhhhH
Q psy9141 222 --MNF-PRADQGG-----DKRDCLLHEGTSRILVPNM-RLSNHLDRDQPCKPLLDFKNPIKIQ-SHAVVNEFYKQESLIV 291 (379)
Q Consensus 222 --~~~-p~~~~~~-----~~~~~l~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~liG-Ah~~~~P~~GQG~n~g 291 (379)
+.+ +.+.... .+.+.+..... ......+ ....+......+..|. ..|++|+| |++.++|+.|||+|+|
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~-~gRv~L~GDAAH~~~P~~GQG~n~g 309 (538)
T PRK06183 232 WEFMLLPGETEEQLASPENVWRLLAPWGP-TPDDAELIRHAVYTFHARVADRWR-SGRVLLAGDAAHLMPPFAGQGMNSG 309 (538)
T ss_pred EEEEeCCCCChhhcCCHHHHHHHHHhhCC-CCcceEEEEEEeeeEccEEhhhhc-cCCEEEEechhhcCCCccccchhhh
Confidence 111 2221110 01111111000 0000000 0010111112234555 35899999 4444459999999999
Q ss_pred HHHHHHHHHhhcc---------ccccccccc-------hhhhhheeeeEEeeeccc
Q psy9141 292 ASLCQEKIEKMFD---------NTSTYKSRH-------INFIHRSYHLYTVDIGVH 331 (379)
Q Consensus 292 l~Da~~L~~~l~~---------~~~~~~~~~-------~~~~~~~~~~~t~~~~~~ 331 (379)
++||.+|+++|.. .+.+|++++ +..++.+.++|+...+..
T Consensus 310 i~DA~~La~kLa~~~~g~~~~~~L~~Ye~eR~p~~~~~~~~s~~~~~~~~~~~~~~ 365 (538)
T PRK06183 310 IRDAANLAWKLAAVLRGRAGDALLDTYEQERRPHARAMIDLAVRLGRVICPTDRLA 365 (538)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHH
Confidence 9999999998863 445688776 445555555776655543
No 14
>KOG2614|consensus
Probab=100.00 E-value=7e-32 Score=253.48 Aligned_cols=285 Identities=29% Similarity=0.404 Sum_probs=190.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE-
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI- 85 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~- 85 (379)
.+|+|||||++||++|++|+|.|++|+|+|++..++.. |++|+++++ ++++|+.+|+-+.+.+.+.|+.+..+
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~----g~si~L~~n--g~~aLkai~~~e~i~~~gip~~~~v~~ 76 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGE----GTSINLALN--GWRALKAIGLKEQIREQGIPLGGRVLI 76 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccC----Ccceeehhh--HHHHHHHcccHHHHHHhcCcccceeee
Confidence 48999999999999999999999999999998887765 888865544 99999999999999999999987744
Q ss_pred EecCCc-EEEeeCCCCC------cH------HHHhcCCCCeEEeCc------eEEEEEecCCeEEEEEccCCceeEEEee
Q psy9141 86 HGQNGK-LREIPYDPVH------NQ------VELEQYPDCNIYFQH------KLINLDVNSGNVTFYRTEDNSETKITDN 146 (379)
Q Consensus 86 ~~~~g~-~~~~~~~~~~------~~------~~~~~~~gv~i~~~~------~v~~i~~~~~~v~v~~~~~G~~~~~i~a 146 (379)
+...|+ ...++|.... .+ ....+.+--.|+++. ....++..+....+.+. +|.+ +++
T Consensus 77 ~~~sg~~~~~~~~~~~~~~i~r~~~r~ll~~lL~~a~~~~~ikf~~~~~~~~~~~~~~~~~~~~~v~l~-~g~~---~~~ 152 (420)
T KOG2614|consen 77 HGDSGKEVSRILYGEPDEYILRINRRNLLQELLAEALPTGTIKFHSNLSCTSKDVEIETLGKKLVVHLS-DGTT---VKG 152 (420)
T ss_pred ecCCCCeeEecccCCchHHHHHHHHHHHHHHHHHhhcCCCeeecccccccccccceeeecccccceecC-CCcE---EEe
Confidence 444555 3566665542 11 122233444455553 44445555556677888 8888 999
Q ss_pred cEEEecCCCChHHHHHhhhc-CCCCccceeeeeeeEEEeeCCCCCccccccccceeeecCCCCeEEEEEecC--CCceee
Q psy9141 147 QLIIGADGAYSGVRKCLMKQ-SMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQS--LKSLMN 223 (379)
Q Consensus 147 dlVV~AdG~~S~vr~~l~~~-~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~--~~~~~~ 223 (379)
|++|||||++|.||+++... +..++.+.+.+++|.+...|. ..+.+++.++.++.|+... ...+++... .-....
T Consensus 153 dlligCDGa~S~Vr~~l~~~~p~~~~~~ayrg~~~~~~~~~~-~~~vf~~~~~~~~~~~~~~-~~~~~y~~~~k~~t~t~ 230 (420)
T KOG2614|consen 153 DLLIGCDGAYSKVRKWLGFKEPRYDGSQAYRGLGFIPNGIPF-GKKVFAIYGNGLHSWPRPG-FHLIAYWFLDKSLTSTD 230 (420)
T ss_pred eEEEEcCchHHHHHHHhcccCCcceeEEEEeeeeeccCCCCc-ccceecccCCeEEEcccCC-ceEEEEEeecCCccccc
Confidence 99999999999999999544 777777877777777665554 4577889999998886443 233333322 222223
Q ss_pred ecCCCCCCChhhh------cccccccccccCCcccC---CCccccCCCCCccccC----CcEEEe--eecccCCCcchhh
Q psy9141 224 FPRADQGGDKRDC------LLHEGTSRILVPNMRLS---NHLDRDQPCKPLLDFK----NPIKIQ--SHAVVNEFYKQES 288 (379)
Q Consensus 224 ~p~~~~~~~~~~~------l~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~----~~~liG--Ah~~~~P~~GQG~ 288 (379)
++.....+..... +..+ .+..+...+... .......+..+.+..+ |++|+| ||+|. |++|||+
T Consensus 231 ~~~~~e~~~l~~~~~~v~~~~~e-n~~d~i~~~~~e~i~~t~l~~r~p~~~i~~~~s~~~vvL~GDAaHaM~-Pf~GQG~ 308 (420)
T KOG2614|consen 231 FAPFDEPEKLKKTSLEVVDFFPE-NFPDIIELTGEESIVRTPLADRPPWPLISVKCSPGNVVLLGDAAHAMT-PFLGQGG 308 (420)
T ss_pred ccCcCCHHHHhhhHHHHHHHhHH-hHHHHHHhcChHHhhhchhhhcCCcCeeeeccCCCeEEEecccccccC-Ccccccc
Confidence 3322222221111 0000 010111111111 0012223334444332 799999 99999 9999999
Q ss_pred hhHHHHHHHHHHhhccc
Q psy9141 289 LIVASLCQEKIEKMFDN 305 (379)
Q Consensus 289 n~gl~Da~~L~~~l~~~ 305 (379)
|.|+|||..|+++|.+.
T Consensus 309 n~a~ED~~VLa~~L~~~ 325 (420)
T KOG2614|consen 309 NCAFEDCVVLAECLDEA 325 (420)
T ss_pred cchHHHHHHHHHHHHHh
Confidence 99999999999999873
No 15
>PRK07588 hypothetical protein; Provisional
Probab=99.98 E-value=1.7e-31 Score=261.95 Aligned_cols=317 Identities=14% Similarity=0.146 Sum_probs=187.0
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEEe
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIHG 87 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~ 87 (379)
||+||||||+|+++|+.|+++|++|+|+||.+..... |+++ ++++++.++|+++|+++++.+.+.++..+.+++
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~----g~~~--~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~ 75 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTG----GYMV--DFWGVGYEVAKRMGITDQLREAGYQIEHVRSVD 75 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCC----CeEE--eccCcHHHHHHHcCCHHHHHhccCCccceEEEc
Confidence 7999999999999999999999999999999765432 5554 678999999999999999988888888888887
Q ss_pred cCCcE-EEee-------CCCC---CcH----HH-H-hcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEE
Q psy9141 88 QNGKL-REIP-------YDPV---HNQ----VE-L-EQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLII 150 (379)
Q Consensus 88 ~~g~~-~~~~-------~~~~---~~~----~~-~-~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV 150 (379)
.+|.. ..++ ++.. ..+ .. . +...+++++++++|++++.++++++++++ +|++ +++|+||
T Consensus 76 ~~g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~-~g~~---~~~d~vI 151 (391)
T PRK07588 76 PTGRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHRDGVRVTFE-RGTP---RDFDLVI 151 (391)
T ss_pred CCCCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECCCeEEEEEC-CCCE---EEeCEEE
Confidence 66653 2222 1101 111 11 1 12346999999999999999999999998 9987 8999999
Q ss_pred ecCCCChHHHHHhhhcCCCCccceeeeeeeEEEeeCCCCCccccccccceeeecCCCCeEEEEEecCCCcee-ee--cCC
Q psy9141 151 GADGAYSGVRKCLMKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLKSLM-NF--PRA 227 (379)
Q Consensus 151 ~AdG~~S~vr~~l~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~-~~--p~~ 227 (379)
+|||.+|.+|+.+.+... .+ ..+..........+.. .+ ..+.....+.... ..+.++|...+..+ .+ +.+
T Consensus 152 gADG~~S~vR~~~~~~~~-~~-~~~~g~~~~~~~~~~~--~~--~~~~~~~~~~~~g-~~~~~~p~~~~~~~~~~~~~~~ 224 (391)
T PRK07588 152 GADGLHSHVRRLVFGPER-DF-EHYLGCKVAACVVDGY--RP--RDERTYVLYNEVG-RQVARVALRGDRTLFLFIFRAE 224 (391)
T ss_pred ECCCCCccchhhccCCcc-ce-EEEcCcEEEEEEcCCC--CC--CCCceEEEEeCCC-CEEEEEecCCCCeEEEEEEEcC
Confidence 999999999998632211 10 0111111111111100 00 0011111111111 23444444333321 11 111
Q ss_pred -CCCCC--------hhhhccccccc-ccccCCcccCCC----ccccCCCCCccccCCcEEEe--eecccCCCcchhhhhH
Q psy9141 228 -DQGGD--------KRDCLLHEGTS-RILVPNMRLSNH----LDRDQPCKPLLDFKNPIKIQ--SHAVVNEFYKQESLIV 291 (379)
Q Consensus 228 -~~~~~--------~~~~l~~~g~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~liG--Ah~~~~P~~GQG~n~g 291 (379)
..... +.+.+...++. ..+...+..... .....++..|. ..+++++| ||+|. |+.|||+|+|
T Consensus 225 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~-~grv~LiGDAAH~~~-P~~GqG~n~a 302 (391)
T PRK07588 225 HDNPPLTPAEEKQLLRDQFGDVGWETPDILAALDDVEDLYFDVVSQIRMDRWS-RGRVALVGDAAACPS-LLGGEGSGLA 302 (391)
T ss_pred CccccCCHHHHHHHHHHHhccCCccHHHHHHhhhcccchheeeeeeeccCccc-cCCEEEEEccccCCC-CccCCcHHHH
Confidence 11010 11111111110 000011110000 01112345565 45899999 55555 9999999999
Q ss_pred HHHHHHHHHhhcc-------ccccccccchhh-------hhheeeeEEeeecccccchhhHHHHHHhhhh
Q psy9141 292 ASLCQEKIEKMFD-------NTSTYKSRHINF-------IHRSYHLYTVDIGVHKVTESSILNLLLRGMK 347 (379)
Q Consensus 292 l~Da~~L~~~l~~-------~~~~~~~~~~~~-------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~ 347 (379)
|+|+..|+++|.+ .+..|++.+... ++.+..+|....++. ..+-|++++.+.
T Consensus 303 ieDa~~La~~L~~~~~~~~~al~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~----~~~R~~~~~~~~ 368 (391)
T PRK07588 303 ITEAYVLAGELARAGGDHRRAFDAYEKRLRPFIAGKQAAAAKFLSVFAPKTRFG----LYVRNIAMKIMN 368 (391)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCHHH----HHHHHHHHHHhc
Confidence 9999999999864 244577776333 333444665544432 245566666555
No 16
>PRK06834 hypothetical protein; Provisional
Probab=99.98 E-value=3.8e-31 Score=265.54 Aligned_cols=293 Identities=19% Similarity=0.153 Sum_probs=171.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRAR 83 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~ 83 (379)
|.++||+||||||+|+++|+.|+++|++|+||||.+.+... ..++. +++++++++|+++|+++++.+.+......
T Consensus 1 ~~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~---~~Ra~--~l~~~s~~~L~~lGl~~~l~~~~~~~~~~ 75 (488)
T PRK06834 1 MTEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELV---GSRAG--GLHARTLEVLDQRGIADRFLAQGQVAQVT 75 (488)
T ss_pred CCcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCC---Cccee--eECHHHHHHHHHcCcHHHHHhcCCccccc
Confidence 34689999999999999999999999999999999865321 13443 68999999999999999998765443211
Q ss_pred EEE----ecCCcEEEeeCCCCCcH-------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEec
Q psy9141 84 MIH----GQNGKLREIPYDPVHNQ-------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGA 152 (379)
Q Consensus 84 ~~~----~~~g~~~~~~~~~~~~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~A 152 (379)
.+. +........++.....| ....+..+++++++++|++++++++++++++. +|++ ++||+||+|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~-~g~~---i~a~~vVgA 151 (488)
T PRK06834 76 GFAATRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELS-DGRT---LRAQYLVGC 151 (488)
T ss_pred eeeeEecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEEC-CCCE---EEeCEEEEe
Confidence 110 10000011122222222 12223358999999999999999999999887 8876 999999999
Q ss_pred CCCChHHHHHh-hhcCCCCccceeeeeeeEEEeeCCCCCccccccccceeeecC---CCCeEEEEEecCCCceeeecCCC
Q psy9141 153 DGAYSGVRKCL-MKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVP---EVRKRISLRAQSLKSLMNFPRAD 228 (379)
Q Consensus 153 dG~~S~vr~~l-~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p---~~~~~~~~~~~~~~~~~~~p~~~ 228 (379)
||++|.+|+.+ +.+++.+|.+.++. .++..+..+.......+.......| +....+++.... .. ...+.
T Consensus 152 DG~~S~vR~~lgi~~~g~~~~~~~~~---~dv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~ 224 (488)
T PRK06834 152 DGGRSLVRKAAGIDFPGWDPTTSYLI---AEVEMTEEPEWGVHRDALGIHAFGRLEDEGPVRVMVTEKQ-VG---ATGEP 224 (488)
T ss_pred cCCCCCcHhhcCCCCCCCCcceEEEE---EEEEecCCCCcceeeCCCceEEEeccCCCCeEEEEEecCC-CC---CCCCC
Confidence 99999999998 67777777665441 2222221000001111111111111 111112221100 00 00000
Q ss_pred CCCChhhhcccc-cc-cccccCCcccCCCccccCCCCCccccCCcEEEe-eecccCCCcchhhhhHHHHHHHHHHhhcc-
Q psy9141 229 QGGDKRDCLLHE-GT-SRILVPNMRLSNHLDRDQPCKPLLDFKNPIKIQ-SHAVVNEFYKQESLIVASLCQEKIEKMFD- 304 (379)
Q Consensus 229 ~~~~~~~~l~~~-g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liG-Ah~~~~P~~GQG~n~gl~Da~~L~~~l~~- 304 (379)
..++..+.+... +. ....... ....+......+..|. ..|++|+| |+++++|+.|||||+||+||.+|+++|..
T Consensus 225 ~~~~~~~~l~~~~g~~~~~~~~~-~~~~~~~~~r~a~~~~-~gRV~LaGDAAH~~~P~gGQG~N~gi~DA~nLawkLa~v 302 (488)
T PRK06834 225 TLDDLREALIAVYGTDYGIHSPT-WISRFTDMARQAASYR-DGRVLLAGDAAHVHSPVGGQGLNTGVQDAVNLGWKLAQV 302 (488)
T ss_pred CHHHHHHHHHHhhCCCCccccce-eEEeccccceeccccc-CCcEEEEeeccccCCccccccccccHHHHHHHHHHHHHH
Confidence 001111111111 00 0000000 0010111223345555 35899999 55555699999999999999999888865
Q ss_pred --------ccccccccch
Q psy9141 305 --------NTSTYKSRHI 314 (379)
Q Consensus 305 --------~~~~~~~~~~ 314 (379)
.|.+|++++.
T Consensus 303 l~g~~~~~lLd~Ye~eRr 320 (488)
T PRK06834 303 VKGTSPESLLDTYHAERH 320 (488)
T ss_pred HcCCCcHHHHHHHHHHHH
Confidence 4446887763
No 17
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.98 E-value=1.6e-31 Score=262.88 Aligned_cols=332 Identities=15% Similarity=0.129 Sum_probs=198.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCC--CcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeE
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQ--YEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARM 84 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G--~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~ 84 (379)
+||+||||||+|+++|+.|+++| ++|+|+||.+.... ..+++++ ++++++.++|+++|+|+.+...+.+.....
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~--~~~~~~~--~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~ 77 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAW--SRDPRAS--AIAAAARRMLEALGVWDEIAPEAQPITDMV 77 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccC--CCCcceE--EecHHHHHHHHHCCChhhhhhhcCcccEEE
Confidence 79999999999999999999995 99999999975432 2346665 789999999999999999988888887777
Q ss_pred EEecCCcE----EEeeC------CC----CCcH-------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEE
Q psy9141 85 IHGQNGKL----REIPY------DP----VHNQ-------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKI 143 (379)
Q Consensus 85 ~~~~~g~~----~~~~~------~~----~~~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~ 143 (379)
+++..+.. ....+ .. ...+ .......+++++++++|++++.+++.+.+++. +|++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~-~g~~--- 153 (403)
T PRK07333 78 ITDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLS-DGSV--- 153 (403)
T ss_pred EEeCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEEC-CCCE---
Confidence 76643211 01111 11 1111 12223358999999999999998999999888 8877
Q ss_pred EeecEEEecCCCChHHHHHh-hhcCCCCccceeeeeeeEEEeeCCCCCccccccccceeeecCCCCeEEEEEecCCCce-
Q psy9141 144 TDNQLIIGADGAYSGVRKCL-MKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLKSL- 221 (379)
Q Consensus 144 i~adlVV~AdG~~S~vr~~l-~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~- 221 (379)
++||+||+|||.+|.+|+.+ +......|.+..+... .+...+. .... ...+.++. .+.+.|...+..
T Consensus 154 ~~ad~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~-~~~~~~~--~~~~------~~~~~~~g--~~~~~Pl~~~~~~ 222 (403)
T PRK07333 154 LEARLLVAADGARSKLRELAGIKTVGWDYGQSGIVCT-VEHERPH--GGRA------EEHFLPAG--PFAILPLKGNRSS 222 (403)
T ss_pred EEeCEEEEcCCCChHHHHHcCCCcccccCCCEEEEEE-EEcCCCC--CCEE------EEEeCCCC--ceEEeECCCCCeE
Confidence 99999999999999999988 4444455555543111 1111110 0000 00111222 122223322221
Q ss_pred eee--cCC-----------CCCCChhhhcccccccccccCCcccCCCccccCCCCCccccCCcEEEe-eecccCCCcchh
Q psy9141 222 MNF--PRA-----------DQGGDKRDCLLHEGTSRILVPNMRLSNHLDRDQPCKPLLDFKNPIKIQ-SHAVVNEFYKQE 287 (379)
Q Consensus 222 ~~~--p~~-----------~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liG-Ah~~~~P~~GQG 287 (379)
+.+ +.+ .+...+.+.+... ...+...-..........+...|. ..|++++| |++.++|+.|||
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~grv~LvGDAAH~~~P~~GqG 299 (403)
T PRK07333 223 LVWTERTADAERLVALDDLVFEAELEQRFGHR--LGELKVLGKRRAFPLGLTLARSFV-APRFALVGDAAHGIHPIAGQG 299 (403)
T ss_pred EEEECCHHHHHHHHCCCHHHHHHHHHHHhhhh--cCceEeccCccEeechhhhhhhcc-CCCEEEEechhhcCCCccccc
Confidence 111 100 0000111111110 000000000000011112334455 35899999 444556999999
Q ss_pred hhhHHHHHHHHHHhhcc------------ccccccccc-------hhhhhheeeeEEeeecccccchhhHHHHHHhhhhc
Q psy9141 288 SLIVASLCQEKIEKMFD------------NTSTYKSRH-------INFIHRSYHLYTVDIGVHKVTESSILNLLLRGMKK 348 (379)
Q Consensus 288 ~n~gl~Da~~L~~~l~~------------~~~~~~~~~-------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~ 348 (379)
+|+||+|+..|+++|.+ .++.|++++ +..++.+.++|..+.++.+ ..-|++++-+.+
T Consensus 300 ~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~~~~----~~r~~~~~~~~~ 375 (403)
T PRK07333 300 LNLGLKDVAALAEVVVEAARLGLDIGSLDVLERYQRWRRFDTVRMGVTTDVLNRLFSNDSTLLR----SVRDIGLGLVDR 375 (403)
T ss_pred hhhhHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchHHH----HHHHHHHHHHhc
Confidence 99999999999999863 234577654 3344555557766655443 455666666654
Q ss_pred cCCCChhhHHHHHHHhcccc
Q psy9141 349 NVPMPNKKLDMILESANGLG 368 (379)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~ 368 (379)
..++ -+.+.+.++|++
T Consensus 376 ~~~~----~~~~~~~~~g~~ 391 (403)
T PRK07333 376 LPKL----KSFFIRQAAGLT 391 (403)
T ss_pred CHHH----HHHHHHHHhCcC
Confidence 3222 235678888875
No 18
>PRK05868 hypothetical protein; Validated
Probab=99.97 E-value=2.3e-30 Score=252.02 Aligned_cols=273 Identities=15% Similarity=0.149 Sum_probs=173.0
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEEe
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIHG 87 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~ 87 (379)
||+||||||+|+++|+.|+++|++|+|||+.+..... |.++ .+.++++++|+++|+++.+.+.+.++....+++
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~----g~~i--~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~ 76 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPG----GQAI--DVRGPALDVLERMGLLAAAQEHKTRIRGASFVD 76 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC----ceee--eeCchHHHHHHhcCCHHHHHhhccCccceEEEe
Confidence 8999999999999999999999999999999876544 6665 578999999999999999987777888887877
Q ss_pred cCCcEEEee-----CCCCC-------cH----HHH--hcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEE
Q psy9141 88 QNGKLREIP-----YDPVH-------NQ----VEL--EQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLI 149 (379)
Q Consensus 88 ~~g~~~~~~-----~~~~~-------~~----~~~--~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlV 149 (379)
.+|...... +.... .+ ..+ +...+++++++++|++++.++++++++++ +|++ ++||+|
T Consensus 77 ~~g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~-dg~~---~~adlv 152 (372)
T PRK05868 77 RDGNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDSVRVTFE-RAAA---REFDLV 152 (372)
T ss_pred CCCCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCeEEEEEC-CCCe---EEeCEE
Confidence 666542211 11110 01 111 22468999999999999988889999999 9987 999999
Q ss_pred EecCCCChHHHHHhhhcCCC---CccceeeeeeeEEEeeCCCCCccccccccceeee-cCCCCeEEEEEecCCCc----e
Q psy9141 150 IGADGAYSGVRKCLMKQSMF---NYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSS-VPEVRKRISLRAQSLKS----L 221 (379)
Q Consensus 150 V~AdG~~S~vr~~l~~~~~~---~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~-~p~~~~~~~~~~~~~~~----~ 221 (379)
|+|||.+|.+|+.+.+.... .++... ..+..|.. ..+.....| +... ..+.+++...+. +
T Consensus 153 IgADG~~S~vR~~~~~~~~~~~~~~g~~~-----~~~~~~~~------~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~ 220 (372)
T PRK05868 153 IGADGLHSNVRRLVFGPEEQFVKRLGTHA-----AIFTVPNF------LELDYWQTWHYGDS-TMAGVYSARNNTEARAA 220 (372)
T ss_pred EECCCCCchHHHHhcCCcccceeecceEE-----EEEEcCCC------CCCCcceEEEecCC-cEEEEEecCCCCceEEE
Confidence 99999999999998432211 111111 11112210 001112222 1222 234455544322 1
Q ss_pred eeecCCCC----------CCChhhhccccccc-ccccCCcccCC---C-ccccCCCCCccccCCcEEEe--eecccCCCc
Q psy9141 222 MNFPRADQ----------GGDKRDCLLHEGTS-RILVPNMRLSN---H-LDRDQPCKPLLDFKNPIKIQ--SHAVVNEFY 284 (379)
Q Consensus 222 ~~~p~~~~----------~~~~~~~l~~~g~~-~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~liG--Ah~~~~P~~ 284 (379)
+.+...+. .+.+.+.|...+|. ..+...+.... + .....++..|+ ..|++|+| ||++. |+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~w~~~~l~~~~~~~~~~~~~~~~~~~~~~w~-~grv~LvGDAAH~~~-P~~ 298 (372)
T PRK05868 221 LAFMDTELRIDYRDTEAQFAELQRRMAEDGWVRAQLLHYMRSAPDFYFDEMSQILMDRWS-RGRVALVGDAGYCCS-PLS 298 (372)
T ss_pred EEEecCCcccccCChHHHHHHHHHHHhhCCCchHHHHhhcccCCceeeccceEEecCCCC-CCCeeeeecccccCC-Ccc
Confidence 22222110 01111222211222 11111111000 0 11223455676 45899999 77776 999
Q ss_pred chhhhhHHHHHHHHHHhhcc
Q psy9141 285 KQESLIVASLCQEKIEKMFD 304 (379)
Q Consensus 285 GQG~n~gl~Da~~L~~~l~~ 304 (379)
|||+|+||+||..|+++|..
T Consensus 299 GqGa~~AleDa~~La~~L~~ 318 (372)
T PRK05868 299 GQGTSVALLGAYILAGELKA 318 (372)
T ss_pred CccHHHHHHHHHHHHHHHHh
Confidence 99999999999999999964
No 19
>PRK06184 hypothetical protein; Provisional
Probab=99.97 E-value=1.9e-30 Score=262.31 Aligned_cols=290 Identities=17% Similarity=0.143 Sum_probs=175.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRAR 83 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~ 83 (379)
|+++||+||||||+||++|+.|+++|++|+||||.+.+... ++++ .++++++++|+++|+++++.+.+.+....
T Consensus 1 ~~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~----~ra~--~l~~~~~e~l~~lGl~~~l~~~~~~~~~~ 74 (502)
T PRK06184 1 YTTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPG----SRGK--GIQPRTQEVFDDLGVLDRVVAAGGLYPPM 74 (502)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcC----ccce--eecHHHHHHHHHcCcHHHHHhcCccccce
Confidence 45689999999999999999999999999999999866543 4554 57899999999999999998887777666
Q ss_pred EEEecCCcEEEee------------CC--CCCcH--------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEc--cCCc
Q psy9141 84 MIHGQNGKLREIP------------YD--PVHNQ--------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRT--EDNS 139 (379)
Q Consensus 84 ~~~~~~g~~~~~~------------~~--~~~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~--~~G~ 139 (379)
.++..++...... +. ....| +.+.+ .++++++++++++++++++++++++. .+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~-~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~ 153 (502)
T PRK06184 75 RIYRDDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAE-LGHRVEFGCELVGFEQDADGVTARVAGPAGEE 153 (502)
T ss_pred eEEeCCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHH-CCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeE
Confidence 6665444321111 11 11122 22333 48999999999999999888887762 1444
Q ss_pred eeEEEeecEEEecCCCChHHHHHh-hhcCCCCccc-eeeeeeeEEEeeCCCCCccccccccceeeecCCCCeEEEEEecC
Q psy9141 140 ETKITDNQLIIGADGAYSGVRKCL-MKQSMFNYSQ-TYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQS 217 (379)
Q Consensus 140 ~~~~i~adlVV~AdG~~S~vr~~l-~~~~~~~~~~-~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~ 217 (379)
+ ++||+||+|||++|.+|+++ +...+..+.+ .++. .+...+.. .+...+.+.+.....+.+.|..
T Consensus 154 ~---i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~---~~~~~~~~-------~~~~~~~~~~~~~~~~~~~p~~ 220 (502)
T PRK06184 154 T---VRARYLVGADGGRSFVRKALGIGFPGETLGIDRMLV---ADVSLTGL-------DRDAWHQWPDGDMGMIALCPLP 220 (502)
T ss_pred E---EEeCEEEECCCCchHHHHhCCCCcccCcCCCceEEE---EEEEeecC-------CCcceEEccCCCCcEEEEEEcc
Confidence 4 99999999999999999998 6666555544 3321 12211110 0111122222111234444443
Q ss_pred CCceeee----cCCCCCCChhhhccc----c-cccccccCCcc-cCCCccccCCCCCccccCCcEEEe-eecccCCCcch
Q psy9141 218 LKSLMNF----PRADQGGDKRDCLLH----E-GTSRILVPNMR-LSNHLDRDQPCKPLLDFKNPIKIQ-SHAVVNEFYKQ 286 (379)
Q Consensus 218 ~~~~~~~----p~~~~~~~~~~~l~~----~-g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~liG-Ah~~~~P~~GQ 286 (379)
.+..+.+ +.+.......+.+.+ . +.......... ...+......+..|. ..|+.|+| |++.++|+.||
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~gRv~L~GDAAH~~~P~~Gq 299 (502)
T PRK06184 221 GTDLFQIQAPLPPGGEPDLSADGLTALLAERTGRTDIRLHSVTWASAFRMNARLADRYR-VGRVFLAGDAAHVHPPAGGQ 299 (502)
T ss_pred CCCeEEEEEEcCCCccCCCCHHHHHHHHHHhcCCCCcceeeeeeeeccccceeEhhhhc-CCcEEEeccccccCCCcccc
Confidence 2322221 211111111111111 1 11000000000 000011112223444 35899999 44444599999
Q ss_pred hhhhHHHHHHHHHHhhcc--------ccccccccch
Q psy9141 287 ESLIVASLCQEKIEKMFD--------NTSTYKSRHI 314 (379)
Q Consensus 287 G~n~gl~Da~~L~~~l~~--------~~~~~~~~~~ 314 (379)
|||+||+||.+|+++|.. .+.+|++++.
T Consensus 300 G~n~gi~DA~~LawkLa~vl~g~~~~lL~~Ye~eR~ 335 (502)
T PRK06184 300 GLNTSVQDAYNLGWKLAAVLAGAPEALLDTYEEERR 335 (502)
T ss_pred cccchHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999999999999998863 4556777763
No 20
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.97 E-value=3.2e-30 Score=253.57 Aligned_cols=297 Identities=14% Similarity=0.148 Sum_probs=174.3
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH 86 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 86 (379)
-+|+||||||+||++|+.|+++|++|+|+||.+..... |+++ .++++++++|+++|+++++...+.......+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~----g~gi--~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~ 76 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEV----GAGL--QLAPNAMRHLERLGVADRLSGTGVTPKALYLM 76 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcC----Cccc--eeChhHHHHHHHCCChHHHhhcccCcceEEEe
Confidence 58999999999999999999999999999999866543 7776 68999999999999999998766555444444
Q ss_pred ecCC-cE-EEee--------CCCC---CcH--------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEc--cCCceeEE
Q psy9141 87 GQNG-KL-REIP--------YDPV---HNQ--------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRT--EDNSETKI 143 (379)
Q Consensus 87 ~~~g-~~-~~~~--------~~~~---~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~--~~G~~~~~ 143 (379)
+... .. .... +... ..+ +.+...++++++++++|++++.+++++++++. .++++
T Consensus 77 ~g~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~--- 153 (400)
T PRK06475 77 DGRKARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVET--- 153 (400)
T ss_pred cCCCcceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcE---
Confidence 3211 11 1100 0101 122 23334468999999999999988888887763 13344
Q ss_pred EeecEEEecCCCChHHHHHhhhcCCCCccceeeeeeeEEEe-eCCCCCcccc--ccccceeeecCCCCeEEEEEecCCCc
Q psy9141 144 TDNQLIIGADGAYSGVRKCLMKQSMFNYSQTYIEHGYMELC-IPPSEDNEVW--LYKNRLLSSVPEVRKRISLRAQSLKS 220 (379)
Q Consensus 144 i~adlVV~AdG~~S~vr~~l~~~~~~~~~~~~i~~~~~~~~-~p~~~~~~~~--~~p~~~~~~~p~~~~~~~~~~~~~~~ 220 (379)
++||+||+|||.+|.+|+++.. ....|............. .+. .... ..+.....|+... ..++.+|...+.
T Consensus 154 ~~adlvIgADG~~S~vR~~~~~-~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~-~~~~~~p~~~~~ 228 (400)
T PRK06475 154 VSAAYLIACDGVWSMLRAKAGF-SKARFSGHIAWRTTLAADALPA---SFLSAMPEHKAVSAWLGNK-AHFIAYPVKGGK 228 (400)
T ss_pred EecCEEEECCCccHhHHhhcCC-CCCCcCCceEEEEEeehhhcch---hhhhhcccCCceEEEEcCC-CEEEEEEccCCc
Confidence 8999999999999999999732 334554332211111110 111 0000 0111223333222 355666665444
Q ss_pred eeee---cCCC-----CCCC-hhhhcccc--cccccc---cCCcccC-CCccccCCCCCccccCCcEEEe--eecccCCC
Q psy9141 221 LMNF---PRAD-----QGGD-KRDCLLHE--GTSRIL---VPNMRLS-NHLDRDQPCKPLLDFKNPIKIQ--SHAVVNEF 283 (379)
Q Consensus 221 ~~~~---p~~~-----~~~~-~~~~l~~~--g~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~liG--Ah~~~~P~ 283 (379)
.+++ +... +... ..+.+... ++...+ ....... .......+..+|....|++||| ||+++ |+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~grvvLiGDAAH~~~-P~ 307 (400)
T PRK06475 229 FFNFVAITGGENPGEVWSKTGDKAHLKSIYADWNKPVLQILAAIDEWTYWPLFEMADAQFVGPDRTIFLGDASHAVT-PF 307 (400)
T ss_pred EEEEEEEEcCCCCcccCCCCCCHHHHHHHhcCCChHHHHHHhcCCceeECcCcccCCCcceecCCEEEEecccccCC-ch
Confidence 4322 1111 1000 01111110 111110 0111000 0011112223444345899999 66655 99
Q ss_pred cchhhhhHHHHHHHHHHhhcc-----ccccccccchhhhh
Q psy9141 284 YKQESLIVASLCQEKIEKMFD-----NTSTYKSRHINFIH 318 (379)
Q Consensus 284 ~GQG~n~gl~Da~~L~~~l~~-----~~~~~~~~~~~~~~ 318 (379)
.|||+|+|++||..|+++|.. .++.|++.+...++
T Consensus 308 ~GqG~n~aieDa~~La~~L~~~~~~~aL~~Ye~~R~~r~~ 347 (400)
T PRK06475 308 AAQGAAMAIEDAAALAEALDSDDQSAGLKRFDSVRKERIA 347 (400)
T ss_pred hhhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999852 45567766644443
No 21
>PRK07190 hypothetical protein; Provisional
Probab=99.97 E-value=1.5e-30 Score=260.97 Aligned_cols=293 Identities=13% Similarity=0.106 Sum_probs=176.3
Q ss_pred CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCc
Q psy9141 1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPM 80 (379)
Q Consensus 1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~ 80 (379)
|+ .+.+||+||||||+||++|+.|+++|++|+||||.+.+... +++. +++++++++|+.+|+++++...+.+.
T Consensus 1 m~-~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~----gra~--~l~~~tle~L~~lGl~~~l~~~~~~~ 73 (487)
T PRK07190 1 MS-TQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEV----GRAD--ALNARTLQLLELVDLFDELYPLGKPC 73 (487)
T ss_pred CC-CccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCccccc----ccce--EeCHHHHHHHHhcChHHHHHhhCccc
Confidence 55 45689999999999999999999999999999999866433 6665 68999999999999999998777666
Q ss_pred eeeEEEecCCcEEEe-------e-----CCCCCcH-------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCcee
Q psy9141 81 RARMIHGQNGKLREI-------P-----YDPVHNQ-------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSET 141 (379)
Q Consensus 81 ~~~~~~~~~g~~~~~-------~-----~~~~~~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~ 141 (379)
....++......... . +....+| .......|++++++++|++++.+++++++.+. +|++
T Consensus 74 ~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~-~g~~- 151 (487)
T PRK07190 74 NTSSVWANGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLS-NGER- 151 (487)
T ss_pred eeEEEecCCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEEC-CCcE-
Confidence 655444422111100 0 0011122 11223358999999999999999999888887 8876
Q ss_pred EEEeecEEEecCCCChHHHHHh-hhcCCCCccceeeeeeeEEEeeCCCCCccccccccceeeecCCCCeEEEEEecCCCc
Q psy9141 142 KITDNQLIIGADGAYSGVRKCL-MKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLKS 220 (379)
Q Consensus 142 ~~i~adlVV~AdG~~S~vr~~l-~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~ 220 (379)
++|++||+|||.+|.+|+.+ +++.+.++...++ ..+.....+ +.-.+.......+.. .+.+.|...+.
T Consensus 152 --v~a~~vVgADG~~S~vR~~lgi~f~g~~~~~~~~---~~d~~~~~~----~~~~~~~~~~~~~~g--~~~~~p~~~~~ 220 (487)
T PRK07190 152 --IQSRYVIGADGSRSFVRNHFNVPFEIIRPQIIWA---VIDGVIDTD----FPKVPEIIVFQAETS--DVAWIPREGEI 220 (487)
T ss_pred --EEeCEEEECCCCCHHHHHHcCCCccccccceeEE---EEEEEEccC----CCCCcceEEEEcCCC--CEEEEECCCCE
Confidence 99999999999999999998 6666555443322 112211100 000011111111111 23333333221
Q ss_pred --eee-ecCCCCCCC-hhhhcccc-cccccccCCc-ccCCCccccCCCCCccccCCcEEEe-eecccCCCcchhhhhHHH
Q psy9141 221 --LMN-FPRADQGGD-KRDCLLHE-GTSRILVPNM-RLSNHLDRDQPCKPLLDFKNPIKIQ-SHAVVNEFYKQESLIVAS 293 (379)
Q Consensus 221 --~~~-~p~~~~~~~-~~~~l~~~-g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~liG-Ah~~~~P~~GQG~n~gl~ 293 (379)
++. .+.+++..+ ..+.+... .......... ..+.+......+..|....|+.|+| |+++++|+.|||||+|++
T Consensus 221 ~r~~~~~~~~~~t~~~~~~~l~~~~~~~~~~~~~~~w~s~~~~~~r~a~~~r~~gRV~LaGDAAH~h~P~gGQGmN~giq 300 (487)
T PRK07190 221 DRFYVRMDTKDFTLEQAIAKINHAMQPHRLGFKEIVWFSQFSVKESVAEHFFIQDRIFLAGDACHIHSVNGGQGLNTGLA 300 (487)
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHhcCCCCCceEEEEEEEEeeeCcEehhhcCcCCcEEEEecccccCCCccccchhhhHH
Confidence 111 122222111 11111110 0000000000 0000111222333443235899999 555677999999999999
Q ss_pred HHHHHHHhhcc---------ccccccccc
Q psy9141 294 LCQEKIEKMFD---------NTSTYKSRH 313 (379)
Q Consensus 294 Da~~L~~~l~~---------~~~~~~~~~ 313 (379)
||.+|+++|.. .|.+|++++
T Consensus 301 DA~nL~wkLa~v~~g~a~~~lLdtY~~eR 329 (487)
T PRK07190 301 DAFNLIWKLNMVIHHGASPELLQSYEAER 329 (487)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 99999999864 445688776
No 22
>PRK06753 hypothetical protein; Provisional
Probab=99.97 E-value=9.3e-30 Score=247.93 Aligned_cols=315 Identities=14% Similarity=0.161 Sum_probs=192.5
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEEe
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIHG 87 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~ 87 (379)
||+||||||+|+++|+.|++.|++|+|+||++.+... |+++ .+++++.+.|+.+|+++.+...+.+.....+++
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~----g~gi--~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~ 75 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEV----GAGI--GIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLD 75 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccccc----ccce--eeChHHHHHHHhcChHHHHHhcCCcccceeEEc
Confidence 7999999999999999999999999999999877543 5665 689999999999999999887778888888887
Q ss_pred cCCcEE-EeeCCC-----CCcH-----HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCC
Q psy9141 88 QNGKLR-EIPYDP-----VHNQ-----VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAY 156 (379)
Q Consensus 88 ~~g~~~-~~~~~~-----~~~~-----~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~ 156 (379)
.+|... ..++.. ...+ .......+.+|+++++|++++.+++++++++. +|++ +++|+||+|||.+
T Consensus 76 ~~g~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~-~g~~---~~~~~vigadG~~ 151 (373)
T PRK06753 76 DKGTLLNKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFA-DGES---EAFDLCIGADGIH 151 (373)
T ss_pred CCCCEEeecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEEC-CCCE---EecCEEEECCCcc
Confidence 766542 222211 1122 12233346789999999999988889999988 8887 9999999999999
Q ss_pred hHHHHHhhhcCCCCccceeeeeeeEEEeeCCCCCccccccccceeeecCCCCeEEEEEecCCCceee---ecCCCC---C
Q psy9141 157 SGVRKCLMKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLKSLMN---FPRADQ---G 230 (379)
Q Consensus 157 S~vr~~l~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~---~p~~~~---~ 230 (379)
|.+|+.+.......+..... +....+... ....+.....+.++. .+.+.|...+...+ ++.++. .
T Consensus 152 S~vR~~~~~~~~~~~~g~~~----~~~~~~~~~---~~~~~~~~~~~~~~g--~~~~~p~~~~~~~~~~~~~~~~~~~~~ 222 (373)
T PRK06753 152 SKVRQSVNADSKVRYQGYTC----FRGLIDDID---LKLPDCAKEYWGTKG--RFGIVPLLNNQAYWFITINAKERDPKY 222 (373)
T ss_pred hHHHHHhCCCCCceEcceEE----EEEEecccc---ccCccceEEEEcCCC--EEEEEEcCCCeEEEEEEeccccCCccc
Confidence 99999984322222221111 111112100 000001111122221 33344444333222 111110 0
Q ss_pred C-----Chhhhcccc-cccccccCCcccCC----CccccCCCCCccccCCcEEEe--eecccCCCcchhhhhHHHHHHHH
Q psy9141 231 G-----DKRDCLLHE-GTSRILVPNMRLSN----HLDRDQPCKPLLDFKNPIKIQ--SHAVVNEFYKQESLIVASLCQEK 298 (379)
Q Consensus 231 ~-----~~~~~l~~~-g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~liG--Ah~~~~P~~GQG~n~gl~Da~~L 298 (379)
. .+.+.+... ...+.+........ ......++..|. ..++++|| ||+|. |+.|||+|+||+|+..|
T Consensus 223 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~rv~LiGDAAh~~~-P~~GqG~n~ai~Da~~L 300 (373)
T PRK06753 223 SSFGKPHLQAYFNHYPNEVREILDKQSETGILHHDIYDLKPLKSFV-YGRIVLLGDAAHATT-PNMGQGAGQAMEDAIVL 300 (373)
T ss_pred ccccHHHHHHHHhcCChHHHHHHHhCCcccceeecccccccccccc-CCCEEEEecccccCC-CCcCccHHHHHHHHHHH
Confidence 0 011111100 00000000000000 011123345565 35899999 66655 99999999999999999
Q ss_pred HHhhcc-----ccccccccc-------hhhhhheeeeEEeeecccccchhhHHHHHHhhhh
Q psy9141 299 IEKMFD-----NTSTYKSRH-------INFIHRSYHLYTVDIGVHKVTESSILNLLLRGMK 347 (379)
Q Consensus 299 ~~~l~~-----~~~~~~~~~-------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~ 347 (379)
+++|.+ .+..|++++ +..++.+.++|+.+.++. +..-|.+++.+-
T Consensus 301 ~~~L~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~----~~~r~~~l~~~~ 357 (373)
T PRK06753 301 ANCLNAYDFEKALQRYDKIRVKHTAKVIKRSRKIGKIAQIESKLL----VALRNRVMKRMP 357 (373)
T ss_pred HHHhhhccHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHhcCCchH----HHHHHHHHHhCC
Confidence 999853 345677665 445555556776655533 346777777663
No 23
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.97 E-value=4.2e-30 Score=264.89 Aligned_cols=303 Identities=15% Similarity=0.153 Sum_probs=179.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhC-CCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKN-QYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRAR 83 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~-G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~ 83 (379)
+++||+||||||+||++|+.|++. |++|+|||+.+.+... |+++ +++++++++|+++|+++++.+.+.++...
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~----grA~--gl~prtleiL~~lGl~d~l~~~g~~~~~~ 104 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLEL----GQAD--GIACRTMEMFQAFGFAERILKEAYWINET 104 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCC----Ceee--EEChHHHHHHHhccchHHHHhhcccccce
Confidence 478999999999999999999995 9999999999866544 6665 68999999999999999999888887777
Q ss_pred EEEecCCc----EE---E-e-------eCCC-CCcH--------HHHhcCC-CCeEEeCceEEEEEecCC---eEEEEEc
Q psy9141 84 MIHGQNGK----LR---E-I-------PYDP-VHNQ--------VELEQYP-DCNIYFQHKLINLDVNSG---NVTFYRT 135 (379)
Q Consensus 84 ~~~~~~g~----~~---~-~-------~~~~-~~~~--------~~~~~~~-gv~i~~~~~v~~i~~~~~---~v~v~~~ 135 (379)
.++..++. .. . . .+.. ..+| +.+.... ++++++++++++++.+++ .|++++.
T Consensus 105 ~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~ 184 (634)
T PRK08294 105 AFWKPDPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLR 184 (634)
T ss_pred EEEcCCCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEE
Confidence 77764321 00 0 0 0111 1123 2233322 368899999999987653 4777765
Q ss_pred c-----CCceeEEEeecEEEecCCCChHHHHHh-hhcCCCCccceeeeeeeEEEe----eCCCCCccccccccceeeecC
Q psy9141 136 E-----DNSETKITDNQLIIGADGAYSGVRKCL-MKQSMFNYSQTYIEHGYMELC----IPPSEDNEVWLYKNRLLSSVP 205 (379)
Q Consensus 136 ~-----~G~~~~~i~adlVV~AdG~~S~vr~~l-~~~~~~~~~~~~i~~~~~~~~----~p~~~~~~~~~~p~~~~~~~p 205 (379)
+ +|++.+ ++||+||+|||++|.+|+++ ++..+..+.+.+ +..++. .|. ... ......
T Consensus 185 ~~~~~~~g~~~t-v~A~~lVGaDGa~S~VR~~lgi~~~G~~~~~~~---~v~dv~~~~~~p~--~~~-------~~~~~~ 251 (634)
T PRK08294 185 RTDGEHEGEEET-VRAKYVVGCDGARSRVRKAIGRELRGDSANHAW---GVMDVLAVTDFPD--IRL-------KCAIQS 251 (634)
T ss_pred ECCCCCCCceEE-EEeCEEEECCCCchHHHHhcCCCccCCcccceE---EEEEEEEccCCCC--cce-------EEEEec
Confidence 1 354345 99999999999999999999 666655555443 222221 111 000 000011
Q ss_pred CCCeEEEEEecCCCceeee-------cCCCC---CCChhhhcccc-----cccccccCCcc-cCCCccccCC--------
Q psy9141 206 EVRKRISLRAQSLKSLMNF-------PRADQ---GGDKRDCLLHE-----GTSRILVPNMR-LSNHLDRDQP-------- 261 (379)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~-------p~~~~---~~~~~~~l~~~-----g~~~~~~~~~~-~~~~~~~~~~-------- 261 (379)
.....+.+.|...+.++.+ +.... .....+.+.+. +.+..-..... .+.+......
T Consensus 252 ~~~g~~~~~P~~~g~~~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~~p~~~~~~~v~w~s~y~i~~r~a~~f~~~~ 331 (634)
T PRK08294 252 ASEGSILLIPREGGYLVRLYVDLGEVPPDERVAVRNTTVEEVIAKAQRILHPYTLDVKEVAWWSVYEVGQRLTDRFDDVP 331 (634)
T ss_pred CCCceEEEEECCCCeEEEEEEecCcCCCccccccccCCHHHHHHHHHHhcCCCCCceeEEeEEecccccceehhhccccc
Confidence 1112445555544432221 10100 00011111111 00000000000 0000000011
Q ss_pred -CCCccccCCcEEEe-eecccCCCcchhhhhHHHHHHHHHHhhcc---------ccccccccc-------hhhhhheeee
Q psy9141 262 -CKPLLDFKNPIKIQ-SHAVVNEFYKQESLIVASLCQEKIEKMFD---------NTSTYKSRH-------INFIHRSYHL 323 (379)
Q Consensus 262 -~~~~~~~~~~~liG-Ah~~~~P~~GQG~n~gl~Da~~L~~~l~~---------~~~~~~~~~-------~~~~~~~~~~ 323 (379)
...|....|+.|+| |+++++|++|||||+||+|+.+|+++|.. .|.+|++++ +.+++...++
T Consensus 332 ~~~~~~r~gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~g~a~~~lL~tYe~ERrp~a~~li~~~~~~~~l 411 (634)
T PRK08294 332 AEEAGTRLPRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLSGRSPPELLHTYSAERQAIAQELIDFDREWSTM 411 (634)
T ss_pred ccccccccCCEEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222235899999 55556699999999999999999999864 455688776 4555555557
Q ss_pred EEe
Q psy9141 324 YTV 326 (379)
Q Consensus 324 ~t~ 326 (379)
|+.
T Consensus 412 ~~~ 414 (634)
T PRK08294 412 MAA 414 (634)
T ss_pred hcc
Confidence 754
No 24
>PRK07045 putative monooxygenase; Reviewed
Probab=99.97 E-value=5.5e-30 Score=250.91 Aligned_cols=162 Identities=22% Similarity=0.340 Sum_probs=118.4
Q ss_pred CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCC-C
Q psy9141 1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGI-P 79 (379)
Q Consensus 1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~-~ 79 (379)
|+ +.++||+||||||+|+++|+.|++.|++|+|+|+.+..... ++++ .+++++.++|+++|+++.+...+. .
T Consensus 1 ~~-~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~----~~~~--~l~~~~~~~L~~lGl~~~~~~~~~~~ 73 (388)
T PRK07045 1 MK-NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQ----NGAD--LLKPSGIGVVRAMGLLDDVFAAGGLR 73 (388)
T ss_pred CC-CceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCC----Cccc--ccCccHHHHHHHcCCHHHHHhccccc
Confidence 54 46789999999999999999999999999999999877543 3333 489999999999999999887653 3
Q ss_pred ceeeEEEecCCcE-EEeeCCC------C--CcH--------HHHhcCCCCeEEeCceEEEEEecCCe--EEEEEccCCce
Q psy9141 80 MRARMIHGQNGKL-REIPYDP------V--HNQ--------VELEQYPDCNIYFQHKLINLDVNSGN--VTFYRTEDNSE 140 (379)
Q Consensus 80 ~~~~~~~~~~g~~-~~~~~~~------~--~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~--v~v~~~~~G~~ 140 (379)
.....++. ++.. ...++.. . ..+ +.+...++++++++++|++++.++++ +.+++. +|++
T Consensus 74 ~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~-~g~~ 151 (388)
T PRK07045 74 RDAMRLYH-DKELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLS-DGER 151 (388)
T ss_pred ccceEEec-CCcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeC-CCCE
Confidence 33344433 3332 2222211 0 111 23345678999999999999987665 357787 8876
Q ss_pred eEEEeecEEEecCCCChHHHHHhh--hcCCCCccce
Q psy9141 141 TKITDNQLIIGADGAYSGVRKCLM--KQSMFNYSQT 174 (379)
Q Consensus 141 ~~~i~adlVV~AdG~~S~vr~~l~--~~~~~~~~~~ 174 (379)
+++|+||+|||.+|.+|+.+. +.....|.+.
T Consensus 152 ---~~~~~vIgADG~~S~vR~~~~~~~~~~~~~~~~ 184 (388)
T PRK07045 152 ---VAPTVLVGADGARSMIRDDVLRMPAERVPYATP 184 (388)
T ss_pred ---EECCEEEECCCCChHHHHHhhCCCcccCCCCcc
Confidence 999999999999999999763 3333344443
No 25
>PRK06126 hypothetical protein; Provisional
Probab=99.97 E-value=1.1e-29 Score=259.43 Aligned_cols=165 Identities=23% Similarity=0.329 Sum_probs=118.7
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCce
Q psy9141 2 KCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMR 81 (379)
Q Consensus 2 ~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~ 81 (379)
+++.++||+||||||+||++|+.|+++|++|+||||.+..... ++++ +++++++++|+++|+++++.+.+.+..
T Consensus 3 ~~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~----~ra~--~l~~r~~e~L~~lGl~~~l~~~g~~~~ 76 (545)
T PRK06126 3 ENTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFN----PKAN--TTSARSMEHFRRLGIADEVRSAGLPVD 76 (545)
T ss_pred CCCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCC----Cccc--cCCHHHHHHHHhcChHHHHHhhcCCcc
Confidence 3456799999999999999999999999999999998765433 5655 689999999999999999987765431
Q ss_pred ---ee-EEEecCCcE-EEeeC-----------------C-----CCCcH--------HHHhcCCCCeEEeCceEEEEEec
Q psy9141 82 ---AR-MIHGQNGKL-REIPY-----------------D-----PVHNQ--------VELEQYPDCNIYFQHKLINLDVN 126 (379)
Q Consensus 82 ---~~-~~~~~~g~~-~~~~~-----------------~-----~~~~~--------~~~~~~~gv~i~~~~~v~~i~~~ 126 (379)
.. ......|.. ..+.+ . ....+ +.+.+.++++|+++++|++++.+
T Consensus 77 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~ 156 (545)
T PRK06126 77 YPTDIAYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQD 156 (545)
T ss_pred ccCCceEEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEEC
Confidence 11 111112221 11110 0 00122 23334578999999999999999
Q ss_pred CCeEEEEEc--cCCceeEEEeecEEEecCCCChHHHHHh-hhcCCCCccc
Q psy9141 127 SGNVTFYRT--EDNSETKITDNQLIIGADGAYSGVRKCL-MKQSMFNYSQ 173 (379)
Q Consensus 127 ~~~v~v~~~--~~G~~~~~i~adlVV~AdG~~S~vr~~l-~~~~~~~~~~ 173 (379)
++++++++. .+|+..+ +++|+||+|||++|.+|+.+ +...+..+.+
T Consensus 157 ~~~v~v~~~~~~~g~~~~-i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~ 205 (545)
T PRK06126 157 ADGVTATVEDLDGGESLT-IRADYLVGCDGARSAVRRSLGISYEGTSGLQ 205 (545)
T ss_pred CCeEEEEEEECCCCcEEE-EEEEEEEecCCcchHHHHhcCCccccCCCcc
Confidence 888877653 1466556 99999999999999999998 5555444433
No 26
>PRK06996 hypothetical protein; Provisional
Probab=99.97 E-value=3.8e-31 Score=259.92 Aligned_cols=322 Identities=14% Similarity=0.116 Sum_probs=187.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCC----CcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCc
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQ----YEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPM 80 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G----~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~ 80 (379)
..+||+||||||+|+++|+.|+++| ++|+|+|+.+... ...+.+++ ++++.+.++|+++|+|+. .+.++
T Consensus 10 ~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~--~~~~~r~~--~l~~~~~~~L~~lg~~~~---~~~~~ 82 (398)
T PRK06996 10 PDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAA--SANDPRAI--ALSHGSRVLLETLGAWPA---DATPI 82 (398)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCc--CCCCceEE--EecHHHHHHHHhCCCchh---cCCcc
Confidence 4589999999999999999999997 4799999986443 12345666 789999999999999986 45566
Q ss_pred eeeEEEecC--CcEE----EeeCCC---CCcH--------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCc-eeE
Q psy9141 81 RARMIHGQN--GKLR----EIPYDP---VHNQ--------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNS-ETK 142 (379)
Q Consensus 81 ~~~~~~~~~--g~~~----~~~~~~---~~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~-~~~ 142 (379)
....+++.. +... ...+.. ...+ +.+. ..++++++++++++++.+++++++++. +|+ ..+
T Consensus 83 ~~~~~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~-~~g~~~~~~~~v~~~~~~~~~v~v~~~-~~~g~~~ 160 (398)
T PRK06996 83 EHIHVSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVR-GTPVRWLTSTTAHAPAQDADGVTLALG-TPQGART 160 (398)
T ss_pred cEEEEecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHH-hCCCEEEcCCeeeeeeecCCeEEEEEC-CCCcceE
Confidence 666665432 1110 001111 1111 2333 347999999999999999999999887 552 123
Q ss_pred EEeecEEEecCCC-ChHHHHHh-hhcCCCCccceeeeeeeEEEeeCCC--------CCccccccccceeeecCCCCeEEE
Q psy9141 143 ITDNQLIIGADGA-YSGVRKCL-MKQSMFNYSQTYIEHGYMELCIPPS--------EDNEVWLYKNRLLSSVPEVRKRIS 212 (379)
Q Consensus 143 ~i~adlVV~AdG~-~S~vr~~l-~~~~~~~~~~~~i~~~~~~~~~p~~--------~~~~~~~~p~~~~~~~p~~~~~~~ 212 (379)
++||+||+|||+ +|.+|+.+ +......|.+.++.. ......|.. +.++++++|..... .....++
T Consensus 161 -i~a~lvIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~G~~~~lp~~~~~---~~~~~~v 235 (398)
T PRK06996 161 -LRARIAVQAEGGLFHDQKADAGDSARRRDYGQTAIVG-TVTVSAPRPGWAWERFTHEGPLALLPLGGPR---QADYALV 235 (398)
T ss_pred -EeeeEEEECCCCCchHHHHHcCCCceeeecCCeEEEE-EEEccCCCCCEEEEEecCCCCeEEeECCCCC---CCcEEEE
Confidence 999999999997 57788877 556666777765421 111111110 12233333311000 0001111
Q ss_pred EEecC--CCceeeecCCCCCCChhhhcccc-cccccccCCcccCCCccccCCCCCccccCCcEEEe-eecccCCCcchhh
Q psy9141 213 LRAQS--LKSLMNFPRADQGGDKRDCLLHE-GTSRILVPNMRLSNHLDRDQPCKPLLDFKNPIKIQ-SHAVVNEFYKQES 288 (379)
Q Consensus 213 ~~~~~--~~~~~~~p~~~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liG-Ah~~~~P~~GQG~ 288 (379)
+.... ......++.+++...+.+.+... +.......... +.........|. ..|++++| |++.+||+.|||+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~-~grv~LiGDAAH~~~P~~GQG~ 311 (398)
T PRK06996 236 WCCAPDEAARRAALPDDAFLAELGAAFGTRMGRFTRIAGRHA---FPLGLNAARTLV-NGRIAAVGNAAQTLHPVAGQGL 311 (398)
T ss_pred EECCHHHHHHHHcCCHHHHHHHHHHHhccccCceEEecceEE---Eeeeccccccee-cCCEEEEEhhhccCCcccchhH
Confidence 11100 00011111111111111112111 00000000000 011122334555 35899999 4444459999999
Q ss_pred hhHHHHHHHHHHhhcc------ccccccccc-------hhhhhheeeeEEeeecccccchhhHHHHHHhhhhc
Q psy9141 289 LIVASLCQEKIEKMFD------NTSTYKSRH-------INFIHRSYHLYTVDIGVHKVTESSILNLLLRGMKK 348 (379)
Q Consensus 289 n~gl~Da~~L~~~l~~------~~~~~~~~~-------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~ 348 (379)
|+||+|+.+|+++|.+ .+.+|++++ +..++.+.++|+++.++. ..+-|+++.-+.+
T Consensus 312 n~ai~Da~~La~~L~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~l~~~~~~~~~~~----~~~R~~~l~~~~~ 380 (398)
T PRK06996 312 NLGLRDAHTLADALSDHGATPLALATFAARRALDRRVTIGATDLLPRLFTVDSRPL----AHLRGAALTALEF 380 (398)
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHH----HHHHhHHHHHHhh
Confidence 9999999999999964 345688776 466777777888776643 3556666654444
No 27
>PRK07236 hypothetical protein; Provisional
Probab=99.97 E-value=6.3e-30 Score=250.35 Aligned_cols=164 Identities=23% Similarity=0.363 Sum_probs=125.3
Q ss_pred CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCc
Q psy9141 1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPM 80 (379)
Q Consensus 1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~ 80 (379)
|..|+..+|+||||||+||++|+.|++.|++|+|+||.+.... ..|.++ .+++++.++|+++|+++.. ..+.+.
T Consensus 1 ~~~~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~---~~g~gi--~l~~~~~~~l~~lg~~~~~-~~~~~~ 74 (386)
T PRK07236 1 MTHMSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELD---GRGAGI--VLQPELLRALAEAGVALPA-DIGVPS 74 (386)
T ss_pred CCCCCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcC---CCCcee--EeCHHHHHHHHHcCCCccc-ccccCc
Confidence 6678889999999999999999999999999999999875421 225554 6899999999999998765 456666
Q ss_pred eeeEEEecCCcEEE-eeCCCC-CcH-----HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecC
Q psy9141 81 RARMIHGQNGKLRE-IPYDPV-HNQ-----VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGAD 153 (379)
Q Consensus 81 ~~~~~~~~~g~~~~-~~~~~~-~~~-----~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~Ad 153 (379)
....+++.+|.... .++... ... ......++++++++++|++++.+++++++++. +|++ ++||+||+||
T Consensus 75 ~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~-~g~~---~~ad~vIgAD 150 (386)
T PRK07236 75 RERIYLDRDGRVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFA-DGRR---ETADLLVGAD 150 (386)
T ss_pred cceEEEeCCCCEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEEC-CCCE---EEeCEEEECC
Confidence 66666666665321 122111 111 22334467889999999999999889999998 8987 9999999999
Q ss_pred CCChHHHHHhhhcCCCCccce
Q psy9141 154 GAYSGVRKCLMKQSMFNYSQT 174 (379)
Q Consensus 154 G~~S~vr~~l~~~~~~~~~~~ 174 (379)
|.+|.+|+++.+.....|...
T Consensus 151 G~~S~vR~~l~~~~~~~~~g~ 171 (386)
T PRK07236 151 GGRSTVRAQLLPDVRPTYAGY 171 (386)
T ss_pred CCCchHHHHhCCCCCCCcCCe
Confidence 999999999855444555543
No 28
>PRK08244 hypothetical protein; Provisional
Probab=99.97 E-value=5.5e-30 Score=258.48 Aligned_cols=293 Identities=18% Similarity=0.099 Sum_probs=173.1
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI 85 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~ 85 (379)
++||+||||||+||++|+.|++.|++|+||||.+.+... ++++ .++++++++|+++|+++++.+.+.++....+
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~----~ra~--~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~ 75 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPY----SKAL--TLHPRTLEILDMRGLLERFLEKGRKLPSGHF 75 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCC----ccee--EecHHHHHHHHhcCcHHHHHhhcccccceEE
Confidence 389999999999999999999999999999999876433 6766 6899999999999999999887766665555
Q ss_pred EecCCcEE------EeeCCCCCcH-------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEcc-CCceeEEEeecEEEe
Q psy9141 86 HGQNGKLR------EIPYDPVHNQ-------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTE-DNSETKITDNQLIIG 151 (379)
Q Consensus 86 ~~~~g~~~------~~~~~~~~~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~-~G~~~~~i~adlVV~ 151 (379)
....+... ..++.....| ....+..++++++++++++++.+++++++++.. +|+ .+ ++||+||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~-~~-i~a~~vVg 153 (493)
T PRK08244 76 AGLDTRLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGL-RT-LTSSYVVG 153 (493)
T ss_pred ecccccCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCcc-EE-EEeCEEEE
Confidence 43222110 0111111122 122234589999999999999988888776641 452 34 99999999
Q ss_pred cCCCChHHHHHh-hhcCCCCccceeeeeeeEEEeeCCCCCccccccccceeeecCCCCeEEEEEecCCCcee--e-ecCC
Q psy9141 152 ADGAYSGVRKCL-MKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLKSLM--N-FPRA 227 (379)
Q Consensus 152 AdG~~S~vr~~l-~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~--~-~p~~ 227 (379)
|||++|.+|+.+ +++.+.++....+. .......++ .... ...+.+.. .+.+.|...+.+. . .|..
T Consensus 154 ADG~~S~vR~~lgi~~~g~~~~~~~~~-~~~~~~~~~--~~~~------~~~~~~~g--~~~~~P~~~~~~~~~~~~~~~ 222 (493)
T PRK08244 154 ADGAGSIVRKQAGIAFPGTDATFTAML-GDVVLKDPP--PSSV------LSLCTREG--GVMIVPLSGGIYRVLIIDPER 222 (493)
T ss_pred CCCCChHHHHhcCCCccCCCcceEEEE-EEEEecCCC--Ccce------eEEEeCCc--eEEEEECCCCeEEEEEEcCCc
Confidence 999999999998 55555555544331 111111111 1100 01111221 2333343322211 1 1111
Q ss_pred CC----CCChhhhcccc--cccccccCCcccC---CCccccCCCCCccccCCcEEEe-eecccCCCcchhhhhHHHHHHH
Q psy9141 228 DQ----GGDKRDCLLHE--GTSRILVPNMRLS---NHLDRDQPCKPLLDFKNPIKIQ-SHAVVNEFYKQESLIVASLCQE 297 (379)
Q Consensus 228 ~~----~~~~~~~l~~~--g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~liG-Ah~~~~P~~GQG~n~gl~Da~~ 297 (379)
.. .....+.+.+. ............. .+.........|. ..|++|+| |++.++|+.|||+|+||+|+.+
T Consensus 223 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~ 301 (493)
T PRK08244 223 PQVPKDEPVTLEELKTSLIRICGTDFGLNDPVWMSRFGNATRQAERYR-SGRIFLAGDAAHIHFPAGGQGLNVGLQDAMN 301 (493)
T ss_pred ccccCCCCCCHHHHHHHHHHhhCCCCCcCCeeEEEecccceeeHhhhc-cCcEEEeecceeccCCccccccccchhhHHH
Confidence 00 00011111111 0000000000000 0001111223343 34899999 4444569999999999999999
Q ss_pred HHHhhcc---------ccccccccchhhhh
Q psy9141 298 KIEKMFD---------NTSTYKSRHINFIH 318 (379)
Q Consensus 298 L~~~l~~---------~~~~~~~~~~~~~~ 318 (379)
|+++|.+ .+.+|++++.....
T Consensus 302 La~~La~~l~g~~~~~lL~~Ye~eR~~~~~ 331 (493)
T PRK08244 302 LGWKLAAAIKGWAPDWLLDSYHAERHPVGT 331 (493)
T ss_pred HHHHHHHHHcCCCCchhhhhhHHHHHHHHH
Confidence 9999864 34568877644443
No 29
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.97 E-value=5.1e-30 Score=251.50 Aligned_cols=153 Identities=19% Similarity=0.236 Sum_probs=115.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI 85 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~ 85 (379)
++||+||||||+|+++|+.|++.|++|+|+||.+...... ..++. .+.+++.++|+++|+++++.+.+.+.....+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~--~~~a~--~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~ 77 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEG--RIRAG--VLEQGTVDLLREAGVGERMDREGLVHDGIEL 77 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCcccccc--cccee--EECHhHHHHHHHcCChHHHHhcCCccCcEEE
Confidence 4799999999999999999999999999999998532111 11222 4789999999999999999887878777777
Q ss_pred EecCCcEEEeeCCCC--------CcH-------HHHhcCCCCeEEeCceEEEEEe-cCCeEEEEEccCCceeEEEeecEE
Q psy9141 86 HGQNGKLREIPYDPV--------HNQ-------VELEQYPDCNIYFQHKLINLDV-NSGNVTFYRTEDNSETKITDNQLI 149 (379)
Q Consensus 86 ~~~~g~~~~~~~~~~--------~~~-------~~~~~~~gv~i~~~~~v~~i~~-~~~~v~v~~~~~G~~~~~i~adlV 149 (379)
+. ++....+++... .++ .......++++++++++++++. +++.+.+++..+|++.+ ++||+|
T Consensus 78 ~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~-i~ad~v 155 (392)
T PRK08243 78 RF-DGRRHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHR-LDCDFI 155 (392)
T ss_pred EE-CCEEEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEE-EEeCEE
Confidence 65 343333333211 012 1222346899999999999987 66677777632776556 999999
Q ss_pred EecCCCChHHHHHhh
Q psy9141 150 IGADGAYSGVRKCLM 164 (379)
Q Consensus 150 V~AdG~~S~vr~~l~ 164 (379)
|+|||.+|.+|+++.
T Consensus 156 VgADG~~S~vR~~~~ 170 (392)
T PRK08243 156 AGCDGFHGVSRASIP 170 (392)
T ss_pred EECCCCCCchhhhcC
Confidence 999999999999983
No 30
>PRK09126 hypothetical protein; Provisional
Probab=99.97 E-value=6e-31 Score=257.97 Aligned_cols=321 Identities=15% Similarity=0.136 Sum_probs=189.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCC-CCCCCCcccccccCHHHHHHHHHCCChHHHHhCC-CCcee
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRN-SGLSEGKSINLALSVRGREALRRIGLEDKLLAHG-IPMRA 82 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~-~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~-~~~~~ 82 (379)
+++||+||||||+|+++|+.|+++|++|+|+||.+.+.. .+...|+++ .+++++.++|+++|+++.+...+ .+...
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i--~l~~~~~~~L~~lGl~~~~~~~~~~~~~~ 79 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREI--ALTHASREILQRLGAWDRIPEDEISPLRD 79 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHH--HhhHHHHHHHHHCCChhhhccccCCccce
Confidence 368999999999999999999999999999999987542 123456765 67899999999999999886553 45566
Q ss_pred eEEEecCCcE-EEeeC--------CCCCcH--------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEe
Q psy9141 83 RMIHGQNGKL-REIPY--------DPVHNQ--------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITD 145 (379)
Q Consensus 83 ~~~~~~~g~~-~~~~~--------~~~~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~ 145 (379)
..+++..... ..++. ++...+ +.+.+..+++++++++|++++.++++++++++ +|++ ++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~-~g~~---~~ 155 (392)
T PRK09126 80 AKVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLA-NGRR---LT 155 (392)
T ss_pred EEEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEc-CCCE---EE
Confidence 6666543321 11111 110111 23334579999999999999988888888888 8876 99
Q ss_pred ecEEEecCCCChHHHHHh-hhcCCCCccceeeeeeeEEEeeCCCCCccccccccceeeecCCCCeEEEEEecCCCcee--
Q psy9141 146 NQLIIGADGAYSGVRKCL-MKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLKSLM-- 222 (379)
Q Consensus 146 adlVV~AdG~~S~vr~~l-~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~-- 222 (379)
||+||+|||.+|.+|+.+ ++.....+++.++.. .+..+. +. ......++... ..+.++|...+...
T Consensus 156 a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~---~~~~~~-~~------~~~~~~~~~~~-~~~~~~P~~~~~~~~~ 224 (392)
T PRK09126 156 ARLLVAADSRFSATRRQLGIGADMHDFGRTMLVC---RMRHEL-PH------HHTAWEWFGYG-QTLALLPLNGHLSSLV 224 (392)
T ss_pred eCEEEEeCCCCchhhHhcCCCccccccCCeEEEE---EEeccC-CC------CCEEEEEecCC-CCeEEeECCCCCEEEE
Confidence 999999999999999998 444444555443311 111111 00 01112222222 12344444433221
Q ss_pred -eecCCC---CCCChhhhcccc--cccccccCCcccC----CCccccCCCCCccccCCcEEEe-eecccCCCcchhhhhH
Q psy9141 223 -NFPRAD---QGGDKRDCLLHE--GTSRILVPNMRLS----NHLDRDQPCKPLLDFKNPIKIQ-SHAVVNEFYKQESLIV 291 (379)
Q Consensus 223 -~~p~~~---~~~~~~~~l~~~--g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~liG-Ah~~~~P~~GQG~n~g 291 (379)
.++.+. ......+.+... ..+......+... .......++.+|. ..+++|+| |++.++|+.|||+|+|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~rv~LvGDAAh~~~P~~GqG~~~a 303 (392)
T PRK09126 225 LTLPPDQIEALLALDPEAFAAEVTARFKGRLGAMRLVSSRHAYPLVAVYAHRFV-AKRFALIGDAAVGMHPVTAHGFNLG 303 (392)
T ss_pred EECCHHHHHHHHcCCHHHHHHHHHHHHhhhccCeEEcCCCcEeechHHHHHHHh-hcceEEEehhhhcCCCcccchhhhh
Confidence 112110 000001111100 0000000111100 0001112234454 35899999 4444559999999999
Q ss_pred HHHHHHHHHhhcc------------ccccccccc-------hhhhhheeeeEEeeecccccchhhHHHHHHhhhh
Q psy9141 292 ASLCQEKIEKMFD------------NTSTYKSRH-------INFIHRSYHLYTVDIGVHKVTESSILNLLLRGMK 347 (379)
Q Consensus 292 l~Da~~L~~~l~~------------~~~~~~~~~-------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~ 347 (379)
++|+..|+++|.+ .+..|++++ +..++.+..+|..+.++.+ .+-|++++-+.
T Consensus 304 i~da~~la~~L~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~----~~r~~~~~~~~ 374 (392)
T PRK09126 304 LKGQDILARLILAAARRGQDIGAASLLERYERKHRLATRPLYHATNAIAALYTDDRPPAR----LLRRAVLRAAN 374 (392)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH----HHHHHHHHHHh
Confidence 9999999999853 234577666 3444444446665544433 44555555443
No 31
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.97 E-value=3e-30 Score=252.07 Aligned_cols=316 Identities=19% Similarity=0.209 Sum_probs=187.6
Q ss_pred cEEEECCChHHHHHHHHHHhCC-CcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQ-YEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH 86 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G-~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 86 (379)
||+||||||+|+++|+.|+++| ++|+|+||.+.+......+++++ .+++++.++|+++|+++.+...+.+.....+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~--~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~ 78 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSL--ALSYGSKQILEKLGLWPKLAPFATPILDIHVS 78 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeE--eccHHHHHHHHHCCChhhhHhhcCccceEEEE
Confidence 7999999999999999999999 99999999987654322345665 68899999999999999987777666666555
Q ss_pred ecCCc-EEEee---CCCC-----CcH--------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEE
Q psy9141 87 GQNGK-LREIP---YDPV-----HNQ--------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLI 149 (379)
Q Consensus 87 ~~~g~-~~~~~---~~~~-----~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlV 149 (379)
+..+. ..... +... ..+ +.+...+|++++++++|++++.+++++++++. +|++ ++||+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~-~g~~---~~ad~v 154 (382)
T TIGR01984 79 DQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLD-NGQQ---LRAKLL 154 (382)
T ss_pred cCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEEC-CCCE---EEeeEE
Confidence 43211 11111 1110 111 22333359999999999999988889999888 8876 999999
Q ss_pred EecCCCChHHHHHh-hhcCCCCccceeeeeeeEEEeeCCCCCccccccccceeeecCCCCeEEEEEecCCC-c--ee-ee
Q psy9141 150 IGADGAYSGVRKCL-MKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLK-S--LM-NF 224 (379)
Q Consensus 150 V~AdG~~S~vr~~l-~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~-~--~~-~~ 224 (379)
|+|||.+|.+|+.+ +......+++..+. .......+. .. .. ...+.+.. .+.+.|...+ . ++ ..
T Consensus 155 V~AdG~~S~vr~~l~~~~~~~~~~~~~~~-~~~~~~~~~--~~-~~-----~~~~~~~g--~~~~~p~~~~~~~~~~~~~ 223 (382)
T TIGR01984 155 IAADGANSKVRELLSIPTEEHDYNQTALI-ANIRHEQPH--QG-CA-----FERFTPHG--PLALLPLKDNYRSSLVWCL 223 (382)
T ss_pred EEecCCChHHHHHcCCCCcccccCCEEEE-EEEEecCCC--CC-EE-----EEeeCCCC--CeEECcCCCCCCEEEEEEC
Confidence 99999999999998 44444455444331 111111111 01 00 01111111 2333343323 1 11 11
Q ss_pred cCCC-------CCCChhhhcccccccccccCCcccC----CCccccCCCCCccccCCcEEEe--eecccCCCcchhhhhH
Q psy9141 225 PRAD-------QGGDKRDCLLHEGTSRILVPNMRLS----NHLDRDQPCKPLLDFKNPIKIQ--SHAVVNEFYKQESLIV 291 (379)
Q Consensus 225 p~~~-------~~~~~~~~l~~~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~liG--Ah~~~~P~~GQG~n~g 291 (379)
|.+. ......+.+.+. +.......... ..........+|. ..|++++| ||++ +|+.|||+|++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~rv~LvGDAAh~~-~P~~GqG~~~a 299 (382)
T TIGR01984 224 PSKQADTIANLPDAEFLAELQQA--FGWRLGKITQVGERKTYPLKLRIAETHV-HPRVVLIGNAAQTL-HPIAGQGFNLG 299 (382)
T ss_pred CHHHHHHHHcCCHHHHHHHHHHH--HhhhccCeEEcCCccEeecchhhhhhee-cCCEEEEeeccccc-CCccccchhhh
Confidence 1110 000011111111 00000000000 0011112233444 24899999 5555 59999999999
Q ss_pred HHHHHHHHHhhccc---------cccccccc-------hhhhhheeeeEEeeecccccchhhHHHHHHhhhhc
Q psy9141 292 ASLCQEKIEKMFDN---------TSTYKSRH-------INFIHRSYHLYTVDIGVHKVTESSILNLLLRGMKK 348 (379)
Q Consensus 292 l~Da~~L~~~l~~~---------~~~~~~~~-------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~ 348 (379)
|+||..|+++|.+. +..|++++ +...+.++++|..+.++ ...+-|++++-+.+
T Consensus 300 l~Da~~La~~L~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~----~~~~r~~~~~~~~~ 368 (382)
T TIGR01984 300 LRDVETLAEVLIDARIDLGTYALLQEYLRRRQFDQFITIGLTDGLNRLFSNHIPL----LRALRNLGLLALEN 368 (382)
T ss_pred HHHHHHHHHHHHHhccCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchH----HHHHHHHHHHHHhc
Confidence 99999999998643 33576665 34455556677554443 24566777765543
No 32
>PTZ00367 squalene epoxidase; Provisional
Probab=99.97 E-value=1.3e-29 Score=256.62 Aligned_cols=278 Identities=14% Similarity=0.157 Sum_probs=166.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRAR 83 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~ 83 (379)
+.++||+||||||+|+++|+.|+++|++|+|+||++..... ...+ .++++++.++|+++|+|+.+...+.++.+.
T Consensus 31 ~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~---r~~G--~~L~p~g~~~L~~LGL~d~l~~i~~~~~~~ 105 (567)
T PTZ00367 31 NYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPD---RIVG--ELLQPGGVNALKELGMEECAEGIGMPCFGY 105 (567)
T ss_pred ccCccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccc---hhhh--hhcCHHHHHHHHHCCChhhHhhcCcceeee
Confidence 35689999999999999999999999999999998621110 1122 258999999999999999998778888888
Q ss_pred EEEecCCcEEEeeCCCCC-----cH--------HHH--hcCCCCeEEeCceEEEEEecCC-------eEEEEEccC----
Q psy9141 84 MIHGQNGKLREIPYDPVH-----NQ--------VEL--EQYPDCNIYFQHKLINLDVNSG-------NVTFYRTED---- 137 (379)
Q Consensus 84 ~~~~~~g~~~~~~~~~~~-----~~--------~~~--~~~~gv~i~~~~~v~~i~~~~~-------~v~v~~~~~---- 137 (379)
.+++.+|.....++.... .. ..+ +..++++++. .+++++..+++ +++++.. +
T Consensus 106 ~v~~~~G~~~~i~~~~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~-~~v~~l~~~~~~~~~~v~gV~~~~~-~~~~~ 183 (567)
T PTZ00367 106 VVFDHKGKQVKLPYGAGASGVSFHFGDFVQNLRSHVFHNCQDNVTMLE-GTVNSLLEEGPGFSERAYGVEYTEA-EKYDV 183 (567)
T ss_pred EEEECCCCEEEecCCCCCceeEeEHHHHHHHHHHHHHhhcCCCcEEEE-eEEEEeccccCccCCeeEEEEEecC-Ccccc
Confidence 888876654444443211 11 222 2457899875 47888755443 3555544 3
Q ss_pred -------------------CceeEEEeecEEEecCCCChHHHHHhh-hcCCCCccceeeeeeeEEEeeCCCCCccccccc
Q psy9141 138 -------------------NSETKITDNQLIIGADGAYSGVRKCLM-KQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYK 197 (379)
Q Consensus 138 -------------------G~~~~~i~adlVV~AdG~~S~vr~~l~-~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p 197 (379)
|++ ++||+||+|||.+|.+|+++. .....++.+.++.........|. +
T Consensus 184 ~~~~f~~~~~~~~~~~~~~g~~---~~AdLvVgADG~~S~vR~~l~~~~~~~~~~s~~~g~~~~~~~lp~---------~ 251 (567)
T PTZ00367 184 PENPFREDPPSANPSATTVRKV---ATAPLVVMCDGGMSKFKSRYQHYTPASENHSHFVGLVLKNVRLPK---------E 251 (567)
T ss_pred cccccccccccccccccccceE---EEeCEEEECCCcchHHHHHccCCCCCcCcceEEEEEEEecccCCC---------C
Confidence 334 999999999999999999983 33334444443322112222222 1
Q ss_pred cceeeecCCCCeEEEEEecCCCcee---eecCCCCC--CChhhhcccc---c-------cc-cccc--CCcccCCCcccc
Q psy9141 198 NRLLSSVPEVRKRISLRAQSLKSLM---NFPRADQG--GDKRDCLLHE---G-------TS-RILV--PNMRLSNHLDRD 259 (379)
Q Consensus 198 ~~~~~~~p~~~~~~~~~~~~~~~~~---~~p~~~~~--~~~~~~l~~~---g-------~~-~~~~--~~~~~~~~~~~~ 259 (379)
...+.++.+. ..+.++|...++.. .++..... .+..+.+.+. . .+ ..+. +.+... ....
T Consensus 252 ~~~~v~~g~~-gpi~~yPl~~~~~r~lv~~~~~~~p~~~~~~~~l~~~~~p~l~~~l~~~f~~~l~~~~~l~~~--p~~~ 328 (567)
T PTZ00367 252 QHGTVFLGKT-GPILSYRLDDNELRVLVDYNKPTLPSLEEQSEWLIEDVAPHLPENMRESFIRASKDTKRIRSM--PNAR 328 (567)
T ss_pred CeeEEEEcCC-ceEEEEEcCCCeEEEEEEecCCcCCChHHHHHHHHHhhcccCcHHHHHHHHHhhcccCCeEEe--eHhh
Confidence 2222233222 34556665544432 22222111 0111111110 0 00 0000 000000 1111
Q ss_pred CCCCCccccCCcEEEe-eecccCCCcchhhhhHHHHHHHHHHhhcc
Q psy9141 260 QPCKPLLDFKNPIKIQ-SHAVVNEFYKQESLIVASLCQEKIEKMFD 304 (379)
Q Consensus 260 ~~~~~~~~~~~~~liG-Ah~~~~P~~GQG~n~gl~Da~~L~~~l~~ 304 (379)
.|..+|. ..++++|| |++++||++|||+|+||+||..|+++|..
T Consensus 329 ~p~~~~~-~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~ 373 (567)
T PTZ00367 329 YPPAFPS-IKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTG 373 (567)
T ss_pred CCCccCC-CCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHh
Confidence 2222333 34899999 55556699999999999999999999863
No 33
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.97 E-value=2.7e-29 Score=256.40 Aligned_cols=164 Identities=19% Similarity=0.350 Sum_probs=120.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRAR 83 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~ 83 (379)
...+||+||||||+||++|+.|+++|++|+||||.+..... ++++ +++++++++|+++|+++++.+.+.+....
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~----~ra~--~l~~~~~~~l~~lGl~~~l~~~~~~~~~~ 94 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTG----SRAI--CFAKRSLEIFDRLGCGERMVDKGVSWNVG 94 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCC----CeEE--EEcHHHHHHHHHcCCcHHHHhhCceeece
Confidence 35689999999999999999999999999999999865433 5665 68999999999999999988776655443
Q ss_pred EEEecCCcEEEeeCC----C----C--CcH--------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEcc-CCceeEEE
Q psy9141 84 MIHGQNGKLREIPYD----P----V--HNQ--------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTE-DNSETKIT 144 (379)
Q Consensus 84 ~~~~~~g~~~~~~~~----~----~--~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~-~G~~~~~i 144 (379)
.++..++....+.+. . . ..+ +.+.+.+++++++++++++++.+++++++++.. +|+ .+ +
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~-~~-i 172 (547)
T PRK08132 95 KVFLRDEEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGP-YT-L 172 (547)
T ss_pred eEEeCCCeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCc-EE-E
Confidence 344333322222111 0 0 122 234455689999999999999998888776541 443 24 8
Q ss_pred eecEEEecCCCChHHHHHh-hhcCCCCcccee
Q psy9141 145 DNQLIIGADGAYSGVRKCL-MKQSMFNYSQTY 175 (379)
Q Consensus 145 ~adlVV~AdG~~S~vr~~l-~~~~~~~~~~~~ 175 (379)
+||+||+|||.+|.+|+.+ +...+..+...+
T Consensus 173 ~ad~vVgADG~~S~vR~~lg~~~~g~~~~~~~ 204 (547)
T PRK08132 173 EADWVIACDGARSPLREMLGLEFEGRTFEDRF 204 (547)
T ss_pred EeCEEEECCCCCcHHHHHcCCCCCCccccceE
Confidence 9999999999999999988 555555554443
No 34
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.97 E-value=1.5e-29 Score=247.13 Aligned_cols=279 Identities=18% Similarity=0.186 Sum_probs=169.4
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCC-CCCCCcccccccCHHHHHHHHHCCChHHHHh-CCCCceeeEE
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNS-GLSEGKSINLALSVRGREALRRIGLEDKLLA-HGIPMRARMI 85 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~-~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~-~~~~~~~~~~ 85 (379)
||+||||||+|+++|+.|++.|++|+|+||.+.+... ..++++++ .+++++.+.|+++|+++++.+ .+.+.....+
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~--~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 78 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVS--ALSAASIRLLEKLGVWDKIEPDRAQPIRDIHV 78 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCccee--ecCHHHHHHHHHCCchhhhhhhcCCCceEEEE
Confidence 7999999999999999999999999999999976533 22345665 689999999999999999987 6777777777
Q ss_pred EecCCcE-EEeeCC---CC-----CcH--------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecE
Q psy9141 86 HGQNGKL-REIPYD---PV-----HNQ--------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQL 148 (379)
Q Consensus 86 ~~~~g~~-~~~~~~---~~-----~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adl 148 (379)
++..+.. ..++.. .. ..+ +.+.+..+++++++++|++++.+++++++++. +|++ +++|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~-~g~~---~~~~~ 154 (385)
T TIGR01988 79 SDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLD-DGQQ---LRARL 154 (385)
T ss_pred EeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEEC-CCCE---EEeeE
Confidence 7655432 111110 00 111 23344445999999999999998889999888 8887 99999
Q ss_pred EEecCCCChHHHHHh-hhcCCCCccceeeeeeeEEEeeCCCCCccccccccceeeecCCCCeEEEEEecCCCce--ee-e
Q psy9141 149 IIGADGAYSGVRKCL-MKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLKSL--MN-F 224 (379)
Q Consensus 149 VV~AdG~~S~vr~~l-~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~--~~-~ 224 (379)
||+|||.+|.+|+.+ +......+....+.. ......+. .... .....+.. .+.+.|...+.. .. +
T Consensus 155 vi~adG~~S~vr~~l~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~-----~~~~~~~g--~~~~~p~~~~~~~~~~~~ 223 (385)
T TIGR01988 155 LVGADGANSKVRQLAGIPTTGWDYGQSAVVA-NVKHERPH---QGTA-----WERFTPTG--PLALLPLPDNRSSLVWTL 223 (385)
T ss_pred EEEeCCCCCHHHHHcCCCccccccCCeEEEE-EEEecCCC---CCEE-----EEEecCCC--CEEEeECCCCCeEEEEEC
Confidence 999999999999988 444444554443311 11111111 0000 00111211 233344433321 11 1
Q ss_pred cCCC------C-CCChhhhcccc--cccccccCCcccCCCccccCCCCCccccCCcEEEe-eecccCCCcchhhhhHHHH
Q psy9141 225 PRAD------Q-GGDKRDCLLHE--GTSRILVPNMRLSNHLDRDQPCKPLLDFKNPIKIQ-SHAVVNEFYKQESLIVASL 294 (379)
Q Consensus 225 p~~~------~-~~~~~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liG-Ah~~~~P~~GQG~n~gl~D 294 (379)
+.+. . .++..+.+.+. ++...+...-..........++.+|. ..+++++| |++.++|+.|||+|+|++|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~LiGDAah~~~P~~G~G~~~Ai~d 302 (385)
T TIGR01988 224 PPEEAERLLALSDEEFLAELQRAFGSRLGAITLVGERHAFPLSLTHAKRYV-APRLALIGDAAHTIHPLAGQGLNLGLRD 302 (385)
T ss_pred CHHHHHHHHcCCHHHHHHHHHHHHhhhcCceEeccCcceeechhhhhhhee-cCceEEEecccccCCccccchhhhhHHH
Confidence 1100 0 01111111111 00000000000000011112334454 35899999 4444559999999999999
Q ss_pred HHHHHHhhcc
Q psy9141 295 CQEKIEKMFD 304 (379)
Q Consensus 295 a~~L~~~l~~ 304 (379)
+..|+++|.+
T Consensus 303 a~~La~~L~~ 312 (385)
T TIGR01988 303 VAALAEVLED 312 (385)
T ss_pred HHHHHHHHHH
Confidence 9999999865
No 35
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.97 E-value=6.4e-29 Score=243.45 Aligned_cols=152 Identities=16% Similarity=0.187 Sum_probs=110.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH 86 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 86 (379)
+||+||||||+|+++|+.|++.|++|+||||.+..... ...++. .++++++++|+++|+|+++...+.+.....++
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~--~~~~a~--~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 78 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVL--GRIRAG--VLEQGTVDLLREAGVDERMDREGLVHEGTEIA 78 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccC--CceeEe--eECHHHHHHHHHCCChHHHHhcCceecceEEe
Confidence 79999999999999999999999999999999853211 112222 47899999999999999998877777777666
Q ss_pred ecCCcEEEeeCCCC--------CcH-------HHHhcCCCCeEEeCceEEEEEe-cCCeEEEEEccCCceeEEEeecEEE
Q psy9141 87 GQNGKLREIPYDPV--------HNQ-------VELEQYPDCNIYFQHKLINLDV-NSGNVTFYRTEDNSETKITDNQLII 150 (379)
Q Consensus 87 ~~~g~~~~~~~~~~--------~~~-------~~~~~~~gv~i~~~~~v~~i~~-~~~~v~v~~~~~G~~~~~i~adlVV 150 (379)
+.. .....++... .++ .......++.++++++++.+.. +++.+.|++..+|+..+ ++||+||
T Consensus 79 ~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~-i~adlvI 156 (390)
T TIGR02360 79 FDG-QRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHR-LDCDFIA 156 (390)
T ss_pred eCC-EEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEE-EEeCEEE
Confidence 533 2333333211 111 1112234789999998888755 45555666532676445 9999999
Q ss_pred ecCCCChHHHHHhh
Q psy9141 151 GADGAYSGVRKCLM 164 (379)
Q Consensus 151 ~AdG~~S~vr~~l~ 164 (379)
+|||.+|.+|+++.
T Consensus 157 GADG~~S~VR~~l~ 170 (390)
T TIGR02360 157 GCDGFHGVSRASIP 170 (390)
T ss_pred ECCCCchhhHHhcC
Confidence 99999999999973
No 36
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.97 E-value=1.1e-29 Score=249.22 Aligned_cols=320 Identities=18% Similarity=0.167 Sum_probs=184.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhC---CCcEEEEccCCCCC-CCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCC
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKN---QYEVNLYEAREDIR-NSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIP 79 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~---G~~V~viE~~~~~~-~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~ 79 (379)
|+.+||+||||||+|+++|+.|+++ |++|+||||..... ..+..+++++ .+.+++.++|+++|+|+.+.+.+.+
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~--~l~~~~~~~l~~lgl~~~~~~~~~~ 78 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAI--ALAAGTCQQLARLGVWQALADCATP 78 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccce--eccHHHHHHHHHCCChhhhHhhcCC
Confidence 4568999999999999999999998 99999999964222 2223345665 6889999999999999999887777
Q ss_pred ceeeEEEecCCcE-EEe---eCCCC-----CcH--------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeE
Q psy9141 80 MRARMIHGQNGKL-REI---PYDPV-----HNQ--------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETK 142 (379)
Q Consensus 80 ~~~~~~~~~~g~~-~~~---~~~~~-----~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~ 142 (379)
.....+.+..... ..+ .+... ..+ ..+.+.++++++++++|+++..+++++++++. +|.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~-~g~~-- 155 (395)
T PRK05732 79 ITHIHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLD-DGET-- 155 (395)
T ss_pred ccEEEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEEC-CCCE--
Confidence 6665554322111 011 11111 011 23345578999999999999988889999888 8876
Q ss_pred EEeecEEEecCCCChHHHHHh-hhcCCCCccceeeeeeeEEEeeCCCCCccccccccceeeecCCCCeEEEEEecCCCce
Q psy9141 143 ITDNQLIIGADGAYSGVRKCL-MKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLKSL 221 (379)
Q Consensus 143 ~i~adlVV~AdG~~S~vr~~l-~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~ 221 (379)
+++|+||+|||.+|.+|+.+ +......+++.++. .... ......+. . ...+.+.. .+.+.|...+..
T Consensus 156 -~~a~~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~-~-----~~~~~~~g--~~~~~p~~~g~~ 223 (395)
T PRK05732 156 -LTGRLLVAADGSHSALREALGIDWQQHPYEQVAVI-ANVT--TSEAHQGR-A-----FERFTEHG--PLALLPMSDGRC 223 (395)
T ss_pred -EEeCEEEEecCCChhhHHhhCCCccceecCCEEEE-EEEE--ecCCCCCE-E-----EEeecCCC--CEEEeECCCCCe
Confidence 99999999999999999987 44333444443321 1111 11000010 0 00011111 122333332322
Q ss_pred --e-eecCCC------CC-CChhhhcccc-cccccccCCccc----CCCccccCCCCCccccCCcEEEe-eecccCCCcc
Q psy9141 222 --M-NFPRAD------QG-GDKRDCLLHE-GTSRILVPNMRL----SNHLDRDQPCKPLLDFKNPIKIQ-SHAVVNEFYK 285 (379)
Q Consensus 222 --~-~~p~~~------~~-~~~~~~l~~~-g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~liG-Ah~~~~P~~G 285 (379)
+ .+|.+. .. ....+.+... ++ . ...+.. ...........+|. ..+++++| |++.++|+.|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~l~~~~~~~~~-~grv~LvGDAAh~~~P~~G 299 (395)
T PRK05732 224 SLVWCHPLEDAEEVLSWSDAQFLAELQQAFGW-R--LGRITHAGKRSAYPLALVTAAQQI-SHRLALVGNAAQTLHPIAG 299 (395)
T ss_pred EEEEECCHHHHHHHHcCCHHHHHHHHHHHHHh-h--hcceeecCCcceecccccchhhhc-cCcEEEEeecccccCCccc
Confidence 1 112110 00 0011111110 11 0 001100 00011112234454 35899999 4444559999
Q ss_pred hhhhhHHHHHHHHHHhhcc------------ccccccccc-------hhhhhheeeeEEeeecccccchhhHHHHHHhhh
Q psy9141 286 QESLIVASLCQEKIEKMFD------------NTSTYKSRH-------INFIHRSYHLYTVDIGVHKVTESSILNLLLRGM 346 (379)
Q Consensus 286 QG~n~gl~Da~~L~~~l~~------------~~~~~~~~~-------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ 346 (379)
||+|+|++|+..|+++|.. .++.|++++ +..++.+.++|..+.++.+ .+-|+++.-+
T Consensus 300 qG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~----~~r~~~~~~~ 375 (395)
T PRK05732 300 QGFNLGLRDVMSLAETLTQALARGEDIGDYAVLQRYQQRRQQDREATIGFTDGLVRLFANRWAPLV----VGRNLGLMAM 375 (395)
T ss_pred cccchHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH----HHHHHHHHHH
Confidence 9999999999999999842 344577665 3344455556755444322 4455555444
Q ss_pred hc
Q psy9141 347 KK 348 (379)
Q Consensus 347 ~~ 348 (379)
.+
T Consensus 376 ~~ 377 (395)
T PRK05732 376 DL 377 (395)
T ss_pred cc
Confidence 33
No 37
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.97 E-value=5.8e-29 Score=244.24 Aligned_cols=321 Identities=17% Similarity=0.223 Sum_probs=188.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeE
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARM 84 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~ 84 (379)
++.||+||||||+|+++|+.|++.|++|+|+||.+..... |+++ .+++++.++|+++|+++.+.+.+.+.....
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~----g~gi--~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~ 76 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEI----GAGI--QLGPNAFSALDALGVGEAARQRAVFTDHLT 76 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccc----ccee--eeCchHHHHHHHcCChHHHHhhccCCcceE
Confidence 4579999999999999999999999999999999876543 6666 689999999999999999887776666666
Q ss_pred EEec-CCcE-EEeeCC--------CC---CcH--------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEE
Q psy9141 85 IHGQ-NGKL-REIPYD--------PV---HNQ--------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKI 143 (379)
Q Consensus 85 ~~~~-~g~~-~~~~~~--------~~---~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~ 143 (379)
+++. ++.. ...++. .. ..+ +.+.+..++++++++++++++.+++++++++. +|++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~-~g~~--- 152 (396)
T PRK08163 77 MMDAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQ-QGNR--- 152 (396)
T ss_pred EEeCCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEc-CCCE---
Confidence 6653 2332 222211 10 011 23334456999999999999988888998888 8877
Q ss_pred EeecEEEecCCCChHHHHHhhhcCCCCccceeeeeeeEEEeeCCCCCccccccccceeeecCCCCeEEEEEecCCCceee
Q psy9141 144 TDNQLIIGADGAYSGVRKCLMKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLKSLMN 223 (379)
Q Consensus 144 i~adlVV~AdG~~S~vr~~l~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~ 223 (379)
++||+||+|||.+|.+|+.+.+.. ..+...............+ ..... .....+.... ..++.+|...+..++
T Consensus 153 ~~ad~vV~AdG~~S~~r~~~~g~~-~~~~g~~~~~~~~~~~~~~---~~~~~--~~~~~~~g~~-~~~~~~p~~~g~~~~ 225 (396)
T PRK08163 153 WTGDALIGCDGVKSVVRQSLVGDA-PRVTGHVVYRAVIDVDDMP---EDLRI--NAPVLWAGPH-CHLVHYPLRGGEQYN 225 (396)
T ss_pred EecCEEEECCCcChHHHhhccCCC-CCccccEEEEEEEeHHHCc---chhcc--CccEEEEcCC-ceEEEEEecCCeEEE
Confidence 999999999999999999874332 2222221111111110000 00000 0011111111 233444443333221
Q ss_pred ----ecCCCC-----CCChhhhcccc--ccc---ccccCCccc-C-CCccccCCCCCccccCCcEEEe--eecccCCCcc
Q psy9141 224 ----FPRADQ-----GGDKRDCLLHE--GTS---RILVPNMRL-S-NHLDRDQPCKPLLDFKNPIKIQ--SHAVVNEFYK 285 (379)
Q Consensus 224 ----~p~~~~-----~~~~~~~l~~~--g~~---~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~liG--Ah~~~~P~~G 285 (379)
++.+.. .....+.+.+. ++. ..+...... . .......++..|. ..|++|+| ||+|. |+.|
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~grv~LiGDAAH~~~-P~~G 303 (396)
T PRK08163 226 LVVTFHSREQEEWGVKDGSKEEVLSYFEGIHPRPRQMLDKPTSWKRWATADREPVAKWS-TGRVTLLGDAAHPMT-QYMA 303 (396)
T ss_pred EEEEECCCCCcccccCCCCHHHHHHHHcCCChHHHHHHhcCCceeEccccCCCcccccc-cCcEEEEecccccCC-cchh
Confidence 111110 00011111111 110 000000000 0 0011223455665 35899999 66665 9999
Q ss_pred hhhhhHHHHHHHHHHhhcc-------ccccccccchhhhhhee-------eeEEeeecccccchhhHHHHHHhhhhcc
Q psy9141 286 QESLIVASLCQEKIEKMFD-------NTSTYKSRHINFIHRSY-------HLYTVDIGVHKVTESSILNLLLRGMKKN 349 (379)
Q Consensus 286 QG~n~gl~Da~~L~~~l~~-------~~~~~~~~~~~~~~~~~-------~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 349 (379)
||+|+|++||..|+++|.. .+..|+++++.-+..+. ++|..+ . .+..+.|.++....+.
T Consensus 304 qG~n~ai~Da~~La~~L~~~~~~~~~al~~y~~~R~~r~~~~~~~s~~~~~~~~~~-~----~~~~~r~~~~~~~~~~ 376 (396)
T PRK08163 304 QGACMALEDAVTLGKALEGCDGDAEAAFALYESVRIPRTARVVLSAREMGRIYHAK-G----VERQVRNLLWKGRTQE 376 (396)
T ss_pred ccHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhCCC-C----HHHHHHHHHhhccChh
Confidence 9999999999999999853 34567766644443333 244322 1 2456667666655433
No 38
>PRK06847 hypothetical protein; Provisional
Probab=99.97 E-value=7.7e-29 Score=241.57 Aligned_cols=290 Identities=20% Similarity=0.245 Sum_probs=176.7
Q ss_pred CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCc
Q psy9141 1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPM 80 (379)
Q Consensus 1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~ 80 (379)
|.. ..||+||||||+||++|+.|++.|++|+|+|+++.+... |.++ .+++++.++|+++|+++.+.+.+.+.
T Consensus 1 m~~--~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~----g~g~--~l~~~~~~~l~~~gl~~~~~~~~~~~ 72 (375)
T PRK06847 1 MAA--VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVY----GAGI--TLQGNALRALRELGVLDECLEAGFGF 72 (375)
T ss_pred CCC--cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccC----Ccee--eecHHHHHHHHHcCCHHHHHHhCCCc
Confidence 553 469999999999999999999999999999999866543 6665 68899999999999999998887788
Q ss_pred eeeEEEecCCcEE-EeeC--------C--CCCcH-------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeE
Q psy9141 81 RARMIHGQNGKLR-EIPY--------D--PVHNQ-------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETK 142 (379)
Q Consensus 81 ~~~~~~~~~g~~~-~~~~--------~--~~~~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~ 142 (379)
....+++..|... ..+. . ....+ .......+++++++++|++++.+++++++.+. +|++
T Consensus 73 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~-~g~~-- 149 (375)
T PRK06847 73 DGVDLFDPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFS-DGTT-- 149 (375)
T ss_pred cceEEECCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEc-CCCE--
Confidence 7777777666532 1111 1 01111 12223358999999999999988888888888 8887
Q ss_pred EEeecEEEecCCCChHHHHHhhhc-CCCCccceeeeeeeEEEeeCCCCCccccccccceeeecCCCCeEEEEEecCCCce
Q psy9141 143 ITDNQLIIGADGAYSGVRKCLMKQ-SMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLKSL 221 (379)
Q Consensus 143 ~i~adlVV~AdG~~S~vr~~l~~~-~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~ 221 (379)
+++|+||+|||.+|.+|+.+.+. ....|.... ++....|.... +. ....+.... ..+.++|...+..
T Consensus 150 -~~ad~vI~AdG~~s~~r~~l~~~~~~~~~~g~~----~~~~~~~~~~~----~~--~~~~~~~~~-~~~~~~p~~~~~~ 217 (375)
T PRK06847 150 -GRYDLVVGADGLYSKVRSLVFPDEPEPEYTGQG----VWRAVLPRPAE----VD--RSLMYLGPT-TKAGVVPLSEDLM 217 (375)
T ss_pred -EEcCEEEECcCCCcchhhHhcCCCCCceeccce----EEEEEecCCCC----cc--ceEEEeCCC-cEEEEEcCCCCeE
Confidence 99999999999999999988432 222232221 12222221110 00 011122111 2334444443333
Q ss_pred eee---cCCCCC---C-Chhhhcccc--cc----cccccCCcccCC----Cc-cccCCCCCccccCCcEEEe--eecccC
Q psy9141 222 MNF---PRADQG---G-DKRDCLLHE--GT----SRILVPNMRLSN----HL-DRDQPCKPLLDFKNPIKIQ--SHAVVN 281 (379)
Q Consensus 222 ~~~---p~~~~~---~-~~~~~l~~~--g~----~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~liG--Ah~~~~ 281 (379)
+.+ +.+... . +..+.+.+. .+ ...+...+.... .. .......+|. ..|++|+| ||++.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~grv~LiGDAaH~~~- 295 (375)
T PRK06847 218 YLFVTEPRPDNPRIEPDTLAALLRELLAPFGGPVLQELREQITDDAQVVYRPLETLLVPAPWH-RGRVVLIGDAAHATT- 295 (375)
T ss_pred EEEEeccCcccccCChHHHHHHHHHHHhhcCchHHHHHHHhcCCccceeeccHhhccCCCCcc-CCeEEEEechhccCC-
Confidence 222 111100 0 001111110 00 000000000000 00 0111234565 45899999 66665
Q ss_pred CCcchhhhhHHHHHHHHHHhhcc------ccccccccchh
Q psy9141 282 EFYKQESLIVASLCQEKIEKMFD------NTSTYKSRHIN 315 (379)
Q Consensus 282 P~~GQG~n~gl~Da~~L~~~l~~------~~~~~~~~~~~ 315 (379)
|+.|||+|+|++||..|+++|.+ .++.|++++..
T Consensus 296 P~~GqG~n~aieDA~~La~~L~~~~~~~~al~~Y~~~R~~ 335 (375)
T PRK06847 296 PHLAQGAGMAIEDAIVLAEELARHDSLEAALQAYYARRWE 335 (375)
T ss_pred CCccccHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999964 33356655533
No 39
>PRK07538 hypothetical protein; Provisional
Probab=99.96 E-value=4.1e-28 Score=239.59 Aligned_cols=159 Identities=24% Similarity=0.329 Sum_probs=117.1
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEEe
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIHG 87 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~ 87 (379)
||+||||||+||++|+.|+++|++|+|+||.+..... |.++ .++++++++|+++|+++.+...+.+.....+++
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~----g~gi--~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~ 75 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPL----GVGI--NLLPHAVRELAELGLLDALDAIGIRTRELAYFN 75 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCccccc----Ccce--eeCchHHHHHHHCCCHHHHHhhCCCCcceEEEc
Confidence 8999999999999999999999999999999866533 6666 678999999999999999887777777777776
Q ss_pred cCCcEEE-ee------CCCC---CcH--------HHHhcC-CCCeEEeCceEEEEEecCCeEEEEEcc--CCceeEEEee
Q psy9141 88 QNGKLRE-IP------YDPV---HNQ--------VELEQY-PDCNIYFQHKLINLDVNSGNVTFYRTE--DNSETKITDN 146 (379)
Q Consensus 88 ~~g~~~~-~~------~~~~---~~~--------~~~~~~-~gv~i~~~~~v~~i~~~~~~v~v~~~~--~G~~~~~i~a 146 (379)
..|.... .+ +... ..+ ..+.+. ...+|+++++|++++.+++++.+.+.+ +|+..+ ++|
T Consensus 76 ~~g~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~-~~a 154 (413)
T PRK07538 76 RHGQRIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVS-VRG 154 (413)
T ss_pred CCCCEEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccce-EEe
Confidence 6554321 11 1111 111 122232 335799999999999888876666541 233334 999
Q ss_pred cEEEecCCCChHHHHHhhhcC-CCCccc
Q psy9141 147 QLIIGADGAYSGVRKCLMKQS-MFNYSQ 173 (379)
Q Consensus 147 dlVV~AdG~~S~vr~~l~~~~-~~~~~~ 173 (379)
|+||+|||.+|.+|+++.+.. ...|..
T Consensus 155 dlvIgADG~~S~vR~~l~~~~~~~~~~g 182 (413)
T PRK07538 155 DVLIGADGIHSAVRAQLYPDEGPPRWNG 182 (413)
T ss_pred eEEEECCCCCHHHhhhhcCCCCCCcccc
Confidence 999999999999999984322 344443
No 40
>PLN02985 squalene monooxygenase
Probab=99.96 E-value=2.7e-28 Score=245.74 Aligned_cols=276 Identities=17% Similarity=0.152 Sum_probs=160.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhC-CCCceee
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAH-GIPMRAR 83 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~-~~~~~~~ 83 (379)
..+||+||||||+|+++|+.|++.|++|+|+||++..... +.++ .+++++.++|+++|+++.+... ..+..++
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~----~~g~--~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~ 115 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPER----MMGE--FMQPGGRFMLSKLGLEDCLEGIDAQKATGM 115 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCcc----cccc--ccCchHHHHHHHcCCcchhhhccCcccccE
Confidence 4689999999999999999999999999999998643221 2333 6889999999999999988764 4566666
Q ss_pred EEEecCCcEEEeeCCCC------------CcH--------HHHhcCCCCeEEeCceEEEEEecCCe---EEEEEccCCce
Q psy9141 84 MIHGQNGKLREIPYDPV------------HNQ--------VELEQYPDCNIYFQHKLINLDVNSGN---VTFYRTEDNSE 140 (379)
Q Consensus 84 ~~~~~~g~~~~~~~~~~------------~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~---v~v~~~~~G~~ 140 (379)
.++. +|+....+|... ..+ +.+.+.++++++.+ +++++..+++. +++... +|++
T Consensus 116 ~v~~-~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~~~v~gV~~~~~-dG~~ 192 (514)
T PLN02985 116 AVYK-DGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEKGVIKGVTYKNS-AGEE 192 (514)
T ss_pred EEEE-CCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcCCEEEEEEEEcC-CCCE
Confidence 6665 444323333210 011 33445578999876 57776655553 444455 7776
Q ss_pred eEEEeecEEEecCCCChHHHHHhhhcCCCCccceeeeeeeEEEeeCCCCCccccccccceeeecCCCCeEEEEEecCCCc
Q psy9141 141 TKITDNQLIIGADGAYSGVRKCLMKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLKS 220 (379)
Q Consensus 141 ~~~i~adlVV~AdG~~S~vr~~l~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~ 220 (379)
.+ ++||+||+|||.+|.+|+++.......++. ..++...... ...|+..+.++++. ..+.+++...++
T Consensus 193 ~~-~~AdLVVgADG~~S~vR~~l~~~~~~~~s~---~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~l~ypi~~~~ 260 (514)
T PLN02985 193 TT-ALAPLTVVCDGCYSNLRRSLNDNNAEVLSY---QVGYISKNCR-------LEEPEKLHLIMSKP-SFTMLYQISSTD 260 (514)
T ss_pred EE-EECCEEEECCCCchHHHHHhccCCCcceeE---eEEEEEcccc-------CCCCCcceEEcCCC-ceEEEEEeCCCe
Confidence 56 789999999999999999984322111110 0111111000 01223334444333 345555554444
Q ss_pred eee---ecCCCCCC----Chhhhccc---cccccccc--------C--CcccCCCccccCCCCCccccCCcEEEe-eecc
Q psy9141 221 LMN---FPRADQGG----DKRDCLLH---EGTSRILV--------P--NMRLSNHLDRDQPCKPLLDFKNPIKIQ-SHAV 279 (379)
Q Consensus 221 ~~~---~p~~~~~~----~~~~~l~~---~g~~~~~~--------~--~~~~~~~~~~~~~~~~~~~~~~~~liG-Ah~~ 279 (379)
... +|.+.... +....+.+ +.....+. . ..... .....+...+ ...++++|| |+++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~l~~~f~~~~~~~~~~~~~--p~~~l~~~~~-~~~~vvLiGDAaH~ 337 (514)
T PLN02985 261 VRCVFEVLPDNIPSIANGEMSTFVKNTIAPQVPPKLRKIFLKGIDEGAHIKVV--PTKRMSATLS-DKKGVIVLGDAFNM 337 (514)
T ss_pred EEEEEEEeCCCCCCcChhhHHHHHHhccccccCHHHHHHHHhhcccccceeec--Cccccccccc-CCCCEEEEeccccc
Confidence 332 23222111 11111110 00000000 0 00000 0011111111 234799999 6666
Q ss_pred cCCCcchhhhhHHHHHHHHHHhhcc
Q psy9141 280 VNEFYKQESLIVASLCQEKIEKMFD 304 (379)
Q Consensus 280 ~~P~~GQG~n~gl~Da~~L~~~l~~ 304 (379)
+||++|||||+|++||..|+++|.+
T Consensus 338 ~~P~~GQGmn~AleDA~vLa~lL~~ 362 (514)
T PLN02985 338 RHPAIASGMMVLLSDILILRRLLQP 362 (514)
T ss_pred CCCCccccHhHHHHHHHHHHHHhhh
Confidence 6699999999999999999999964
No 41
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.96 E-value=3.3e-29 Score=240.96 Aligned_cols=151 Identities=30% Similarity=0.421 Sum_probs=106.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCce--eeE
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMR--ARM 84 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~--~~~ 84 (379)
+||+||||||+|+++|+.|+++|++|+||||++.+... ++++ .+++++.++|+++|+++.+...+.+.. ...
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~----~~~~--~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~ 75 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPK----GRGI--GLSPNSLRILQRLGLLDEILARGSPHEVMRIF 75 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCS----SSSE--EEEHHHHHHHHHTTEHHHHHHHSEEECEEEEE
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhccccccc----cccc--ccccccccccccccchhhhhhhcccccceeeE
Confidence 69999999999999999999999999999999877654 4554 688999999999999999887764332 233
Q ss_pred EEec-CCc-------EEEeeCC----CC----CcH-------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEc--cCCc
Q psy9141 85 IHGQ-NGK-------LREIPYD----PV----HNQ-------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRT--EDNS 139 (379)
Q Consensus 85 ~~~~-~g~-------~~~~~~~----~~----~~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~--~~G~ 139 (379)
++.. .+. .....+. .. ..+ ....+..++++++++++++++.+++++++.+. .+|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~ 155 (356)
T PF01494_consen 76 FYDGISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGE 155 (356)
T ss_dssp EEEETTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCE
T ss_pred eecccCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCc
Confidence 3332 010 0111111 00 011 12222346999999999999999988775543 2455
Q ss_pred eeEEEeecEEEecCCCChHHHHHhh
Q psy9141 140 ETKITDNQLIIGADGAYSGVRKCLM 164 (379)
Q Consensus 140 ~~~~i~adlVV~AdG~~S~vr~~l~ 164 (379)
..+ ++||+||+|||++|.+|+.+.
T Consensus 156 ~~~-i~adlvVgADG~~S~vR~~l~ 179 (356)
T PF01494_consen 156 EET-IEADLVVGADGAHSKVRKQLG 179 (356)
T ss_dssp EEE-EEESEEEE-SGTT-HHHHHTT
T ss_pred eeE-EEEeeeecccCcccchhhhcc
Confidence 556 999999999999999999983
No 42
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.96 E-value=4e-28 Score=237.63 Aligned_cols=318 Identities=17% Similarity=0.139 Sum_probs=183.6
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCC-CCCCcccccccCHHHHHHHHHCCChHHHHhC-CCCceee
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSG-LSEGKSINLALSVRGREALRRIGLEDKLLAH-GIPMRAR 83 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~-~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~-~~~~~~~ 83 (379)
++||+||||||+|+++|+.|++.|++|+|+||.+.+...+ ..+.+.+ .++++++++|+++|+++++... ..+....
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~--~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 82 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVY--AISPSSQAFLERLGVWQALDAARLAPVYDM 82 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceE--eecHHHHHHHHHcCchhhhhhhcCCcceEE
Confidence 5899999999999999999999999999999998764321 1234544 6899999999999999987543 3455555
Q ss_pred EEEecCCcEEEe-eC--CCC-----CcH--------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeec
Q psy9141 84 MIHGQNGKLREI-PY--DPV-----HNQ--------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQ 147 (379)
Q Consensus 84 ~~~~~~g~~~~~-~~--~~~-----~~~--------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~ad 147 (379)
.++........+ .+ ... ..+ ..+.+..+++++ ++++++++.+++++.+++. +|++ ++||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~-~g~~---~~a~ 157 (388)
T PRK07608 83 RVFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLA-DGQV---LRAD 157 (388)
T ss_pred EEEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEEC-CCCE---EEee
Confidence 555433211111 01 000 011 233444458988 9999999988888999888 8876 9999
Q ss_pred EEEecCCCChHHHHHh-hhcCCCCccceeeeeeeEEEeeCCCCCccccccccceeeecCCCCeEEEEEecCCCceee--e
Q psy9141 148 LIIGADGAYSGVRKCL-MKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLKSLMN--F 224 (379)
Q Consensus 148 lVV~AdG~~S~vr~~l-~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~--~ 224 (379)
+||+|||.+|.+|+.+ .......+.+..+.. .+..+. .. +.....++.+. ..+.+.|...+.+.. .
T Consensus 158 ~vI~adG~~S~vr~~~~~~~~~~~~~~~~~~~---~~~~~~-~~------~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~ 226 (388)
T PRK07608 158 LVVGADGAHSWVRSQAGIKAERRPYRQTGVVA---NFKAER-PH------RGTAYQWFRDD-GILALLPLPDGHVSMVWS 226 (388)
T ss_pred EEEEeCCCCchHHHhcCCCccccccCCEEEEE---EEEecC-CC------CCEEEEEecCC-CCEEEeECCCCCeEEEEE
Confidence 9999999999999988 444444444433211 111111 00 00111121111 122333433332211 1
Q ss_pred cCCC--------CCCChhhhcccccccccccCCcccC----CCccccCCCCCccccCCcEEEe-eecccCCCcchhhhhH
Q psy9141 225 PRAD--------QGGDKRDCLLHEGTSRILVPNMRLS----NHLDRDQPCKPLLDFKNPIKIQ-SHAVVNEFYKQESLIV 291 (379)
Q Consensus 225 p~~~--------~~~~~~~~l~~~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~liG-Ah~~~~P~~GQG~n~g 291 (379)
..+. ..++..+.+...... ....+... ...........|. ..+++++| |++.++|++|||+|+|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~rv~liGDAAh~~~P~~GqG~n~a 303 (388)
T PRK07608 227 ARTAHADELLALSPEALAARVERASGG--RLGRLECVTPAAGFPLRLQRVDRLV-APRVALVGDAAHLIHPLAGQGMNLG 303 (388)
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHH--hcCCceecCCcceeecchhhhhhhh-cCceEEEeccccccCCccccccchh
Confidence 1000 001111111110000 00111100 0011112233444 34899999 4444459999999999
Q ss_pred HHHHHHHHHhhcc-----------ccccccccc-------hhhhhheeeeEEeeecccccchhhHHHHHHhhhhc
Q psy9141 292 ASLCQEKIEKMFD-----------NTSTYKSRH-------INFIHRSYHLYTVDIGVHKVTESSILNLLLRGMKK 348 (379)
Q Consensus 292 l~Da~~L~~~l~~-----------~~~~~~~~~-------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~ 348 (379)
++|+..|+++|.. .++.|++++ +..++.+.++|..+.++. ...-|++++-+-+
T Consensus 304 i~da~~La~~L~~~~~~~~~~~~~~l~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~~~----~~~r~~~~~~~~~ 374 (388)
T PRK07608 304 LRDVAALADVLAGREPFRDLGDLRLLRRYERARREDILALQVATDGLQRLFALPGPLA----RWLRNAGMALVGA 374 (388)
T ss_pred HHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHH----HHHHHHHHHHHhh
Confidence 9999999999864 244566655 344444445676555432 3556666665544
No 43
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.95 E-value=3.4e-27 Score=233.14 Aligned_cols=147 Identities=23% Similarity=0.372 Sum_probs=108.1
Q ss_pred cEEEECCChHHHHHHHHHHhCC-CcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCC----Ccee
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQ-YEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGI----PMRA 82 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G-~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~----~~~~ 82 (379)
+|+||||||+||++|+.|+++| ++|+|+||.+..... |.++ .+.+++.++|+++|+.+.+...+. +...
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~----G~gi--~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~ 75 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEV----GAGV--SFGANAVRAIVGLGLGEAYTQVADSTPAPWQD 75 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCC----ccce--eeCccHHHHHHHcCChhHHHHHhcCCCccCcc
Confidence 6999999999999999999998 599999999876543 7776 689999999999999887765432 1121
Q ss_pred eEEEecCC---cEEEee----CCC-CCcH-----HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEE
Q psy9141 83 RMIHGQNG---KLREIP----YDP-VHNQ-----VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLI 149 (379)
Q Consensus 83 ~~~~~~~g---~~~~~~----~~~-~~~~-----~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlV 149 (379)
..+...++ ...... +.. ...+ ......++..++++++|++++.++++++++++ +|++ ++||+|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~-~g~~---~~ad~v 151 (414)
T TIGR03219 76 IWFEWRNGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEEVQVLFT-DGTE---YRCDLL 151 (414)
T ss_pred eeEEEEecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCcEEEEEc-CCCE---EEeeEE
Confidence 11111111 111111 111 0111 22233456778999999999998889999998 8887 999999
Q ss_pred EecCCCChHHHHHhh
Q psy9141 150 IGADGAYSGVRKCLM 164 (379)
Q Consensus 150 V~AdG~~S~vr~~l~ 164 (379)
|+|||.+|.+|+.+.
T Consensus 152 VgADG~~S~vR~~l~ 166 (414)
T TIGR03219 152 IGADGIKSALRDYVL 166 (414)
T ss_pred EECCCccHHHHHHhc
Confidence 999999999999884
No 44
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.94 E-value=2.6e-25 Score=226.89 Aligned_cols=283 Identities=16% Similarity=0.175 Sum_probs=159.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC-CCCCCCCCcccccccCHHHHHHHHHCCC--hHHHHhCCCCce
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI-RNSGLSEGKSINLALSVRGREALRRIGL--EDKLLAHGIPMR 81 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~-~~~~~~~g~~i~~al~~~~~~~l~~lGl--~~~l~~~~~~~~ 81 (379)
+..+|+||||||+||++|++|+++|++|+|+||++.. ...+. .++++ .++++++++|+++|+ .+++.+.+....
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~-~~~~I--~L~pngl~aLe~LGl~~~e~l~~~g~~~~ 156 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGK-YRGPI--QIQSNALAALEAIDIDVAEQVMEAGCITG 156 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccc-cCccc--ccCHHHHHHHHHcCcchHHHHHhhcCccc
Confidence 4589999999999999999999999999999998632 11110 12344 689999999999985 455555443221
Q ss_pred -ee-EEEec-CCcE-EEee-------CCCC----CcH----HHHh-cCCCCeEEeCceEEEEEecCCeEEEEEccCCcee
Q psy9141 82 -AR-MIHGQ-NGKL-REIP-------YDPV----HNQ----VELE-QYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSET 141 (379)
Q Consensus 82 -~~-~~~~~-~g~~-~~~~-------~~~~----~~~----~~~~-~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~ 141 (379)
.. .+.+. .|.. ..++ ++.. ..+ ..+. ......++++++|++++.+++++++++. +|++
T Consensus 157 ~~i~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg~~~i~~g~~V~~I~~~~d~VtV~~~-dG~t- 234 (668)
T PLN02927 157 DRINGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGEDVIRNESNVVDFEDSGDKVTVVLE-NGQR- 234 (668)
T ss_pred ceeeeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCCCCEEEcCCEEEEEEEeCCEEEEEEC-CCCE-
Confidence 11 11121 2221 1111 1111 122 2222 2223347889999999999999999998 8877
Q ss_pred EEEeecEEEecCCCChHHHHHhhhcCCCCccceeeeeeeEEEeeCCCCCccccccccceeeecCCCCeEEEEEecCCCce
Q psy9141 142 KITDNQLIIGADGAYSGVRKCLMKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLKSL 221 (379)
Q Consensus 142 ~~i~adlVV~AdG~~S~vr~~l~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~ 221 (379)
+++|+||+|||.+|.+|+.+.+.....|.......+.... .|. . +.......+. .....++.++...+.+
T Consensus 235 --i~aDlVVGADG~~S~vR~~l~g~~~~~~sG~~~~rgi~~~-~p~---~---~~~~~~~~~~-G~~~~~v~~~v~~g~~ 304 (668)
T PLN02927 235 --YEGDLLVGADGIWSKVRNNLFGRSEATYSGYTCYTGIADF-IPA---D---IESVGYRVFL-GHKQYFVSSDVGGGKM 304 (668)
T ss_pred --EEcCEEEECCCCCcHHHHHhcCCCCCcccceEEEEEEcCC-Ccc---c---ccccceEEEE-cCCeEEEEEcCCCCeE
Confidence 9999999999999999999965544455543322222211 111 0 0000011111 1212333333333322
Q ss_pred ee--e-cCC----CCCCChhhhcccc--ccccc---ccCCcccC----CCccccCCCCCccccCCcEEEe--eecccCCC
Q psy9141 222 MN--F-PRA----DQGGDKRDCLLHE--GTSRI---LVPNMRLS----NHLDRDQPCKPLLDFKNPIKIQ--SHAVVNEF 283 (379)
Q Consensus 222 ~~--~-p~~----~~~~~~~~~l~~~--g~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~liG--Ah~~~~P~ 283 (379)
.+ + +.. .......+.+.+. +|... +....... .......+...|. ..+++|+| ||+|+ |+
T Consensus 305 ~~~~f~~~p~~~~~~~~~~~e~L~~~f~~w~~~v~elI~~t~~~~i~~~~iyd~~p~~~W~-~grVvLiGDAAH~~~-P~ 382 (668)
T PLN02927 305 QWYAFHEEPAGGADAPNGMKKRLFEIFDGWCDNVLDLLHATEEDAILRRDIYDRSPGFTWG-KGRVTLLGDSIHAMQ-PN 382 (668)
T ss_pred EEEEEEECCccccccchhHHHHHHHHhccCCHHHHHHHHhCccccceeeeEEeccCCCccc-cCcEEEEcCccCCCC-Cc
Confidence 21 1 111 0111112222111 22111 11111000 0011113334565 45899999 77765 99
Q ss_pred cchhhhhHHHHHHHHHHhhcc
Q psy9141 284 YKQESLIVASLCQEKIEKMFD 304 (379)
Q Consensus 284 ~GQG~n~gl~Da~~L~~~l~~ 304 (379)
.|||+|+|++|+..|+.+|.+
T Consensus 383 ~GqG~n~AieDa~~La~~L~~ 403 (668)
T PLN02927 383 MGQGGCMAIEDSFQLALELDE 403 (668)
T ss_pred cccchHHHHHHHHHHHHHHHH
Confidence 999999999999999999865
No 45
>KOG3855|consensus
Probab=99.93 E-value=1.6e-26 Score=216.00 Aligned_cols=318 Identities=18% Similarity=0.180 Sum_probs=212.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHhC----CCcEEEEccCCCCC--C---CCCCCCcccccccCHHHHHHHHHCCChHHHHh
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKN----QYEVNLYEAREDIR--N---SGLSEGKSINLALSVRGREALRRIGLEDKLLA 75 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~----G~~V~viE~~~~~~--~---~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~ 75 (379)
..|||+||||||+|+++|..|... .++|.++|....+. . ...+..|.. .+++.+...++.+|.|+.+..
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvs--s~s~~s~~~fk~~~awd~i~~ 112 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVS--SISPASISLFKSIGAWDHIFH 112 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceee--cCCcchHHHHHhcCHHHHhhh
Confidence 368999999999999999999865 46999999884332 1 134556654 689999999999999999876
Q ss_pred C-CCCceeeEEEecCCcEEEeeCCCC---------C-c---H------HHHhcCCCCeEEeCceEEEEEec------C-C
Q psy9141 76 H-GIPMRARMIHGQNGKLREIPYDPV---------H-N---Q------VELEQYPDCNIYFQHKLINLDVN------S-G 128 (379)
Q Consensus 76 ~-~~~~~~~~~~~~~g~~~~~~~~~~---------~-~---~------~~~~~~~gv~i~~~~~v~~i~~~------~-~ 128 (379)
. ..+..++.+++..... .+.|+.. . + + ...++.++++|....++.++... + +
T Consensus 113 ~R~~~~~~~~v~Ds~s~a-~I~~~~d~~~~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~ 191 (481)
T KOG3855|consen 113 DRYQKFSRMLVWDSCSAA-LILFDHDNVGIDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNG 191 (481)
T ss_pred hccccccceeeecccchh-hhhhccccccccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCCc
Confidence 5 7788888888865432 1112111 0 1 1 23356689999999998887652 1 2
Q ss_pred -eEEEEEccCCceeEEEeecEEEecCCCChHHHHHh-hhcCCCCccceeeeee------------eEEEeeCCCCCcccc
Q psy9141 129 -NVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCL-MKQSMFNYSQTYIEHG------------YMELCIPPSEDNEVW 194 (379)
Q Consensus 129 -~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr~~l-~~~~~~~~~~~~i~~~------------~~~~~~p~~~~~~~~ 194 (379)
...+++. ||.. +.+|++|+|||.+|.+|+.. +......|.+..+... .|++|.| .|+++
T Consensus 192 ~~~~i~l~-dg~~---~~~~LLigAdg~Ns~vR~~snid~~~~ny~~havVAtl~l~~~~~~~~~AwQRFlP---~GpiA 264 (481)
T KOG3855|consen 192 MWFHITLT-DGIN---FATDLLIGADGFNSVVRKASNIDVASWNYDQHAVVATLKLEEEAILNGVAWQRFLP---TGPIA 264 (481)
T ss_pred ceEEEEec-cCce---eeeceeeccccccchhhhhcCCCcccccccceeeeEEEEecccccccchhHHhcCC---CCcee
Confidence 3457777 8887 99999999999999999998 8888888888765111 1345666 59999
Q ss_pred ccccceeeecCCCCeEEEE--EecCCCceeeecCCCCCCChhhhccccccccccc------------------------C
Q psy9141 195 LYKNRLLSSVPEVRKRISL--RAQSLKSLMNFPRADQGGDKRDCLLHEGTSRILV------------------------P 248 (379)
Q Consensus 195 ~~p~~~~~~~p~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~l~~~g~~~~~~------------------------~ 248 (379)
++|+ ++....++| .+.....+..+|.|.|.+.++..|..+....... .
T Consensus 265 llpl------~d~~s~LvWSts~~~a~~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~~al~~~~~~~~sl~~~~k~~~ 338 (481)
T KOG3855|consen 265 LLPL------SDTLSSLVWSTSPENASILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFALNGRAQLSESLLNTSKRLA 338 (481)
T ss_pred eccc------ccccccceeecCHHHHHHHhcCCchhHHHHHHHHHhccCCCchhhhchhhhhcchhhccHHHHhccCccc
Confidence 9995 444334444 4555667778999988888877765441100000 0
Q ss_pred CcccCC------------CccccCCCCCccccCCcEEEe--eecccCCCcchhhhhHHHHHHHHHHhhcc----------
Q psy9141 249 NMRLSN------------HLDRDQPCKPLLDFKNPIKIQ--SHAVVNEFYKQESLIVASLCQEKIEKMFD---------- 304 (379)
Q Consensus 249 ~~~~~~------------~~~~~~~~~~~~~~~~~~liG--Ah~~~~P~~GQG~n~gl~Da~~L~~~l~~---------- 304 (379)
++..++ ++.+..+...++ ..|++++| ||.+ ||.+|||.|+|..|+..|++.|.+
T Consensus 339 ~~q~pp~V~~v~dksRa~FPLgf~ha~~yV-~~~~Al~GDAAHr~-hPlAgqGvNlg~~dV~~L~~sL~~ai~~g~DlgS 416 (481)
T KOG3855|consen 339 NQQYPPSVFEVGDKSRAQFPLGFGHADEYV-TDRVALIGDAAHRV-HPLAGQGVNLGFSDVKILVDSLSEAIVSGLDLGS 416 (481)
T ss_pred ccccCCeEEEecccceeecccccccHHHhc-CCchhhhcchhhcc-ccCcccccCCChhhHHHHHHHHHHHHHhcccccc
Confidence 000000 011111111111 11899999 6664 599999999999999999998876
Q ss_pred --ccccccccc-------hhhhhheeeeEEeeecccccchhhHHH
Q psy9141 305 --NTSTYKSRH-------INFIHRSYHLYTVDIGVHKVTESSILN 340 (379)
Q Consensus 305 --~~~~~~~~~-------~~~~~~~~~~~t~~~~~~~~~~~~~~~ 340 (379)
.+..|.++. ...++.+.+||..+.||-=+-..+=+|
T Consensus 417 ~~~L~~y~~~~~~~N~~ll~~vdkl~klY~t~~p~vV~~rt~GL~ 461 (481)
T KOG3855|consen 417 VEHLEPYERERLQHNYVLLGAVDKLHKLYATSAPPVVLLRTFGLQ 461 (481)
T ss_pred hhhhhHHHHHHhhhcchHHHHHHHHHHHHhccCCcEEEEeccchh
Confidence 333455443 445555666888877776554444333
No 46
>PRK11445 putative oxidoreductase; Provisional
Probab=99.91 E-value=9.1e-23 Score=197.23 Aligned_cols=154 Identities=19% Similarity=0.164 Sum_probs=101.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCC-CCceeeEE
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHG-IPMRARMI 85 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~-~~~~~~~~ 85 (379)
+||+||||||+|+++|+.|++. ++|+|+|+.+.....+.....+. .+++++.++|+++|++....... ........
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~--~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~ 78 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGG--LLAPDAQKSFAKDGLTLPKDVIANPQIFAVKT 78 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcC--ccCHHHHHHHHHcCCCCCcceeeccccceeeE
Confidence 6999999999999999999999 99999999986532221111222 58999999999999863211100 00000111
Q ss_pred EecCCcE-EEeeCCC-CCcH------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141 86 HGQNGKL-REIPYDP-VHNQ------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS 157 (379)
Q Consensus 86 ~~~~g~~-~~~~~~~-~~~~------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S 157 (379)
.+..... ....... ...+ .......++++++++.+++++.+++++.+++..+|+..+ ++||+||+|||++|
T Consensus 79 ~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~-i~a~~vV~AdG~~S 157 (351)
T PRK11445 79 IDLANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQH-ITARYLVGADGANS 157 (351)
T ss_pred ecccccchhhcCCCcccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEE-EEeCEEEECCCCCc
Confidence 1111100 0000010 1122 111224689999999999999888888887532676445 99999999999999
Q ss_pred HHHHHhh
Q psy9141 158 GVRKCLM 164 (379)
Q Consensus 158 ~vr~~l~ 164 (379)
.+|+++.
T Consensus 158 ~vr~~l~ 164 (351)
T PRK11445 158 MVRRHLY 164 (351)
T ss_pred HHhHHhc
Confidence 9999884
No 47
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.91 E-value=2.3e-22 Score=188.85 Aligned_cols=143 Identities=25% Similarity=0.252 Sum_probs=98.1
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH 86 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 86 (379)
|||+||||||+|+++|+.|++.|++|+|+||++.+... ..+. .+.+.+.+.+...+... ........++
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~----~~~~--~~~~~~~~~l~~~~~~~-----~~~~~~~~~~ 69 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYK----PCGG--ALSPRVLEELDLPLELI-----VNLVRGARFF 69 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcc----cccC--ccCHhHHHHhcCCchhh-----hhheeeEEEE
Confidence 69999999999999999999999999999999866432 2222 46788877776654311 1122333344
Q ss_pred ecCCcEEEeeCCCC----CcH-------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCC
Q psy9141 87 GQNGKLREIPYDPV----HNQ-------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGA 155 (379)
Q Consensus 87 ~~~g~~~~~~~~~~----~~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~ 155 (379)
...+.....+.... ..+ .......+++++++++++++..+++++++.+..++.+ ++||+||+|||.
T Consensus 70 ~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~a~~vv~a~G~ 146 (295)
T TIGR02032 70 SPNGDSVEIPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGT---VTAKIVIGADGS 146 (295)
T ss_pred cCCCcEEEeccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEE---EEeCEEEECCCc
Confidence 43443222211110 011 2222346899999999999998888887766513344 999999999999
Q ss_pred ChHHHHHh
Q psy9141 156 YSGVRKCL 163 (379)
Q Consensus 156 ~S~vr~~l 163 (379)
+|.+|+.+
T Consensus 147 ~s~~~~~~ 154 (295)
T TIGR02032 147 RSIVAKKL 154 (295)
T ss_pred chHHHHhc
Confidence 99999977
No 48
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.88 E-value=1.1e-20 Score=185.08 Aligned_cols=143 Identities=20% Similarity=0.244 Sum_probs=99.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH 86 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 86 (379)
|||+||||||+|+++|+.|++.|++|+|+|+.. .. ...+|.+ +++ +.++.+|+.+++... .+....++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~-~~--~~~cg~~----i~~---~~l~~l~i~~~~~~~--~~~~~~~~ 68 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERAL-SN--IKPCGGA----IPP---CLIEEFDIPDSLIDR--RVTQMRMI 68 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCC-CC--cCcCcCC----cCH---hhhhhcCCchHHHhh--hcceeEEE
Confidence 699999999999999999999999999999982 11 1223543 344 467888887776543 45556666
Q ss_pred ecCCcEEEeeCC----C--CCcH-------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEcc-----CCceeEEEeecE
Q psy9141 87 GQNGKLREIPYD----P--VHNQ-------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTE-----DNSETKITDNQL 148 (379)
Q Consensus 87 ~~~g~~~~~~~~----~--~~~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~-----~G~~~~~i~adl 148 (379)
.+++........ . ...+ ...+...|++++.+ +|+++..+++++.+++.+ +|+..+ ++||+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~~~-i~a~~ 146 (388)
T TIGR02023 69 SPSRVPIKVTIPSEDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEKGS-VEADV 146 (388)
T ss_pred cCCCceeeeccCCCCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcceE-EEeCE
Confidence 655432222111 1 0122 12223458999765 699998888888777651 233335 99999
Q ss_pred EEecCCCChHHHHHh
Q psy9141 149 IIGADGAYSGVRKCL 163 (379)
Q Consensus 149 VV~AdG~~S~vr~~l 163 (379)
||+|||.+|.+|+.+
T Consensus 147 VI~AdG~~S~v~r~l 161 (388)
T TIGR02023 147 VIGADGANSPVAKEL 161 (388)
T ss_pred EEECCCCCcHHHHHc
Confidence 999999999999987
No 49
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.85 E-value=9.2e-20 Score=181.16 Aligned_cols=144 Identities=22% Similarity=0.243 Sum_probs=94.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI 85 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~ 85 (379)
++||+||||||+|+++|+.|+++|++|+|+||.+.. +..+|.++ + ...++++|+++.+... .+..+.+
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~---~k~cgg~i----~---~~~l~~lgl~~~~~~~--~i~~~~~ 106 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDN---AKPCGGAI----P---LCMVGEFDLPLDIIDR--KVTKMKM 106 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC---CCCccccc----c---HhHHhhhcCcHHHHHH--HhhhheE
Confidence 589999999999999999999999999999998532 22345543 2 3667888888766542 3334444
Q ss_pred EecCCcEEEeeC-----CCC--CcH-------HHHhcCCCCeEEeCceEEEEEec---CCeEEEEEccC------CceeE
Q psy9141 86 HGQNGKLREIPY-----DPV--HNQ-------VELEQYPDCNIYFQHKLINLDVN---SGNVTFYRTED------NSETK 142 (379)
Q Consensus 86 ~~~~g~~~~~~~-----~~~--~~~-------~~~~~~~gv~i~~~~~v~~i~~~---~~~v~v~~~~~------G~~~~ 142 (379)
+.+.+....+.. ... ..+ ...+...|++++.+ .+++++.. ++.+.+++... |+..+
T Consensus 107 ~~p~~~~v~~~~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~ 185 (450)
T PLN00093 107 ISPSNVAVDIGKTLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKT 185 (450)
T ss_pred ecCCceEEEecccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccE
Confidence 443332221110 010 122 12233468999876 57777642 24555554311 44344
Q ss_pred EEeecEEEecCCCChHHHHHh
Q psy9141 143 ITDNQLIIGADGAYSGVRKCL 163 (379)
Q Consensus 143 ~i~adlVV~AdG~~S~vr~~l 163 (379)
++||+||+|||++|.+|+.+
T Consensus 186 -v~a~~VIgADG~~S~vrr~l 205 (450)
T PLN00093 186 -LEVDAVIGADGANSRVAKDI 205 (450)
T ss_pred -EEeCEEEEcCCcchHHHHHh
Confidence 99999999999999999998
No 50
>KOG1298|consensus
Probab=99.85 E-value=5.3e-20 Score=170.84 Aligned_cols=279 Identities=19% Similarity=0.201 Sum_probs=173.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhC-CCCceee
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAH-GIPMRAR 83 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~-~~~~~~~ 83 (379)
..+||+|||||.+|.++|+.|++.|.+|+||||+-... ...-|. .++|.+...|.++|+.+.++.. +....+.
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EP--dRivGE----llQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy 117 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEP--DRIVGE----LLQPGGYLALSKLGLEDCVEGIDAQRVTGY 117 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccc--hHHHHH----hcCcchhHHHHHhCHHHHhhcccceEeeee
Confidence 35899999999999999999999999999999985322 111232 5889999999999998887765 6777788
Q ss_pred EEEecCCcEEEeeCCCCC------------cH------HHHhcCCCCeEEeCceEEEEEecCC---eEEEEEccCCceeE
Q psy9141 84 MIHGQNGKLREIPYDPVH------------NQ------VELEQYPDCNIYFQHKLINLDVNSG---NVTFYRTEDNSETK 142 (379)
Q Consensus 84 ~~~~~~g~~~~~~~~~~~------------~~------~~~~~~~gv~i~~~~~v~~i~~~~~---~v~v~~~~~G~~~~ 142 (379)
.++. +|+...++|.... ++ +.....+|+++..++ |+++..+++ +|+.... .|++.+
T Consensus 118 ~ifk-~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeGt-V~sLlee~gvvkGV~yk~k-~gee~~ 194 (509)
T KOG1298|consen 118 AIFK-DGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEGT-VKSLLEEEGVVKGVTYKNK-EGEEVE 194 (509)
T ss_pred EEEe-CCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeeee-HHHHHhccCeEEeEEEecC-CCceEE
Confidence 7776 5555555554321 11 455677999988774 666655555 4455555 677777
Q ss_pred EEeecEEEecCCCChHHHHHhhhcCCCCccceeeeeeeEEEeeCCCCCccccccccceeeecCCCCeEEEEEecCCCce-
Q psy9141 143 ITDNQLIIGADGAYSGVRKCLMKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVPEVRKRISLRAQSLKSL- 221 (379)
Q Consensus 143 ~i~adlVV~AdG~~S~vr~~l~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~- 221 (379)
..|.+.|.|||-+|.+|+.+.+.........++......+..| .|+..|..+.+. ..+.+|+....+.
T Consensus 195 -~~ApLTvVCDGcfSnlRrsL~~~~v~~V~S~fVG~vl~N~~l~---------~p~hghvIL~~p-spil~Y~ISStEvR 263 (509)
T KOG1298|consen 195 -AFAPLTVVCDGCFSNLRRSLCDPKVEEVPSYFVGLVLKNCRLP---------APNHGHVILSKP-SPILVYQISSTEVR 263 (509)
T ss_pred -EecceEEEecchhHHHHHHhcCCcccccchheeeeeecCCCCC---------CCCcceEEecCC-CcEEEEEecchheE
Confidence 8999999999999999999954333323333322211122222 233444444433 3455665543322
Q ss_pred --eeecCCCCCCChh----hhcccccccccccCCcccC------CCccccCC---C-CCccccCCcEEEe-eecccCCCc
Q psy9141 222 --MNFPRADQGGDKR----DCLLHEGTSRILVPNMRLS------NHLDRDQP---C-KPLLDFKNPIKIQ-SHAVVNEFY 284 (379)
Q Consensus 222 --~~~p~~~~~~~~~----~~l~~~g~~~~~~~~~~~~------~~~~~~~~---~-~~~~~~~~~~liG-Ah~~~~P~~ 284 (379)
..+|....+...+ ..+.+. ....+....+.+ +...+.-| + ......++..++| |-.|-||.+
T Consensus 264 cl~~v~g~~~Psi~~gem~~~mk~~-v~PqiP~~lR~~F~~av~~g~irsmpn~~mpa~~~~~~G~illGDAfNMRHPlt 342 (509)
T KOG1298|consen 264 CLVDVPGQKLPSIANGEMATYMKES-VAPQIPEKLRESFLEAVDEGNIRSMPNSSMPATLNDKKGVILLGDAFNMRHPLT 342 (509)
T ss_pred EEEecCcccCCcccchhHHHHHHHh-hCcCCCHHHHHHHHHHhhccchhcCccccCCCCcCCCCceEEEcccccccCCcc
Confidence 2344443333333 111111 111111111111 00111111 1 1122344789999 999988999
Q ss_pred chhhhhHHHHHHHHHHhhcc
Q psy9141 285 KQESLIVASLCQEKIEKMFD 304 (379)
Q Consensus 285 GQG~n~gl~Da~~L~~~l~~ 304 (379)
|-||..++.|+..|-+.|..
T Consensus 343 ggGMtV~l~Di~lLr~ll~p 362 (509)
T KOG1298|consen 343 GGGMTVALSDIVLLRRLLKP 362 (509)
T ss_pred CCceEeehhHHHHHHHHhcc
Confidence 99999999999999888865
No 51
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.85 E-value=2.2e-20 Score=196.97 Aligned_cols=133 Identities=17% Similarity=0.172 Sum_probs=90.0
Q ss_pred cEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCC--ChHHHHhCCCCceee
Q psy9141 8 SVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIG--LEDKLLAHGIPMRAR 83 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lG--l~~~l~~~~~~~~~~ 83 (379)
+|+||||||+||++|+.|++. |++|+|+||++..... |.++ .+++++.+.|+.++ +...+..........
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~----G~Gi--~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~ 75 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTF----GWGV--VFSDATLGNLRAADPVSAAAIGDAFNHWDDI 75 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCccc----Ccce--EccHHHHHHHHhcCHHHHHHHHHhcccCCce
Confidence 699999999999999999998 8999999999865443 6665 58899999998876 333333332233333
Q ss_pred EEEecCCcEEE---eeCCCCCcH-------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecC
Q psy9141 84 MIHGQNGKLRE---IPYDPVHNQ-------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGAD 153 (379)
Q Consensus 84 ~~~~~~g~~~~---~~~~~~~~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~Ad 153 (379)
.+.. .+.... ..|... .+ .......+++++++++|++++. .. .++|+||+||
T Consensus 76 ~~~~-~g~~~~~~g~~~~~i-~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~-------------~~---~~~D~VVgAD 137 (765)
T PRK08255 76 DVHF-KGRRIRSGGHGFAGI-GRKRLLNILQARCEELGVKLVFETEVPDDQA-------------LA---ADADLVIASD 137 (765)
T ss_pred EEEE-CCEEEEECCeeEecC-CHHHHHHHHHHHHHHcCCEEEeCCccCchhh-------------hh---cCCCEEEEcC
Confidence 3332 222211 112111 22 1222335899999998876531 11 5789999999
Q ss_pred CCChHHHHHhh
Q psy9141 154 GAYSGVRKCLM 164 (379)
Q Consensus 154 G~~S~vr~~l~ 164 (379)
|.+|.+|+.+.
T Consensus 138 G~~S~vR~~~~ 148 (765)
T PRK08255 138 GLNSRIRTRYA 148 (765)
T ss_pred CCCHHHHHHHH
Confidence 99999999873
No 52
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.82 E-value=1.2e-18 Score=171.18 Aligned_cols=147 Identities=22% Similarity=0.191 Sum_probs=99.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeE
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARM 84 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~ 84 (379)
.+|||+||||||||+++|+.|++.|++|+|+||...+.....+ +. .+.+...+.+......+ + ...+....
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~-~~----~~~~~~l~~l~~~~~~~-i---~~~v~~~~ 72 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC-GG----GLSPRALEELIPDFDEE-I---ERKVTGAR 72 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc-cc----eechhhHHHhCCCcchh-h---heeeeeeE
Confidence 3589999999999999999999999999999999988754322 22 24555544443322111 1 22333334
Q ss_pred EEecCCcEEEeeCCCC----CcH-------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecC
Q psy9141 85 IHGQNGKLREIPYDPV----HNQ-------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGAD 153 (379)
Q Consensus 85 ~~~~~g~~~~~~~~~~----~~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~Ad 153 (379)
++.. +....+..... ..+ ...++..|++++.+++++++..+++++.+... .|. .+ ++|++||+||
T Consensus 73 ~~~~-~~~~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~-~~~-~e-~~a~~vI~Ad 148 (396)
T COG0644 73 IYFP-GEKVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVR-AGD-DE-VRAKVVIDAD 148 (396)
T ss_pred EEec-CCceEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEE-cCC-EE-EEcCEEEECC
Confidence 4433 22222222111 111 33455679999999999999999887776555 442 33 9999999999
Q ss_pred CCChHHHHHhh
Q psy9141 154 GAYSGVRKCLM 164 (379)
Q Consensus 154 G~~S~vr~~l~ 164 (379)
|.+|.+++.+.
T Consensus 149 G~~s~l~~~lg 159 (396)
T COG0644 149 GVNSALARKLG 159 (396)
T ss_pred CcchHHHHHhC
Confidence 99999999983
No 53
>PRK10015 oxidoreductase; Provisional
Probab=99.81 E-value=3.1e-18 Score=169.73 Aligned_cols=151 Identities=17% Similarity=0.241 Sum_probs=91.5
Q ss_pred CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHH-HHhCCCC
Q psy9141 1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDK-LLAHGIP 79 (379)
Q Consensus 1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~-l~~~~~~ 79 (379)
|+ +.+|||+||||||+|+++|+.|++.|++|+||||.+.+.....+.++ ++..+.+.+-. +++.. ..+....
T Consensus 1 m~-~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~-----i~~~~~~~l~~-~~~~~~~i~~~~~ 73 (429)
T PRK10015 1 MS-DDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGR-----LYAHTLEAIIP-GFAASAPVERKVT 73 (429)
T ss_pred CC-ccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCce-----eecccHHHHcc-cccccCCcccccc
Confidence 54 34699999999999999999999999999999999876543222232 22222222210 22110 0001111
Q ss_pred ceeeEEEecCCcEEEeeCC-----------CCCcH-------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCcee
Q psy9141 80 MRARMIHGQNGKLREIPYD-----------PVHNQ-------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSET 141 (379)
Q Consensus 80 ~~~~~~~~~~g~~~~~~~~-----------~~~~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~ 141 (379)
.....+...++. ..+++. +...+ ...++..|++++.+++|+++..+++++..... ++.+
T Consensus 74 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~-~~~~- 150 (429)
T PRK10015 74 REKISFLTEESA-VTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQA-GDDI- 150 (429)
T ss_pred ceeEEEEeCCCc-eEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEe-CCeE-
Confidence 111222222221 111111 00111 22233469999999999999887777664444 4545
Q ss_pred EEEeecEEEecCCCChHHHHHh
Q psy9141 142 KITDNQLIIGADGAYSGVRKCL 163 (379)
Q Consensus 142 ~~i~adlVV~AdG~~S~vr~~l 163 (379)
++||+||+|||.+|.+++.+
T Consensus 151 --i~A~~VI~AdG~~s~v~~~l 170 (429)
T PRK10015 151 --LEANVVILADGVNSMLGRSL 170 (429)
T ss_pred --EECCEEEEccCcchhhhccc
Confidence 99999999999999999887
No 54
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.81 E-value=3.1e-18 Score=168.31 Aligned_cols=143 Identities=19% Similarity=0.224 Sum_probs=92.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH 86 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 86 (379)
+||+||||||+|+++|+.|+++|++|+|+||.+... ..++.+ ++ ...|+++|+++.+... .+....++
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~---~~cg~~----i~---~~~l~~~g~~~~~~~~--~i~~~~~~ 68 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNA---KPCGGA----IP---LCMVDEFALPRDIIDR--RVTKMKMI 68 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCC---CCcccc----cc---HhhHhhccCchhHHHh--hhceeEEe
Confidence 589999999999999999999999999999976432 223443 33 3567888887665542 33344444
Q ss_pred ecCCcEEEee-------CCCCCcH-------HHHhcCCCCeEEeCceEEEEEe---cCCeEEEEEc-cC-----CceeEE
Q psy9141 87 GQNGKLREIP-------YDPVHNQ-------VELEQYPDCNIYFQHKLINLDV---NSGNVTFYRT-ED-----NSETKI 143 (379)
Q Consensus 87 ~~~g~~~~~~-------~~~~~~~-------~~~~~~~gv~i~~~~~v~~i~~---~~~~v~v~~~-~~-----G~~~~~ 143 (379)
.+.+....+. +.....+ ...+...|++++.++ +++++. .++.+.+++. .+ |+..+
T Consensus 69 ~p~~~~~~~~~~~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~- 146 (398)
T TIGR02028 69 SPSNIAVDIGRTLKEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCT- 146 (398)
T ss_pred cCCceEEEeccCCCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccE-
Confidence 4333221111 1001122 222344699998885 777753 2344445431 02 44345
Q ss_pred EeecEEEecCCCChHHHHHh
Q psy9141 144 TDNQLIIGADGAYSGVRKCL 163 (379)
Q Consensus 144 i~adlVV~AdG~~S~vr~~l 163 (379)
++|++||+|||.+|.+|+.+
T Consensus 147 i~a~~VIgADG~~S~v~~~~ 166 (398)
T TIGR02028 147 LEVDAVIGADGANSRVAKEI 166 (398)
T ss_pred EEeCEEEECCCcchHHHHHh
Confidence 99999999999999999998
No 55
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.80 E-value=4.1e-18 Score=168.89 Aligned_cols=146 Identities=20% Similarity=0.242 Sum_probs=92.1
Q ss_pred CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCc
Q psy9141 1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPM 80 (379)
Q Consensus 1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~ 80 (379)
|+ ..+|||+||||||+|+++|+.|+++|++|+|+||.+.+...... |.. +...+. +.+ ++.+... .++
T Consensus 1 m~-~~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~-gg~----l~~~~~---e~l--~~~~~~~-~~~ 68 (428)
T PRK10157 1 MS-EDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVT-GGR----LYAHSL---EHI--IPGFADS-APV 68 (428)
T ss_pred CC-cccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccc-cce----echhhH---HHH--hhhhhhc-Ccc
Confidence 54 24699999999999999999999999999999999876543222 221 223322 222 1221111 111
Q ss_pred ------eeeEEEecCCcEEEeeCC-----------CCCcH-------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEcc
Q psy9141 81 ------RARMIHGQNGKLREIPYD-----------PVHNQ-------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTE 136 (379)
Q Consensus 81 ------~~~~~~~~~g~~~~~~~~-----------~~~~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~ 136 (379)
....+...++.. .+++. +...+ ...++..|++++++++|++++.+++.+.....
T Consensus 69 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~- 146 (428)
T PRK10157 69 ERLITHEKLAFMTEKSAM-TMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEA- 146 (428)
T ss_pred cceeeeeeEEEEcCCCce-eeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEc-
Confidence 112222222221 11110 00011 22234469999999999999887777654455
Q ss_pred CCceeEEEeecEEEecCCCChHHHHHh
Q psy9141 137 DNSETKITDNQLIIGADGAYSGVRKCL 163 (379)
Q Consensus 137 ~G~~~~~i~adlVV~AdG~~S~vr~~l 163 (379)
+|.+ ++|++||+|||.+|.+++.+
T Consensus 147 ~g~~---i~A~~VI~A~G~~s~l~~~l 170 (428)
T PRK10157 147 DGDV---IEAKTVILADGVNSILAEKL 170 (428)
T ss_pred CCcE---EECCEEEEEeCCCHHHHHHc
Confidence 6666 99999999999999999887
No 56
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.74 E-value=6.3e-17 Score=158.51 Aligned_cols=135 Identities=19% Similarity=0.206 Sum_probs=81.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCcee-eEEE
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRA-RMIH 86 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~-~~~~ 86 (379)
||+||||||+|+++|+.|++.|++|+|||+.+.... ... ..++.. .++++++. .+... .+.. ..+.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~-----~~~--~~~~~~---~~~~~~~~-~~~~~--~~~~~~~~~ 67 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPG-----NHT--YGVWDD---DLSDLGLA-DCVEH--VWPDVYEYR 67 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCC-----Ccc--ccccHh---hhhhhchh-hHHhh--cCCCceEEe
Confidence 899999999999999999999999999999875421 111 123332 23444532 22221 1122 1112
Q ss_pred ecCCcE-EEeeCCCCCcH-------HHHhcCCCCeEEeCceEEEEEec-CCeEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141 87 GQNGKL-REIPYDPVHNQ-------VELEQYPDCNIYFQHKLINLDVN-SGNVTFYRTEDNSETKITDNQLIIGADGAYS 157 (379)
Q Consensus 87 ~~~g~~-~~~~~~~~~~~-------~~~~~~~gv~i~~~~~v~~i~~~-~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S 157 (379)
...... ...++...... ..+. ..+++++ .++|++++.+ ++.+.+++. +|++ ++|++||+|||.+|
T Consensus 68 ~~~~~~~~~~~~~~i~~~~l~~~l~~~~~-~~gv~~~-~~~v~~i~~~~~~~~~v~~~-~g~~---~~a~~VI~A~G~~s 141 (388)
T TIGR01790 68 FPKQPRKLGTAYGSVDSTRLHEELLQKCP-EGGVLWL-ERKAIHAEADGVALSTVYCA-GGQR---IQARLVIDARGFGP 141 (388)
T ss_pred cCCcchhcCCceeEEcHHHHHHHHHHHHH-hcCcEEE-ccEEEEEEecCCceeEEEeC-CCCE---EEeCEEEECCCCch
Confidence 111111 11111111111 2223 3478886 5688888877 567778887 8866 99999999999999
Q ss_pred HHHH
Q psy9141 158 GVRK 161 (379)
Q Consensus 158 ~vr~ 161 (379)
.+++
T Consensus 142 ~~~~ 145 (388)
T TIGR01790 142 LVQY 145 (388)
T ss_pred hccc
Confidence 6654
No 57
>PLN02463 lycopene beta cyclase
Probab=99.69 E-value=1.3e-15 Score=151.11 Aligned_cols=139 Identities=18% Similarity=0.177 Sum_probs=92.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeE
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARM 84 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~ 84 (379)
..+||+||||||+|+++|+.|++.|++|+|+|+.+..... ... .. -.+.++.+|+.+.+... .+.. .
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p---~~~----g~---w~~~l~~lgl~~~l~~~-w~~~--~ 93 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWP---NNY----GV---WVDEFEALGLLDCLDTT-WPGA--V 93 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhc---ccc----ch---HHHHHHHCCcHHHHHhh-CCCc--E
Confidence 3589999999999999999999999999999997643211 111 11 23567888987765432 2222 2
Q ss_pred EEecCCc--EEEeeCCCCCcH------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCC
Q psy9141 85 IHGQNGK--LREIPYDPVHNQ------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAY 156 (379)
Q Consensus 85 ~~~~~g~--~~~~~~~~~~~~------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~ 156 (379)
++..++. ....+|...... .......+++++ ..+|++++.+++++.|+++ +|.+ ++||+||+|||.+
T Consensus 94 v~~~~~~~~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~-dG~~---i~A~lVI~AdG~~ 168 (447)
T PLN02463 94 VYIDDGKKKDLDRPYGRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCD-DGVK---IQASLVLDATGFS 168 (447)
T ss_pred EEEeCCCCccccCcceeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEEC-CCCE---EEcCEEEECcCCC
Confidence 2221211 111122222111 111233588886 5699999998888889988 8877 9999999999999
Q ss_pred hHHHH
Q psy9141 157 SGVRK 161 (379)
Q Consensus 157 S~vr~ 161 (379)
|.+++
T Consensus 169 s~l~~ 173 (447)
T PLN02463 169 RCLVQ 173 (447)
T ss_pred cCccC
Confidence 98764
No 58
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.66 E-value=4.2e-15 Score=144.56 Aligned_cols=131 Identities=16% Similarity=0.229 Sum_probs=73.4
Q ss_pred cEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCC--ChHHHHhCCCCceee
Q psy9141 8 SVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIG--LEDKLLAHGIPMRAR 83 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lG--l~~~l~~~~~~~~~~ 83 (379)
||+|||||++|+++|+.|++. |++|+|+|+.+..... +.. +++.... ...+ .++.+.. ......
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~-----~tw--~~~~~~~---~~~~~~~~~~~v~--~~W~~~ 68 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN-----HTW--SFFDSDL---SDAQHAWLADLVQ--TDWPGY 68 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc-----ccc--eeccccc---chhhhhhhhhhhe--EeCCCC
Confidence 899999999999999999987 9999999998643211 100 1111110 0000 1112111 122233
Q ss_pred EEEecCCcE-EEeeCCCCCcH---HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141 84 MIHGQNGKL-REIPYDPVHNQ---VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG 158 (379)
Q Consensus 84 ~~~~~~g~~-~~~~~~~~~~~---~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~ 158 (379)
.+...+... ...+|...... +.+.+..+..++++++|+++ +++++++ + +|++ ++|++||+|+|.+|.
T Consensus 69 ~v~~~~~~~~l~~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v--~~~~v~l--~-dg~~---~~A~~VI~A~G~~s~ 139 (370)
T TIGR01789 69 EVRFPKYRRKLKTAYRSMTSTRFHEGLLQAFPEGVILGRKAVGL--DADGVDL--A-PGTR---INARSVIDCRGFKPS 139 (370)
T ss_pred EEECcchhhhcCCCceEEEHHHHHHHHHHhhcccEEecCEEEEE--eCCEEEE--C-CCCE---EEeeEEEECCCCCCC
Confidence 343322111 11122111111 22222122337889999988 4455555 5 8887 999999999999974
No 59
>PLN02697 lycopene epsilon cyclase
Probab=99.65 E-value=3.9e-14 Score=142.72 Aligned_cols=132 Identities=20% Similarity=0.173 Sum_probs=86.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI 85 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~ 85 (379)
.+||+||||||+|+++|..|++.|++|+|||+...... .. .++. ..++.+|+.+.+.. . +....+
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~-----n~----GvW~---~~l~~lgl~~~i~~-~--w~~~~v 172 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN-----NY----GVWE---DEFKDLGLEDCIEH-V--WRDTIV 172 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCC-----cc----ccch---hHHHhcCcHHHHHh-h--cCCcEE
Confidence 58999999999999999999999999999998532211 11 2332 35777887554432 2 222334
Q ss_pred EecCCcEEE--eeCCCCCcH------HHHhcCCCCeEEeCceEEEEEecCCeEEE-EEccCCceeEEEeecEEEecCCCC
Q psy9141 86 HGQNGKLRE--IPYDPVHNQ------VELEQYPDCNIYFQHKLINLDVNSGNVTF-YRTEDNSETKITDNQLIIGADGAY 156 (379)
Q Consensus 86 ~~~~g~~~~--~~~~~~~~~------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v-~~~~~G~~~~~i~adlVV~AdG~~ 156 (379)
+..++.... .+|...... .......++++ .+++|++++.+++++.+ .+. +|.+ ++|++||+|||.+
T Consensus 173 ~~~~~~~~~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~-dG~~---i~A~lVI~AdG~~ 247 (529)
T PLN02697 173 YLDDDKPIMIGRAYGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACE-DGRV---IPCRLATVASGAA 247 (529)
T ss_pred EecCCceeeccCcccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEc-CCcE---EECCEEEECCCcC
Confidence 333333221 122211111 12223358887 67899999887777653 456 7776 9999999999999
Q ss_pred h
Q psy9141 157 S 157 (379)
Q Consensus 157 S 157 (379)
|
T Consensus 248 S 248 (529)
T PLN02697 248 S 248 (529)
T ss_pred h
Confidence 9
No 60
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.62 E-value=2.5e-15 Score=149.67 Aligned_cols=144 Identities=19% Similarity=0.263 Sum_probs=90.0
Q ss_pred cEEEECCChHHHHHHHHHHhCC---CcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHH--HHhC-CCCce
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQ---YEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDK--LLAH-GIPMR 81 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G---~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~--l~~~-~~~~~ 81 (379)
||+|||||+||.++|..|++.+ ++|+|||+...+... -|. ++.|....+++.+|+.+. +.+. +..-.
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~~~~---vGe----~~~p~~~~~~~~lgi~e~~~~~~~~~~~k~ 73 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIPRIG---VGE----STLPSLRPFLRRLGIDEADFMRACDATFKL 73 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS---S---SEE----E--THHHHCHHHHT--HHHHCHHCT-EEES
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCCC---ccc----cchHHHHHHHHHcCCChHHHHHHhCCeEec
Confidence 7999999999999999999998 899999999866421 244 356778889999999876 4443 33334
Q ss_pred eeEEEecC--CcEEEeeCCCCCc--------H------------------------------------------------
Q psy9141 82 ARMIHGQN--GKLREIPYDPVHN--------Q------------------------------------------------ 103 (379)
Q Consensus 82 ~~~~~~~~--g~~~~~~~~~~~~--------~------------------------------------------------ 103 (379)
+..+.+.. +.....+|+.... +
T Consensus 74 g~~f~~w~~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayhlDR 153 (454)
T PF04820_consen 74 GIRFVNWGERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYAYHLDR 153 (454)
T ss_dssp EEEEESSSSCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-EEEEEH
T ss_pred cEEeeecCCCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCeeEEEeH
Confidence 55554432 3334445533100 0
Q ss_pred -------HHHhcCCCCeEEeCceEEEEEecCCe-E-EEEEccCCceeEEEeecEEEecCCCChHHHHHh
Q psy9141 104 -------VELEQYPDCNIYFQHKLINLDVNSGN-V-TFYRTEDNSETKITDNQLIIGADGAYSGVRKCL 163 (379)
Q Consensus 104 -------~~~~~~~gv~i~~~~~v~~i~~~~~~-v-~v~~~~~G~~~~~i~adlVV~AdG~~S~vr~~l 163 (379)
...+...||+++.++ |+++..++++ + .|++. +|++ ++||+||+|+|+.|.+.+..
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~-~g~~---i~ad~~IDASG~~s~L~~~~ 217 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLD-DGRT---IEADFFIDASGRRSLLARKA 217 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEET-TSEE---EEESEEEE-SGGG-CCCCCC
T ss_pred HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEEC-CCCE---EEEeEEEECCCccchhhHhh
Confidence 233444699999885 7887776654 3 47787 8887 99999999999999876664
No 61
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.56 E-value=3.3e-13 Score=131.58 Aligned_cols=266 Identities=14% Similarity=0.120 Sum_probs=138.5
Q ss_pred cEEEECCChHHHHHHHHH--HhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141 8 SVVIVGGGLVGSLSACMF--AKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI 85 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~L--a~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~ 85 (379)
||+||||||||+++|+.| ++.|.+|+|||+.+...... .+.. +.+. ..++.++.+....+ ....+
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~---~~tW--~~~~------~~~~~~~~~v~~~w--~~~~v 67 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPN---DRTW--CFWE------KDLGPLDSLVSHRW--SGWRV 67 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccC---Cccc--cccc------ccccchHHHHheec--CceEE
Confidence 899999999999999999 88899999999987652110 1100 1111 11222344433333 34455
Q ss_pred EecCCcEEEeeCCCCC-cH-------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141 86 HGQNGKLREIPYDPVH-NQ-------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS 157 (379)
Q Consensus 86 ~~~~g~~~~~~~~~~~-~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S 157 (379)
+..++......+.+.. .. ..... .+..++.+++|++|+.+++.+.+.++ +|++ ++|++||+|+|..|
T Consensus 68 ~~~~~~~~~~~~~Y~~i~~~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~~~v~~~-~g~~---i~a~~VvDa~g~~~ 142 (374)
T PF05834_consen 68 YFPDGSRILIDYPYCMIDRADFYEFLLERAA-AGGVIRLNARVTSIEETGDGVLVVLA-DGRT---IRARVVVDARGPSS 142 (374)
T ss_pred EeCCCceEEcccceEEEEHHHHHHHHHHHhh-hCCeEEEccEEEEEEecCceEEEEEC-CCCE---EEeeEEEECCCccc
Confidence 5544433222211111 11 11122 34467788999999999998888888 8987 99999999999776
Q ss_pred HHHHHhhhcCCCCccceeeeeeeEEEeeCCCCCccccccccceeeecC---CCCeEEEEEecCCCceee----ecCCC-C
Q psy9141 158 GVRKCLMKQSMFNYSQTYIEHGYMELCIPPSEDNEVWLYKNRLLSSVP---EVRKRISLRAQSLKSLMN----FPRAD-Q 229 (379)
Q Consensus 158 ~vr~~l~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~p~~~~~~~p---~~~~~~~~~~~~~~~~~~----~p~~~-~ 229 (379)
...+.. .-|.+..+. .+...|........+++ ...+ +...-+++-|...++.+. +.... .
T Consensus 143 ~~~~~~-------~~Q~f~G~~-v~~~~~~f~~~~~~lMD----~r~~~~~~~~~F~Y~lP~~~~~alvE~T~fs~~~~~ 210 (374)
T PF05834_consen 143 PKARPL-------GLQHFYGWE-VETDEPVFDPDTATLMD----FRVPQSADGPSFLYVLPFSEDRALVEETSFSPRPAL 210 (374)
T ss_pred cccccc-------ccceeEEEE-EeccCCCCCCCceEEEE----ecccCCCCCceEEEEEEcCCCeEEEEEEEEcCCCCC
Confidence 521111 112222111 12212210111111111 1111 111233444555444442 22211 1
Q ss_pred C-CChhhhcccccccccccCCcccCCCccccCCC--CCcc-c-cCCcEEEe-eecccCCCcchhhhhHHHHHHHHHHhhc
Q psy9141 230 G-GDKRDCLLHEGTSRILVPNMRLSNHLDRDQPC--KPLL-D-FKNPIKIQ-SHAVVNEFYKQESLIVASLCQEKIEKMF 303 (379)
Q Consensus 230 ~-~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~-~-~~~~~liG-Ah~~~~P~~GQG~n~gl~Da~~L~~~l~ 303 (379)
. .+..+.+...-.. ................|+ .+.. . ..++..|| |..++||.+|=++..+++.+..+++.+.
T Consensus 211 ~~~~~~~~l~~~l~~-~g~~~~~i~~~E~G~IPm~~~~~~~~~~~~v~~iG~agG~v~PsTGYs~~~~~~~a~~ia~~l~ 289 (374)
T PF05834_consen 211 PEEELKARLRRYLER-LGIDDYEILEEERGVIPMTTGGFPPRFGQRVIRIGTAGGMVKPSTGYSFARIQRQADAIADALA 289 (374)
T ss_pred CHHHHHHHHHHHHHH-cCCCceeEEEeecceeecccCCCccccCCCeeeEEccccCCCCcccHHHHHHHHHHHHHHHHHh
Confidence 1 1122222111000 000000000012233455 1111 1 23789999 8888889999999999999999999987
Q ss_pred c
Q psy9141 304 D 304 (379)
Q Consensus 304 ~ 304 (379)
+
T Consensus 290 ~ 290 (374)
T PF05834_consen 290 K 290 (374)
T ss_pred h
Confidence 5
No 62
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.43 E-value=3.5e-13 Score=127.48 Aligned_cols=145 Identities=18% Similarity=0.189 Sum_probs=91.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCC--CCCCcccccccCHHHHHHHHHCC-----ChHHHHhC
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSG--LSEGKSINLALSVRGREALRRIG-----LEDKLLAH 76 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~--~~~g~~i~~al~~~~~~~l~~lG-----l~~~l~~~ 76 (379)
|+.+||+||||||||+++|..++++|.+|+|||+.+.+...= +..|| .+++-.....+++.+.. +...+. .
T Consensus 1 ~~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGr-CN~Tn~~~~~~~ls~~p~~~~fl~sal~-~ 78 (408)
T COG2081 1 MERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGR-CNFTNSEAPDEFLSRNPGNGHFLKSALA-R 78 (408)
T ss_pred CCcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCC-ccccccccHHHHHHhCCCcchHHHHHHH-h
Confidence 346899999999999999999999999999999998764220 11122 12222222334444432 111111 1
Q ss_pred CCCc--------eeeEEEec-CCcEEEeeCCCCC-cH------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCce
Q psy9141 77 GIPM--------RARMIHGQ-NGKLREIPYDPVH-NQ------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSE 140 (379)
Q Consensus 77 ~~~~--------~~~~~~~~-~g~~~~~~~~~~~-~~------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~ 140 (379)
-.+. .++..+.. .|+ -|.... .+ ....+..||+|+.+++|.+++.++.+..+.+. +|++
T Consensus 79 ft~~d~i~~~e~~Gi~~~e~~~Gr----~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~-~g~~ 153 (408)
T COG2081 79 FTPEDFIDWVEGLGIALKEEDLGR----MFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTS-SGET 153 (408)
T ss_pred CCHHHHHHHHHhcCCeeEEccCce----ecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcC-CCCE
Confidence 1111 11222221 122 122211 11 22234479999999999999999989999998 9986
Q ss_pred eEEEeecEEEecCCCChH
Q psy9141 141 TKITDNQLIIGADGAYSG 158 (379)
Q Consensus 141 ~~~i~adlVV~AdG~~S~ 158 (379)
++||-+|.|+|..|.
T Consensus 154 ---i~~d~lilAtGG~S~ 168 (408)
T COG2081 154 ---VKCDSLILATGGKSW 168 (408)
T ss_pred ---EEccEEEEecCCcCC
Confidence 999999999999884
No 63
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.40 E-value=3.8e-12 Score=117.52 Aligned_cols=145 Identities=15% Similarity=0.192 Sum_probs=88.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCccc-ccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSI-NLALSVRGREALRRIGLEDKLLAHGIPMRAR 83 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i-~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~ 83 (379)
.++||+||||||+|+++|+.|++.|++|+|+|+.+.+...-...+... ...+......+|+++|+.- ..
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~---------~~- 93 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRY---------KE- 93 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCc---------ee-
Confidence 468999999999999999999999999999999876542100001000 0123445566777766521 10
Q ss_pred EEEecCCcEEEeeCCCCCcH-HHHhcCCCCeEEeCceEEEEEecCC-eEE-EEEc-----cCC---ceeEEEeecEEEec
Q psy9141 84 MIHGQNGKLREIPYDPVHNQ-VELEQYPDCNIYFQHKLINLDVNSG-NVT-FYRT-----EDN---SETKITDNQLIIGA 152 (379)
Q Consensus 84 ~~~~~~g~~~~~~~~~~~~~-~~~~~~~gv~i~~~~~v~~i~~~~~-~v~-v~~~-----~~G---~~~~~i~adlVV~A 152 (379)
. ..+. ...+....... ...+...|++++++++|+++..+++ .+. +... .+| +..+ ++|++||+|
T Consensus 94 --~-~~g~-~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~-i~Ak~VI~A 168 (257)
T PRK04176 94 --V-EDGL-YVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLT-IEAKAVVDA 168 (257)
T ss_pred --e-cCcc-eeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEE-EEcCEEEEE
Confidence 0 1111 10000000000 2223346999999999999987555 332 2111 012 2234 999999999
Q ss_pred CCCChHHHHHhh
Q psy9141 153 DGAYSGVRKCLM 164 (379)
Q Consensus 153 dG~~S~vr~~l~ 164 (379)
+|.+|.+.+.+.
T Consensus 169 TG~~a~v~~~l~ 180 (257)
T PRK04176 169 TGHDAEVVSVLA 180 (257)
T ss_pred eCCCcHHHHHHH
Confidence 999999998884
No 64
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.39 E-value=8.3e-12 Score=114.95 Aligned_cols=146 Identities=16% Similarity=0.206 Sum_probs=88.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCccc-ccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSI-NLALSVRGREALRRIGLEDKLLAHGIPMRAR 83 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i-~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~ 83 (379)
.++||+||||||+||++|+.|++.|++|+|+||...........+... ...+.....++++.+|+.- ..
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~---------~~- 89 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRY---------ED- 89 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCe---------ee-
Confidence 468999999999999999999999999999999986642211111000 0113344556666665421 10
Q ss_pred EEEecCCcEEEeeCCCCCcH-HHHhcCCCCeEEeCceEEEEEecCC--eEE-EEEc-----cCC---ceeEEEeecEEEe
Q psy9141 84 MIHGQNGKLREIPYDPVHNQ-VELEQYPDCNIYFQHKLINLDVNSG--NVT-FYRT-----EDN---SETKITDNQLIIG 151 (379)
Q Consensus 84 ~~~~~~g~~~~~~~~~~~~~-~~~~~~~gv~i~~~~~v~~i~~~~~--~v~-v~~~-----~~G---~~~~~i~adlVV~ 151 (379)
...+... .+....... .......+++++.++.|+++..+++ .+. +... .+| +..+ ++|++||+
T Consensus 90 ---~~~g~~~-~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~-i~Ak~VVd 164 (254)
T TIGR00292 90 ---EGDGYVV-ADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLT-QRSRVVVD 164 (254)
T ss_pred ---ccCceEE-eeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEE-EEcCEEEE
Confidence 0011100 000000000 1222335899999999999987666 232 2221 012 2345 99999999
Q ss_pred cCCCChHHHHHhhh
Q psy9141 152 ADGAYSGVRKCLMK 165 (379)
Q Consensus 152 AdG~~S~vr~~l~~ 165 (379)
|+|..|.+.+++..
T Consensus 165 ATG~~a~v~~~l~~ 178 (254)
T TIGR00292 165 ATGHDAEIVAVCAK 178 (254)
T ss_pred eecCCchHHHHHHH
Confidence 99999999888743
No 65
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.29 E-value=1.1e-11 Score=125.58 Aligned_cols=155 Identities=20% Similarity=0.231 Sum_probs=91.6
Q ss_pred CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCC--h-------H
Q psy9141 1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGL--E-------D 71 (379)
Q Consensus 1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl--~-------~ 71 (379)
|+++.++||+|||||++|+++|+.|+++|++|+|+||.+.....+....+ +-+.+.++++...+ . .
T Consensus 1 ~~~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~~ss~-----lihgg~ryl~~~~~~l~~e~~~e~~ 75 (502)
T PRK13369 1 MAEPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSSRSGK-----LVHGGLRYLEYYEFRLVREALIERE 75 (502)
T ss_pred CCCCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCchhhhh-----hHHHHHHHHHhccHHHHHHHHHHHH
Confidence 55456799999999999999999999999999999999765433322222 23444444443221 0 0
Q ss_pred HHHhCC----CCceeeEEEec-C-----------------C------cEEEee-------------------C-CCCCc-
Q psy9141 72 KLLAHG----IPMRARMIHGQ-N-----------------G------KLREIP-------------------Y-DPVHN- 102 (379)
Q Consensus 72 ~l~~~~----~~~~~~~~~~~-~-----------------g------~~~~~~-------------------~-~~~~~- 102 (379)
.+.... .+.. +.+... . + ....+. + +....
T Consensus 76 ~l~~~ap~l~~~~~-~~~~~~~~~~~~~~~~~g~~ly~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~a~~~~dg~vd~ 154 (502)
T PRK13369 76 VLLAAAPHIIWPMR-FVLPHSPEDRPAWLVRLGLFLYDHLGGRKRLPGTRTLDLRRDPEGAPLKPEYTKGFEYSDCWVDD 154 (502)
T ss_pred HHHHhCCccccccc-eEEecccccccHHHHHHHHHHHHhccCCCCCCcceEechhhccccCCchHhcCEEEEEcCeeecH
Confidence 111110 0000 000000 0 0 000000 0 00000
Q ss_pred H------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccC--CceeEEEeecEEEecCCCChH-HHHHh
Q psy9141 103 Q------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTED--NSETKITDNQLIIGADGAYSG-VRKCL 163 (379)
Q Consensus 103 ~------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~--G~~~~~i~adlVV~AdG~~S~-vr~~l 163 (379)
. ...+...|++++.+++|+++..+++.+.+++. + |++.+ ++|+.||.|+|.+|. +.+.+
T Consensus 155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~-~~~g~~~~-i~a~~VVnAaG~wa~~l~~~~ 222 (502)
T PRK13369 155 ARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETR-DADGETRT-VRARALVNAAGPWVTDVIHRV 222 (502)
T ss_pred HHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEE-eCCCCEEE-EEecEEEECCCccHHHHHhhc
Confidence 0 23345579999999999999988877777655 3 44455 999999999999984 44433
No 66
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.27 E-value=1.3e-10 Score=117.72 Aligned_cols=44 Identities=23% Similarity=0.254 Sum_probs=38.5
Q ss_pred CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCC
Q psy9141 1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNS 44 (379)
Q Consensus 1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~ 44 (379)
|.++..+||+|||||++|+++|+.|+++|++|+|+||.+.....
T Consensus 1 ~~~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~Gt 44 (508)
T PRK12266 1 MTMMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASAT 44 (508)
T ss_pred CCCCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCc
Confidence 55556799999999999999999999999999999998755433
No 67
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.26 E-value=3.1e-11 Score=115.96 Aligned_cols=47 Identities=26% Similarity=0.349 Sum_probs=38.6
Q ss_pred cCCCCeEEeCceEEEEEecCCeEE-EEEccCCceeEEEeecEEEecCCCChHH
Q psy9141 108 QYPDCNIYFQHKLINLDVNSGNVT-FYRTEDNSETKITDNQLIIGADGAYSGV 159 (379)
Q Consensus 108 ~~~gv~i~~~~~v~~i~~~~~~v~-v~~~~~G~~~~~i~adlVV~AdG~~S~v 159 (379)
+..|++++.+++|++++.++++|+ |.+. +|+ ++||.||.|+|.+|..
T Consensus 158 ~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~-~g~----i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 158 QRAGVEIRTGTEVTSIDVDGGRVTGVRTS-DGE----IRADRVVLAAGAWSPQ 205 (358)
T ss_dssp HHTT-EEEESEEEEEEEEETTEEEEEEET-TEE----EEECEEEE--GGGHHH
T ss_pred HHhhhhccccccccchhhccccccccccc-ccc----cccceeEeccccccee
Confidence 335999999999999999999998 8888 775 8999999999999844
No 68
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.25 E-value=5.6e-11 Score=116.49 Aligned_cols=142 Identities=19% Similarity=0.272 Sum_probs=72.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCC--CCCCCcc-----------cccc---cCHHHHHHHHHCCCh
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNS--GLSEGKS-----------INLA---LSVRGREALRRIGLE 70 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~--~~~~g~~-----------i~~a---l~~~~~~~l~~lGl~ 70 (379)
|||+||||||+||++|+.|++.|.+|+|+||.+..... -...||. .... -..-....|++++..
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 79999999999999999999999999999999865310 0000110 0000 001123345554422
Q ss_pred ---HHHHhCCCCceeeEEEecCCcEEEeeCCCCCcH-----HHHhcCCCCeEEeCceEEEEEecCCe-EEEEEccCCcee
Q psy9141 71 ---DKLLAHGIPMRARMIHGQNGKLREIPYDPVHNQ-----VELEQYPDCNIYFQHKLINLDVNSGN-VTFYRTEDNSET 141 (379)
Q Consensus 71 ---~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~gv~i~~~~~v~~i~~~~~~-v~v~~~~~G~~~ 141 (379)
.-+.+.+.+.. ...+++. +|....... ....+..+++|+++++|++++.++++ +.|.+. ++.+
T Consensus 81 d~~~ff~~~Gv~~~----~~~~gr~--fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~-~~~~- 152 (409)
T PF03486_consen 81 DLIAFFEELGVPTK----IEEDGRV--FPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTK-NGGE- 152 (409)
T ss_dssp HHHHHHHHTT--EE----E-STTEE--EETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEET-TTEE-
T ss_pred HHHHHHHhcCCeEE----EcCCCEE--CCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeecc-Cccc-
Confidence 22223333321 1234432 233222111 12223469999999999999988877 778886 6666
Q ss_pred EEEeecEEEecCCCChH
Q psy9141 142 KITDNQLIIGADGAYSG 158 (379)
Q Consensus 142 ~~i~adlVV~AdG~~S~ 158 (379)
+.||.||.|+|..|.
T Consensus 153 --~~a~~vILAtGG~S~ 167 (409)
T PF03486_consen 153 --YEADAVILATGGKSY 167 (409)
T ss_dssp --EEESEEEE----SSS
T ss_pred --ccCCEEEEecCCCCc
Confidence 999999999999873
No 69
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.25 E-value=1.1e-10 Score=113.84 Aligned_cols=46 Identities=13% Similarity=0.323 Sum_probs=39.8
Q ss_pred cCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141 108 QYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG 158 (379)
Q Consensus 108 ~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~ 158 (379)
...+++++++++|++++.+++++.++++ +| + ++||.||.|+|.++.
T Consensus 160 ~~~gv~i~~~~~v~~i~~~~~~~~v~~~-~g-~---~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 160 REAGAELLFNEPVTAIEADGDGVTVTTA-DG-T---YEAKKLVVSAGAWVK 205 (376)
T ss_pred HHCCCEEECCCEEEEEEeeCCeEEEEeC-CC-E---EEeeEEEEecCcchh
Confidence 3469999999999999988888888877 77 4 899999999999874
No 70
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.23 E-value=1.7e-10 Score=112.61 Aligned_cols=51 Identities=14% Similarity=0.150 Sum_probs=41.5
Q ss_pred cCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh-HHHHHh
Q psy9141 108 QYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS-GVRKCL 163 (379)
Q Consensus 108 ~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S-~vr~~l 163 (379)
+..+++++.+++|++++.+++.+.+++. +| + +.||.||.|+|.++ .+++.+
T Consensus 156 ~~~g~~~~~~~~V~~i~~~~~~~~v~~~-~~-~---i~a~~vV~aaG~~~~~l~~~~ 207 (380)
T TIGR01377 156 EAHGATVRDGTKVVEIEPTELLVTVKTT-KG-S---YQANKLVVTAGAWTSKLLSPL 207 (380)
T ss_pred HHcCCEEECCCeEEEEEecCCeEEEEeC-CC-E---EEeCEEEEecCcchHHHhhhc
Confidence 3469999999999999988888888776 65 4 89999999999874 566655
No 71
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.20 E-value=2.4e-10 Score=99.73 Aligned_cols=142 Identities=15% Similarity=0.235 Sum_probs=88.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCccc--ccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSI--NLALSVRGREALRRIGLEDKLLAHGIPMRAR 83 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i--~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~ 83 (379)
..||+||||||+||++|+.||+.|++|+|+||+-.+... .+-|... .+.+...+.++|+++|+.-+-.+. +.
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG-~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~-----g~ 103 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGG-IWGGGMLFNKIVVREEADEILDEFGIRYEEEED-----GY 103 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCc-ccccccccceeeecchHHHHHHHhCCcceecCC-----ce
Confidence 469999999999999999999999999999999766422 1111100 012455788888888862111000 01
Q ss_pred EEEecCCcEEEeeCCCCCcH-HHHhcCCCCeEEeCceEEEEEecCC-eEE-EEEc-----cCC---ceeEEEeecEEEec
Q psy9141 84 MIHGQNGKLREIPYDPVHNQ-VELEQYPDCNIYFQHKLINLDVNSG-NVT-FYRT-----EDN---SETKITDNQLIIGA 152 (379)
Q Consensus 84 ~~~~~~g~~~~~~~~~~~~~-~~~~~~~gv~i~~~~~v~~i~~~~~-~v~-v~~~-----~~G---~~~~~i~adlVV~A 152 (379)
.+.+.. .+. .. ...+-..+++|+.+..|+++...++ +|. +... ..+ +..+ ++|++||+|
T Consensus 104 ~v~ds~------e~~---skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~-i~a~~VvDa 173 (262)
T COG1635 104 YVADSA------EFA---SKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLT-IRAKAVVDA 173 (262)
T ss_pred EEecHH------HHH---HHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcce-eeEEEEEeC
Confidence 111100 000 11 1222345899999999999877666 433 1110 011 1234 899999999
Q ss_pred CCCChHHHHHh
Q psy9141 153 DGAYSGVRKCL 163 (379)
Q Consensus 153 dG~~S~vr~~l 163 (379)
+|.-..+-+.+
T Consensus 174 TGHda~v~~~~ 184 (262)
T COG1635 174 TGHDAEVVSFL 184 (262)
T ss_pred CCCchHHHHHH
Confidence 99998777665
No 72
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.20 E-value=3.3e-10 Score=114.90 Aligned_cols=143 Identities=19% Similarity=0.250 Sum_probs=83.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC-CCCCCCCCCCcccccccC-HHHHHHHHHCC-ChHHHHhC-CCC
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE-DIRNSGLSEGKSINLALS-VRGREALRRIG-LEDKLLAH-GIP 79 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~-~~~~~~~~~g~~i~~al~-~~~~~~l~~lG-l~~~l~~~-~~~ 79 (379)
+.+|||+||||||||+.+|+.+++.|.+|+++|+.. .....+ +.-.+. .+. ....+.++.+| +....... +..
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~--CnpsiG-G~akg~lvrEidalGg~~g~~~d~~giq 78 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMS--CNPAIG-GIAKGHLVREIDALGGEMGKAIDKTGIQ 78 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccC--Cccccc-cchhhHHHHHHHhcCCHHHHHHhhccCc
Confidence 457999999999999999999999999999999884 221110 011110 011 12233345554 22222222 221
Q ss_pred ceeeEEEec-CCcEEEeeCCCCCcH-------HHHhcCCCCeEEeCceEEEEEecCCeEE-EEEccCCceeEEEeecEEE
Q psy9141 80 MRARMIHGQ-NGKLREIPYDPVHNQ-------VELEQYPDCNIYFQHKLINLDVNSGNVT-FYRTEDNSETKITDNQLII 150 (379)
Q Consensus 80 ~~~~~~~~~-~g~~~~~~~~~~~~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~v~-v~~~~~G~~~~~i~adlVV 150 (379)
..+.+. .|.....+....... ..+...++++++ ...|+++..+++.+. |.+. +|.. +.|+.||
T Consensus 79 ---~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~grV~GV~t~-dG~~---I~Ak~VI 150 (618)
T PRK05192 79 ---FRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVENGRVVGVVTQ-DGLE---FRAKAVV 150 (618)
T ss_pred ---eeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecCCEEEEEEEC-CCCE---EECCEEE
Confidence 122221 111111111011000 334456789985 567888887777665 6777 8877 9999999
Q ss_pred ecCCCCh
Q psy9141 151 GADGAYS 157 (379)
Q Consensus 151 ~AdG~~S 157 (379)
.|+|.++
T Consensus 151 lATGTFL 157 (618)
T PRK05192 151 LTTGTFL 157 (618)
T ss_pred EeeCcch
Confidence 9999876
No 73
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.19 E-value=2.3e-10 Score=111.57 Aligned_cols=157 Identities=18% Similarity=0.302 Sum_probs=88.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCC--CcEEEEccCCCCCCC-CCCCCcccccccC--HH-HHHHHHHCC--ChHHHHh
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKNQ--YEVNLYEAREDIRNS-GLSEGKSINLALS--VR-GREALRRIG--LEDKLLA 75 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~G--~~V~viE~~~~~~~~-~~~~g~~i~~al~--~~-~~~~l~~lG--l~~~l~~ 75 (379)
|.++||+|||||+.|+++|+.|++.+ ++|+|+||...+... +......||-++. +. ...=+...| .+.++.+
T Consensus 1 ~~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~k 80 (429)
T COG0579 1 MMDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICK 80 (429)
T ss_pred CCceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHH
Confidence 34689999999999999999999998 999999999877633 2233333333321 11 000011111 0111111
Q ss_pred C-CCCc---eeeEEEecCCcE---------------------------EEeeC-------------CCCCcH-------H
Q psy9141 76 H-GIPM---RARMIHGQNGKL---------------------------REIPY-------------DPVHNQ-------V 104 (379)
Q Consensus 76 ~-~~~~---~~~~~~~~~g~~---------------------------~~~~~-------------~~~~~~-------~ 104 (379)
+ ..+. ..+.+...+... ...|. ....+. .
T Consensus 81 q~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~ 160 (429)
T COG0579 81 QLGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALA 160 (429)
T ss_pred HhCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHH
Confidence 1 1000 111111111000 00000 000000 2
Q ss_pred HHhcCCCCeEEeCceEEEEEecCCe-EEEEEccCCceeEEEeecEEEecCCCChH-HHHHh
Q psy9141 105 ELEQYPDCNIYFQHKLINLDVNSGN-VTFYRTEDNSETKITDNQLIIGADGAYSG-VRKCL 163 (379)
Q Consensus 105 ~~~~~~gv~i~~~~~v~~i~~~~~~-v~v~~~~~G~~~~~i~adlVV~AdG~~S~-vr~~l 163 (379)
..++..|++++++++|++++..+++ ..+.+. +|++ + ++|++||.|.|.+|. +.+..
T Consensus 161 e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~-~g~~-~-~~ak~Vin~AGl~Ad~la~~~ 218 (429)
T COG0579 161 EEAQANGVELRLNTEVTGIEKQSDGVFVLNTS-NGEE-T-LEAKFVINAAGLYADPLAQMA 218 (429)
T ss_pred HHHHHcCCEEEecCeeeEEEEeCCceEEEEec-CCcE-E-EEeeEEEECCchhHHHHHHHh
Confidence 3334459999999999999999885 445566 7763 3 899999999999995 44444
No 74
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.18 E-value=2.8e-10 Score=116.27 Aligned_cols=39 Identities=26% Similarity=0.297 Sum_probs=35.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR 42 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~ 42 (379)
+.++||+|||||++|+++|+.|+++|++|+||||.....
T Consensus 4 ~~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~~ 42 (546)
T PRK11101 4 SQETDVIIIGGGATGAGIARDCALRGLRCILVERHDIAT 42 (546)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCCC
Confidence 446999999999999999999999999999999976543
No 75
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.18 E-value=1.7e-10 Score=114.62 Aligned_cols=154 Identities=16% Similarity=0.190 Sum_probs=100.3
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCC---hHHHHh-----
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGL---EDKLLA----- 75 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl---~~~l~~----- 75 (379)
+.++||+|||||+.|+-+|+-++.+|++|+++|+++.....++... -|-|.+.++|++..+ .+.+.+
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrst-----kLiHGGlRYl~~~e~~lvrEal~Er~vL~ 84 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRST-----KLIHGGLRYLEQYEFSLVREALAEREVLL 84 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccc-----cCccchhhhhhhcchHHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999998876543333 356788888887532 222222
Q ss_pred ----C-CCCceeeEEEec--CCcE----------------------EEeeCC-------CCCc-----------------
Q psy9141 76 ----H-GIPMRARMIHGQ--NGKL----------------------REIPYD-------PVHN----------------- 102 (379)
Q Consensus 76 ----~-~~~~~~~~~~~~--~g~~----------------------~~~~~~-------~~~~----------------- 102 (379)
+ ..|......... .... ..+... ....
T Consensus 85 ~~APH~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vdda 164 (532)
T COG0578 85 RIAPHLVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDA 164 (532)
T ss_pred HhCccccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechH
Confidence 1 122222211111 0000 000000 0000
Q ss_pred H-----HHHhcCCCCeEEeCceEEEEEecCCe--EEEEEccCCceeEEEeecEEEecCCCChH-HHHHh
Q psy9141 103 Q-----VELEQYPDCNIYFQHKLINLDVNSGN--VTFYRTEDNSETKITDNQLIIGADGAYSG-VRKCL 163 (379)
Q Consensus 103 ~-----~~~~~~~gv~i~~~~~v~~i~~~~~~--v~v~~~~~G~~~~~i~adlVV~AdG~~S~-vr~~l 163 (379)
+ ...+...|.+++..++|+++..+++. |.++...+|++.+ ++|+.||.|+|.|+. +++..
T Consensus 165 RLv~~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~-ira~~VVNAaGpW~d~i~~~~ 232 (532)
T COG0578 165 RLVAANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYE-IRARAVVNAAGPWVDEILEMA 232 (532)
T ss_pred HHHHHHHHHHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEE-EEcCEEEECCCccHHHHHHhh
Confidence 0 23455679999999999999998883 3344333577778 999999999999995 56555
No 76
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.17 E-value=6.6e-11 Score=103.76 Aligned_cols=140 Identities=16% Similarity=0.189 Sum_probs=77.7
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCc-cc-ccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGK-SI-NLALSVRGREALRRIGLEDKLLAHGIPMRAR 83 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~-~i-~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~ 83 (379)
++||+||||||+||++|+.|++.|++|+|+|++..+... ...|. .. .+.+...+..+|+++|+.-+ +.
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg-~~~Gg~lf~~iVVq~~a~~iL~elgi~y~--~~------- 86 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGG-MWGGGMLFNKIVVQEEADEILDELGIPYE--EY------- 86 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTT-TTS-CTT---EEEETTTHHHHHHHT---E--E--------
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcc-ccccccccchhhhhhhHHHHHHhCCceeE--Ee-------
Confidence 589999999999999999999999999999999866532 11111 00 01345567888888876211 00
Q ss_pred EEEecCCcEEEeeCCCCCcH-HHHhcCCCCeEEeCceEEEEEecC-CeEE-EEEc-----cCC---ceeEEEeecEEEec
Q psy9141 84 MIHGQNGKLREIPYDPVHNQ-VELEQYPDCNIYFQHKLINLDVNS-GNVT-FYRT-----EDN---SETKITDNQLIIGA 152 (379)
Q Consensus 84 ~~~~~~g~~~~~~~~~~~~~-~~~~~~~gv~i~~~~~v~~i~~~~-~~v~-v~~~-----~~G---~~~~~i~adlVV~A 152 (379)
.++- ...+....... ...+..+|++|+..+.|+++...+ +++. +... ..| +..+ ++|++||+|
T Consensus 87 ----~~g~-~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~-i~ak~ViDa 160 (230)
T PF01946_consen 87 ----GDGY-YVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLT-IRAKVVIDA 160 (230)
T ss_dssp ----SSEE-EES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EE-EEESEEEE-
T ss_pred ----CCeE-EEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcce-EEEeEEEeC
Confidence 0110 00000000000 122234899999999999987766 5544 2111 022 2235 999999999
Q ss_pred CCCChHHHH
Q psy9141 153 DGAYSGVRK 161 (379)
Q Consensus 153 dG~~S~vr~ 161 (379)
+|.-+.+-+
T Consensus 161 TGHda~v~~ 169 (230)
T PF01946_consen 161 TGHDAEVVR 169 (230)
T ss_dssp --SSSSSTS
T ss_pred CCCchHHHH
Confidence 999875433
No 77
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.15 E-value=2.7e-11 Score=120.24 Aligned_cols=148 Identities=18% Similarity=0.199 Sum_probs=37.1
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEEe
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIHG 87 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~ 87 (379)
|||||||||+|+++|+.+++.|.+|+|||+.+.........+... ........ .-.-|++.++..............
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~--~~~~~~~~-~~~~gi~~e~~~~~~~~~~~~~~~ 77 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSP--FDGNHDED-QVIGGIFREFLNRLRARGGYPQED 77 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-E--ETTEEHHH-HHHHHHHHHHHHST----------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCC--hhhcchhh-ccCCCHHHHHHHHHhhhccccccc
Confidence 899999999999999999999999999999987753322112111 01111111 111133444443322111000000
Q ss_pred cCCcEEEeeCCCCCcH---HHHhcCCCCeEEeCceEEEEEecCCeEE-EEEcc-CCceeEEEeecEEEecCCCChHHH
Q psy9141 88 QNGKLREIPYDPVHNQ---VELEQYPDCNIYFQHKLINLDVNSGNVT-FYRTE-DNSETKITDNQLIIGADGAYSGVR 160 (379)
Q Consensus 88 ~~g~~~~~~~~~~~~~---~~~~~~~gv~i~~~~~v~~i~~~~~~v~-v~~~~-~G~~~~~i~adlVV~AdG~~S~vr 160 (379)
..+......+...... .......|+++++++.|+++..+++.++ |++.. +| ..+ ++|+++|+|+|-....+
T Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g-~~~-i~A~~~IDaTG~g~l~~ 153 (428)
T PF12831_consen 78 RYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSG-RKE-IRAKVFIDATGDGDLAA 153 (428)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc-ccccccccccccccccc
Confidence 0110000111111000 2333557999999999999998876543 33331 34 345 99999999999655444
No 78
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.14 E-value=1.4e-10 Score=103.04 Aligned_cols=131 Identities=15% Similarity=0.125 Sum_probs=66.9
Q ss_pred EEECCChHHHHHHHHHHhCCCc-EEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEEec
Q psy9141 10 VIVGGGLVGSLSACMFAKNQYE-VNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIHGQ 88 (379)
Q Consensus 10 vIVGaGpaGl~~A~~La~~G~~-V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~ 88 (379)
+||||||+||++|..|.+.|.+ |+|+|+.+.+....... +.... +....... ....+........
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~---------~~~~~-~~~~~~~~----~~~~~~~~~~~~~ 66 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRY---------YSYTR-LHSPSFFS----SDFGLPDFESFSF 66 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH----------TTTT--BSSSCCT----GGSS--CCCHSCH
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEe---------CCCCc-cccCcccc----ccccCCccccccc
Confidence 7999999999999999999999 99999997663210000 00000 00000000 0000000000000
Q ss_pred CCc-EEEeeCCCCCcH------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141 89 NGK-LREIPYDPVHNQ------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG 158 (379)
Q Consensus 89 ~g~-~~~~~~~~~~~~------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~ 158 (379)
... ....+......+ +...+..+++++++++|++++.++++|++++. ++++ ++||.||.|+|..|.
T Consensus 67 ~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~-~~~~---~~a~~VVlAtG~~~~ 139 (203)
T PF13738_consen 67 DDSPEWRWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTR-DGRT---IRADRVVLATGHYSH 139 (203)
T ss_dssp HHHHHHHHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEET-TS-E---EEEEEEEE---SSCS
T ss_pred ccCCCCCCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEE-ecce---eeeeeEEEeeeccCC
Confidence 000 000000001011 33444457789999999999999999999998 8855 999999999998765
No 79
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.13 E-value=4.9e-10 Score=110.12 Aligned_cols=51 Identities=22% Similarity=0.262 Sum_probs=41.6
Q ss_pred cCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH-HHHHh
Q psy9141 108 QYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG-VRKCL 163 (379)
Q Consensus 108 ~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~-vr~~l 163 (379)
+..|++++++++|++++.+++++.+.+. +| + ++||.||.|+|.+|. +.+.+
T Consensus 160 ~~~Gv~i~~~~~V~~i~~~~~~~~V~~~-~g-~---i~ad~vV~A~G~~s~~l~~~~ 211 (393)
T PRK11728 160 QARGGEIRLGAEVTALDEHANGVVVRTT-QG-E---YEARTLINCAGLMSDRLAKMA 211 (393)
T ss_pred HhCCCEEEcCCEEEEEEecCCeEEEEEC-CC-E---EEeCEEEECCCcchHHHHHHh
Confidence 3468999999999999988888877776 66 4 899999999999984 44433
No 80
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.12 E-value=7.9e-10 Score=109.21 Aligned_cols=51 Identities=8% Similarity=0.118 Sum_probs=39.6
Q ss_pred HhcCCCCeEEeCceEEEEEecCCeEEEEEccCCc---eeEEEeecEEEecCCCChH
Q psy9141 106 LEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNS---ETKITDNQLIIGADGAYSG 158 (379)
Q Consensus 106 ~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~---~~~~i~adlVV~AdG~~S~ 158 (379)
..+..|++++++++|++++.+++++++.+. ++. ..+ ++||.||.|+|.+|.
T Consensus 206 ~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~-~~~~~~~~~-i~a~~vV~a~G~~s~ 259 (410)
T PRK12409 206 ACARLGVQFRYGQEVTSIKTDGGGVVLTVQ-PSAEHPSRT-LEFDGVVVCAGVGSR 259 (410)
T ss_pred HHHhCCCEEEcCCEEEEEEEeCCEEEEEEE-cCCCCccce-EecCEEEECCCcChH
Confidence 344569999999999999988888776654 321 113 899999999999984
No 81
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.10 E-value=1e-09 Score=114.97 Aligned_cols=44 Identities=14% Similarity=0.225 Sum_probs=39.3
Q ss_pred CCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141 111 DCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG 158 (379)
Q Consensus 111 gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~ 158 (379)
|++++++++|++++.+++++++.+. +|.. ++||.||.|+|.+|.
T Consensus 421 Gv~i~~~~~V~~i~~~~~~~~v~t~-~g~~---~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 421 QLTIHFGHEVARLEREDDGWQLDFA-GGTL---ASAPVVVLANGHDAA 464 (662)
T ss_pred CcEEEeCCEeeEEEEeCCEEEEEEC-CCcE---EECCEEEECCCCCcc
Confidence 8999999999999988888888877 7776 789999999999984
No 82
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.09 E-value=1e-09 Score=110.55 Aligned_cols=38 Identities=21% Similarity=0.603 Sum_probs=33.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCC
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDI 41 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~ 41 (379)
+.++||+|||||++|+++|+.|++. |++|+|+||.+..
T Consensus 3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~ 42 (494)
T PRK05257 3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGV 42 (494)
T ss_pred CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCch
Confidence 4568999999999999999999985 8899999998754
No 83
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.06 E-value=2e-09 Score=107.97 Aligned_cols=55 Identities=9% Similarity=0.182 Sum_probs=40.6
Q ss_pred cCCCCeEEeCceEEEEEec-CCeEEEEE--ccCCceeEEEeecEEEecCCCChH-HHHHh
Q psy9141 108 QYPDCNIYFQHKLINLDVN-SGNVTFYR--TEDNSETKITDNQLIIGADGAYSG-VRKCL 163 (379)
Q Consensus 108 ~~~gv~i~~~~~v~~i~~~-~~~v~v~~--~~~G~~~~~i~adlVV~AdG~~S~-vr~~l 163 (379)
+..|++++++++|++++.+ +++|++.. ..+|+..+ ++||+||.|.|.+|. +.+.+
T Consensus 196 ~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~-i~Ad~VV~AAGawS~~La~~~ 254 (497)
T PRK13339 196 SHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKRE-QVADYVFIGAGGGAIPLLQKS 254 (497)
T ss_pred hCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEE-EEcCEEEECCCcchHHHHHHc
Confidence 4468999999999999887 66777753 21453223 899999999999994 44444
No 84
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.05 E-value=5.3e-09 Score=106.05 Aligned_cols=154 Identities=14% Similarity=0.172 Sum_probs=85.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccC---------HHHHHHHHHC---C-----
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALS---------VRGREALRRI---G----- 68 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~---------~~~~~~l~~l---G----- 68 (379)
++||||||+|.+|+++|+.+++.|.+|+||||.+.....+...+.++...-+ ....++++.+ +
T Consensus 61 ~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~d 140 (506)
T PRK06481 61 KYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTND 140 (506)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCCC
Confidence 6899999999999999999999999999999998654322222222210000 0001112111 0
Q ss_pred -------------ChHHHHhCCCCceeeEEEecCCcE---EEeeCCC-CCcH------HHHhcCCCCeEEeCceEEEEEe
Q psy9141 69 -------------LEDKLLAHGIPMRARMIHGQNGKL---REIPYDP-VHNQ------VELEQYPDCNIYFQHKLINLDV 125 (379)
Q Consensus 69 -------------l~~~l~~~~~~~~~~~~~~~~g~~---~~~~~~~-~~~~------~~~~~~~gv~i~~~~~v~~i~~ 125 (379)
..+.+.+.+.++.... ...+.. ...+... ..+. ....+..+++++++++|+++..
T Consensus 141 ~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~--~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~ 218 (506)
T PRK06481 141 KALLRYFVDNSASAIDWLDSMGIKLDNLT--ITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITE 218 (506)
T ss_pred HHHHHHHHhccHHHHHHHHHcCceEeecc--cCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEe
Confidence 0111222222221110 001110 0111110 1111 2223346899999999999987
Q ss_pred cCCeE---EEEEccCCceeEEEeecEEEecCCCChHHHHHh
Q psy9141 126 NSGNV---TFYRTEDNSETKITDNQLIIGADGAYSGVRKCL 163 (379)
Q Consensus 126 ~~~~v---~v~~~~~G~~~~~i~adlVV~AdG~~S~vr~~l 163 (379)
+++.+ .+... +|+..+ +.|+.||.|+|.++.-.+.+
T Consensus 219 ~~g~V~Gv~~~~~-~g~~~~-i~a~~VVlAtGG~~~n~~m~ 257 (506)
T PRK06481 219 KDGKVTGVKVKIN-GKETKT-ISSKAVVVTTGGFGANKDMI 257 (506)
T ss_pred cCCEEEEEEEEeC-CCeEEE-EecCeEEEeCCCcccCHHHH
Confidence 66643 34444 555456 99999999999988655444
No 85
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.04 E-value=3.9e-09 Score=108.67 Aligned_cols=153 Identities=15% Similarity=0.150 Sum_probs=86.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCccccccc---------------------CHHHH
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDIRNSGLSEGKSINLAL---------------------SVRGR 61 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~~~~~~~~g~~i~~al---------------------~~~~~ 61 (379)
.++||+|||||.|||++|+.+++. |.+|+|+||.......+...+.++...+ .+...
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v 82 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLCEQDVV 82 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChhhccchhhhhcCCCCCHHHHHHHHHHhcccCCCHHHH
Confidence 358999999999999999999987 5799999998755433222222221111 11111
Q ss_pred HHHHHC--CChHHHHhCCCCcee-----eEEEecCCcE--EEeeCCCCCcH-------HHHhcCCCCeEEeCceEEEEEe
Q psy9141 62 EALRRI--GLEDKLLAHGIPMRA-----RMIHGQNGKL--REIPYDPVHNQ-------VELEQYPDCNIYFQHKLINLDV 125 (379)
Q Consensus 62 ~~l~~l--Gl~~~l~~~~~~~~~-----~~~~~~~g~~--~~~~~~~~~~~-------~~~~~~~gv~i~~~~~v~~i~~ 125 (379)
+.|-+- ...+.+.+.+.++.. +......+.. .........+. ....+.++++++.++.++++..
T Consensus 83 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~ 162 (582)
T PRK09231 83 EYFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQRFDEHFVLDILV 162 (582)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCCCceeeeccccccCCeeEecCCCcHHHHHHHHHHHhhcCCCcEEEeCeEEEEEEE
Confidence 111100 011223334444421 0001111111 01111111121 2233446899999999999987
Q ss_pred cCCeEE----EEEccCCceeEEEeecEEEecCCCChHH
Q psy9141 126 NSGNVT----FYRTEDNSETKITDNQLIIGADGAYSGV 159 (379)
Q Consensus 126 ~~~~v~----v~~~~~G~~~~~i~adlVV~AdG~~S~v 159 (379)
+++.+. +... +|+... +.|+.||.|+|.+|.+
T Consensus 163 ~~g~v~Gv~~~~~~-~g~~~~-i~AkaVIlATGG~~~l 198 (582)
T PRK09231 163 DDGHVRGLVAMNMM-EGTLVQ-IRANAVVMATGGAGRV 198 (582)
T ss_pred eCCEEEEEEEEEcC-CCcEEE-EECCEEEECCCCCcCC
Confidence 766544 2334 676555 9999999999999965
No 86
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.04 E-value=4.3e-09 Score=108.42 Aligned_cols=154 Identities=18% Similarity=0.132 Sum_probs=85.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCC---CcEEEEccCCCCCCCCCCCCcccccccCH---HHH-----HHHHHC-C----
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQ---YEVNLYEAREDIRNSGLSEGKSINLALSV---RGR-----EALRRI-G---- 68 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G---~~V~viE~~~~~~~~~~~~g~~i~~al~~---~~~-----~~l~~l-G---- 68 (379)
.++||+|||+|+|||++|+.+++.| .+|+|+||.+.....+...+.++...+.+ .+. .+++.- +
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~~~g~~~~d~ 83 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTVKGSDFLADQ 83 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHHHHHHHHHhhcccCCH
Confidence 4689999999999999999999998 89999999986544322222222211211 011 111100 0
Q ss_pred ------------ChHHHHhCCCCcee-----eEEEecCCcE-EEeeCCC-CCcH-------HHHhcCCCCeEEeCceEEE
Q psy9141 69 ------------LEDKLLAHGIPMRA-----RMIHGQNGKL-REIPYDP-VHNQ-------VELEQYPDCNIYFQHKLIN 122 (379)
Q Consensus 69 ------------l~~~l~~~~~~~~~-----~~~~~~~g~~-~~~~~~~-~~~~-------~~~~~~~gv~i~~~~~v~~ 122 (379)
..+.+.+.+.++.. .......+.. .+..+.. ..+. ..+.+..+++++.++.+++
T Consensus 84 ~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~d~tG~~i~~~L~~~~~~~~gv~i~~~~~v~~ 163 (577)
T PRK06069 84 DAVEVFVREAPEEIRFLDHWGVPWSRRPDGRISQRPFGGMSFPRTTFAADKTGFYIMHTLYSRALRFDNIHFYDEHFVTS 163 (577)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeEecCCCcEeeeecCCcccceeeEcCCCchHHHHHHHHHHHHhcCCCEEEECCEEEE
Confidence 11222233333321 0000011111 0111111 0111 2233446899999999999
Q ss_pred EEecCCeEE---E-EEccCCceeEEEeecEEEecCCCChHHH
Q psy9141 123 LDVNSGNVT---F-YRTEDNSETKITDNQLIIGADGAYSGVR 160 (379)
Q Consensus 123 i~~~~~~v~---v-~~~~~G~~~~~i~adlVV~AdG~~S~vr 160 (379)
+..+++.+. + ... +|+... +.|+.||.|+|..+.+.
T Consensus 164 Li~~~g~v~Gv~~~~~~-~g~~~~-i~Ak~VIlATGG~~~~~ 203 (577)
T PRK06069 164 LIVENGVFKGVTAIDLK-RGEFKV-FQAKAGIIATGGAGRLY 203 (577)
T ss_pred EEEECCEEEEEEEEEcC-CCeEEE-EECCcEEEcCchhcccC
Confidence 987666543 2 223 666445 89999999999997643
No 87
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.03 E-value=2.5e-09 Score=107.48 Aligned_cols=35 Identities=17% Similarity=0.483 Sum_probs=32.1
Q ss_pred CcEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDI 41 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~ 41 (379)
+||+|||||++|+++|+.|++. |.+|+|+||.+.+
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~ 37 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAV 37 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcc
Confidence 5999999999999999999997 9999999997643
No 88
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.03 E-value=2.6e-09 Score=107.36 Aligned_cols=47 Identities=11% Similarity=0.212 Sum_probs=38.1
Q ss_pred CeEEeCceEEEEEec-CCeEEEEEccCCceeEEEeecEEEecCCCChH-HHHHh
Q psy9141 112 CNIYFQHKLINLDVN-SGNVTFYRTEDNSETKITDNQLIIGADGAYSG-VRKCL 163 (379)
Q Consensus 112 v~i~~~~~v~~i~~~-~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~-vr~~l 163 (379)
++|+++++|++++.+ ++.+.|++. +| + ++||.||.|.|.+|. +.+.+
T Consensus 232 v~i~~~t~V~~I~~~~~~~~~V~T~-~G-~---i~A~~VVvaAG~~S~~La~~~ 280 (497)
T PTZ00383 232 ISINLNTEVLNIERSNDSLYKIHTN-RG-E---IRARFVVVSACGYSLLFAQKM 280 (497)
T ss_pred EEEEeCCEEEEEEecCCCeEEEEEC-CC-E---EEeCEEEECcChhHHHHHHHh
Confidence 789999999999987 446778776 67 3 899999999999995 44443
No 89
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.03 E-value=6.2e-09 Score=105.15 Aligned_cols=154 Identities=14% Similarity=0.178 Sum_probs=83.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccC---------------------HHHHHHH
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALS---------------------VRGREAL 64 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~---------------------~~~~~~l 64 (379)
++||+|||+|+|||++|+.+++.|. |+|+||.+.....+...+.++...+. +...+.+
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~ 80 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV 80 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 4799999999999999999999997 99999997544322222222211111 1111111
Q ss_pred HHC--CChHHHHhCCCCceee-----EEEecCCcE--EEeeCCCCCcH-------HHHhcCCCCeEEeCceEEEEEecCC
Q psy9141 65 RRI--GLEDKLLAHGIPMRAR-----MIHGQNGKL--REIPYDPVHNQ-------VELEQYPDCNIYFQHKLINLDVNSG 128 (379)
Q Consensus 65 ~~l--Gl~~~l~~~~~~~~~~-----~~~~~~g~~--~~~~~~~~~~~-------~~~~~~~gv~i~~~~~v~~i~~~~~ 128 (379)
-+- ...+.+...+.++... ......+.. ..+......+. ..+.+.+++++++++.++++..+++
T Consensus 81 ~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g 160 (488)
T TIGR00551 81 VSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIETG 160 (488)
T ss_pred HHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeeccCC
Confidence 000 0112222233333210 000011111 11111111111 2333347999999999999987666
Q ss_pred eEE-EEEccCCceeEEEeecEEEecCCCChHHHH
Q psy9141 129 NVT-FYRTEDNSETKITDNQLIIGADGAYSGVRK 161 (379)
Q Consensus 129 ~v~-v~~~~~G~~~~~i~adlVV~AdG~~S~vr~ 161 (379)
.+. +.....++..+ +.|+.||.|+|.+|.+..
T Consensus 161 ~v~Gv~~~~~~~~~~-i~A~~VVlAtGG~~~~~~ 193 (488)
T TIGR00551 161 RVVGVWVWNRETVET-CHADAVVLATGGAGKLYQ 193 (488)
T ss_pred EEEEEEEEECCcEEE-EEcCEEEECCCcccCCCC
Confidence 554 43331243334 899999999999997543
No 90
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.01 E-value=5.9e-09 Score=107.35 Aligned_cols=154 Identities=19% Similarity=0.224 Sum_probs=83.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCcccccccC----HHH-----------------
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDIRNSGLSEGKSINLALS----VRG----------------- 60 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~~~~~~~~g~~i~~al~----~~~----------------- 60 (379)
|.++||+|||||+|||++|+.+++. |.+|+|+||.+.....+...+.++...++ ..+
T Consensus 1 ~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~~~ds~e~~~~d~~~~~~~l~d 80 (575)
T PRK05945 1 MLEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSDYLAD 80 (575)
T ss_pred CCcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccchhhhccCCCCCCCHHHHHHHHHHHhCCCCC
Confidence 4568999999999999999999987 48999999987544222111112211110 011
Q ss_pred ---HHHHHHCC--ChHHHHhCCCCceee-----EEEecCCcE-EEeeCCC-CCcH------HHHhcCCCCeEEeCceEEE
Q psy9141 61 ---REALRRIG--LEDKLLAHGIPMRAR-----MIHGQNGKL-REIPYDP-VHNQ------VELEQYPDCNIYFQHKLIN 122 (379)
Q Consensus 61 ---~~~l~~lG--l~~~l~~~~~~~~~~-----~~~~~~g~~-~~~~~~~-~~~~------~~~~~~~gv~i~~~~~v~~ 122 (379)
.+.|.+-. ..+.+.+.+.++... ......+.. .+..+.. ..+. .......+++++.++.+++
T Consensus 81 ~~~v~~l~~~a~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~gi~i~~~t~v~~ 160 (575)
T PRK05945 81 QDAVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGGHSHNRTCYAADKTGHAILHELVNNLRRYGVTIYDEWYVMR 160 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCceEECCCCcEeeccccccccCeeEecCCCChHHHHHHHHHHHhhCCCEEEeCcEEEE
Confidence 11111000 112222334433210 000001111 1111111 1111 1222346899999999999
Q ss_pred EEecCCeEE----EEEccCCceeEEEeecEEEecCCCChHH
Q psy9141 123 LDVNSGNVT----FYRTEDNSETKITDNQLIIGADGAYSGV 159 (379)
Q Consensus 123 i~~~~~~v~----v~~~~~G~~~~~i~adlVV~AdG~~S~v 159 (379)
+..+++.+. +... +|+..+ +.|+.||.|+|.++.+
T Consensus 161 L~~~~g~v~Gv~~~~~~-~g~~~~-i~AkaVVlATGG~~~~ 199 (575)
T PRK05945 161 LILEDNQAKGVVMYHIA-DGRLEV-VRAKAVMFATGGYGRV 199 (575)
T ss_pred EEEECCEEEEEEEEEcC-CCeEEE-EECCEEEECCCCCcCC
Confidence 887666433 2334 666555 8999999999999854
No 91
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.01 E-value=4.3e-09 Score=105.65 Aligned_cols=49 Identities=8% Similarity=0.119 Sum_probs=42.0
Q ss_pred cCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141 108 QYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVR 160 (379)
Q Consensus 108 ~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr 160 (379)
+..+++++.+++|++++.+++++.+++. +|++ +++|.||.|.|+.+.+.
T Consensus 227 ~~~gI~v~~~~~v~~i~~~~~~~~v~~~-~g~~---i~~D~vi~a~G~~p~~~ 275 (461)
T PRK05249 227 RDSGVTIRHNEEVEKVEGGDDGVIVHLK-SGKK---IKADCLLYANGRTGNTD 275 (461)
T ss_pred HHcCCEEEECCEEEEEEEeCCeEEEEEC-CCCE---EEeCEEEEeecCCcccc
Confidence 3468999999999999887778888777 7876 99999999999998765
No 92
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.01 E-value=2e-09 Score=107.62 Aligned_cols=150 Identities=11% Similarity=0.155 Sum_probs=81.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccc--cccCHHHHHHHHHCCChHHHHhCCCCce
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSIN--LALSVRGREALRRIGLEDKLLAHGIPMR 81 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~--~al~~~~~~~l~~lGl~~~l~~~~~~~~ 81 (379)
++..+|+||||||+||++|..|.+.|++|+|+|+++..+........... +.+.+.. .... -.+++.+.. ..+-.
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~-~~~~-s~~Y~~L~t-n~p~~ 84 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTR-SIVH-SSVYESLRT-NLPRE 84 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCC-cccc-hhhhhhhhc-cCCHh
Confidence 34689999999999999999999999999999999876533222111000 0000000 0000 001111110 00100
Q ss_pred eeEEEecCCcE-----EEeeCCCCCcH------HHHhcCCCCe--EEeCceEEEEEecCCeEEEEEccCC--ceeEEEee
Q psy9141 82 ARMIHGQNGKL-----REIPYDPVHNQ------VELEQYPDCN--IYFQHKLINLDVNSGNVTFYRTEDN--SETKITDN 146 (379)
Q Consensus 82 ~~~~~~~~g~~-----~~~~~~~~~~~------~~~~~~~gv~--i~~~~~v~~i~~~~~~v~v~~~~~G--~~~~~i~a 146 (379)
-+.+.+..... ....-..+.++ +..++.-++. |+++++|++++..+++|+|++. ++ ...+ ..+
T Consensus 85 ~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~-~~~~~~~~-~~~ 162 (461)
T PLN02172 85 CMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSK-NSGGFSKD-EIF 162 (461)
T ss_pred hccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEE-cCCCceEE-EEc
Confidence 01111100000 00000011111 2333445666 8999999999988888998876 33 3223 679
Q ss_pred cEEEecCCCChH
Q psy9141 147 QLIIGADGAYSG 158 (379)
Q Consensus 147 dlVV~AdG~~S~ 158 (379)
|.||.|+|.++.
T Consensus 163 d~VIvAtG~~~~ 174 (461)
T PLN02172 163 DAVVVCNGHYTE 174 (461)
T ss_pred CEEEEeccCCCC
Confidence 999999998764
No 93
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.00 E-value=8.2e-09 Score=106.23 Aligned_cols=151 Identities=18% Similarity=0.156 Sum_probs=81.6
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccC---H-HHHH-----HHHH-CC---------
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALS---V-RGRE-----ALRR-IG--------- 68 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~---~-~~~~-----~l~~-lG--------- 68 (379)
||+|||||++|+++|+.+++.|.+|+|+||.+.....+...+.++...+. + .+.+ +++. -+
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~~~~d~~e~~~~d~~~~~~~~~d~~~v~~ 80 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLADQDAVEY 80 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcchhhccCeEeecCCCCCCccHHHHHHHHHHHhCCCCCHHHHHH
Confidence 89999999999999999999999999999987543221111111111111 0 1111 1000 00
Q ss_pred -------ChHHHHhCCCCcee-----eEEEecCCcE-EEeeCCCC-CcH------HHHhcCCCCeEEeCceEEEEEecCC
Q psy9141 69 -------LEDKLLAHGIPMRA-----RMIHGQNGKL-REIPYDPV-HNQ------VELEQYPDCNIYFQHKLINLDVNSG 128 (379)
Q Consensus 69 -------l~~~l~~~~~~~~~-----~~~~~~~g~~-~~~~~~~~-~~~------~~~~~~~gv~i~~~~~v~~i~~~~~ 128 (379)
..+.+.+.+.++.. .......+.. .+..+... .+. .......++++++++.++++..+++
T Consensus 81 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~g 160 (566)
T TIGR01812 81 MCQEAPKAILELEHWGVPFSRTPDGRIAQRPFGGHSKDRTCYAADKTGHALLHTLYEQCLKLGVSFFNEYFALDLIHDDG 160 (566)
T ss_pred HHHHHHHHHHHHHHcCCcceecCCCcEeeccccccccCeeEECCCCCHHHHHHHHHHHHHHcCCEEEeccEEEEEEEeCC
Confidence 11222223333321 0000001110 01111111 111 1112234999999999999987766
Q ss_pred eEE-EE---EccCCceeEEEeecEEEecCCCChHHH
Q psy9141 129 NVT-FY---RTEDNSETKITDNQLIIGADGAYSGVR 160 (379)
Q Consensus 129 ~v~-v~---~~~~G~~~~~i~adlVV~AdG~~S~vr 160 (379)
.+. +. .. +|+..+ +.|+.||.|+|.+|.+.
T Consensus 161 ~v~Gv~~~~~~-~g~~~~-i~Ak~VVlAtGG~~~~~ 194 (566)
T TIGR01812 161 RVRGVVAYDLK-TGEIVF-FRAKAVVLATGGYGRIY 194 (566)
T ss_pred EEEEEEEEECC-CCcEEE-EECCeEEECCCcccCCC
Confidence 554 22 23 666545 89999999999998654
No 94
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.00 E-value=9.6e-09 Score=102.43 Aligned_cols=36 Identities=33% Similarity=0.345 Sum_probs=33.4
Q ss_pred cEEEECCChHHHHHHHHHHhCC-CcEEEEccCCCCCC
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQ-YEVNLYEAREDIRN 43 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G-~~V~viE~~~~~~~ 43 (379)
||||||||++|+++|+.++++| .+|+|+||.+....
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg 37 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGG 37 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCC
Confidence 8999999999999999999999 99999999986543
No 95
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.99 E-value=1.2e-08 Score=105.03 Aligned_cols=152 Identities=15% Similarity=0.131 Sum_probs=86.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCccccccc---------------------CHHHHH
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDIRNSGLSEGKSINLAL---------------------SVRGRE 62 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~~~~~~~~g~~i~~al---------------------~~~~~~ 62 (379)
++||+|||||+|||++|+.+++. |.+|+|+||...........+.++.... .+...+
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~lv~ 82 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDVVE 82 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHHHH
Confidence 58999999999999999999987 6899999999765443222222221011 011111
Q ss_pred HHHHCC--ChHHHHhCCCCceee-----EEEecCCcE-EEeeC-CCCCcH-------HHHhcCCCCeEEeCceEEEEEec
Q psy9141 63 ALRRIG--LEDKLLAHGIPMRAR-----MIHGQNGKL-REIPY-DPVHNQ-------VELEQYPDCNIYFQHKLINLDVN 126 (379)
Q Consensus 63 ~l~~lG--l~~~l~~~~~~~~~~-----~~~~~~g~~-~~~~~-~~~~~~-------~~~~~~~gv~i~~~~~v~~i~~~ 126 (379)
.|-+-. ..+.+.+.+.++... ......+.. .+..+ ....+. +.+.+.++++++.++.++++..+
T Consensus 83 ~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~ 162 (580)
T TIGR01176 83 YFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVD 162 (580)
T ss_pred HHHHHhHHHHHHHHHcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEEEEEee
Confidence 111110 112333334444210 011111111 01111 111122 23334468999999999999887
Q ss_pred CCeEE----EEEccCCceeEEEeecEEEecCCCChHH
Q psy9141 127 SGNVT----FYRTEDNSETKITDNQLIIGADGAYSGV 159 (379)
Q Consensus 127 ~~~v~----v~~~~~G~~~~~i~adlVV~AdG~~S~v 159 (379)
++.+. +... +|+... +.|+.||.|+|.+|.+
T Consensus 163 ~g~v~Gv~~~~~~-~g~~~~-i~AkaVILATGG~~~~ 197 (580)
T TIGR01176 163 DGRVCGLVAIEMA-EGRLVT-ILADAVVLATGGAGRV 197 (580)
T ss_pred CCEEEEEEEEEcC-CCcEEE-EecCEEEEcCCCCccc
Confidence 66554 2334 676556 8999999999999964
No 96
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.99 E-value=1.9e-09 Score=108.08 Aligned_cols=36 Identities=33% Similarity=0.444 Sum_probs=33.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDI 41 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~ 41 (379)
++||+|||||++|+++|+.|+++ |.+|+|+|++...
T Consensus 24 ~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~g 61 (460)
T TIGR03329 24 QADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCG 61 (460)
T ss_pred eeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCccc
Confidence 47999999999999999999998 9999999998654
No 97
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.98 E-value=7.3e-09 Score=100.67 Aligned_cols=35 Identities=26% Similarity=0.406 Sum_probs=32.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~ 41 (379)
+||+|||||++|+++|+.|++.|.+|+|+|+....
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~~ 35 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSRA 35 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 59999999999999999999999999999998754
No 98
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.97 E-value=1.4e-08 Score=100.97 Aligned_cols=151 Identities=16% Similarity=0.186 Sum_probs=81.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCccccccc--------------------CHHHHHHH
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLAL--------------------SVRGREAL 64 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al--------------------~~~~~~~l 64 (379)
.++||+|||+|.|||++|+.++ .|.+|+|+||.+.....+...+.++.... .+...+.+
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~s~~a~ggi~~~~~~d~~~~~~~d~~~~g~~~~d~~lv~~~ 81 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECNTYLAQGGISVARNKDDITSFVEDTLKAGQYENNLEAVKIL 81 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCchHHHhHhheeCCCCCCHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 4689999999999999999975 79999999998765433222222221000 01111111
Q ss_pred HH-C-CChHHHHhCCCCcee----eEEEecCCcE--EEeeCCCCCcH-------HHHhcCCCCeEEeCceEEEEEecCCe
Q psy9141 65 RR-I-GLEDKLLAHGIPMRA----RMIHGQNGKL--REIPYDPVHNQ-------VELEQYPDCNIYFQHKLINLDVNSGN 129 (379)
Q Consensus 65 ~~-l-Gl~~~l~~~~~~~~~----~~~~~~~g~~--~~~~~~~~~~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~ 129 (379)
-+ . ...+.+.+.+.++.. ..+....+.. .........+. ..+.+..+++|++++.++++..+++.
T Consensus 82 ~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~ 161 (433)
T PRK06175 82 ANESIENINKLIDMGLNFDKDEKELSYTKEGAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIENDNT 161 (433)
T ss_pred HHHHHHHHHHHHHcCCccccCCCceeeeccCccccCeEEecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEecCCE
Confidence 00 0 011222222322211 0111111111 11111111111 23334569999999999998876665
Q ss_pred EE-EE-EccCCceeEEEeecEEEecCCCChH
Q psy9141 130 VT-FY-RTEDNSETKITDNQLIIGADGAYSG 158 (379)
Q Consensus 130 v~-v~-~~~~G~~~~~i~adlVV~AdG~~S~ 158 (379)
+. +. .. +|+..+ +.|+.||.|+|..+.
T Consensus 162 v~Gv~~~~-~g~~~~-i~Ak~VILAtGG~~~ 190 (433)
T PRK06175 162 CIGAICLK-DNKQIN-IYSKVTILATGGIGG 190 (433)
T ss_pred EEEEEEEE-CCcEEE-EEcCeEEEccCcccc
Confidence 43 22 33 555445 899999999999774
No 99
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.96 E-value=8.9e-09 Score=101.59 Aligned_cols=37 Identities=32% Similarity=0.314 Sum_probs=33.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHhC-CC-cEEEEccCCCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKN-QY-EVNLYEAREDI 41 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~-G~-~V~viE~~~~~ 41 (379)
+++||+|||||++|+++|++|+++ |. +|+|+||....
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~ 67 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLG 67 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccccc
Confidence 468999999999999999999995 95 89999998644
No 100
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.96 E-value=1.9e-08 Score=101.09 Aligned_cols=36 Identities=28% Similarity=0.280 Sum_probs=34.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED 40 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~ 40 (379)
.++||||||+|++|+++|+.+++.|.+|+||||.+.
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~ 38 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPR 38 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 568999999999999999999999999999999874
No 101
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.96 E-value=3.7e-09 Score=104.52 Aligned_cols=47 Identities=19% Similarity=0.206 Sum_probs=38.0
Q ss_pred hcCCCCeEEeCceEEEEEecCCeEE-EEEccCCceeEEEeecEEEecCCCChH
Q psy9141 107 EQYPDCNIYFQHKLINLDVNSGNVT-FYRTEDNSETKITDNQLIIGADGAYSG 158 (379)
Q Consensus 107 ~~~~gv~i~~~~~v~~i~~~~~~v~-v~~~~~G~~~~~i~adlVV~AdG~~S~ 158 (379)
....|++|+++++|++++.+++++. +++. ++ + ++||.||.|+|.+|.
T Consensus 211 ~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~-~~-~---~~a~~VV~a~G~~~~ 258 (416)
T PRK00711 211 AEQLGVKFRFNTPVDGLLVEGGRITGVQTG-GG-V---ITADAYVVALGSYST 258 (416)
T ss_pred HHHCCCEEEcCCEEEEEEecCCEEEEEEeC-Cc-E---EeCCEEEECCCcchH
Confidence 3446999999999999998877764 5554 44 4 899999999999984
No 102
>PLN02661 Putative thiazole synthesis
Probab=98.95 E-value=1.3e-08 Score=96.76 Aligned_cols=137 Identities=18% Similarity=0.232 Sum_probs=81.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHhC-CCcEEEEccCCCCCCCCCCCCccc--ccccCHHHHHHHHHCCChHHHHhCCCCce
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKN-QYEVNLYEAREDIRNSGLSEGKSI--NLALSVRGREALRRIGLEDKLLAHGIPMR 81 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~-G~~V~viE~~~~~~~~~~~~g~~i--~~al~~~~~~~l~~lGl~~~l~~~~~~~~ 81 (379)
.++||+|||||++|+++|+.|++. |++|+|+||...+... .+.+... ...+.....++|+++|+. +.
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG-~~~gg~l~~~~vv~~~a~e~LeElGV~---------fd 160 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGG-AWLGGQLFSAMVVRKPAHLFLDELGVP---------YD 160 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccc-eeeCcccccccccccHHHHHHHHcCCC---------cc
Confidence 468999999999999999999986 8999999998765421 1111110 001222345667777652 11
Q ss_pred eeEEEecCCcEEEeeCCCCC-cH--HHHhcCCCCeEEeCceEEEEEecCCeEE-EE------Ec-cCC----ceeEEEee
Q psy9141 82 ARMIHGQNGKLREIPYDPVH-NQ--VELEQYPDCNIYFQHKLINLDVNSGNVT-FY------RT-EDN----SETKITDN 146 (379)
Q Consensus 82 ~~~~~~~~g~~~~~~~~~~~-~~--~~~~~~~gv~i~~~~~v~~i~~~~~~v~-v~------~~-~~G----~~~~~i~a 146 (379)
. .++ .......... .. ....+.++++++.++.++++..+++.+. +. .. .++ +... ++|
T Consensus 161 ~-----~dg-y~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~-I~A 233 (357)
T PLN02661 161 E-----QEN-YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNV-MEA 233 (357)
T ss_pred c-----CCC-eeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeE-EEC
Confidence 0 001 0000000000 01 3344557999999999999988776432 22 11 011 2234 899
Q ss_pred cEEEecCCCChH
Q psy9141 147 QLIIGADGAYSG 158 (379)
Q Consensus 147 dlVV~AdG~~S~ 158 (379)
+.||.|+|....
T Consensus 234 kaVVlATGh~g~ 245 (357)
T PLN02661 234 KVVVSSCGHDGP 245 (357)
T ss_pred CEEEEcCCCCCc
Confidence 999999996653
No 103
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.94 E-value=2.4e-08 Score=102.63 Aligned_cols=153 Identities=14% Similarity=0.166 Sum_probs=84.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccC-----HHHHH-----HHHH--------
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALS-----VRGRE-----ALRR-------- 66 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~-----~~~~~-----~l~~-------- 66 (379)
.++||+|||+|.|||++|+.+++.|.+|+|+||.+.....+...+.++...+. ..+.+ .++.
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~ 83 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQD 83 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCHH
Confidence 46899999999999999999999999999999987544332222222211110 01111 1100
Q ss_pred ----C-----CChHHHHhCCCCcee-----eEEEecCCcE-EEeeC-CCCCcH------HHHhcCCCCeEEeCceEEEEE
Q psy9141 67 ----I-----GLEDKLLAHGIPMRA-----RMIHGQNGKL-REIPY-DPVHNQ------VELEQYPDCNIYFQHKLINLD 124 (379)
Q Consensus 67 ----l-----Gl~~~l~~~~~~~~~-----~~~~~~~g~~-~~~~~-~~~~~~------~~~~~~~gv~i~~~~~v~~i~ 124 (379)
+ ...+.+...+.++.. .......+.. .+..+ ....+. .......+++++.++.++++.
T Consensus 84 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~~~~Li 163 (566)
T PRK06452 84 AAELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTSGLNVDFYNEWFSLDLV 163 (566)
T ss_pred HHHHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHHhCCCEEEeCcEEEEEE
Confidence 0 011223333443321 0000111111 01111 111121 111223589999999999998
Q ss_pred ecCCeEE-EE--EccCCceeEEEeecEEEecCCCChH
Q psy9141 125 VNSGNVT-FY--RTEDNSETKITDNQLIIGADGAYSG 158 (379)
Q Consensus 125 ~~~~~v~-v~--~~~~G~~~~~i~adlVV~AdG~~S~ 158 (379)
.+++.|. +. ..++|+... +.|+-||.|+|.++.
T Consensus 164 ~~~g~v~Gv~~~~~~~g~~~~-i~AkaVVLATGG~~~ 199 (566)
T PRK06452 164 TDNKKVVGIVAMQMKTLTPFF-FKTKAVVLATGGMGM 199 (566)
T ss_pred EECCEEEEEEEEECCCCeEEE-EEeCeEEECCCcccc
Confidence 8766554 22 221455555 899999999999984
No 104
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.93 E-value=9.3e-09 Score=106.60 Aligned_cols=39 Identities=28% Similarity=0.301 Sum_probs=35.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRN 43 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~ 43 (379)
.++||+|||||++|+++|+.|+++|++|+|||+.+....
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~G 108 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSG 108 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCC
Confidence 358999999999999999999999999999999965543
No 105
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.93 E-value=7.9e-09 Score=102.85 Aligned_cols=39 Identities=23% Similarity=0.455 Sum_probs=36.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCCc-EEEEccCCCCC
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKNQYE-VNLYEAREDIR 42 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~G~~-V~viE~~~~~~ 42 (379)
+..+||+|||||++|+++|+.|.+.|.+ ++|+||+....
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~G 45 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVG 45 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcC
Confidence 4578999999999999999999999998 99999998664
No 106
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.93 E-value=2.2e-08 Score=102.39 Aligned_cols=38 Identities=21% Similarity=0.199 Sum_probs=35.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR 42 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~ 42 (379)
.++||+|||+|.|||++|+.+++.|.+|+|+||.+...
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~ 52 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDD 52 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCC
Confidence 36899999999999999999999999999999998654
No 107
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.93 E-value=1.1e-08 Score=101.21 Aligned_cols=150 Identities=23% Similarity=0.285 Sum_probs=77.8
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccC---------HHH----HHHHHHCC------
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALS---------VRG----REALRRIG------ 68 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~---------~~~----~~~l~~lG------ 68 (379)
||+|||+|++||++|+.+++.|.+|+||||.+.........+..+...-+ ... ..+++...
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLNDPD 80 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-HH
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccccccccc
Confidence 89999999999999999999999999999998733221111111111000 001 11122221
Q ss_pred -----------ChHHHHhCCCCcee-----eEEEecCCcE-E-EeeCCCC--------CcH------HHHhcCCCCeEEe
Q psy9141 69 -----------LEDKLLAHGIPMRA-----RMIHGQNGKL-R-EIPYDPV--------HNQ------VELEQYPDCNIYF 116 (379)
Q Consensus 69 -----------l~~~l~~~~~~~~~-----~~~~~~~g~~-~-~~~~~~~--------~~~------~~~~~~~gv~i~~ 116 (379)
..+.+.+.+.++.. .......+.. . ...+... .+. ....+..+++|++
T Consensus 81 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv~i~~ 160 (417)
T PF00890_consen 81 LVRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEAGVDIRF 160 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHTTEEEEE
T ss_pred hhhhhhhcccceehhhhhhcccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhhcCeeeec
Confidence 01122223333222 1111111100 0 1111111 111 2223335799999
Q ss_pred CceEEEEEecCCeEE-EEEc--cCCceeEEEeecEEEecCCCChH
Q psy9141 117 QHKLINLDVNSGNVT-FYRT--EDNSETKITDNQLIIGADGAYSG 158 (379)
Q Consensus 117 ~~~v~~i~~~~~~v~-v~~~--~~G~~~~~i~adlVV~AdG~~S~ 158 (379)
+++++++..+++.|+ +... .+|+..+ +.|+-||.|+|.++.
T Consensus 161 ~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~-i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 161 NTRVTDLITEDGRVTGVVAENPADGEFVR-IKAKAVILATGGFGG 204 (417)
T ss_dssp SEEEEEEEEETTEEEEEEEEETTTCEEEE-EEESEEEE----BGG
T ss_pred cceeeeEEEeCCceeEEEEEECCCCeEEE-EeeeEEEeccCcccc
Confidence 999999999887655 3322 3788777 999999999999995
No 108
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.92 E-value=3.2e-08 Score=102.29 Aligned_cols=37 Identities=24% Similarity=0.208 Sum_probs=34.1
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR 42 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~ 42 (379)
++||+|||||+|||++|+.+++.|.+|+|+||.....
T Consensus 12 ~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~ 48 (598)
T PRK09078 12 KYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTR 48 (598)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence 5899999999999999999999999999999987543
No 109
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.91 E-value=9e-09 Score=103.84 Aligned_cols=39 Identities=26% Similarity=0.467 Sum_probs=35.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR 42 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~ 42 (379)
|+.+||||||||+.||++|..|+++|++|+|+||++.+.
T Consensus 1 ~~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~G 39 (487)
T COG1233 1 MPMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVG 39 (487)
T ss_pred CCCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCC
Confidence 346899999999999999999999999999999998765
No 110
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.91 E-value=2e-08 Score=101.86 Aligned_cols=151 Identities=16% Similarity=0.246 Sum_probs=83.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCH-HHH-----HHHHHC-----------
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSV-RGR-----EALRRI----------- 67 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~-~~~-----~~l~~l----------- 67 (379)
+.+||+|||+|.|||++|+.+++ |.+|+|+||.+.....+...+.++...+.+ .+. .+++.-
T Consensus 2 ~~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~ 80 (510)
T PRK08071 2 PSADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNERAVRY 80 (510)
T ss_pred CccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCHHHHHH
Confidence 46899999999999999999987 899999999986554433223333222211 000 111100
Q ss_pred ------CChHHHHhCCCCcee-----eEEEecCCcE-EEeeC--CCCCcH-----HHHhcCCCCeEEeCceEEEEEecCC
Q psy9141 68 ------GLEDKLLAHGIPMRA-----RMIHGQNGKL-REIPY--DPVHNQ-----VELEQYPDCNIYFQHKLINLDVNSG 128 (379)
Q Consensus 68 ------Gl~~~l~~~~~~~~~-----~~~~~~~g~~-~~~~~--~~~~~~-----~~~~~~~gv~i~~~~~v~~i~~~~~ 128 (379)
...+.+.+.+.++.. .......+.. .+..+ +...+. .......+++++.++.++++..+++
T Consensus 81 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~~gV~i~~~~~v~~Li~~~g 160 (510)
T PRK08071 81 LVEEGPKEIQELIENGMPFDGDETGPLHLGKEGAHRKRRILHAGGDATGKNLLEHLLQELVPHVTVVEQEMVIDLIIENG 160 (510)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCCceeeccCcCccCCeEEecCCCCcHHHHHHHHHHHHhcCCEEEECeEhhheeecCC
Confidence 011223333444321 0111111111 01111 111121 1111125899999999999877666
Q ss_pred eEE---EEEccCCceeEEEeecEEEecCCCChH
Q psy9141 129 NVT---FYRTEDNSETKITDNQLIIGADGAYSG 158 (379)
Q Consensus 129 ~v~---v~~~~~G~~~~~i~adlVV~AdG~~S~ 158 (379)
.+. +... +|+... +.|+.||.|+|.++.
T Consensus 161 ~v~Gv~~~~~-~g~~~~-i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 161 RCIGVLTKDS-EGKLKR-YYADYVVLASGGCGG 191 (510)
T ss_pred EEEEEEEEEC-CCcEEE-EEcCeEEEecCCCcc
Confidence 443 3333 565545 899999999999885
No 111
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.91 E-value=1.4e-08 Score=95.51 Aligned_cols=111 Identities=21% Similarity=0.297 Sum_probs=72.9
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH 86 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 86 (379)
|||+||||||+|+++|..|++.|++|+|||+.+ .. |. + .... .+. ..|. .. .
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~g------g~-~--~~~~-------------~~~--~~~~--~~-~ 52 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PG------GQ-L--TTTT-------------EVE--NYPG--FP-E 52 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CC------cc-e--eecc-------------ccc--ccCC--CC-C
Confidence 699999999999999999999999999999875 21 21 1 0000 000 0000 00 0
Q ss_pred ecCCcEEEeeCCCCCcH-HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141 87 GQNGKLREIPYDPVHNQ-VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS 157 (379)
Q Consensus 87 ~~~g~~~~~~~~~~~~~-~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S 157 (379)
...+. . .... ....+..++++++ ++|++++.+++.+++.+. +|.+ +++|.||.|+|...
T Consensus 53 ~~~~~------~-~~~~l~~~~~~~gv~~~~-~~v~~v~~~~~~~~v~~~-~~~~---~~~d~liiAtG~~~ 112 (300)
T TIGR01292 53 GISGP------E-LMEKMKEQAVKFGAEIIY-EEVIKVDLSDRPFKVKTG-DGKE---YTAKAVIIATGASA 112 (300)
T ss_pred CCChH------H-HHHHHHHHHHHcCCeEEE-EEEEEEEecCCeeEEEeC-CCCE---EEeCEEEECCCCCc
Confidence 00000 0 0001 2222335899998 899999988888888887 7776 99999999999865
No 112
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.89 E-value=5.9e-08 Score=100.14 Aligned_cols=41 Identities=29% Similarity=0.451 Sum_probs=36.3
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCC
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNS 44 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~ 44 (379)
|+++||+|||+|+|||++|+.+++.|.+|+|+||.+.....
T Consensus 1 ~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~ 41 (589)
T PRK08641 1 MAKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSH 41 (589)
T ss_pred CCCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence 45679999999999999999999999999999998865433
No 113
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.89 E-value=5.2e-09 Score=94.16 Aligned_cols=136 Identities=21% Similarity=0.245 Sum_probs=77.5
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCC--------CCCC-CcccccccCHH------HHHHHHHCCChHH
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNS--------GLSE-GKSINLALSVR------GREALRRIGLEDK 72 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~--------~~~~-g~~i~~al~~~------~~~~l~~lGl~~~ 72 (379)
+|+|||+||+|+++|..|+..|.+|+|+||....... +.+| |.. .+.++ ..+.+.+-|+.+.
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAq---Yfk~~~~~F~~~Ve~~~~~glV~~ 79 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQ---YFKPRDELFLRAVEALRDDGLVDV 79 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccce---eecCCchHHHHHHHHHHhCCceee
Confidence 7999999999999999999999999999999755311 0111 111 12222 2333333343221
Q ss_pred HHhCCCCceeeEEEecCCcEEEeeCCCCCcH--HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEE
Q psy9141 73 LLAHGIPMRARMIHGQNGKLREIPYDPVHNQ--VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLII 150 (379)
Q Consensus 73 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV 150 (379)
....-...++.. ...+....+|....+. .......+.+|.++++|+.+...++.|++.++ +|.. . ..+|.||
T Consensus 80 W~~~~~~~~~~~---~~~~~d~~pyvg~pgmsalak~LAtdL~V~~~~rVt~v~~~~~~W~l~~~-~g~~-~-~~~d~vv 153 (331)
T COG3380 80 WTPAVWTFTGDG---SPPRGDEDPYVGEPGMSALAKFLATDLTVVLETRVTEVARTDNDWTLHTD-DGTR-H-TQFDDVV 153 (331)
T ss_pred ccccccccccCC---CCCCCCCCccccCcchHHHHHHHhccchhhhhhhhhhheecCCeeEEEec-CCCc-c-cccceEE
Confidence 100000000000 0011012223322221 11122247889999999999999999999997 5543 2 6788888
Q ss_pred ec
Q psy9141 151 GA 152 (379)
Q Consensus 151 ~A 152 (379)
.|
T Consensus 154 la 155 (331)
T COG3380 154 LA 155 (331)
T ss_pred Ee
Confidence 77
No 114
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.89 E-value=3.9e-08 Score=101.92 Aligned_cols=151 Identities=18% Similarity=0.203 Sum_probs=84.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccC---HHHHH-----HHHH-----------
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALS---VRGRE-----ALRR----------- 66 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~---~~~~~-----~l~~----------- 66 (379)
++||+|||+|.|||++|+.+++.|.+|+|+||.+.....+...+.++...+. ..+.+ +++.
T Consensus 29 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~lv~ 108 (617)
T PTZ00139 29 TYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDAIQ 108 (617)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHHHH
Confidence 6899999999999999999999999999999997654432222223321111 11111 1110
Q ss_pred -C-----CChHHHHhCCCCceee---EEE--ecCCcE---------EEeeCCC-CCcH------HHHhcCCCCeEEeCce
Q psy9141 67 -I-----GLEDKLLAHGIPMRAR---MIH--GQNGKL---------REIPYDP-VHNQ------VELEQYPDCNIYFQHK 119 (379)
Q Consensus 67 -l-----Gl~~~l~~~~~~~~~~---~~~--~~~g~~---------~~~~~~~-~~~~------~~~~~~~gv~i~~~~~ 119 (379)
+ ...+.+.+.+.++... .+. ...+.. .+..+.. ..+. .......+++++.++.
T Consensus 109 ~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~~~ 188 (617)
T PTZ00139 109 YMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKYDCNFFIEYF 188 (617)
T ss_pred HHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhCCCEEEeceE
Confidence 0 0122333344444210 000 001110 0111100 0111 1223346899999999
Q ss_pred EEEEEe-cCCeEE---E-EEccCCceeEEEeecEEEecCCCChH
Q psy9141 120 LINLDV-NSGNVT---F-YRTEDNSETKITDNQLIIGADGAYSG 158 (379)
Q Consensus 120 v~~i~~-~~~~v~---v-~~~~~G~~~~~i~adlVV~AdG~~S~ 158 (379)
++++.. +++.+. + ... +|+... +.|+.||.|+|.++.
T Consensus 189 ~~~Li~~~~g~v~Gv~~~~~~-~g~~~~-i~AkaVVLATGG~~~ 230 (617)
T PTZ00139 189 ALDLIMDEDGECRGVIAMSME-DGSIHR-FRAHYTVIATGGYGR 230 (617)
T ss_pred EEEEEECCCCEEEEEEEEECC-CCeEEE-EECCcEEEeCCCCcc
Confidence 999876 445443 2 223 677666 899999999999874
No 115
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.89 E-value=4.3e-08 Score=101.08 Aligned_cols=154 Identities=16% Similarity=0.126 Sum_probs=85.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccC---HHH--------------------
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALS---VRG-------------------- 60 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~---~~~-------------------- 60 (379)
..++||+|||+|.|||++|+.+++.|.+|+|+||.......+...+.++..++. ..+
T Consensus 5 ~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~ 84 (588)
T PRK08958 5 VREFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDA 84 (588)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHHH
Confidence 346899999999999999999999999999999986544322211222211111 011
Q ss_pred HHHHHHC--CChHHHHhCCCCceee---EEE--ecCCcE--------EEeeCC-CCCcH------HHHhcCCCCeEEeCc
Q psy9141 61 REALRRI--GLEDKLLAHGIPMRAR---MIH--GQNGKL--------REIPYD-PVHNQ------VELEQYPDCNIYFQH 118 (379)
Q Consensus 61 ~~~l~~l--Gl~~~l~~~~~~~~~~---~~~--~~~g~~--------~~~~~~-~~~~~------~~~~~~~gv~i~~~~ 118 (379)
.+.+-+- ...+.+.+.+.++... .+. ...+.. .+..+. ...+. .......+++++.++
T Consensus 85 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~~gi~i~~~~ 164 (588)
T PRK08958 85 IEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEW 164 (588)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhhcCCEEEeCc
Confidence 1111100 1123333344444210 000 001110 011111 11122 122234689999999
Q ss_pred eEEEEEec-CCeEE---EE-EccCCceeEEEeecEEEecCCCChHH
Q psy9141 119 KLINLDVN-SGNVT---FY-RTEDNSETKITDNQLIIGADGAYSGV 159 (379)
Q Consensus 119 ~v~~i~~~-~~~v~---v~-~~~~G~~~~~i~adlVV~AdG~~S~v 159 (379)
.++++..+ ++.+. +. .. +|+... +.|+-||.|+|.++..
T Consensus 165 ~~~~Li~~~~g~v~Gv~~~~~~-~g~~~~-i~AkaVILATGG~~~~ 208 (588)
T PRK08958 165 YALDLVKNQDGAVVGCTAICIE-TGEVVY-FKARATVLATGGAGRI 208 (588)
T ss_pred EEEEEEECCCCEEEEEEEEEcC-CCcEEE-EEcCeEEECCCCcccc
Confidence 99998875 44433 22 33 677666 8999999999999853
No 116
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.89 E-value=3.9e-08 Score=102.07 Aligned_cols=38 Identities=18% Similarity=0.112 Sum_probs=34.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR 42 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~ 42 (379)
.++||+|||+|.||+++|+.+++.|.+|+||||.+...
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~ 44 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGK 44 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence 35899999999999999999999999999999987554
No 117
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=98.88 E-value=7.5e-09 Score=94.73 Aligned_cols=36 Identities=0% Similarity=-0.130 Sum_probs=33.4
Q ss_pred CCcEEEe-eecccCCCcchhhhhHHHHHHHHHHhhcc
Q psy9141 269 KNPIKIQ-SHAVVNEFYKQESLIVASLCQEKIEKMFD 304 (379)
Q Consensus 269 ~~~~liG-Ah~~~~P~~GQG~n~gl~Da~~L~~~l~~ 304 (379)
.+++++| |+.|.||.+||||+.|+.|+..|.+.|..
T Consensus 130 ~G~vllGDA~nmrHPLTGgGMTVAl~Dv~lL~~lL~~ 166 (276)
T PF08491_consen 130 PGVVLLGDAANMRHPLTGGGMTVALNDVVLLRDLLSP 166 (276)
T ss_pred CCEEEEehhhcCcCCccccchhhHHHHHHHHHHHHhh
Confidence 3799999 99999999999999999999999998875
No 118
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.88 E-value=1.1e-08 Score=98.63 Aligned_cols=139 Identities=22% Similarity=0.285 Sum_probs=78.7
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEE-ccCCCCCCCCCCCCcccccccC-HHHHHHHHHCC-ChHHHHhCCCCceeeE
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQYEVNLY-EAREDIRNSGLSEGKSINLALS-VRGREALRRIG-LEDKLLAHGIPMRARM 84 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~~V~vi-E~~~~~~~~~~~~g~~i~~al~-~~~~~~l~~lG-l~~~l~~~~~~~~~~~ 84 (379)
||+|||||+||+.+|+++|+.|.+|+++ ++.+.....+ +..++. .+. ....+.++.+| ..-.+.... . -..+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~--Cnpsig-g~~kg~L~~Eidalgg~m~~~aD~~-~-i~~~ 75 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMS--CNPSIG-GIAKGHLVREIDALGGLMGRAADET-G-IHFR 75 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--S--SSSEEE-STTHHHHHHHHHHTT-SHHHHHHHH-E-EEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeeccccccccc--chhhhc-cccccchhHHHhhhhhHHHHHHhHh-h-hhhh
Confidence 8999999999999999999999999999 4444333221 122221 111 22345556665 222222110 0 0122
Q ss_pred EEecC-C---cEEEeeCCCC-CcH---HHHhcCCCCeEEeCceEEEEEecCCeEE-EEEccCCceeEEEeecEEEecCCC
Q psy9141 85 IHGQN-G---KLREIPYDPV-HNQ---VELEQYPDCNIYFQHKLINLDVNSGNVT-FYRTEDNSETKITDNQLIIGADGA 155 (379)
Q Consensus 85 ~~~~~-g---~~~~~~~~~~-~~~---~~~~~~~gv~i~~~~~v~~i~~~~~~v~-v~~~~~G~~~~~i~adlVV~AdG~ 155 (379)
+.+.. | +..+...+.. +.+ ..+...++++|. ..+|+++..+++.+. |.+. +|+. +.||.||.|+|.
T Consensus 76 ~lN~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~-~g~~---~~a~~vVlaTGt 150 (392)
T PF01134_consen 76 MLNRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTK-DGEE---IEADAVVLATGT 150 (392)
T ss_dssp EESTTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEET-TSEE---EEECEEEE-TTT
T ss_pred cccccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeC-CCCE---EecCEEEEeccc
Confidence 22211 1 1111111111 011 455667899997 468999998888766 7777 8988 999999999999
Q ss_pred C
Q psy9141 156 Y 156 (379)
Q Consensus 156 ~ 156 (379)
+
T Consensus 151 f 151 (392)
T PF01134_consen 151 F 151 (392)
T ss_dssp G
T ss_pred c
Confidence 4
No 119
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=1e-08 Score=96.67 Aligned_cols=114 Identities=20% Similarity=0.206 Sum_probs=70.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCCc-EEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCcee
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKNQYE-VNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRA 82 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~G~~-V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~ 82 (379)
|+.+||+|||||||||++|..+++++++ ++|+|+.... |. +. .+.
T Consensus 1 ~~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~g-------g~-----~~-----------~~~----------- 46 (305)
T COG0492 1 MKIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPG-------GQ-----LT-----------KTT----------- 46 (305)
T ss_pred CceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcC-------Cc-----cc-----------cce-----------
Confidence 3569999999999999999999999999 6666654321 10 00 000
Q ss_pred eEEEecCCcEEEeeCCCCCcH-HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141 83 RMIHGQNGKLREIPYDPVHNQ-VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG 158 (379)
Q Consensus 83 ~~~~~~~g~~~~~~~~~~~~~-~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~ 158 (379)
.+.+..|.....+......+ ...+...++++.. ..|.+++..++.+.+++. +|+ ++|+.||.|+|....
T Consensus 47 -~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~-~~~----~~ak~vIiAtG~~~~ 116 (305)
T COG0492 47 -DVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGGPFKVKTD-KGT----YEAKAVIIATGAGAR 116 (305)
T ss_pred -eecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCceEEEEEC-CCe----EEEeEEEECcCCccc
Confidence 11111111000000000001 2333457888877 677778776667777776 665 889999999999874
No 120
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.87 E-value=5.5e-08 Score=99.33 Aligned_cols=155 Identities=18% Similarity=0.243 Sum_probs=84.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCH-HH-H----HHHHHC-C---------
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSV-RG-R----EALRRI-G--------- 68 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~-~~-~----~~l~~l-G--------- 68 (379)
.++||+|||+|.|||++|+.+++. .+|+|+||.......+...+.++...+.. .+ . .+++.- |
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~t~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~ 85 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGSTFYAQGGIAAVLDETDSIESHVEDTLIAGAGLCDEDAVRF 85 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCChhhccCCeeeccCCCccHHHHHHHHHHHccCCCCHHHHHH
Confidence 368999999999999999999987 89999999986543322222232211111 01 0 111100 0
Q ss_pred -------ChHHHHhCCCCceee---------EEEecCCcE-EE-eeCCCCCcH-------HHHhcCCCCeEEeCceEEEE
Q psy9141 69 -------LEDKLLAHGIPMRAR---------MIHGQNGKL-RE-IPYDPVHNQ-------VELEQYPDCNIYFQHKLINL 123 (379)
Q Consensus 69 -------l~~~l~~~~~~~~~~---------~~~~~~g~~-~~-~~~~~~~~~-------~~~~~~~gv~i~~~~~v~~i 123 (379)
..+.+.+.+.++... ......+.. .+ +......+. ..+.+.++++|+.++.++++
T Consensus 86 ~~~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~I~v~~~~~v~~L 165 (536)
T PRK09077 86 IAENAREAVQWLIDQGVPFTTDEQANGEEGYHLTREGGHSHRRILHAADATGKAVQTTLVERARNHPNITVLERHNAIDL 165 (536)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCCCccccccccCCCCccCCceEecCCCCHHHHHHHHHHHHHhCCCcEEEeeEEeeee
Confidence 112222333333210 000011111 00 011111121 23445579999999999998
Q ss_pred EecC------CeEE-EE--EccCCceeEEEeecEEEecCCCChHHHH
Q psy9141 124 DVNS------GNVT-FY--RTEDNSETKITDNQLIIGADGAYSGVRK 161 (379)
Q Consensus 124 ~~~~------~~v~-v~--~~~~G~~~~~i~adlVV~AdG~~S~vr~ 161 (379)
..++ +.+. +. ...+|+... +.|+.||.|+|.++.+..
T Consensus 166 i~~~~~~~~~g~v~Gv~~~~~~~g~~~~-i~Ak~VVlATGG~~~~~~ 211 (536)
T PRK09077 166 ITSDKLGLPGRRVVGAYVLNRNKERVET-IRAKFVVLATGGASKVYL 211 (536)
T ss_pred eecccccCCCCEEEEEEEEECCCCcEEE-EecCeEEECCCCCCCCCC
Confidence 7643 4433 22 221566556 899999999999986543
No 121
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.86 E-value=4e-08 Score=102.14 Aligned_cols=154 Identities=19% Similarity=0.323 Sum_probs=83.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC-CCCCCCCccccccc------------------------CHH
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR-NSGLSEGKSINLAL------------------------SVR 59 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~-~~~~~~g~~i~~al------------------------~~~ 59 (379)
.++||+|||||.|||++|+.+++.|.+|+|+||...+. ..+...+.++..+. .+.
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~g~s~~a~GGi~a~~~~~~~~Ds~~~~~~d~~~~g~~~~d~~ 113 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRRAHSIAAQGGINAAKNYQNDGDSVYRLFYDTVKGGDFRAREA 113 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhchHhHhhccccCCCHHHHHHHHHHhcCCCCCHH
Confidence 35799999999999999999999999999999865442 11111111221000 011
Q ss_pred HHHHHHHC--CChHHHHhCCCCceee---EE--EecCCcE-EEeeCC-CCCcH----------HHHhcCCCCeEEeCceE
Q psy9141 60 GREALRRI--GLEDKLLAHGIPMRAR---MI--HGQNGKL-REIPYD-PVHNQ----------VELEQYPDCNIYFQHKL 120 (379)
Q Consensus 60 ~~~~l~~l--Gl~~~l~~~~~~~~~~---~~--~~~~g~~-~~~~~~-~~~~~----------~~~~~~~gv~i~~~~~v 120 (379)
..+.|-.- ...+.+.+.+.++... .+ ....+.. .+..+. ...+. ....+..+++|++++.+
T Consensus 114 lv~~l~~~s~~~i~wL~~~GV~f~~~~~g~~~~~~~gghs~~R~~~~~~~tG~~i~~~l~~~L~~~~~~~gV~i~~~t~v 193 (640)
T PRK07573 114 NVYRLAEVSVNIIDQCVAQGVPFAREYGGLLANRSFGGAQVSRTFYARGQTGQQLLLGAYQALSRQIAAGTVKMYTRTEM 193 (640)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccccCCCCceeccccCCcccceeEeCCCCCchhHHHHHHHHHHHHHHhcCCEEEeceEE
Confidence 11111111 1122333334443210 00 0001111 011111 00111 11223478999999999
Q ss_pred EEEEecCCeEE-EEEc--cCCceeEEEeecEEEecCCCChHH
Q psy9141 121 INLDVNSGNVT-FYRT--EDNSETKITDNQLIIGADGAYSGV 159 (379)
Q Consensus 121 ~~i~~~~~~v~-v~~~--~~G~~~~~i~adlVV~AdG~~S~v 159 (379)
+++..+++.+. +... .+|+... +.|+.||.|+|.++.+
T Consensus 194 ~~Li~d~g~V~GV~~~~~~~g~~~~-i~AkaVVLATGG~g~~ 234 (640)
T PRK07573 194 LDLVVVDGRARGIVARNLVTGEIER-HTADAVVLATGGYGNV 234 (640)
T ss_pred EEEEEeCCEEEEEEEEECCCCcEEE-EECCEEEECCCCcccC
Confidence 99987666544 3221 1566555 8999999999998864
No 122
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.86 E-value=1.3e-08 Score=100.35 Aligned_cols=136 Identities=22% Similarity=0.325 Sum_probs=78.0
Q ss_pred EEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCC--CCCCcccccccCHHHHH--------------HHHHCCChH--
Q psy9141 10 VIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSG--LSEGKSINLALSVRGRE--------------ALRRIGLED-- 71 (379)
Q Consensus 10 vIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~--~~~g~~i~~al~~~~~~--------------~l~~lGl~~-- 71 (379)
+|||||++|+++|+.|++.|.+|+|+||.+.....- ...|+. ++.-.....+ .+..++..+
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grc-n~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~ 79 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRC-NLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLI 79 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceE-EccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHH
Confidence 699999999999999999999999999998654211 111221 0000000111 122222111
Q ss_pred -HHHhCCCCceeeEEEecCCcEEEeeCCCCCcH-----HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEe
Q psy9141 72 -KLLAHGIPMRARMIHGQNGKLREIPYDPVHNQ-----VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITD 145 (379)
Q Consensus 72 -~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~ 145 (379)
-+...+.++. . ...+. .++....... ....+..+++++++++|++++.+++.+.+++. +.+ +.
T Consensus 80 ~~~~~~Gv~~~---~-~~~g~--~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~~--~~~---i~ 148 (400)
T TIGR00275 80 DFFESLGLELK---V-EEDGR--VFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVETS--GGE---YE 148 (400)
T ss_pred HHHHHcCCeeE---E-ecCCE--eECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEEC--CcE---EE
Confidence 1111222211 0 11222 1121111011 22233468999999999999887777777663 445 89
Q ss_pred ecEEEecCCCCh
Q psy9141 146 NQLIIGADGAYS 157 (379)
Q Consensus 146 adlVV~AdG~~S 157 (379)
+|.||.|+|.+|
T Consensus 149 ad~VIlAtG~~s 160 (400)
T TIGR00275 149 ADKVILATGGLS 160 (400)
T ss_pred cCEEEECCCCcc
Confidence 999999999987
No 123
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.85 E-value=4.9e-08 Score=99.96 Aligned_cols=152 Identities=15% Similarity=0.071 Sum_probs=81.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC-CCCCCCCcccccccCH-HHH-----HHH------------
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR-NSGLSEGKSINLALSV-RGR-----EAL------------ 64 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~-~~~~~~g~~i~~al~~-~~~-----~~l------------ 64 (379)
+.++||+|||+|.|||++|+.+ +.|.+|+|+||.+... ..+...+.++...... .+. .++
T Consensus 5 ~~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d~~lv 83 (543)
T PRK06263 5 IMITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKLV 83 (543)
T ss_pred eeccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCCHHHH
Confidence 3468999999999999999999 8999999999986422 1222222222111110 000 001
Q ss_pred HHC-----CChHHHHhCCCCcee-----eEEEecCCcEE-EeeC-CCCCcH------HHHhcCCCCeEEeCceEEEEEec
Q psy9141 65 RRI-----GLEDKLLAHGIPMRA-----RMIHGQNGKLR-EIPY-DPVHNQ------VELEQYPDCNIYFQHKLINLDVN 126 (379)
Q Consensus 65 ~~l-----Gl~~~l~~~~~~~~~-----~~~~~~~g~~~-~~~~-~~~~~~------~~~~~~~gv~i~~~~~v~~i~~~ 126 (379)
+.+ ...+.+...+.++.. .......+... +..+ ....+. .......++++++++.++++..+
T Consensus 84 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~ 163 (543)
T PRK06263 84 EILVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERIKILEEVMAIKLIVD 163 (543)
T ss_pred HHHHHHHHHHHHHHHHcCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCCEEEeCeEeeeeEEe
Confidence 000 011222333333321 00000111110 1101 111111 12223379999999999998876
Q ss_pred CCe-EE---EEE-ccCCceeEEEeecEEEecCCCChH
Q psy9141 127 SGN-VT---FYR-TEDNSETKITDNQLIIGADGAYSG 158 (379)
Q Consensus 127 ~~~-v~---v~~-~~~G~~~~~i~adlVV~AdG~~S~ 158 (379)
+++ +. +.. . +|+..+ +.|+.||.|+|.++.
T Consensus 164 ~~~~v~Gv~~~~~~-~g~~~~-i~AkaVIlATGG~~~ 198 (543)
T PRK06263 164 ENREVIGAIFLDLR-NGEIFP-IYAKATILATGGAGQ 198 (543)
T ss_pred CCcEEEEEEEEECC-CCcEEE-EEcCcEEECCCCCCC
Confidence 554 43 222 4 676556 999999999999874
No 124
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.85 E-value=6.1e-08 Score=100.34 Aligned_cols=147 Identities=18% Similarity=0.217 Sum_probs=80.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCc-ccccccCHH-HH-----HHHHHC-C-------
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDIRNSGLSEGK-SINLALSVR-GR-----EALRRI-G------- 68 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~~~~~~~~g~-~i~~al~~~-~~-----~~l~~l-G------- 68 (379)
++||+|||||+|||++|+.+++. |.+|+||||.+.........|- +++..+... +. .+++.. +
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~lv 90 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDLV 90 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHHH
Confidence 58999999999999999999998 9999999998754322111110 111111110 00 011110 0
Q ss_pred ---------ChHHHHhCCCCceeeEEEecCCcEEEe--eCCCCCcH-------HHHhcCCCCeEEeCceEEEEEecCCeE
Q psy9141 69 ---------LEDKLLAHGIPMRARMIHGQNGKLREI--PYDPVHNQ-------VELEQYPDCNIYFQHKLINLDVNSGNV 130 (379)
Q Consensus 69 ---------l~~~l~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~-------~~~~~~~gv~i~~~~~v~~i~~~~~~v 130 (379)
..+.+...+.++.. ..+|..... ......+. ..+.+..+++++.++.|+++..+++.+
T Consensus 91 ~~~~~~s~~~i~~L~~~Gv~f~~----~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v 166 (608)
T PRK06854 91 YDIARHVDSVVHLFEEWGLPIWK----DENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLVDDNRI 166 (608)
T ss_pred HHHHHhHHHHHHHHHHcCCeeee----cCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeCCEE
Confidence 01122222332210 111211100 00001111 223333459999999999988666644
Q ss_pred E---E-EEccCCceeEEEeecEEEecCCCChH
Q psy9141 131 T---F-YRTEDNSETKITDNQLIIGADGAYSG 158 (379)
Q Consensus 131 ~---v-~~~~~G~~~~~i~adlVV~AdG~~S~ 158 (379)
. + ... +|+..+ +.|+.||.|+|.++.
T Consensus 167 ~Gv~~~~~~-~g~~~~-i~AkaVILATGG~~~ 196 (608)
T PRK06854 167 AGAVGFSVR-ENKFYV-FKAKAVIVATGGAAG 196 (608)
T ss_pred EEEEEEEcc-CCcEEE-EECCEEEECCCchhh
Confidence 3 2 233 565445 899999999999874
No 125
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.84 E-value=5.3e-08 Score=97.81 Aligned_cols=147 Identities=20% Similarity=0.175 Sum_probs=79.5
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCH-HH-----HHHHHHC-C-----------
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSV-RG-----REALRRI-G----------- 68 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~-~~-----~~~l~~l-G----------- 68 (379)
+||+|||||+|||++|+.+++.|.+|+|+||.+..... .....++...+.+ .+ ...++.- +
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s-~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~ 80 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNS-YLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVI 80 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCc-HHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 49999999999999999999999999999998643221 1111122111100 00 0111100 0
Q ss_pred -----ChHHHHhCCCCceeeEEEecCCcEE--EeeCCCCCcH------HHHhcCCCCeEEeCceEEEEEecCCeEEEEEc
Q psy9141 69 -----LEDKLLAHGIPMRARMIHGQNGKLR--EIPYDPVHNQ------VELEQYPDCNIYFQHKLINLDVNSGNVTFYRT 135 (379)
Q Consensus 69 -----l~~~l~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~------~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~ 135 (379)
..+.+.+.+.++.... ...+... ........+. ....+..+++++.+ .++++..+++.+.....
T Consensus 81 ~~~~~~i~~L~~~Gv~f~~~~--~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~ 157 (466)
T PRK08401 81 SKSSEAYDFLTSLGLEFEGNE--LEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFL 157 (466)
T ss_pred HHHHHHHHHHHHcCCCcccCC--CcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEE
Confidence 1112222333332110 0111111 1111111111 22233468999876 78888766666653333
Q ss_pred cCCceeEEEeecEEEecCCCChHHHH
Q psy9141 136 EDNSETKITDNQLIIGADGAYSGVRK 161 (379)
Q Consensus 136 ~~G~~~~~i~adlVV~AdG~~S~vr~ 161 (379)
+|+. +.++.||.|+|.+|....
T Consensus 158 -~g~~---i~a~~VVLATGG~~~~~~ 179 (466)
T PRK08401 158 -DGEL---LKFDATVIATGGFSGLFK 179 (466)
T ss_pred -CCEE---EEeCeEEECCCcCcCCCC
Confidence 5665 899999999999997643
No 126
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.84 E-value=5.7e-08 Score=99.61 Aligned_cols=35 Identities=29% Similarity=0.462 Sum_probs=33.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
.++||+|||+|.+||++|+.+++.|.+|+||||.+
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 46899999999999999999999999999999998
No 127
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.83 E-value=7.4e-08 Score=99.95 Aligned_cols=153 Identities=16% Similarity=0.179 Sum_probs=84.1
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccC---HHHH--------------------H
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALS---VRGR--------------------E 62 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~---~~~~--------------------~ 62 (379)
++||+|||+|.|||++|+.+++.|.+|+|+||.......+...+.++..++. ..+. +
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d~~lv~ 129 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQ 129 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCCHHHHH
Confidence 5799999999999999999999999999999987554332222222221111 1111 1
Q ss_pred HHHH-C-CChHHHHhCCCCceee---EEE--ecCCc---------EEEeeCCC-CCcH------HHHhcCCCCeEEeCce
Q psy9141 63 ALRR-I-GLEDKLLAHGIPMRAR---MIH--GQNGK---------LREIPYDP-VHNQ------VELEQYPDCNIYFQHK 119 (379)
Q Consensus 63 ~l~~-l-Gl~~~l~~~~~~~~~~---~~~--~~~g~---------~~~~~~~~-~~~~------~~~~~~~gv~i~~~~~ 119 (379)
.|-+ . ...+.+...+.++... .+. ...+. ..+..+.. ..+. .......+++|+.++.
T Consensus 130 ~l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~~~ 209 (635)
T PLN00128 130 YMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNTQFFVEYF 209 (635)
T ss_pred HHHHhHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHhCCCEEEEeeE
Confidence 1100 0 0122333334444210 000 00111 01111111 1121 1222335899999999
Q ss_pred EEEEEec-CCeEE---EEEccCCceeEEEeecEEEecCCCChHH
Q psy9141 120 LINLDVN-SGNVT---FYRTEDNSETKITDNQLIIGADGAYSGV 159 (379)
Q Consensus 120 v~~i~~~-~~~v~---v~~~~~G~~~~~i~adlVV~AdG~~S~v 159 (379)
++++..+ ++.+. +....+|+... +.|+.||.|+|.++..
T Consensus 210 ~~~Li~~~~g~v~Gv~~~~~~~g~~~~-i~AkaVILATGG~g~~ 252 (635)
T PLN00128 210 ALDLIMDSDGACQGVIALNMEDGTLHR-FRAHSTILATGGYGRA 252 (635)
T ss_pred EEEEEEcCCCEEEEEEEEEcCCCeEEE-EEcCeEEECCCCCccc
Confidence 9997765 44433 22211677666 8999999999999853
No 128
>PRK07121 hypothetical protein; Validated
Probab=98.83 E-value=6.8e-08 Score=97.80 Aligned_cols=38 Identities=26% Similarity=0.247 Sum_probs=35.1
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRN 43 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~ 43 (379)
++||||||+|.+|+++|+.+++.|.+|+|+||.+....
T Consensus 20 ~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG 57 (492)
T PRK07121 20 EADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGG 57 (492)
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCC
Confidence 58999999999999999999999999999999986543
No 129
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.83 E-value=1.4e-07 Score=97.29 Aligned_cols=38 Identities=29% Similarity=0.296 Sum_probs=34.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR 42 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~ 42 (379)
.++||+|||+|.|||++|+.+++.|.+|+||||.....
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~ 48 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTR 48 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCC
Confidence 35799999999999999999999999999999986443
No 130
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.82 E-value=5.3e-08 Score=99.14 Aligned_cols=112 Identities=21% Similarity=0.339 Sum_probs=74.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeE
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARM 84 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~ 84 (379)
.++||+||||||+|+++|..|++.|++|+|+|+. . |..+ .. ..+++. + .+.+
T Consensus 210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~-------GG~~---~~--------~~~~~~-~--~~~~----- 261 (517)
T PRK15317 210 DPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--F-------GGQV---LD--------TMGIEN-F--ISVP----- 261 (517)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--C-------CCee---ec--------cCcccc-c--CCCC-----
Confidence 3689999999999999999999999999999753 1 2111 00 001100 0 0000
Q ss_pred EEecCCcEEEeeCCCCCcH-HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141 85 IHGQNGKLREIPYDPVHNQ-VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS 157 (379)
Q Consensus 85 ~~~~~g~~~~~~~~~~~~~-~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S 157 (379)
...+. ..... ....+..+++++.+++|++++..++.+++.+. +|++ +.+|.||.|+|..+
T Consensus 262 --~~~~~-------~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~-~g~~---i~a~~vViAtG~~~ 322 (517)
T PRK15317 262 --ETEGP-------KLAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELA-NGAV---LKAKTVILATGARW 322 (517)
T ss_pred --CCCHH-------HHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEC-CCCE---EEcCEEEECCCCCc
Confidence 00000 00000 22222347999999999999988788888887 8876 99999999999976
No 131
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.81 E-value=7.2e-08 Score=98.66 Aligned_cols=151 Identities=17% Similarity=0.176 Sum_probs=82.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCH-HH-H----HHHHHC-C---------
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSV-RG-R----EALRRI-G--------- 68 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~-~~-~----~~l~~l-G--------- 68 (379)
.++||+|||+|.||+++|+.+++ |.+|+|+||.+.....+...+.++..++.+ .+ . .+++.- +
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~~~~d~~lv~~ 86 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLPS-HLRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGLCDPEAVRF 86 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhhc-CCCEEEEEccCCCCCchhhhcccceecccCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence 46899999999999999999974 999999999976543322222233211111 00 0 011100 0
Q ss_pred -------ChHHHHhCCCCceee----EEEecCCcE--EEeeCCCCCcH-------HHHhcCCCCeEEeCceEEEEEecC-
Q psy9141 69 -------LEDKLLAHGIPMRAR----MIHGQNGKL--REIPYDPVHNQ-------VELEQYPDCNIYFQHKLINLDVNS- 127 (379)
Q Consensus 69 -------l~~~l~~~~~~~~~~----~~~~~~g~~--~~~~~~~~~~~-------~~~~~~~gv~i~~~~~v~~i~~~~- 127 (379)
..+.+.+.+.++... ......+.. .........+. ..+.+.++++|++++.++++..++
T Consensus 87 ~~~~s~~~i~wL~~~Gv~f~~~~~~~~~~~~~g~s~~r~~~~~d~~G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~ 166 (553)
T PRK07395 87 LVEQAPEAIASLVEMGVAFDRHGQHLALTLEAAHSRPRVLHAADTTGRAIVTTLTEQVLQRPNIEIISQALALSLWLEPE 166 (553)
T ss_pred HHHHHHHHHHHHHhcCCeeecCCCceeeecccccccCeEEEeCCCChHHHHHHHHHHHhhcCCcEEEECcChhhheecCC
Confidence 112233333333210 000001111 11111111122 233345699999999999987653
Q ss_pred -CeEE-EE-EccCCceeEEEeecEEEecCCCChH
Q psy9141 128 -GNVT-FY-RTEDNSETKITDNQLIIGADGAYSG 158 (379)
Q Consensus 128 -~~v~-v~-~~~~G~~~~~i~adlVV~AdG~~S~ 158 (379)
+.+. +. .. +|.... +.|+-||.|+|.++.
T Consensus 167 ~g~v~Gv~~~~-~g~~~~-i~AkaVILATGG~~~ 198 (553)
T PRK07395 167 TGRCQGISLLY-QGQITW-LRAGAVILATGGGGQ 198 (553)
T ss_pred CCEEEEEEEEE-CCeEEE-EEcCEEEEcCCCCcc
Confidence 4333 22 23 676555 899999999999753
No 132
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.80 E-value=6.3e-08 Score=100.94 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=35.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR 42 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~ 42 (379)
..++||+|||||.|||++|+.+++.|.+|+|+||.+...
T Consensus 3 ~~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~ 41 (657)
T PRK08626 3 IIYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKR 41 (657)
T ss_pred ceeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 346899999999999999999999999999999987654
No 133
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.80 E-value=1.8e-08 Score=101.26 Aligned_cols=38 Identities=29% Similarity=0.327 Sum_probs=33.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~ 41 (379)
|++|||+||||||+|+.+|..+++.|.+|+|||+....
T Consensus 1 m~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~ 38 (466)
T PRK06115 1 MASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTL 38 (466)
T ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCce
Confidence 34699999999999999999999999999999975433
No 134
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.80 E-value=5.4e-08 Score=98.88 Aligned_cols=34 Identities=32% Similarity=0.372 Sum_probs=30.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED 40 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~ 40 (379)
.++||+|||+|.|||++|+.++ +.+|+|+||.+.
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 3689999999999999999997 569999999986
No 135
>PLN02815 L-aspartate oxidase
Probab=98.80 E-value=7.7e-08 Score=99.00 Aligned_cols=151 Identities=14% Similarity=0.164 Sum_probs=82.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccC---------------------HHHHHH
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALS---------------------VRGREA 63 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~---------------------~~~~~~ 63 (379)
.++||+|||+|.|||++|+.+++.| +|+|+||.+.....+...+.++...+. +...+.
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~~ 106 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDEETVRV 106 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCCCcHHHHHH
Confidence 3589999999999999999999999 999999998654432222222221111 111111
Q ss_pred HHHCC--ChHHHHhCCCCceee-----EEEecCCcEE-EeeC-CCCCcH-------HHHhcCCCCeEEeCceEEEEEecC
Q psy9141 64 LRRIG--LEDKLLAHGIPMRAR-----MIHGQNGKLR-EIPY-DPVHNQ-------VELEQYPDCNIYFQHKLINLDVNS 127 (379)
Q Consensus 64 l~~lG--l~~~l~~~~~~~~~~-----~~~~~~g~~~-~~~~-~~~~~~-------~~~~~~~gv~i~~~~~v~~i~~~~ 127 (379)
|-+-+ ..+.+...+.++... ......+... +..+ ....+. ..+.+.++++|+.++.++++..++
T Consensus 107 ~~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~ 186 (594)
T PLN02815 107 VCTEGPERVKELIAMGASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFAIDLLTSQ 186 (594)
T ss_pred HHHHHHHHHHHHHHhCCeeeecCCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceEhheeeeec
Confidence 10000 112222233333210 0001111110 1101 111121 233445689999999999988653
Q ss_pred -Ce---EE-EE---EccCCceeEEEeecEEEecCCCChH
Q psy9141 128 -GN---VT-FY---RTEDNSETKITDNQLIIGADGAYSG 158 (379)
Q Consensus 128 -~~---v~-v~---~~~~G~~~~~i~adlVV~AdG~~S~ 158 (379)
++ +. +. .. +|+... +.|+-||.|+|.++.
T Consensus 187 ~g~~~~v~Gv~~~~~~-~g~~~~-i~AkaVILATGG~g~ 223 (594)
T PLN02815 187 DGGSIVCHGADVLDTR-TGEVVR-FISKVTLLASGGAGH 223 (594)
T ss_pred CCCccEEEEEEEEEcC-CCeEEE-EEeceEEEcCCccee
Confidence 31 22 22 23 676556 899999999999875
No 136
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.80 E-value=6.2e-08 Score=95.29 Aligned_cols=67 Identities=30% Similarity=0.473 Sum_probs=48.9
Q ss_pred cEEEECCChHHHHHHHHHHhCC--CcEEEEccCCCCCCC---CCCCCccc-----ccccC-HHHHHHHHHCCChHHHH
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQ--YEVNLYEAREDIRNS---GLSEGKSI-----NLALS-VRGREALRRIGLEDKLL 74 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G--~~V~viE~~~~~~~~---~~~~g~~i-----~~al~-~~~~~~l~~lGl~~~l~ 74 (379)
.|+|||||++||++|+.|++++ .+|+|+|+++..... -..+|-.+ +.... +...+.++++|+.+.+.
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eLGled~l~ 79 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKELGLEDKLL 79 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecchHHHHHHHHHhCcHHhhc
Confidence 5999999999999999999999 999999998755321 01112111 01122 66788899999988776
No 137
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.79 E-value=1.4e-07 Score=94.14 Aligned_cols=48 Identities=8% Similarity=0.121 Sum_probs=39.1
Q ss_pred cCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141 108 QYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVR 160 (379)
Q Consensus 108 ~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr 160 (379)
+..|+++++++++++++.+++.+++... +| + +.+|.||.|.|+.+.+.
T Consensus 210 ~~~gV~v~~~~~v~~i~~~~~~v~v~~~-~g-~---i~~D~vl~a~G~~pn~~ 257 (441)
T PRK08010 210 RDQGVDIILNAHVERISHHENQVQVHSE-HA-Q---LAVDALLIASGRQPATA 257 (441)
T ss_pred HhCCCEEEeCCEEEEEEEcCCEEEEEEc-CC-e---EEeCEEEEeecCCcCCC
Confidence 3468999999999999887777777665 55 3 88999999999988653
No 138
>PRK06370 mercuric reductase; Validated
Probab=98.79 E-value=1e-07 Score=95.71 Aligned_cols=36 Identities=22% Similarity=0.261 Sum_probs=34.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
|.+|||+||||||+|+++|+.|++.|++|+|+|+..
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~ 38 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL 38 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc
Confidence 678999999999999999999999999999999875
No 139
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.79 E-value=8.7e-08 Score=98.84 Aligned_cols=37 Identities=24% Similarity=0.214 Sum_probs=33.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR 42 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~ 42 (379)
.++||+|||||+|||++|+.+++. .+|+|+||.+...
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~ 40 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTR 40 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCC
Confidence 468999999999999999999987 8999999987544
No 140
>KOG1399|consensus
Probab=98.78 E-value=2.7e-08 Score=98.19 Aligned_cols=137 Identities=16% Similarity=0.182 Sum_probs=80.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCC--ChHHHHhCCCCce
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIG--LEDKLLAHGIPMR 81 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lG--l~~~l~~~~~~~~ 81 (379)
|...+|+||||||+||++|..|.+.|++|+++||.+.++....+....- .-+. .+.+++- +..++. ...
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~---~~~s--s~Y~~l~tn~pKe~~----~~~ 74 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVE---VVHS--SVYKSLRTNLPKEMM----GYS 74 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCccc---cccc--chhhhhhccCChhhh----cCC
Confidence 4457999999999999999999999999999999998764322221100 0000 1111111 111111 001
Q ss_pred eeEEEecCCcEEEeeCCCCCc-H-----HHHhcCCC--CeEEeCceEEEEEecC-CeEEEEEccCCc--eeEEEeecEEE
Q psy9141 82 ARMIHGQNGKLREIPYDPVHN-Q-----VELEQYPD--CNIYFQHKLINLDVNS-GNVTFYRTEDNS--ETKITDNQLII 150 (379)
Q Consensus 82 ~~~~~~~~g~~~~~~~~~~~~-~-----~~~~~~~g--v~i~~~~~v~~i~~~~-~~v~v~~~~~G~--~~~~i~adlVV 150 (379)
+.-+... .+--.... + ...++..+ ..|.++++|..++... +.|.|... ++. ..+ ..+|.||
T Consensus 75 dfpf~~~------~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~-~~~~~~~~-~ifd~Vv 146 (448)
T KOG1399|consen 75 DFPFPER------DPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTK-DNGTQIEE-EIFDAVV 146 (448)
T ss_pred CCCCccc------CcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEe-cCCcceeE-EEeeEEE
Confidence 0100000 00000101 1 22233333 4689999999999888 78998876 332 234 7899999
Q ss_pred ecCCCCh
Q psy9141 151 GADGAYS 157 (379)
Q Consensus 151 ~AdG~~S 157 (379)
.|+|.+.
T Consensus 147 VctGh~~ 153 (448)
T KOG1399|consen 147 VCTGHYV 153 (448)
T ss_pred EcccCcC
Confidence 9999993
No 141
>PRK14694 putative mercuric reductase; Provisional
Probab=98.77 E-value=1.7e-08 Score=101.42 Aligned_cols=39 Identities=18% Similarity=0.231 Sum_probs=35.8
Q ss_pred CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
|++..+|||+||||||+|+++|..|++.|++|+|||+..
T Consensus 1 ~~~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~ 39 (468)
T PRK14694 1 MMSDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT 39 (468)
T ss_pred CCCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc
Confidence 665678999999999999999999999999999999864
No 142
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.77 E-value=3.7e-08 Score=96.23 Aligned_cols=38 Identities=39% Similarity=0.526 Sum_probs=34.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR 42 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~ 42 (379)
.++||+|||||++|+++|+.|++.|.+|+|+|+.....
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~ 40 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG 40 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCC
Confidence 46899999999999999999999999999999988654
No 143
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.77 E-value=1.7e-07 Score=96.10 Aligned_cols=39 Identities=23% Similarity=0.291 Sum_probs=35.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRN 43 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~ 43 (379)
.++||+|||+|++|+++|+.+++.|.+|+||||.+....
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG 44 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGG 44 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCc
Confidence 478999999999999999999999999999999876543
No 144
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.76 E-value=9e-08 Score=97.37 Aligned_cols=113 Identities=19% Similarity=0.331 Sum_probs=73.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeE
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARM 84 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~ 84 (379)
..+||+||||||+|+++|..|++.|++|+|+|.. .. |. + .. ..++ +.+. +.+
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~--~G------G~-~---~~--------~~~~-~~~~--~~~----- 262 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--IG------GQ-V---KD--------TVGI-ENLI--SVP----- 262 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CC------Cc-c---cc--------CcCc-cccc--ccC-----
Confidence 4689999999999999999999999999999743 11 11 0 00 0000 0000 000
Q ss_pred EEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141 85 IHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS 157 (379)
Q Consensus 85 ~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S 157 (379)
...+. .+... -...+.. .+++++.+++|++++.+++.+.+.+. +|+. +.+|.||.|+|...
T Consensus 263 --~~~~~----~l~~~-l~~~l~~-~gv~i~~~~~V~~I~~~~~~~~v~~~-~g~~---i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 263 --YTTGS----QLAAN-LEEHIKQ-YPIDLMENQRAKKIETEDGLIVVTLE-SGEV---LKAKSVIVATGARW 323 (515)
T ss_pred --CCCHH----HHHHH-HHHHHHH-hCCeEEcCCEEEEEEecCCeEEEEEC-CCCE---EEeCEEEECCCCCc
Confidence 00000 00000 0022333 58999999999999888778888887 8876 99999999999874
No 145
>KOG2820|consensus
Probab=98.76 E-value=8.8e-08 Score=88.81 Aligned_cols=41 Identities=29% Similarity=0.384 Sum_probs=37.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSG 45 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~ 45 (379)
+..||+|||||+-|+++|+.|+++|.++.++|+.+.+...+
T Consensus 6 ~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~G 46 (399)
T KOG2820|consen 6 KSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRG 46 (399)
T ss_pred cceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccC
Confidence 45899999999999999999999999999999999876443
No 146
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.75 E-value=1.9e-07 Score=93.08 Aligned_cols=37 Identities=22% Similarity=0.260 Sum_probs=34.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED 40 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~ 40 (379)
|++|||+||||||+|+++|..|++.|++|+|+|+.+.
T Consensus 1 ~~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~ 37 (438)
T PRK07251 1 MLTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKA 37 (438)
T ss_pred CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCc
Confidence 4579999999999999999999999999999999863
No 147
>PRK06116 glutathione reductase; Validated
Probab=98.75 E-value=1.3e-07 Score=94.72 Aligned_cols=49 Identities=12% Similarity=0.049 Sum_probs=41.0
Q ss_pred cCCCCeEEeCceEEEEEecCCe-EEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141 108 QYPDCNIYFQHKLINLDVNSGN-VTFYRTEDNSETKITDNQLIIGADGAYSGVR 160 (379)
Q Consensus 108 ~~~gv~i~~~~~v~~i~~~~~~-v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr 160 (379)
+..|++++++++|++++.++++ +.+.+. +|++ +++|.||.|.|....+.
T Consensus 219 ~~~GV~i~~~~~V~~i~~~~~g~~~v~~~-~g~~---i~~D~Vv~a~G~~p~~~ 268 (450)
T PRK06116 219 EKKGIRLHTNAVPKAVEKNADGSLTLTLE-DGET---LTVDCLIWAIGREPNTD 268 (450)
T ss_pred HHCCcEEECCCEEEEEEEcCCceEEEEEc-CCcE---EEeCEEEEeeCCCcCCC
Confidence 3468999999999999876554 777777 8876 99999999999987655
No 148
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.75 E-value=1.6e-07 Score=94.47 Aligned_cols=51 Identities=20% Similarity=0.199 Sum_probs=39.5
Q ss_pred CCCCeEEeCceEEEEEecCCeEEEEEc-cCCceeEEEeecEEEecCCCChHHH
Q psy9141 109 YPDCNIYFQHKLINLDVNSGNVTFYRT-EDNSETKITDNQLIIGADGAYSGVR 160 (379)
Q Consensus 109 ~~gv~i~~~~~v~~i~~~~~~v~v~~~-~~G~~~~~i~adlVV~AdG~~S~vr 160 (379)
..|++++++++|++++.+++.+.+.+. .+|+..+ +++|.||.|.|+...+.
T Consensus 225 ~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~-i~~D~vi~a~G~~pn~~ 276 (466)
T PRK07818 225 KLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQE-LEADKVLQAIGFAPRVE 276 (466)
T ss_pred HCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEE-EEeCEEEECcCcccCCC
Confidence 469999999999999877666655442 1565345 99999999999987764
No 149
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.75 E-value=2.1e-07 Score=92.99 Aligned_cols=48 Identities=13% Similarity=0.109 Sum_probs=40.9
Q ss_pred CCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141 109 YPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVR 160 (379)
Q Consensus 109 ~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr 160 (379)
..|++++.+++|++++.+++++.+.+. +|++ +++|.||.|.|+...+.
T Consensus 219 ~~gV~i~~~~~v~~i~~~~~~~~v~~~-~g~~---i~~D~viva~G~~pn~~ 266 (446)
T TIGR01424 219 GRGIRIHPQTSLTSITKTDDGLKVTLS-HGEE---IVADVVLFATGRSPNTK 266 (446)
T ss_pred HCCCEEEeCCEEEEEEEcCCeEEEEEc-CCcE---eecCEEEEeeCCCcCCC
Confidence 468999999999999877777777777 7876 99999999999987654
No 150
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.74 E-value=8.6e-08 Score=97.06 Aligned_cols=53 Identities=11% Similarity=0.179 Sum_probs=43.5
Q ss_pred hcCCCCeEEeCceEEEEEecCCeE-EEEEccCCceeEEEeecEEEecCCCChHHHHHh
Q psy9141 107 EQYPDCNIYFQHKLINLDVNSGNV-TFYRTEDNSETKITDNQLIIGADGAYSGVRKCL 163 (379)
Q Consensus 107 ~~~~gv~i~~~~~v~~i~~~~~~v-~v~~~~~G~~~~~i~adlVV~AdG~~S~vr~~l 163 (379)
.+..|++|+++++|++|..+++++ .+++. +|++ ++||.||.|.|.+..+++.+
T Consensus 239 ~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~-~g~~---~~ad~vV~a~~~~~~~~~Ll 292 (493)
T TIGR02730 239 LEKHGGQIRYRARVTKIILENGKAVGVKLA-DGEK---IYAKRIVSNATRWDTFGKLL 292 (493)
T ss_pred HHHCCCEEEeCCeeeEEEecCCcEEEEEeC-CCCE---EEcCEEEECCChHHHHHHhC
Confidence 445689999999999998776644 46777 8877 99999999999998887765
No 151
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.73 E-value=4.2e-08 Score=98.70 Aligned_cols=132 Identities=16% Similarity=0.121 Sum_probs=75.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHH---hCCCCce
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLL---AHGIPMR 81 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~---~~~~~~~ 81 (379)
.+|||+||||||+|+.+|..|++.|.+|+|+|+.+..... +-.++ +++ +..++........+. ..+....
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~--c~n~g---ciP--~K~l~~~a~~~~~~~~~~~~g~~~~ 75 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGV--CLNVG---CIP--SKALLHVAKVIEEAKALAEHGIVFG 75 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccccc--ccCCC---ccc--HHHHHHHHHHHHHHhhhhhcCcccC
Confidence 4699999999999999999999999999999987533321 11111 122 222232222222211 1111110
Q ss_pred eeEEEecCCcEEEeeCCCCCc------------HHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEE
Q psy9141 82 ARMIHGQNGKLREIPYDPVHN------------QVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLI 149 (379)
Q Consensus 82 ~~~~~~~~g~~~~~~~~~~~~------------~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlV 149 (379)
. ..+++..... .....+..+++++.++. .. .++..+.+... +|+..+ +++|.|
T Consensus 76 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a-~~--~~~~~v~v~~~-~g~~~~-~~~d~l 140 (471)
T PRK06467 76 E----------PKIDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLG-KF--TGGNTLEVTGE-DGKTTV-IEFDNA 140 (471)
T ss_pred C----------CCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EE--ccCCEEEEecC-CCceEE-EEcCEE
Confidence 0 0011111000 02233456899987742 22 34566777766 774344 999999
Q ss_pred EecCCCChH
Q psy9141 150 IGADGAYSG 158 (379)
Q Consensus 150 V~AdG~~S~ 158 (379)
|.|+|....
T Consensus 141 ViATGs~p~ 149 (471)
T PRK06467 141 IIAAGSRPI 149 (471)
T ss_pred EEeCCCCCC
Confidence 999998653
No 152
>PRK08275 putative oxidoreductase; Provisional
Probab=98.73 E-value=1.3e-07 Score=97.13 Aligned_cols=37 Identities=22% Similarity=0.390 Sum_probs=33.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDI 41 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~ 41 (379)
.++||+|||||.||+++|+.+++. |.+|+|+||.+..
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~ 46 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVK 46 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence 458999999999999999999987 7899999999863
No 153
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.71 E-value=2e-07 Score=94.65 Aligned_cols=141 Identities=16% Similarity=0.210 Sum_probs=78.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCH-HHHHHHHHCC-ChHHHHhC-CCCceee
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSV-RGREALRRIG-LEDKLLAH-GIPMRAR 83 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~-~~~~~l~~lG-l~~~l~~~-~~~~~~~ 83 (379)
|||+|||||++|+.+|..+++.|.+|+|+|+.........+ ...+. .+.. .-.+-++.+| ....+... ...+
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c-~ps~g-G~a~g~l~rEidaLGG~~~~~~d~~~i~~--- 75 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSC-NPAIG-GPAKGILVKEIDALGGLMGKAADKAGLQF--- 75 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCc-ccccc-ccccchhhhhhhcccchHHHHHHhhceeh---
Confidence 69999999999999999999999999999987532211011 11110 0111 1223344453 22222211 1111
Q ss_pred EEEecC-CcEEEeeCCCCCcH-------HHHhcCCCCeEEeCceEEEEEec-CCe-EEEEEccCCceeEEEeecEEEecC
Q psy9141 84 MIHGQN-GKLREIPYDPVHNQ-------VELEQYPDCNIYFQHKLINLDVN-SGN-VTFYRTEDNSETKITDNQLIIGAD 153 (379)
Q Consensus 84 ~~~~~~-g~~~~~~~~~~~~~-------~~~~~~~gv~i~~~~~v~~i~~~-~~~-v~v~~~~~G~~~~~i~adlVV~Ad 153 (379)
...+.. +.....+....... ..+.+.++++++.+ .|+++..+ ++. +.|.+. +|.. +.|+.||.|+
T Consensus 76 r~ln~skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~-~G~~---I~Ad~VILAT 150 (617)
T TIGR00136 76 RVLNSSKGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQ-DGLK---FRAKAVIITT 150 (617)
T ss_pred eecccCCCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEEC-CCCE---EECCEEEEcc
Confidence 111111 11011110011010 34556678888765 67777654 444 446777 8876 9999999999
Q ss_pred CCCh
Q psy9141 154 GAYS 157 (379)
Q Consensus 154 G~~S 157 (379)
|.++
T Consensus 151 GtfL 154 (617)
T TIGR00136 151 GTFL 154 (617)
T ss_pred Cccc
Confidence 9995
No 154
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.70 E-value=3.4e-07 Score=91.86 Aligned_cols=50 Identities=12% Similarity=0.169 Sum_probs=41.4
Q ss_pred CCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141 109 YPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVR 160 (379)
Q Consensus 109 ~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr 160 (379)
..+++++++++|++++.+++++.+.+. +|+..+ +.+|.||.|.|..+.+.
T Consensus 223 ~~gi~i~~~~~v~~i~~~~~~v~v~~~-~g~~~~-i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 223 KKGVKILTNTKVTAVEKNDDQVVYENK-GGETET-LTGEKVLVAVGRKPNTE 272 (461)
T ss_pred HcCCEEEeCCEEEEEEEeCCEEEEEEe-CCcEEE-EEeCEEEEecCCcccCC
Confidence 358999999999999888788888776 774334 99999999999998765
No 155
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.70 E-value=3.6e-07 Score=92.94 Aligned_cols=37 Identities=27% Similarity=0.388 Sum_probs=34.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR 42 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~ 42 (379)
.++||||||+| +|+++|+.+++.|.+|+||||.+...
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~G 42 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFG 42 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 36899999999 99999999999999999999997644
No 156
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.70 E-value=3e-08 Score=99.80 Aligned_cols=136 Identities=14% Similarity=0.148 Sum_probs=74.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeE
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARM 84 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~ 84 (379)
..|||+||||||+|+.+|..|++.|++|+|+|+.. .... +..++ +++. ..+++.......+... ...++.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~-~GG~--c~~~g---ciPs--k~l~~~a~~~~~~~~~--~~~g~~ 72 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGK-LGGT--CLHKG---CIPS--KALLHSAEVFQTAKKA--SPFGIS 72 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCcc--eEcCC---cCch--HHHHHHHHHHHHHHHH--HhcCcc
Confidence 47999999999999999999999999999999863 2211 11111 2222 2222221111111110 000000
Q ss_pred EEecCCcEEEeeCCCCC------------cHHHHhcCCCCeEEeCceEEEEEec-----CCeEEEEEccCCceeEEEeec
Q psy9141 85 IHGQNGKLREIPYDPVH------------NQVELEQYPDCNIYFQHKLINLDVN-----SGNVTFYRTEDNSETKITDNQ 147 (379)
Q Consensus 85 ~~~~~g~~~~~~~~~~~------------~~~~~~~~~gv~i~~~~~v~~i~~~-----~~~v~v~~~~~G~~~~~i~ad 147 (379)
... ...+|.... ......+..+++++.+. ++.+..+ ++.+++.+. +|+..+ +.+|
T Consensus 73 ~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~-a~~i~~~~~~~~~~~~~v~~~-~g~~~~-~~~d 144 (472)
T PRK05976 73 VSG-----PALDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGI-GRILGPSIFSPMPGTVSVETE-TGENEM-IIPE 144 (472)
T ss_pred CCC-----CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEeCCCCCcCCceEEEEEeC-CCceEE-EEcC
Confidence 000 001110000 00233345689998874 4445433 236778777 774334 9999
Q ss_pred EEEecCCCChH
Q psy9141 148 LIIGADGAYSG 158 (379)
Q Consensus 148 lVV~AdG~~S~ 158 (379)
.||.|+|....
T Consensus 145 ~lViATGs~p~ 155 (472)
T PRK05976 145 NLLIATGSRPV 155 (472)
T ss_pred EEEEeCCCCCC
Confidence 99999998763
No 157
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.69 E-value=3e-07 Score=91.77 Aligned_cols=42 Identities=12% Similarity=0.044 Sum_probs=36.6
Q ss_pred eEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141 113 NIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG 158 (379)
Q Consensus 113 ~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~ 158 (379)
+|+++++|++|+.+++++++.+. +|++ ++||.||.|.-....
T Consensus 235 ~i~~~~~V~~i~~~~~~~~v~~~-~g~~---~~~d~vI~a~p~~~~ 276 (451)
T PRK11883 235 TIHKGTPVTKIDKSGDGYEIVLS-NGGE---IEADAVIVAVPHPVL 276 (451)
T ss_pred eEEeCCEEEEEEEcCCeEEEEEC-CCCE---EEcCEEEECCCHHHH
Confidence 79999999999998888988888 8887 999999999776543
No 158
>PRK10262 thioredoxin reductase; Provisional
Probab=98.68 E-value=1.2e-07 Score=90.52 Aligned_cols=38 Identities=21% Similarity=0.304 Sum_probs=34.9
Q ss_pred CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccC
Q psy9141 1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAR 38 (379)
Q Consensus 1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~ 38 (379)
|.+.+.+||+||||||+|+++|..|++.|++++++|+.
T Consensus 1 ~~~~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~ 38 (321)
T PRK10262 1 MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM 38 (321)
T ss_pred CCCCCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee
Confidence 55667899999999999999999999999999999965
No 159
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.68 E-value=5.9e-07 Score=90.22 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=40.7
Q ss_pred cCCCCeEEeCceEEEEEecCCeEEEEEccCC-ceeEEEeecEEEecCCCChHHH
Q psy9141 108 QYPDCNIYFQHKLINLDVNSGNVTFYRTEDN-SETKITDNQLIIGADGAYSGVR 160 (379)
Q Consensus 108 ~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G-~~~~~i~adlVV~AdG~~S~vr 160 (379)
+..+++++.+++|++++.+++++.+.+. +| +..+ +.+|.||.|.|....+.
T Consensus 224 ~~~gV~i~~~~~V~~i~~~~~~v~v~~~-~gg~~~~-i~~D~vi~a~G~~p~~~ 275 (462)
T PRK06416 224 KKRGIKIKTGAKAKKVEQTDDGVTVTLE-DGGKEET-LEADYVLVAVGRRPNTE 275 (462)
T ss_pred HHcCCEEEeCCEEEEEEEeCCEEEEEEE-eCCeeEE-EEeCEEEEeeCCccCCC
Confidence 3468999999999999987778877776 54 3234 99999999999987654
No 160
>KOG2853|consensus
Probab=98.68 E-value=3.3e-07 Score=85.08 Aligned_cols=37 Identities=30% Similarity=0.405 Sum_probs=33.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhC----CCcEEEEccCCCCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKN----QYEVNLYEAREDIR 42 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~----G~~V~viE~~~~~~ 42 (379)
+.||+|||||-.|++.|++|++. |++|+|+||+....
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtyt 126 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYT 126 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCccc
Confidence 56999999999999999999764 79999999998654
No 161
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.68 E-value=1.8e-07 Score=90.46 Aligned_cols=39 Identities=36% Similarity=0.595 Sum_probs=36.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR 42 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~ 42 (379)
++..||+|||||.+||++|+.|.+.|++|+|+|.++...
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~G 43 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVG 43 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcC
Confidence 567899999999999999999999999999999988654
No 162
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.67 E-value=4e-08 Score=99.73 Aligned_cols=136 Identities=18% Similarity=0.223 Sum_probs=73.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH 86 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 86 (379)
..|+|||||++||++|..|.+.|++++++||.+..+....+....- + +. -.+++.+... .+-.-+.+.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~-----~-g~-----~~~y~sl~~n-~sk~~~~fs 69 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPE-----D-GR-----SSVYDSLHTN-TSKEMMAFS 69 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCC-----C-SE-----GGGSTT-B-S-S-GGGSCCT
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCC-----C-Cc-----cccccceEEe-eCchHhcCC
Confidence 3799999999999999999999999999999998754321111000 0 00 0012211111 000000000
Q ss_pred ecCCcEEEeeCCCCCcH-------HHHhcCCC--CeEEeCceEEEEEecC-----CeEEEEEccCCceeEEEeecEEEec
Q psy9141 87 GQNGKLREIPYDPVHNQ-------VELEQYPD--CNIYFQHKLINLDVNS-----GNVTFYRTEDNSETKITDNQLIIGA 152 (379)
Q Consensus 87 ~~~g~~~~~~~~~~~~~-------~~~~~~~g--v~i~~~~~v~~i~~~~-----~~v~v~~~~~G~~~~~i~adlVV~A 152 (379)
+.. ..-.+...... +..++.-+ -.|+++++|++++..+ +.|+|++..+|+..+ -..|.||.|
T Consensus 70 dfp---~p~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~-~~fD~Vvva 145 (531)
T PF00743_consen 70 DFP---FPEDYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEET-EEFDAVVVA 145 (531)
T ss_dssp TS----HCCCCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEE-EEECEEEEE
T ss_pred CcC---CCCCCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEE-EEeCeEEEc
Confidence 000 00001111111 22222223 3699999999998764 368888764565545 678999999
Q ss_pred CCCChH
Q psy9141 153 DGAYSG 158 (379)
Q Consensus 153 dG~~S~ 158 (379)
+|.++.
T Consensus 146 tG~~~~ 151 (531)
T PF00743_consen 146 TGHFSK 151 (531)
T ss_dssp E-SSSC
T ss_pred CCCcCC
Confidence 999983
No 163
>PLN02507 glutathione reductase
Probab=98.67 E-value=4.8e-07 Score=91.65 Aligned_cols=49 Identities=14% Similarity=0.187 Sum_probs=41.8
Q ss_pred cCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141 108 QYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVR 160 (379)
Q Consensus 108 ~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr 160 (379)
+..|++++.+++|++++.+++++.+.+. +|++ +++|.||.|.|+...+.
T Consensus 255 ~~~GI~i~~~~~V~~i~~~~~~~~v~~~-~g~~---i~~D~vl~a~G~~pn~~ 303 (499)
T PLN02507 255 EGRGINLHPRTNLTQLTKTEGGIKVITD-HGEE---FVADVVLFATGRAPNTK 303 (499)
T ss_pred HhCCCEEEeCCEEEEEEEeCCeEEEEEC-CCcE---EEcCEEEEeecCCCCCC
Confidence 3468999999999999877777888877 7876 99999999999988664
No 164
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.66 E-value=2.6e-07 Score=94.86 Aligned_cols=112 Identities=15% Similarity=0.243 Sum_probs=69.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI 85 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~ 85 (379)
.|||+||||||||+++|..|++.|++|+|||+.... |. + .... .+. ..+ +..
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~G-------G~-~--~~~~-------------~i~--~~p--g~~- 55 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFG-------GQ-I--TITS-------------EVV--NYP--GIL- 55 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC-------ce-E--Eecc-------------ccc--cCC--CCc-
Confidence 489999999999999999999999999999986311 21 1 0000 000 000 000
Q ss_pred EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141 86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG 158 (379)
Q Consensus 86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~ 158 (379)
...+. .+.. ......+..+++++ .++|++++.+++.+.+... +|+ +.++.||.|+|.++.
T Consensus 56 -~~~~~----~l~~--~l~~~~~~~gv~~~-~~~V~~i~~~~~~~~V~~~-~g~----~~a~~lVlATGa~p~ 115 (555)
T TIGR03143 56 -NTTGP----ELMQ--EMRQQAQDFGVKFL-QAEVLDVDFDGDIKTIKTA-RGD----YKTLAVLIATGASPR 115 (555)
T ss_pred -CCCHH----HHHH--HHHHHHHHcCCEEe-ccEEEEEEecCCEEEEEec-CCE----EEEeEEEECCCCccC
Confidence 00000 0000 00122233478875 6788888877666677766 663 889999999999764
No 165
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.66 E-value=3.3e-07 Score=91.90 Aligned_cols=67 Identities=31% Similarity=0.491 Sum_probs=47.4
Q ss_pred CcEEEECCChHHHHHHHHHHhC----CCcEEEEccCCCCCCC---CCCCCcccc------cccCHHHHHHHHHCCChHHH
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKN----QYEVNLYEAREDIRNS---GLSEGKSIN------LALSVRGREALRRIGLEDKL 73 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~----G~~V~viE~~~~~~~~---~~~~g~~i~------~al~~~~~~~l~~lGl~~~l 73 (379)
.||+|||||++||++|+.|+++ |++|+|+|+++..... ...+|..+. ..-.++..++++++|+...+
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~~~~~~~l~~~lgl~~~~ 82 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERKKSAPDLVKDLGLEHVL 82 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCccccccCChHHHHHHHHcCCCccc
Confidence 4899999999999999999999 9999999999865311 001111110 01234578899999975543
No 166
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.66 E-value=2.8e-07 Score=91.51 Aligned_cols=39 Identities=15% Similarity=0.222 Sum_probs=36.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR 42 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~ 42 (379)
+.+|||+|||+|.+||.+|..|++.|.+|+++|+++..+
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yG 40 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYG 40 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcC
Confidence 457999999999999999999999999999999998665
No 167
>PRK09897 hypothetical protein; Provisional
Probab=98.66 E-value=1.9e-07 Score=94.66 Aligned_cols=42 Identities=17% Similarity=0.274 Sum_probs=35.5
Q ss_pred CeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCC
Q psy9141 112 CNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAY 156 (379)
Q Consensus 112 v~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~ 156 (379)
+.++.+++|++++.+++++.+++..+|.. +.+|.||.|+|..
T Consensus 124 V~v~~~~~V~~I~~~~~g~~V~t~~gg~~---i~aD~VVLAtGh~ 165 (534)
T PRK09897 124 VAVYESCQVTDLQITNAGVMLATNQDLPS---ETFDLAVIATGHV 165 (534)
T ss_pred EEEEECCEEEEEEEeCCEEEEEECCCCeE---EEcCEEEECCCCC
Confidence 78888999999999989999887613455 8999999999974
No 168
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.66 E-value=3.1e-07 Score=95.01 Aligned_cols=31 Identities=35% Similarity=0.682 Sum_probs=30.1
Q ss_pred EEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 9 VVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 9 VvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
|+|||+|+|||++|+.+++.|.+|+|+||.+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence 7999999999999999999999999999987
No 169
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.66 E-value=2.9e-07 Score=93.45 Aligned_cols=52 Identities=12% Similarity=0.227 Sum_probs=42.4
Q ss_pred cCCCCeEEeCceEEEEEecCCe-EEEEEccCCceeEEEeecEEEecCCCChHHHHHh
Q psy9141 108 QYPDCNIYFQHKLINLDVNSGN-VTFYRTEDNSETKITDNQLIIGADGAYSGVRKCL 163 (379)
Q Consensus 108 ~~~gv~i~~~~~v~~i~~~~~~-v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr~~l 163 (379)
+..|++|+++++|++|..++++ +.|++. +|++ ++||.||.|.+........+
T Consensus 230 ~~~G~~i~~~~~V~~i~~~~~~~~~V~~~-~g~~---~~ad~VI~a~~~~~~~~~l~ 282 (502)
T TIGR02734 230 EDLGGELRLNAEVIRIETEGGRATAVHLA-DGER---LDADAVVSNADLHHTYRRLL 282 (502)
T ss_pred HHCCCEEEECCeEEEEEeeCCEEEEEEEC-CCCE---EECCEEEECCcHHHHHHHhc
Confidence 3468999999999999887765 457777 8877 99999999998877776654
No 170
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.65 E-value=2.1e-07 Score=90.70 Aligned_cols=150 Identities=18% Similarity=0.252 Sum_probs=88.8
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCH---------------------HHHHHHHH
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSV---------------------RGREALRR 66 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~---------------------~~~~~l~~ 66 (379)
||+|||+|+|||++|+.|++. ++|+|+-|.+.....+.+...+|..++.+ .+.+.+-.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 999999999999999999999 99999999987654333333344333332 11111111
Q ss_pred CC--ChHHHHhCCCCcee-----eEEEecCCcE--EEeeCCCCCcH-------HHHhcCCCCeEEeCceEEEEEecCC-e
Q psy9141 67 IG--LEDKLLAHGIPMRA-----RMIHGQNGKL--REIPYDPVHNQ-------VELEQYPDCNIYFQHKLINLDVNSG-N 129 (379)
Q Consensus 67 lG--l~~~l~~~~~~~~~-----~~~~~~~g~~--~~~~~~~~~~~-------~~~~~~~gv~i~~~~~v~~i~~~~~-~ 129 (379)
-+ ..+.+...+.++.. +.+....+.. ..+......++ ..+.+.++++++.++.+.++..+++ .
T Consensus 88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~ 167 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIG 167 (518)
T ss_pred hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCce
Confidence 11 12233334444431 1111111111 11111112232 4556668999999999999888877 3
Q ss_pred E---EEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141 130 V---TFYRTEDNSETKITDNQLIIGADGAYSGVR 160 (379)
Q Consensus 130 v---~v~~~~~G~~~~~i~adlVV~AdG~~S~vr 160 (379)
+ .+... +++..+ +.|+.||.|+|..+.+=
T Consensus 168 ~~Gv~~~~~-~~~~~~-~~a~~vVLATGG~g~ly 199 (518)
T COG0029 168 VAGVLVLNR-NGELGT-FRAKAVVLATGGLGGLY 199 (518)
T ss_pred EeEEEEecC-CCeEEE-EecCeEEEecCCCcccc
Confidence 3 33322 333445 89999999999988543
No 171
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.64 E-value=4.5e-07 Score=90.74 Aligned_cols=50 Identities=14% Similarity=0.107 Sum_probs=39.5
Q ss_pred cCCCCeEEeCceEEEEEecCCe-EEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141 108 QYPDCNIYFQHKLINLDVNSGN-VTFYRTEDNSETKITDNQLIIGADGAYSGVR 160 (379)
Q Consensus 108 ~~~gv~i~~~~~v~~i~~~~~~-v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr 160 (379)
+..|++++.++.+++++.++++ +.+.+. +|+ .+ +++|.||.|.|+...+.
T Consensus 218 ~~~gI~i~~~~~v~~i~~~~~~~~~v~~~-~g~-~~-i~~D~vi~a~G~~pn~~ 268 (450)
T TIGR01421 218 EKEGINVHKLSKPVKVEKTVEGKLVIHFE-DGK-SI-DDVDELIWAIGRKPNTK 268 (450)
T ss_pred HHcCCEEEcCCEEEEEEEeCCceEEEEEC-CCc-EE-EEcCEEEEeeCCCcCcc
Confidence 3468999999999999876544 667776 773 23 89999999999998764
No 172
>PRK07233 hypothetical protein; Provisional
Probab=98.63 E-value=5.1e-07 Score=89.58 Aligned_cols=63 Identities=32% Similarity=0.451 Sum_probs=45.2
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCC---CCCCccc----c--cccCHHHHHHHHHCCCh
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSG---LSEGKSI----N--LALSVRGREALRRIGLE 70 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~---~~~g~~i----~--~al~~~~~~~l~~lGl~ 70 (379)
+|+|||||++||++|+.|++.|++|+|+|+++.+.... ...|..+ + ..-.+...++++++|+.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~~~~~~~~l~~~lg~~ 72 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFKSDEALLELLDELGLE 72 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCcchhhhhhhhccccHHHHHHHHHcCCC
Confidence 59999999999999999999999999999998765320 0111110 0 01235667888888863
No 173
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.63 E-value=5e-07 Score=93.17 Aligned_cols=42 Identities=21% Similarity=0.209 Sum_probs=37.1
Q ss_pred CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141 1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR 42 (379)
Q Consensus 1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~ 42 (379)
|.+..++||+|||+|++|+++|+.++++|.+|+|+||.+...
T Consensus 4 ~~~~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~g 45 (574)
T PRK12842 4 MTNELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFG 45 (574)
T ss_pred cCcCCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCC
Confidence 444457899999999999999999999999999999998654
No 174
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.61 E-value=6.1e-07 Score=90.10 Aligned_cols=47 Identities=4% Similarity=-0.064 Sum_probs=37.5
Q ss_pred CeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHHHHHh
Q psy9141 112 CNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCL 163 (379)
Q Consensus 112 v~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr~~l 163 (379)
++|+++++|++|+.+++++++++. +|++ +.||.||.|.- .....+.+
T Consensus 239 ~~i~~~~~V~~I~~~~~~~~v~~~-~g~~---~~ad~VI~a~p-~~~~~~ll 285 (463)
T PRK12416 239 TVVKKGAVTTAVSKQGDRYEISFA-NHES---IQADYVVLAAP-HDIAETLL 285 (463)
T ss_pred ccEEcCCEEEEEEEcCCEEEEEEC-CCCE---EEeCEEEECCC-HHHHHhhc
Confidence 479999999999999999988887 8876 89999999884 33344433
No 175
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.60 E-value=9.7e-07 Score=90.61 Aligned_cols=37 Identities=27% Similarity=0.305 Sum_probs=34.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR 42 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~ 42 (379)
++||+|||+|.+|+++|+.+++.|.+|+|||+.+...
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~g 42 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVG 42 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 6899999999999999999999999999999987544
No 176
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.59 E-value=9.5e-07 Score=66.34 Aligned_cols=80 Identities=21% Similarity=0.304 Sum_probs=60.7
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEEe
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIHG 87 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~ 87 (379)
.|+|||||+.|+-+|..|++.|.+|+|+++.+.+.. .+.+.....+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~-----------~~~~~~~~~~~---------------------- 47 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLP-----------GFDPDAAKILE---------------------- 47 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSST-----------TSSHHHHHHHH----------------------
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhh-----------hcCHHHHHHHH----------------------
Confidence 489999999999999999999999999999986641 12233322221
Q ss_pred cCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCC
Q psy9141 88 QNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDN 138 (379)
Q Consensus 88 ~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G 138 (379)
..+.+ .|+++++++.+++++.++++++|++. ||
T Consensus 48 ----------------~~l~~-~gV~v~~~~~v~~i~~~~~~~~V~~~-~g 80 (80)
T PF00070_consen 48 ----------------EYLRK-RGVEVHTNTKVKEIEKDGDGVEVTLE-DG 80 (80)
T ss_dssp ----------------HHHHH-TTEEEEESEEEEEEEEETTSEEEEEE-TS
T ss_pred ----------------HHHHH-CCCEEEeCCEEEEEEEeCCEEEEEEe-cC
Confidence 11222 48999999999999999887778777 76
No 177
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.58 E-value=8e-07 Score=91.65 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=35.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR 42 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~ 42 (379)
.++||||||+|++|+++|+.+++.|.+|+|+||.+...
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~g 47 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFG 47 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCC
Confidence 36899999999999999999999999999999998654
No 178
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.58 E-value=1.1e-06 Score=88.41 Aligned_cols=33 Identities=24% Similarity=0.227 Sum_probs=31.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
|||+||||||+|+++|..+++.|++|+|+|+.+
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 699999999999999999999999999999875
No 179
>KOG2415|consensus
Probab=98.57 E-value=3.1e-07 Score=87.33 Aligned_cols=151 Identities=17% Similarity=0.181 Sum_probs=86.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHhC------CCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhC-C
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKN------QYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAH-G 77 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~------G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~-~ 77 (379)
..+||+|||||||||++|+.|.|. .++|+|+||........ -.|. .+.|.++..|- =-|.+..+. .
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gght-lSGa----viep~aldEL~--P~wke~~apl~ 147 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHT-LSGA----VIEPGALDELL--PDWKEDGAPLN 147 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCce-ecce----eeccchhhhhC--cchhhcCCccc
Confidence 368999999999999999998764 56999999998775321 1122 13343332210 112221111 2
Q ss_pred CCceeeE--EEecCCcEEEeeCCCCC---c-------H-----HHHhcCCCCeEEeCceEEEEEecCCe-EE-EEEc---
Q psy9141 78 IPMRARM--IHGQNGKLREIPYDPVH---N-------Q-----VELEQYPDCNIYFQHKLINLDVNSGN-VT-FYRT--- 135 (379)
Q Consensus 78 ~~~~~~~--~~~~~g~~~~~~~~~~~---~-------~-----~~~~~~~gv~i~~~~~v~~i~~~~~~-v~-v~~~--- 135 (379)
.++..-+ +....++ ..+|..... + + -..++..|++|+-+..+.++..++++ |. +.+.
T Consensus 148 t~vT~d~~~fLt~~~~-i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~G 226 (621)
T KOG2415|consen 148 TPVTSDKFKFLTGKGR-ISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVG 226 (621)
T ss_pred ccccccceeeeccCce-eecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeecccc
Confidence 3333323 3333333 222221111 1 1 23345579999988888887776653 32 2221
Q ss_pred --cCCc-------eeEEEeecEEEecCCCChHHHHHhh
Q psy9141 136 --EDNS-------ETKITDNQLIIGADGAYSGVRKCLM 164 (379)
Q Consensus 136 --~~G~-------~~~~i~adlVV~AdG~~S~vr~~l~ 164 (379)
.+|. -.+ +.|+..|-|.|.+..+-++++
T Consensus 227 I~k~G~pKd~FerGme-~hak~TifAEGc~G~Lskqi~ 263 (621)
T KOG2415|consen 227 ISKDGAPKDTFERGME-FHAKVTIFAEGCHGSLSKQII 263 (621)
T ss_pred ccCCCCccccccccce-ecceeEEEeccccchhHHHHH
Confidence 1221 123 899999999999987777774
No 180
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.57 E-value=9.3e-07 Score=86.02 Aligned_cols=54 Identities=7% Similarity=0.135 Sum_probs=43.3
Q ss_pred HHHhcCCCCeEEeCceEEEEEecCCe-EEEEEc--cCCceeEEEeecEEEecCCCChH
Q psy9141 104 VELEQYPDCNIYFQHKLINLDVNSGN-VTFYRT--EDNSETKITDNQLIIGADGAYSG 158 (379)
Q Consensus 104 ~~~~~~~gv~i~~~~~v~~i~~~~~~-v~v~~~--~~G~~~~~i~adlVV~AdG~~S~ 158 (379)
..+.+.++++++++++|++|++.+++ |.|... .+|+..+ +.|++|+...|++|.
T Consensus 189 ~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~-v~a~FVfvGAGG~aL 245 (488)
T PF06039_consen 189 EYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKRE-VRAKFVFVGAGGGAL 245 (488)
T ss_pred HHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEE-EECCEEEECCchHhH
Confidence 34455679999999999999998876 887653 1466666 999999999999984
No 181
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.56 E-value=2.1e-06 Score=86.67 Aligned_cols=37 Identities=19% Similarity=0.338 Sum_probs=33.6
Q ss_pred CCcEEEECCChHHHHHHHHHHhC----CCcEEEEccCCCCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKN----QYEVNLYEAREDIR 42 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~----G~~V~viE~~~~~~ 42 (379)
+.+|+|||||++||++|..|++. |.+|+|+|+.+.+.
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~G 62 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPG 62 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCC
Confidence 46899999999999999999995 68999999998765
No 182
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.56 E-value=1.4e-06 Score=87.35 Aligned_cols=64 Identities=23% Similarity=0.310 Sum_probs=47.1
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCC----CCCC----cccc--cccCHHHHHHHHHCCChH
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSG----LSEG----KSIN--LALSVRGREALRRIGLED 71 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~----~~~g----~~i~--~al~~~~~~~l~~lGl~~ 71 (379)
+|+|||||++||++|+.|+++|++|+|+|+++...... ..+| .+.+ ....++..++++++|+.+
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~ 74 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIED 74 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCcc
Confidence 58999999999999999999999999999998654210 0112 1111 123478899999999754
No 183
>PLN02612 phytoene desaturase
Probab=98.55 E-value=1.5e-06 Score=89.28 Aligned_cols=67 Identities=24% Similarity=0.359 Sum_probs=48.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCC-CC---CCCcc----cc--cccCHHHHHHHHHCCChHH
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNS-GL---SEGKS----IN--LALSVRGREALRRIGLEDK 72 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~-~~---~~g~~----i~--~al~~~~~~~l~~lGl~~~ 72 (379)
..+|+|||||++||++|+.|+++|++|+|+|+++..... .. .+|.. .+ ....++..++++++|+.+.
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~~~~ 169 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDR 169 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCCccc
Confidence 578999999999999999999999999999998754321 00 01211 11 1234678899999997443
No 184
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.55 E-value=2e-06 Score=95.27 Aligned_cols=40 Identities=30% Similarity=0.395 Sum_probs=36.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCC
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRN 43 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~ 43 (379)
+.++||||||+|.||+++|+.+++.|.+|+|+||.+....
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG 446 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGG 446 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence 4468999999999999999999999999999999976543
No 185
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.53 E-value=4.9e-07 Score=91.11 Aligned_cols=33 Identities=30% Similarity=0.333 Sum_probs=31.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEA 37 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~ 37 (379)
.+||++||||||+|+++|+.+++.|.+|+|||+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 469999999999999999999999999999998
No 186
>PLN02568 polyamine oxidase
Probab=98.52 E-value=1.8e-06 Score=88.11 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=36.7
Q ss_pred CCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCC
Q psy9141 110 PDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGA 155 (379)
Q Consensus 110 ~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~ 155 (379)
++..|+++++|+.|+.++++++|++. +|++ ++||.||.+.-.
T Consensus 253 ~~~~I~ln~~V~~I~~~~~~v~V~~~-dG~~---~~aD~VIvTvPl 294 (539)
T PLN02568 253 PPGTIQLGRKVTRIEWQDEPVKLHFA-DGST---MTADHVIVTVSL 294 (539)
T ss_pred CCCEEEeCCeEEEEEEeCCeEEEEEc-CCCE---EEcCEEEEcCCH
Confidence 44579999999999999999999998 8887 899999998754
No 187
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.52 E-value=1.4e-06 Score=74.29 Aligned_cols=42 Identities=7% Similarity=0.208 Sum_probs=35.0
Q ss_pred CCCeEE-eCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCC
Q psy9141 110 PDCNIY-FQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGA 155 (379)
Q Consensus 110 ~gv~i~-~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~ 155 (379)
.+++|. ...+|++++..++++.+.++ +|.. +.+|.||.|+|.
T Consensus 113 ~~i~v~~~~~~V~~i~~~~~~~~v~~~-~g~~---~~~d~VvLa~Gh 155 (156)
T PF13454_consen 113 AGITVRHVRAEVVDIRRDDDGYRVVTA-DGQS---IRADAVVLATGH 155 (156)
T ss_pred CCcEEEEEeeEEEEEEEcCCcEEEEEC-CCCE---EEeCEEEECCCC
Confidence 355544 35699999999999999888 9987 999999999995
No 188
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.52 E-value=8.2e-08 Score=84.89 Aligned_cols=116 Identities=21% Similarity=0.246 Sum_probs=68.6
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCC-ChHHHHhCCCCceeeEEE
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIG-LEDKLLAHGIPMRARMIH 86 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lG-l~~~l~~~~~~~~~~~~~ 86 (379)
||+||||||+|+++|..|++.+.+|+|+|+.+..... .. .+.. ..+.... ........ ...
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~----~~----~~~~---~~~~~~~~~~~~~~~~----~~~--- 62 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYN----SG----CIPS---PLLVEIAPHRHEFLPA----RLF--- 62 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHH----HS----HHHH---HHHHHHHHHHHHHHHH----HHG---
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccc----cc----cccc---cccccccccccccccc----ccc---
Confidence 7999999999999999999999999999876532110 10 0111 1110000 00000000 000
Q ss_pred ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeE-----EEEE-ccCCceeEEEeecEEEecCCCChH
Q psy9141 87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNV-----TFYR-TEDNSETKITDNQLIIGADGAYSG 158 (379)
Q Consensus 87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v-----~v~~-~~~G~~~~~i~adlVV~AdG~~S~ 158 (379)
. -...+. ..+++++.++++.+++.....+ .+.. . .++..+ +.+|+||.|+|..+.
T Consensus 63 -------------~-~~~~~~-~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~-~~~~~~-~~~d~lviAtG~~~~ 123 (201)
T PF07992_consen 63 -------------K-LVDQLK-NRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVE-TGDGRE-IKYDYLVIATGSRPR 123 (201)
T ss_dssp -------------H-HHHHHH-HHTHEEEHHHTEEEEEESTTEEEETCEEEEEEE-TTTEEE-EEEEEEEEESTEEEE
T ss_pred -------------c-cccccc-cceEEEeeccccccccccccccccCcccceeec-cCCceE-ecCCeeeecCccccc
Confidence 0 001222 2588898889999998877742 3321 2 344445 999999999997653
No 189
>PRK13748 putative mercuric reductase; Provisional
Probab=98.51 E-value=4.7e-07 Score=93.16 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=32.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
.+|||+||||||+|+++|..|++.|.+|+|||+..
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~ 131 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGT 131 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCc
Confidence 46999999999999999999999999999999873
No 190
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.51 E-value=4.8e-07 Score=93.35 Aligned_cols=38 Identities=21% Similarity=0.219 Sum_probs=34.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR 42 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~ 42 (379)
.++||+|||+|++|+++|+.+++.|.+|+||||.+...
T Consensus 11 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~g 48 (581)
T PRK06134 11 LECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFG 48 (581)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 36899999999999999999999999999999987543
No 191
>KOG0029|consensus
Probab=98.51 E-value=1.4e-06 Score=87.50 Aligned_cols=39 Identities=31% Similarity=0.544 Sum_probs=35.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR 42 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~ 42 (379)
+++.+|+|||||++||++|..|.+.|++|+|+|.++..+
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvG 51 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVG 51 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcC
Confidence 456899999999999999999999999999999998654
No 192
>KOG0042|consensus
Probab=98.50 E-value=3.5e-07 Score=89.54 Aligned_cols=57 Identities=26% Similarity=0.280 Sum_probs=47.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHH
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRR 66 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~ 66 (379)
..+||+|||||-+|.-+|+-.+-+|++|.++|+.+.....++.... |-|.+.++|++
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSkSTK-----LiHGGVRYLek 122 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKSTK-----LIHGGVRYLEK 122 (680)
T ss_pred CcccEEEECCCccCcceeehhhcccceeEEEecccccCCccccchh-----hhcccHHHHHH
Confidence 4699999999999999999999999999999999987765444343 45777777765
No 193
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.50 E-value=1.7e-07 Score=68.15 Aligned_cols=32 Identities=31% Similarity=0.643 Sum_probs=29.4
Q ss_pred EECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141 11 IVGGGLVGSLSACMFAKNQYEVNLYEAREDIR 42 (379)
Q Consensus 11 IVGaGpaGl~~A~~La~~G~~V~viE~~~~~~ 42 (379)
|||||++||++|+.|++.|++|+|+|+.+.+.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence 89999999999999999999999999998764
No 194
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.49 E-value=2.8e-06 Score=87.73 Aligned_cols=146 Identities=20% Similarity=0.248 Sum_probs=79.7
Q ss_pred cEEEECCChHHHHHHHHHH----hCCCcEEEEccCCCCCCCCCCCCc-ccccccCH----HHH-HHHH---HC--C----
Q psy9141 8 SVVIVGGGLVGSLSACMFA----KNQYEVNLYEAREDIRNSGLSEGK-SINLALSV----RGR-EALR---RI--G---- 68 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La----~~G~~V~viE~~~~~~~~~~~~g~-~i~~al~~----~~~-~~l~---~l--G---- 68 (379)
||+|||||.|||++|+.++ +.|.+|+|+||.......+..+|. +++..+.. .+. ..++ .. |
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~~s~s~A~G~~gi~~~~~~~~g~Ds~e~~~~d~~~~~~gl~d~ 80 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLERSGAVAQGLSAINTYLGTRFGENNAEDYVRYVRTDLMGLVRE 80 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCCCCCccccccchhhhhhhcccCCCCHHHHHHHHHHhcCCCCcH
Confidence 8999999999999999998 779999999998754332222221 12111210 001 1111 11 1
Q ss_pred ------------ChHHHHhCCCCceeeEEEecCCcEE-----EeeCCCC-CcH--HHHhcCCCCeEEeCceEEEEEecC-
Q psy9141 69 ------------LEDKLLAHGIPMRARMIHGQNGKLR-----EIPYDPV-HNQ--VELEQYPDCNIYFQHKLINLDVNS- 127 (379)
Q Consensus 69 ------------l~~~l~~~~~~~~~~~~~~~~g~~~-----~~~~~~~-~~~--~~~~~~~gv~i~~~~~v~~i~~~~- 127 (379)
..+.+.+.+.++.. ...+|... ...++.. ..+ .......+++++.++.++++..++
T Consensus 81 ~lV~~lv~~s~~~i~~L~~~Gv~F~~---~~~~G~~~~~g~~~~~~gG~~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~ 157 (614)
T TIGR02061 81 DLIFDMARHVDDSVHLFEEWGLPLWI---KPEDGKYVREGRWQIMIHGESYKPIVAEAAKNALGDIFERIFIVKLLLDKN 157 (614)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcee---cCCCCccccCCCcccCcCchhHHHHHHHHHHhCCCeEEcccEEEEEEecCC
Confidence 11223333444421 00122111 0011110 001 111222457999999999988754
Q ss_pred --Ce---EEEE-EccCCceeEEEeecEEEecCCCChH
Q psy9141 128 --GN---VTFY-RTEDNSETKITDNQLIIGADGAYSG 158 (379)
Q Consensus 128 --~~---v~v~-~~~~G~~~~~i~adlVV~AdG~~S~ 158 (379)
+. +.+. .. +|+..+ +.|+.||.|+|.++.
T Consensus 158 ~~GrV~Gv~~~~~~-~g~~~~-i~AkaVVLATGG~~~ 192 (614)
T TIGR02061 158 TPNRIAGAVGFNVR-ANEVHV-FKAKTVIVAAGGAVN 192 (614)
T ss_pred CCCeEEEEEEEEeC-CCcEEE-EECCEEEECCCcccc
Confidence 33 3332 34 677666 899999999999873
No 195
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.48 E-value=2.8e-06 Score=85.56 Aligned_cols=66 Identities=30% Similarity=0.473 Sum_probs=48.1
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCC--C--CCCCccc----c--cccCHHHHHHHHHCCChHHH
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNS--G--LSEGKSI----N--LALSVRGREALRRIGLEDKL 73 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~--~--~~~g~~i----~--~al~~~~~~~l~~lGl~~~l 73 (379)
+|+|||||++||++|+.|++.|++|+|+|+.+..... + ..+|..+ | ....++..++++++|+.+.+
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~~~~ 76 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAEDNL 76 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCcccc
Confidence 5899999999999999999999999999999866421 0 0122211 1 12346788889999976554
No 196
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.48 E-value=2.8e-07 Score=89.99 Aligned_cols=109 Identities=22% Similarity=0.320 Sum_probs=69.5
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCC----CCCCCcccccccCHHHHHHHHHCCChH-HHHhCCCCce
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNS----GLSEGKSINLALSVRGREALRRIGLED-KLLAHGIPMR 81 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~----~~~~g~~i~~al~~~~~~~l~~lGl~~-~l~~~~~~~~ 81 (379)
.||+|||||++|+.+|+.|++.|++|+|+|+++..... ...+.+.. +.+..+...+...|+|. ++...+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a~~~~~~~ervc--a~Slgs~~ll~a~Gll~~em~~lgsl-- 78 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDGFAELVC--SNSFRSDSLTNAVGLLKEEMRRLGSL-- 78 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcccccCcccccccc--chhhhhhhHHhcCCchHHHHHHhcch--
Confidence 49999999999999999999999999999988765321 11223333 46677788899999887 34332221
Q ss_pred eeEEEecCCcEEEeeCC-CC-CcH--------HHHhcCCCCeEEeCceEEEEE
Q psy9141 82 ARMIHGQNGKLREIPYD-PV-HNQ--------VELEQYPDCNIYFQHKLINLD 124 (379)
Q Consensus 82 ~~~~~~~~g~~~~~~~~-~~-~~~--------~~~~~~~gv~i~~~~~v~~i~ 124 (379)
.+...+ ....+.. .. ..+ +.+...++++++ ..+|+++.
T Consensus 79 --~~~aad--~~~vPA~gaLvvdR~~~~~~L~~~L~~~pnI~l~-~~eV~~l~ 126 (436)
T PRK05335 79 --IMEAAD--AHRVPAGGALAVDREGFSEYVTEALENHPLITVI-REEVTEIP 126 (436)
T ss_pred --heeccc--ccCCCCccceecCHHHHHHHHHHHHHcCCCcEEE-ccchhccc
Confidence 111110 0111111 11 111 455677899998 56888875
No 197
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.48 E-value=2.8e-06 Score=87.23 Aligned_cols=44 Identities=20% Similarity=0.268 Sum_probs=37.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEG 49 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g 49 (379)
.++||||||+| +|+++|+.+++.|.+|+||||.+.....+...|
T Consensus 15 ~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~~g 58 (564)
T PRK12845 15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTARSG 58 (564)
T ss_pred ceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccCcC
Confidence 36899999999 899999999999999999999976654444444
No 198
>PRK14727 putative mercuric reductase; Provisional
Probab=98.48 E-value=5.9e-07 Score=90.62 Aligned_cols=38 Identities=24% Similarity=0.254 Sum_probs=34.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR 42 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~ 42 (379)
.++||+||||||+|+++|..|++.|.+|+|+|+.....
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~G 52 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIG 52 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcce
Confidence 46999999999999999999999999999999875443
No 199
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.45 E-value=1.7e-06 Score=86.34 Aligned_cols=114 Identities=14% Similarity=0.230 Sum_probs=73.5
Q ss_pred cEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141 8 SVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI 85 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~ 85 (379)
+|+|||||++|+.+|..|++. +.+|+|||+.+..... .-+ + +.. +. +...
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~----~~~----l-p~~---~~--~~~~-------------- 54 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFA----NCA----L-PYY---IG--EVVE-------------- 54 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccc----cCC----c-chh---hc--CccC--------------
Confidence 799999999999999999887 6799999998754311 100 0 000 00 0000
Q ss_pred EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141 86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG 158 (379)
Q Consensus 86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~ 158 (379)
.....+++. .....+..+++++.+++|++|+.++..+.+....+++..+ +++|.||.|+|....
T Consensus 55 ----~~~~~~~~~----~~~~~~~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~-~~yd~lviAtGs~~~ 118 (438)
T PRK13512 55 ----DRKYALAYT----PEKFYDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFE-ESYDKLILSPGASAN 118 (438)
T ss_pred ----CHHHcccCC----HHHHHHhCCCEEEeCCEEEEEECCCCEEEEEECCCCcEEe-eecCEEEECCCCCCC
Confidence 000000110 0223334689999999999999988888877541234434 789999999998863
No 200
>PLN02487 zeta-carotene desaturase
Probab=98.45 E-value=4.8e-06 Score=85.17 Aligned_cols=68 Identities=26% Similarity=0.485 Sum_probs=50.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCC-C-C--CCCc----cccc--ccCHHHHHHHHHCCChHHHH
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNS-G-L--SEGK----SINL--ALSVRGREALRRIGLEDKLL 74 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~-~-~--~~g~----~i~~--al~~~~~~~l~~lGl~~~l~ 74 (379)
.+|+|||||++||++|+.|++.|++|+|+|+.+..... . . .+|. +.|. ...++..++++++|+.+++.
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~~~~~ 153 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADENLL 153 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCccccc
Confidence 58999999999999999999999999999999876421 0 0 1222 1111 13477899999999876543
No 201
>KOG1335|consensus
Probab=98.44 E-value=7.7e-07 Score=83.90 Aligned_cols=57 Identities=9% Similarity=0.039 Sum_probs=44.9
Q ss_pred HHHhcCCCCeEEeCceEEEEEecCC-eEEEEEc--cCCceeEEEeecEEEecCCCChHHHH
Q psy9141 104 VELEQYPDCNIYFQHKLINLDVNSG-NVTFYRT--EDNSETKITDNQLIIGADGAYSGVRK 161 (379)
Q Consensus 104 ~~~~~~~gv~i~~~~~v~~i~~~~~-~v~v~~~--~~G~~~~~i~adlVV~AdG~~S~vr~ 161 (379)
.+..+..+++++++++|+.++.+++ .+.+.+. .+|+..+ ++||.+..|.|+..-+..
T Consensus 259 qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~t-le~DvlLVsiGRrP~t~G 318 (506)
T KOG1335|consen 259 QRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKET-LECDVLLVSIGRRPFTEG 318 (506)
T ss_pred HHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeE-EEeeEEEEEccCcccccC
Confidence 3455567999999999999999887 5665543 3667667 999999999999876554
No 202
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.44 E-value=2.4e-06 Score=84.11 Aligned_cols=109 Identities=17% Similarity=0.235 Sum_probs=70.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCC--cEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCcee
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQY--EVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRA 82 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~--~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~ 82 (379)
++.+|+|||||++|+.+|..|++.|. +|+|+++.+.... .+. .++ ..++ .... ..
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y-----~r~---~l~---~~~~----------~~~~--~~ 58 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPY-----ERP---PLS---KSML----------LEDS--PQ 58 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCC-----CCC---CCC---HHHH----------CCCC--cc
Confidence 45689999999999999999999987 7999998764321 110 011 0111 0000 00
Q ss_pred eEEEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141 83 RMIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS 157 (379)
Q Consensus 83 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S 157 (379)
.. +... .......+++++.++.|+.++.+... +.+. +|++ +.+|.||.|+|...
T Consensus 59 ~~------------~~~~---~~~~~~~~i~~~~g~~V~~id~~~~~--v~~~-~g~~---~~yd~LViATGs~~ 112 (396)
T PRK09754 59 LQ------------QVLP---ANWWQENNVHLHSGVTIKTLGRDTRE--LVLT-NGES---WHWDQLFIATGAAA 112 (396)
T ss_pred cc------------ccCC---HHHHHHCCCEEEcCCEEEEEECCCCE--EEEC-CCCE---EEcCEEEEccCCCC
Confidence 00 0000 11112358999999999999876544 4455 7877 99999999999886
No 203
>PTZ00058 glutathione reductase; Provisional
Probab=98.43 E-value=6.1e-07 Score=91.75 Aligned_cols=35 Identities=29% Similarity=0.360 Sum_probs=33.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
.+|||+||||||+|.++|..+++.|.+|+|||+..
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~ 81 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDY 81 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEeccc
Confidence 46999999999999999999999999999999874
No 204
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.43 E-value=3.1e-06 Score=87.37 Aligned_cols=39 Identities=26% Similarity=0.336 Sum_probs=35.1
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNS 44 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~ 44 (379)
++||+|||+|++|+++|+.+++.|.+|+||||.+.....
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~ 54 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGT 54 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCc
Confidence 579999999999999999999999999999998765433
No 205
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.42 E-value=1.1e-06 Score=88.26 Aligned_cols=133 Identities=17% Similarity=0.186 Sum_probs=74.3
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHH---hCCCCceeeE
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLL---AHGIPMRARM 84 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~---~~~~~~~~~~ 84 (379)
||+||||||+|+.+|..+++.|.+|+|+|+.+.... +-.++ ++ .+..+++...+.+.+. ..+....
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~gG~---c~~~g---ci--PsK~l~~~a~~~~~~~~~~~~g~~~~--- 71 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDGLGGA---AVLTD---CV--PSKTLIATAEVRTELRRAAELGIRFI--- 71 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCCc---ccccC---Cc--chHHHHHHHHHHHHHHHHHhCCcccc---
Confidence 899999999999999999999999999998753211 11111 11 1222232211112111 1111100
Q ss_pred EEecCCcEEEeeCCCCCc------------HHHHhcCCCCeEEeCceEEEEE--ecCCeEEEEEccCCceeEEEeecEEE
Q psy9141 85 IHGQNGKLREIPYDPVHN------------QVELEQYPDCNIYFQHKLINLD--VNSGNVTFYRTEDNSETKITDNQLII 150 (379)
Q Consensus 85 ~~~~~g~~~~~~~~~~~~------------~~~~~~~~gv~i~~~~~v~~i~--~~~~~v~v~~~~~G~~~~~i~adlVV 150 (379)
..+. ..+++..... .....+..+++++.++ ++.++ .+++.+++.+. +|+..+ +.+|.||
T Consensus 72 ---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~-~~~~~~~~~~~~v~V~~~-~g~~~~-~~~d~lV 144 (466)
T PRK07845 72 ---DDGE-ARVDLPAVNARVKALAAAQSADIRARLEREGVRVIAGR-GRLIDPGLGPHRVKVTTA-DGGEET-LDADVVL 144 (466)
T ss_pred ---cCcc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE-EEEeecccCCCEEEEEeC-CCceEE-EecCEEE
Confidence 0000 0011110000 0122233589998874 33333 45677888877 776334 9999999
Q ss_pred ecCCCChH
Q psy9141 151 GADGAYSG 158 (379)
Q Consensus 151 ~AdG~~S~ 158 (379)
.|+|....
T Consensus 145 iATGs~p~ 152 (466)
T PRK07845 145 IATGASPR 152 (466)
T ss_pred EcCCCCCC
Confidence 99999864
No 206
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.42 E-value=5.4e-06 Score=89.75 Aligned_cols=36 Identities=28% Similarity=0.400 Sum_probs=33.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED 40 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~ 40 (379)
.++||+|||||.|||++|+.+++.|.+|+|+||.+.
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 358999999999999999999999999999999875
No 207
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.41 E-value=2.9e-06 Score=84.54 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=39.2
Q ss_pred hcCCCCeEEeCceEEEEEec--CCeEE-EEEccCCceeEEEeecEEEecCCCChHHHHHh
Q psy9141 107 EQYPDCNIYFQHKLINLDVN--SGNVT-FYRTEDNSETKITDNQLIIGADGAYSGVRKCL 163 (379)
Q Consensus 107 ~~~~gv~i~~~~~v~~i~~~--~~~v~-v~~~~~G~~~~~i~adlVV~AdG~~S~vr~~l 163 (379)
.+..+++|+++++|+++..+ ++.+. +... ++. .+ +.|+.||.|+|.++.-++++
T Consensus 133 a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~-~~~-~~-i~ak~VIlAtGG~~~n~~~~ 189 (432)
T TIGR02485 133 AERLGVEIRYGIAVDRIPPEAFDGAHDGPLTT-VGT-HR-ITTQALVLAAGGLGANRDWL 189 (432)
T ss_pred HHHcCCEEEeCCEEEEEEecCCCCeEEEEEEc-CCc-EE-EEcCEEEEcCCCcccCHHHH
Confidence 34468999999999999876 34443 3333 332 23 89999999999998766655
No 208
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.38 E-value=1.1e-06 Score=87.14 Aligned_cols=138 Identities=15% Similarity=0.146 Sum_probs=77.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRAR 83 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~ 83 (379)
|.+||++||||||+|..+|..+++.|.+|+++|+....... +-..+ ++ .+..++....+.+.+..... ..++
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGt--Cln~G---CI--PsK~Ll~~a~~~~~~~~~~~-~~Gi 73 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGT--CLNVG---CI--PSKALLHAAEVIEEARHAAK-EYGI 73 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCce--EEeeC---cc--ccHHHHHHHHHHHHHhhccc-ccce
Confidence 45799999999999999999999999999999999633211 11221 22 23333333322222221110 1111
Q ss_pred EEEecCCcEEEeeCCCCCc------------HHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEe
Q psy9141 84 MIHGQNGKLREIPYDPVHN------------QVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIG 151 (379)
Q Consensus 84 ~~~~~~g~~~~~~~~~~~~------------~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~ 151 (379)
..... .++|..... .+.+.+..+++++.++.- + .++..+.|... +.++ ++|+.+|.
T Consensus 74 ~~~~~-----~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~--f-~~~~~v~V~~~-~~~~---~~a~~iiI 141 (454)
T COG1249 74 SAEVP-----KIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEAR--F-VDPHTVEVTGE-DKET---ITADNIII 141 (454)
T ss_pred ecCCC-----CcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEE--E-CCCCEEEEcCC-CceE---EEeCEEEE
Confidence 11100 111111100 034455568998887431 1 12556666532 2344 99999999
Q ss_pred cCCCChHHHH
Q psy9141 152 ADGAYSGVRK 161 (379)
Q Consensus 152 AdG~~S~vr~ 161 (379)
|+|.+.....
T Consensus 142 ATGS~p~~~~ 151 (454)
T COG1249 142 ATGSRPRIPP 151 (454)
T ss_pred cCCCCCcCCC
Confidence 9999975443
No 209
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.34 E-value=3.4e-06 Score=86.02 Aligned_cols=42 Identities=26% Similarity=0.276 Sum_probs=37.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCC
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSG 45 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~ 45 (379)
+.++||+|||||.|||.+|+.+++.|.+|+|+||....+..+
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t 45 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHT 45 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCch
Confidence 457899999999999999999999999999999998766443
No 210
>PRK12839 hypothetical protein; Provisional
Probab=98.32 E-value=5.9e-06 Score=85.02 Aligned_cols=39 Identities=26% Similarity=0.212 Sum_probs=35.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR 42 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~ 42 (379)
..++||+|||+|++|+++|+.+++.|.+|+||||.....
T Consensus 6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~g 44 (572)
T PRK12839 6 THTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCG 44 (572)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 347899999999999999999999999999999987544
No 211
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.31 E-value=4.5e-06 Score=83.35 Aligned_cols=113 Identities=17% Similarity=0.255 Sum_probs=70.5
Q ss_pred cEEEECCChHHHHHHHHHHhCC--CcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQ--YEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI 85 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G--~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~ 85 (379)
+|+|||||++|+++|..|++.+ .+|+|||+.+..... . .++ +......
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~----~-----------------~~~---------~~~~~~~ 51 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFG----A-----------------CGL---------PYFVGGF 51 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceee----c-----------------CCC---------ceEeccc
Confidence 6999999999999999999875 589999988744211 0 000 0000000
Q ss_pred EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141 86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG 158 (379)
Q Consensus 86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~ 158 (379)
...... . .... ...+. ..+++++.+++|++++.++..+++....+|++.+ +.+|.||.|+|....
T Consensus 52 ~~~~~~---~-~~~~--~~~~~-~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~-~~yd~lviAtG~~~~ 116 (444)
T PRK09564 52 FDDPNT---M-IART--PEEFI-KSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFN-DTYDKLMIATGARPI 116 (444)
T ss_pred cCCHHH---h-hcCC--HHHHH-HCCCeEEecCEEEEEECCCCEEEEEECCCCCEEE-ecCCEEEECCCCCCC
Confidence 000000 0 0001 02233 3589999999999999888888776431355522 349999999999753
No 212
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.31 E-value=7.1e-06 Score=80.21 Aligned_cols=100 Identities=16% Similarity=0.241 Sum_probs=74.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH 86 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 86 (379)
.+|+|||||+.|+-+|..|++.|.+|+++|+.+.... + .+.+.....+
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~------~----~~~~~~~~~l---------------------- 189 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLA------S----LMPPEVSSRL---------------------- 189 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccc------h----hCCHHHHHHH----------------------
Confidence 4799999999999999999999999999998753311 0 0111100000
Q ss_pred ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHH
Q psy9141 87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGV 159 (379)
Q Consensus 87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~v 159 (379)
....+..++++++++++++++.+++.+.+.+. +|++ +.+|+||.|+|..+..
T Consensus 190 -----------------~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~-~g~~---i~~D~vI~a~G~~p~~ 241 (377)
T PRK04965 190 -----------------QHRLTEMGVHLLLKSQLQGLEKTDSGIRATLD-SGRS---IEVDAVIAAAGLRPNT 241 (377)
T ss_pred -----------------HHHHHhCCCEEEECCeEEEEEccCCEEEEEEc-CCcE---EECCEEEECcCCCcch
Confidence 11122358999999999999887777788888 8887 9999999999987643
No 213
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.30 E-value=1.6e-05 Score=77.85 Aligned_cols=50 Identities=10% Similarity=0.128 Sum_probs=39.2
Q ss_pred hcCCCCeEEeCceEEEEEecCCeEEE-EEccCCceeEEEeecEEEecCCCC-hH
Q psy9141 107 EQYPDCNIYFQHKLINLDVNSGNVTF-YRTEDNSETKITDNQLIIGADGAY-SG 158 (379)
Q Consensus 107 ~~~~gv~i~~~~~v~~i~~~~~~v~v-~~~~~G~~~~~i~adlVV~AdG~~-S~ 158 (379)
.+..|++++.+++|++++.++++++. ... ++...+ ++||.||.|+|+| |.
T Consensus 273 ~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~-~g~~~~-l~AD~vVLAaGaw~S~ 324 (419)
T TIGR03378 273 FEQLGGVMLPGDRVLRAEFEGNRVTRIHTR-NHRDIP-LRADHFVLASGSFFSN 324 (419)
T ss_pred HHHCCCEEEECcEEEEEEeeCCeEEEEEec-CCccce-EECCEEEEccCCCcCH
Confidence 34568999999999999988887774 445 552223 9999999999999 84
No 214
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.25 E-value=2e-05 Score=79.99 Aligned_cols=36 Identities=22% Similarity=0.269 Sum_probs=34.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR 42 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~ 42 (379)
|||+|||+||+|+.+|..|++.|++|+|||+.....
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~ 36 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADS 36 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccC
Confidence 699999999999999999999999999999998665
No 215
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.24 E-value=1.5e-05 Score=78.50 Aligned_cols=99 Identities=17% Similarity=0.207 Sum_probs=72.3
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH 86 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 86 (379)
.+|+|||+|++|+-+|..|++.|.+|+|+|+.+.+.. + ...+...+.+
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~------~----~~~~~~~~~l---------------------- 192 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMG------R----NAPPPVQRYL---------------------- 192 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchh------h----hcCHHHHHHH----------------------
Confidence 4799999999999999999999999999998763311 0 0111110000
Q ss_pred ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHH
Q psy9141 87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGV 159 (379)
Q Consensus 87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~v 159 (379)
....+..++++++++++++++. ++.+.+.+. +|++ +.+|+||.|.|.....
T Consensus 193 -----------------~~~l~~~GV~i~~~~~V~~i~~-~~~~~v~l~-~g~~---i~aD~Vv~a~G~~pn~ 243 (396)
T PRK09754 193 -----------------LQRHQQAGVRILLNNAIEHVVD-GEKVELTLQ-SGET---LQADVVIYGIGISAND 243 (396)
T ss_pred -----------------HHHHHHCCCEEEeCCeeEEEEc-CCEEEEEEC-CCCE---EECCEEEECCCCChhh
Confidence 1111235899999999999876 556677787 8887 9999999999998764
No 216
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.24 E-value=2e-05 Score=86.10 Aligned_cols=37 Identities=24% Similarity=0.307 Sum_probs=34.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR 42 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~ 42 (379)
.+||+|||||||||++|+.|++.|++|+|+|+.+...
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~G 199 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAG 199 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 5799999999999999999999999999999987654
No 217
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.23 E-value=6.7e-06 Score=82.99 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=31.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhC-CCcEEEEccC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKN-QYEVNLYEAR 38 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~-G~~V~viE~~ 38 (379)
++|||+||||||+|..+|..+++. |.+|+|||+.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 479999999999999999999996 9999999984
No 218
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.22 E-value=6.4e-06 Score=83.16 Aligned_cols=33 Identities=24% Similarity=0.276 Sum_probs=31.6
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAR 38 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~ 38 (379)
+|||+||||||+|+.+|..+++.|.+|++||+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 589999999999999999999999999999974
No 219
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.19 E-value=2.6e-05 Score=73.00 Aligned_cols=65 Identities=17% Similarity=0.447 Sum_probs=46.7
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCC--CC---CCCccccc---------ccCHHHHHHHHHCCChH
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNS--GL---SEGKSINL---------ALSVRGREALRRIGLED 71 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~--~~---~~g~~i~~---------al~~~~~~~l~~lGl~~ 71 (379)
..+|+|||+|++||++|+.|+++ ++|+++|.+...... .. -++.++.+ -..|+-.++++.+|+..
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~iGv~t 86 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTIGVDT 86 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHcCCCC
Confidence 45899999999999999999886 699999998765422 11 13333210 13577889999998743
No 220
>PLN02546 glutathione reductase
Probab=98.18 E-value=9.5e-06 Score=83.08 Aligned_cols=32 Identities=13% Similarity=0.131 Sum_probs=31.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEA 37 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~ 37 (379)
+|||+||||||+|..+|..+++.|.+|+|+|+
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 58999999999999999999999999999996
No 221
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.16 E-value=7.6e-06 Score=82.15 Aligned_cols=33 Identities=30% Similarity=0.492 Sum_probs=31.1
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARED 40 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~ 40 (379)
+|+||||||+|+++|..+++.|.+|+|||+.+.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~ 34 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADL 34 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence 699999999999999999999999999998753
No 222
>PRK07208 hypothetical protein; Provisional
Probab=98.16 E-value=2.5e-06 Score=86.08 Aligned_cols=39 Identities=38% Similarity=0.516 Sum_probs=35.3
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR 42 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~ 42 (379)
|+..||+|||||++||++|+.|+++|++|+|+|+++...
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~G 40 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVG 40 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 456799999999999999999999999999999987654
No 223
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.13 E-value=4.6e-05 Score=79.74 Aligned_cols=36 Identities=28% Similarity=0.510 Sum_probs=33.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~ 41 (379)
..+|+||||||+|+++|..|++.|++|+|+|+.+..
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~ 228 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQA 228 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 468999999999999999999999999999998754
No 224
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.10 E-value=3e-06 Score=85.09 Aligned_cols=35 Identities=31% Similarity=0.353 Sum_probs=32.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccC
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAR 38 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~ 38 (379)
|.+|||+||||||+|+++|..|++.|.+|+|||+.
T Consensus 1 m~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~ 35 (460)
T PRK06292 1 MEKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG 35 (460)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 45699999999999999999999999999999984
No 225
>KOG2844|consensus
Probab=98.10 E-value=2.6e-05 Score=78.44 Aligned_cols=56 Identities=9% Similarity=0.112 Sum_probs=43.0
Q ss_pred HHHhcCCCCeEEeCceEEEEEecCCe-EEEEEccCCceeEEEeecEEEecCCCChHHHHHhh
Q psy9141 104 VELEQYPDCNIYFQHKLINLDVNSGN-VTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLM 164 (379)
Q Consensus 104 ~~~~~~~gv~i~~~~~v~~i~~~~~~-v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr~~l~ 164 (379)
...++..|+.|..++.|+++....+. +-|.+. -|. |++..||.|+|.|...-..+.
T Consensus 194 a~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~-~G~----iet~~~VNaaGvWAr~Vg~m~ 250 (856)
T KOG2844|consen 194 ARAASALGALVIENCPVTGLHVETDKFGGVETP-HGS----IETECVVNAAGVWAREVGAMA 250 (856)
T ss_pred HHHHHhcCcEEEecCCcceEEeecCCccceecc-Ccc----eecceEEechhHHHHHhhhhc
Confidence 34566679999999999999776553 457776 787 899999999999985444443
No 226
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.09 E-value=1.6e-05 Score=79.73 Aligned_cols=33 Identities=15% Similarity=0.219 Sum_probs=28.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
++||++|||+||+|..+|. +..|.+|++||+..
T Consensus 1 ~~yD~vvIG~G~~g~~aa~--~~~g~~V~lie~~~ 33 (452)
T TIGR03452 1 RHYDLIIIGTGSGNSIPDP--RFADKRIAIVEKGT 33 (452)
T ss_pred CCcCEEEECCCHHHHHHHH--HHCCCeEEEEeCCC
Confidence 3699999999999988864 45799999999865
No 227
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.09 E-value=5.1e-06 Score=81.65 Aligned_cols=66 Identities=27% Similarity=0.352 Sum_probs=45.9
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCc--ccccccCHHHHHHHHHCCChHH
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGK--SINLALSVRGREALRRIGLEDK 72 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~--~i~~al~~~~~~~l~~lGl~~~ 72 (379)
+||+|||||++|+.+|+.|++.|++|+|+|+++.........+. ......+..+..+++..|+|.+
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~p~~~~~~~~elvcs~Slgg~~l~~a~Gil~~ 68 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLTPAHHTEDLAELVCSNSLGAKALDRAAGLLKT 68 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccCchhhhhhhhhhcccccccchhHHhccCcHHH
Confidence 48999999999999999999999999999988754321000000 0111234456677788887754
No 228
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.09 E-value=4.2e-05 Score=76.06 Aligned_cols=104 Identities=23% Similarity=0.273 Sum_probs=79.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH 86 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 86 (379)
..++|||||+.|+-+|..+++.|.+|+|+|+.+..-.. ..+...+.+.
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~-----------~D~ei~~~~~--------------------- 221 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG-----------EDPEISKELT--------------------- 221 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc-----------CCHHHHHHHH---------------------
Confidence 47999999999999999999999999999999755321 1111111110
Q ss_pred ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHHHHH
Q psy9141 87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKC 162 (379)
Q Consensus 87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr~~ 162 (379)
..+.+ .+++++.+++++.++..++++.+.++ +|+..+ +++|.|+.|.|+...+-..
T Consensus 222 -----------------~~l~~-~gv~i~~~~~v~~~~~~~~~v~v~~~-~g~~~~-~~ad~vLvAiGR~Pn~~~L 277 (454)
T COG1249 222 -----------------KQLEK-GGVKILLNTKVTAVEKKDDGVLVTLE-DGEGGT-IEADAVLVAIGRKPNTDGL 277 (454)
T ss_pred -----------------HHHHh-CCeEEEccceEEEEEecCCeEEEEEe-cCCCCE-EEeeEEEEccCCccCCCCC
Confidence 12333 57899999999999988877888887 776323 8999999999999887754
No 229
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.08 E-value=5.3e-05 Score=76.35 Aligned_cols=102 Identities=24% Similarity=0.302 Sum_probs=71.3
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH 86 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 86 (379)
.+|+|||||++|+-+|..|++.|.+|+++|+.+..... ..+...+.+.
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~-----------~~~~~~~~l~--------------------- 228 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPT-----------EDAELSKEVA--------------------- 228 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCc-----------CCHHHHHHHH---------------------
Confidence 58999999999999999999999999999988643210 0111111110
Q ss_pred ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEe-cCCeEE-EEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141 87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDV-NSGNVT-FYRTEDNSETKITDNQLIIGADGAYSGVR 160 (379)
Q Consensus 87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~-~~~~v~-v~~~~~G~~~~~i~adlVV~AdG~~S~vr 160 (379)
..+ +..|++++.+++|++++. .++++. +.+. +|+..+ +.+|.||.|.|+...+.
T Consensus 229 -----------------~~l-~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~-~g~~~~-i~~D~vi~a~G~~p~~~ 284 (472)
T PRK05976 229 -----------------RLL-KKLGVRVVTGAKVLGLTLKKDGGVLIVAEH-NGEEKT-LEADKVLVSVGRRPNTE 284 (472)
T ss_pred -----------------HHH-HhcCCEEEeCcEEEEEEEecCCCEEEEEEe-CCceEE-EEeCEEEEeeCCccCCC
Confidence 112 225899999999999975 233443 4455 775445 99999999999987654
No 230
>PRK07846 mycothione reductase; Reviewed
Probab=98.05 E-value=4e-05 Score=76.78 Aligned_cols=99 Identities=20% Similarity=0.305 Sum_probs=73.5
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH 86 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 86 (379)
.+|+|||||+.|+-+|..|++.|.+|+++|+.+.... .+.+...+.+
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~-----------~~d~~~~~~l---------------------- 213 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR-----------HLDDDISERF---------------------- 213 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc-----------ccCHHHHHHH----------------------
Confidence 5899999999999999999999999999998753310 0111110000
Q ss_pred ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141 87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVR 160 (379)
Q Consensus 87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr 160 (379)
.... ..++++++++++++++.+++++.+.+. +|++ +++|.||.|.|+.+.+.
T Consensus 214 -----------------~~l~-~~~v~i~~~~~v~~i~~~~~~v~v~~~-~g~~---i~~D~vl~a~G~~pn~~ 265 (451)
T PRK07846 214 -----------------TELA-SKRWDVRLGRNVVGVSQDGSGVTLRLD-DGST---VEADVLLVATGRVPNGD 265 (451)
T ss_pred -----------------HHHH-hcCeEEEeCCEEEEEEEcCCEEEEEEC-CCcE---eecCEEEEEECCccCcc
Confidence 0111 136888999999999877777778877 8876 99999999999988654
No 231
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.05 E-value=3.4e-05 Score=75.37 Aligned_cols=108 Identities=16% Similarity=0.193 Sum_probs=67.8
Q ss_pred CcEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeE
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARM 84 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~ 84 (379)
.+|+|||||+||+.+|..|.+. ..+|+||++.+..... +. .++. . + .........
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~-----~~---~l~~----~---------~-~~~~~~~~~- 59 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYN-----KP---DLSH----V---------F-SQGQRADDL- 59 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcC-----cC---cCcH----H---------H-hCCCCHHHh-
Confidence 4899999999999999999886 4589999988743211 10 0110 0 0 000000000
Q ss_pred EEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141 85 IHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG 158 (379)
Q Consensus 85 ~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~ 158 (379)
... ......+..+++++.+++|++++.+...++ + +|.+ +.+|.||.|+|....
T Consensus 60 -------------~~~-~~~~~~~~~gv~~~~~~~V~~id~~~~~v~--~--~~~~---~~yd~LVlATG~~~~ 112 (377)
T PRK04965 60 -------------TRQ-SAGEFAEQFNLRLFPHTWVTDIDAEAQVVK--S--QGNQ---WQYDKLVLATGASAF 112 (377)
T ss_pred -------------hcC-CHHHHHHhCCCEEECCCEEEEEECCCCEEE--E--CCeE---EeCCEEEECCCCCCC
Confidence 000 002233345899999999999987665433 3 5655 999999999998763
No 232
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.05 E-value=1.7e-05 Score=78.76 Aligned_cols=110 Identities=15% Similarity=0.147 Sum_probs=68.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRAR 83 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~ 83 (379)
+++.+|||||||.+|+.+|..|.+.+.+|+|||+++.... .+. + .............
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~-------------~~~----l------~~~~~g~~~~~~~ 64 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLF-------------TPL----L------PQTTTGTLEFRSI 64 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcch-------------hhh----H------HHhcccCCChHHh
Confidence 5567999999999999999999877899999998763321 110 0 0100000000000
Q ss_pred EEEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEE--------ccCCceeEEEeecEEEecCCC
Q psy9141 84 MIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYR--------TEDNSETKITDNQLIIGADGA 155 (379)
Q Consensus 84 ~~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~--------~~~G~~~~~i~adlVV~AdG~ 155 (379)
..++ .......++++.. .+|++|+.++..+++.. . +|.+ +.+|+||.|+|.
T Consensus 65 ----------~~~~------~~~~~~~~~~~i~-~~V~~Id~~~~~v~~~~~~~~~~~~~-~g~~---i~yD~LViAtGs 123 (424)
T PTZ00318 65 ----------CEPV------RPALAKLPNRYLR-AVVYDVDFEEKRVKCGVVSKSNNANV-NTFS---VPYDKLVVAHGA 123 (424)
T ss_pred ----------HHHH------HHHhccCCeEEEE-EEEEEEEcCCCEEEEecccccccccC-CceE---ecCCEEEECCCc
Confidence 0000 1112224566654 58999988888877732 2 4555 999999999999
Q ss_pred Ch
Q psy9141 156 YS 157 (379)
Q Consensus 156 ~S 157 (379)
..
T Consensus 124 ~~ 125 (424)
T PTZ00318 124 RP 125 (424)
T ss_pred cc
Confidence 75
No 233
>KOG2404|consensus
Probab=98.02 E-value=5.1e-05 Score=70.35 Aligned_cols=37 Identities=30% Similarity=0.383 Sum_probs=32.7
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCC
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNS 44 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~ 44 (379)
.|+|||+|.|||+++..+...|-.|+++|+.......
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGN 47 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGN 47 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCc
Confidence 6999999999999999999887779999999866543
No 234
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.02 E-value=2.2e-06 Score=82.51 Aligned_cols=148 Identities=11% Similarity=0.110 Sum_probs=69.1
Q ss_pred CCcEEEECCChHHHHHHHHHHhCC-CcEEEEccCCCCCCCCCC--CCcccccccCHHHHHHHHHCCChHHHHhCCCCcee
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQ-YEVNLYEAREDIRNSGLS--EGKSINLALSVRGREALRRIGLEDKLLAHGIPMRA 82 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G-~~V~viE~~~~~~~~~~~--~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~ 82 (379)
.+|+++||.||++|++|+.|...+ .+++.+|+++...-.+.. .|..++ ...|+.|-- +..-..+..-
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q-------~~fl~Dlvt---~~~P~s~~sf 71 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQ-------VSFLKDLVT---LRDPTSPFSF 71 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-S-------S-TTSSSST---TT-TTSTTSH
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccc-------cccccccCc---CcCCCCcccH
Confidence 479999999999999999999886 899999998865322100 011000 011111100 0000011111
Q ss_pred eEEEecCCcEEEe---eCCCCCcH------HHHhcCCCCeEEeCceEEEEEecCC----eEEEEEc-cCCceeEEEeecE
Q psy9141 83 RMIHGQNGKLREI---PYDPVHNQ------VELEQYPDCNIYFQHKLINLDVNSG----NVTFYRT-EDNSETKITDNQL 148 (379)
Q Consensus 83 ~~~~~~~g~~~~~---~~~~~~~~------~~~~~~~gv~i~~~~~v~~i~~~~~----~v~v~~~-~~G~~~~~i~adl 148 (379)
..+....++...+ .+..+... ..+++.-+-.++++++|++|+.+++ .++|++. .+|+..+ +.|+.
T Consensus 72 lnYL~~~~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~-~~ar~ 150 (341)
T PF13434_consen 72 LNYLHEHGRLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGET-YRARN 150 (341)
T ss_dssp HHHHHHTT-HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEE-EEESE
T ss_pred HHHHHHcCChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeE-EEeCe
Confidence 1111111211100 00111000 3444444555899999999987664 3677662 1565555 99999
Q ss_pred EEecCCCChHHHHHhh
Q psy9141 149 IIGADGAYSGVRKCLM 164 (379)
Q Consensus 149 VV~AdG~~S~vr~~l~ 164 (379)
||.|.|....+.+++.
T Consensus 151 vVla~G~~P~iP~~~~ 166 (341)
T PF13434_consen 151 VVLATGGQPRIPEWFQ 166 (341)
T ss_dssp EEE----EE---GGGG
T ss_pred EEECcCCCCCCCcchh
Confidence 9999997766776663
No 235
>KOG2852|consensus
Probab=98.01 E-value=1.7e-05 Score=72.42 Aligned_cols=39 Identities=28% Similarity=0.652 Sum_probs=34.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhCC------CcEEEEccCCCCCCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQ------YEVNLYEAREDIRNS 44 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G------~~V~viE~~~~~~~~ 44 (379)
..+|+|||||+.|.++|+.|++++ +.|+|+|+..-....
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~ga 54 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGA 54 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccccc
Confidence 468999999999999999999998 799999998766543
No 236
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.01 E-value=2.5e-05 Score=75.82 Aligned_cols=104 Identities=13% Similarity=0.153 Sum_probs=65.5
Q ss_pred cEEEECCChHHHHHHHHHHhC---CCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeE
Q psy9141 8 SVVIVGGGLVGSLSACMFAKN---QYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARM 84 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~---G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~ 84 (379)
+|||||||++|+.+|..|.++ +.+|+|||+.+..... +.. ..+..........
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~-------------~~~----------~~~~~g~~~~~~~- 56 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYS-------------GML----------PGMIAGHYSLDEI- 56 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCccc-------------chh----------hHHHheeCCHHHh-
Confidence 489999999999999999643 6899999987643211 100 0000000000000
Q ss_pred EEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141 85 IHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS 157 (379)
Q Consensus 85 ~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S 157 (379)
..+ .....+..+++++.+ +|++++.++.. +.+. +|++ +++|+||.|+|...
T Consensus 57 ---------~~~------~~~~~~~~gv~~~~~-~v~~id~~~~~--V~~~-~g~~---~~yD~LviAtG~~~ 107 (364)
T TIGR03169 57 ---------RID------LRRLARQAGARFVIA-EATGIDPDRRK--VLLA-NRPP---LSYDVLSLDVGSTT 107 (364)
T ss_pred ---------ccc------HHHHHHhcCCEEEEE-EEEEEecccCE--EEEC-CCCc---ccccEEEEccCCCC
Confidence 000 012223358888875 79999877664 4455 8877 99999999999765
No 237
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.98 E-value=5.1e-05 Score=73.58 Aligned_cols=47 Identities=15% Similarity=0.235 Sum_probs=39.8
Q ss_pred hcCCCCeEEeCceEEEEEecCCeEE-EEEccCCceeEEEeecEEEecCCCCh
Q psy9141 107 EQYPDCNIYFQHKLINLDVNSGNVT-FYRTEDNSETKITDNQLIIGADGAYS 157 (379)
Q Consensus 107 ~~~~gv~i~~~~~v~~i~~~~~~v~-v~~~~~G~~~~~i~adlVV~AdG~~S 157 (379)
.+..|++++++++|.+++..++.+. +.++ +|.+ +.+|.||.|-|+.+
T Consensus 183 l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~-~g~~---i~~~~vvlA~Grsg 230 (486)
T COG2509 183 LESLGGEIRFNTEVEDIEIEDNEVLGVKLT-KGEE---IEADYVVLAPGRSG 230 (486)
T ss_pred HHhcCcEEEeeeEEEEEEecCCceEEEEcc-CCcE---EecCEEEEccCcch
Confidence 3446899999999999999887544 6666 8887 99999999999987
No 238
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.98 E-value=7.9e-06 Score=82.77 Aligned_cols=36 Identities=36% Similarity=0.613 Sum_probs=33.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR 42 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~ 42 (379)
.||+|||||++||++|..|+++|++|+|+|+++.+.
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~G 37 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPG 37 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 489999999999999999999999999999998664
No 239
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.97 E-value=0.00011 Score=74.04 Aligned_cols=104 Identities=13% Similarity=0.198 Sum_probs=72.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI 85 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~ 85 (379)
..+|+|||||+.|+-+|..|++.|.+|+++|+.+..... +.+...+.+.
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~-----------~d~~~~~~l~-------------------- 222 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG-----------TDTETAKTLQ-------------------- 222 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC-----------CCHHHHHHHH--------------------
Confidence 358999999999999999999999999999987533210 1111111110
Q ss_pred EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEc--cCCceeEEEeecEEEecCCCChHHH
Q psy9141 86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRT--EDNSETKITDNQLIIGADGAYSGVR 160 (379)
Q Consensus 86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~--~~G~~~~~i~adlVV~AdG~~S~vr 160 (379)
..+. ..+++++++++|++++.+++++.+.+. .+|+..+ +++|.||.|.|+.+.+.
T Consensus 223 ------------------~~l~-~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~-i~~D~vi~a~G~~pn~~ 279 (466)
T PRK06115 223 ------------------KALT-KQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAET-LQADYVLVAIGRRPYTQ 279 (466)
T ss_pred ------------------HHHH-hcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeE-EEeCEEEEccCCccccc
Confidence 1122 248999999999999876666665432 1343334 99999999999987654
No 240
>PRK07846 mycothione reductase; Reviewed
Probab=97.97 E-value=2.2e-05 Score=78.70 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=27.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
+||++||||||+|..+|.. +.|.+|+|+|+..
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~ 32 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKGT 32 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC
Confidence 4899999999999988865 4699999999864
No 241
>PLN02576 protoporphyrinogen oxidase
Probab=97.96 E-value=8.8e-06 Score=82.46 Aligned_cols=38 Identities=34% Similarity=0.490 Sum_probs=34.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHhC-CCcEEEEccCCCCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKN-QYEVNLYEAREDIR 42 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~-G~~V~viE~~~~~~ 42 (379)
.++||+|||||++||++|+.|++. |++|+|+|+++...
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvG 49 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVG 49 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 357999999999999999999999 99999999998654
No 242
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.96 E-value=0.00012 Score=73.64 Aligned_cols=101 Identities=21% Similarity=0.303 Sum_probs=71.4
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH 86 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 86 (379)
.+++|||||++|+-+|..|++.|.+|+++|+.+..... ..+...+.+.
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~-----------~d~e~~~~l~--------------------- 218 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPG-----------EDEDIAHILR--------------------- 218 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcc-----------ccHHHHHHHH---------------------
Confidence 47999999999999999999999999999987533110 0011000000
Q ss_pred ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141 87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVR 160 (379)
Q Consensus 87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr 160 (379)
..+. ..|++++++++|++++.++..+.+.. +|+..+ +++|+||.|.|+.+.+.
T Consensus 219 -----------------~~L~-~~GI~i~~~~~V~~i~~~~~~v~~~~--~g~~~~-i~~D~vivA~G~~p~~~ 271 (458)
T PRK06912 219 -----------------EKLE-NDGVKIFTGAALKGLNSYKKQALFEY--EGSIQE-VNAEFVLVSVGRKPRVQ 271 (458)
T ss_pred -----------------HHHH-HCCCEEEECCEEEEEEEcCCEEEEEE--CCceEE-EEeCEEEEecCCccCCC
Confidence 1122 25899999999999987666665543 454334 89999999999988764
No 243
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.95 E-value=0.00011 Score=74.03 Aligned_cols=100 Identities=15% Similarity=0.230 Sum_probs=75.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH 86 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 86 (379)
.+++|||+|+.|+-+|..|++.|.+|+++|+.+..... ..+.....++
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~-----------~d~~~~~~l~--------------------- 225 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG-----------EDADAAEVLE--------------------- 225 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC-----------CCHHHHHHHH---------------------
Confidence 47999999999999999999999999999987643211 1111111110
Q ss_pred ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141 87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVR 160 (379)
Q Consensus 87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr 160 (379)
..+. ..|++++.++++++++.+++++.+.+. +|++ +++|.||.|.|+...+.
T Consensus 226 -----------------~~L~-~~gV~i~~~~~v~~v~~~~~~~~v~~~-~g~~---l~~D~vl~a~G~~pn~~ 277 (466)
T PRK07845 226 -----------------EVFA-RRGMTVLKRSRAESVERTGDGVVVTLT-DGRT---VEGSHALMAVGSVPNTA 277 (466)
T ss_pred -----------------HHHH-HCCcEEEcCCEEEEEEEeCCEEEEEEC-CCcE---EEecEEEEeecCCcCCC
Confidence 1122 258999999999999877778888887 8876 99999999999987654
No 244
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.95 E-value=6.2e-06 Score=81.45 Aligned_cols=145 Identities=21% Similarity=0.272 Sum_probs=79.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCC-ChHHHHhC-CCCce
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIG-LEDKLLAH-GIPMR 81 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lG-l~~~l~~~-~~~~~ 81 (379)
+..|||+|||||-||+-+|++.||.|.+++++--+..--.. .++.-+|.--=-..-.+.++.|| +....... +..++
T Consensus 2 ~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~-msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r 80 (621)
T COG0445 2 PKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGE-MSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFR 80 (621)
T ss_pred CCCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceee-cccccccCCcccceeEEeehhccchHHHhhhhcCCchh
Confidence 34699999999999999999999999999998766532111 00010000000001123344443 22222111 22211
Q ss_pred eeEEEec-CCcEEEee---CCCC-Cc---HHHHhcCCCCeEEeCceEEEEEecCC-eEE-EEEccCCceeEEEeecEEEe
Q psy9141 82 ARMIHGQ-NGKLREIP---YDPV-HN---QVELEQYPDCNIYFQHKLINLDVNSG-NVT-FYRTEDNSETKITDNQLIIG 151 (379)
Q Consensus 82 ~~~~~~~-~g~~~~~~---~~~~-~~---~~~~~~~~gv~i~~~~~v~~i~~~~~-~v~-v~~~~~G~~~~~i~adlVV~ 151 (379)
+.+. .|.-.+-+ .+.. +. +..+...+|..++.+ .|+++..+++ .+. |.+. +|.. +.|+.||.
T Consensus 81 ---~LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~-~G~~---~~a~aVVl 152 (621)
T COG0445 81 ---MLNSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTA-DGPE---FHAKAVVL 152 (621)
T ss_pred ---hccCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeC-CCCe---eecCEEEE
Confidence 1221 11111000 0000 00 145667789988765 5777766444 344 6777 8988 99999999
Q ss_pred cCCCCh
Q psy9141 152 ADGAYS 157 (379)
Q Consensus 152 AdG~~S 157 (379)
++|-+-
T Consensus 153 TTGTFL 158 (621)
T COG0445 153 TTGTFL 158 (621)
T ss_pred eecccc
Confidence 999873
No 245
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.93 E-value=0.00012 Score=73.91 Aligned_cols=103 Identities=15% Similarity=0.195 Sum_probs=73.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH 86 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 86 (379)
.+|+|||+|+.|+-+|..|++.|.+|+|+|+.+..... ..+.....+.
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-----------~d~~~~~~~~--------------------- 231 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA-----------ADEQVAKEAA--------------------- 231 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc-----------CCHHHHHHHH---------------------
Confidence 58999999999999999999999999999987633110 0111100000
Q ss_pred ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEcc-CCceeEEEeecEEEecCCCChHHH
Q psy9141 87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTE-DNSETKITDNQLIIGADGAYSGVR 160 (379)
Q Consensus 87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~-~G~~~~~i~adlVV~AdG~~S~vr 160 (379)
..+. ..|++++.+++|++++.+++++.+.+.+ +|++.+ +++|.||.|.|..+.+.
T Consensus 232 -----------------~~l~-~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~-i~~D~vl~a~G~~p~~~ 287 (475)
T PRK06327 232 -----------------KAFT-KQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQT-LEVDKLIVSIGRVPNTD 287 (475)
T ss_pred -----------------HHHH-HcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeE-EEcCEEEEccCCccCCC
Confidence 1111 2589999999999998877777766541 244345 99999999999988754
No 246
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.93 E-value=5.1e-05 Score=81.33 Aligned_cols=107 Identities=12% Similarity=0.181 Sum_probs=69.4
Q ss_pred CcEEEECCChHHHHHHHHHHhC----CCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCcee
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKN----QYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRA 82 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~----G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~ 82 (379)
.+|||||+|++|+.+|..|.+. +++|+||++.+...-. +. .++. .+.. ..++.
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~-----r~---~L~~----~~~~-~~~~~---------- 60 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYD-----RV---HLSS----YFSH-HTAEE---------- 60 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCccc-----CC---cchH----hHcC-CCHHH----------
Confidence 4899999999999999999764 5799999988765311 10 1110 0000 00000
Q ss_pred eEEEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141 83 RMIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG 158 (379)
Q Consensus 83 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~ 158 (379)
+. .. . ....+..+++++.+++|++++.+.. +|.+. +|++ +.+|.||.|+|....
T Consensus 61 l~------------~~-~---~~~~~~~gI~~~~g~~V~~Id~~~~--~V~~~-~G~~---i~yD~LVIATGs~p~ 114 (847)
T PRK14989 61 LS------------LV-R---EGFYEKHGIKVLVGERAITINRQEK--VIHSS-AGRT---VFYDKLIMATGSYPW 114 (847)
T ss_pred cc------------CC-C---HHHHHhCCCEEEcCCEEEEEeCCCc--EEEEC-CCcE---EECCEEEECCCCCcC
Confidence 00 00 0 1122236899999999999877543 34556 7877 999999999998754
No 247
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.92 E-value=1.2e-05 Score=78.10 Aligned_cols=36 Identities=33% Similarity=0.428 Sum_probs=33.1
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR 42 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~ 42 (379)
+||+|||||++|+++|..|++.|.+|+|+|+++...
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iG 37 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIG 37 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 599999999999999999999999999999976544
No 248
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.92 E-value=9.9e-05 Score=73.99 Aligned_cols=98 Identities=19% Similarity=0.304 Sum_probs=72.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH 86 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 86 (379)
.+++|||||+.|+-+|..|++.|.+|+++|+.+.... .+.+.....+
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~-----------~~d~~~~~~l---------------------- 216 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR-----------HLDEDISDRF---------------------- 216 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc-----------ccCHHHHHHH----------------------
Confidence 4799999999999999999999999999998653310 0111110000
Q ss_pred ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHH
Q psy9141 87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGV 159 (379)
Q Consensus 87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~v 159 (379)
....+ .+++++.+++|++++.+++++.+.+. +|++ +++|.||.|.|+...+
T Consensus 217 -----------------~~~~~-~gI~i~~~~~V~~i~~~~~~v~v~~~-~g~~---i~~D~vl~a~G~~pn~ 267 (452)
T TIGR03452 217 -----------------TEIAK-KKWDIRLGRNVTAVEQDGDGVTLTLD-DGST---VTADVLLVATGRVPNG 267 (452)
T ss_pred -----------------HHHHh-cCCEEEeCCEEEEEEEcCCeEEEEEc-CCCE---EEcCEEEEeeccCcCC
Confidence 11111 36889999999999887777878777 7876 9999999999988754
No 249
>PLN02268 probable polyamine oxidase
Probab=97.90 E-value=1.3e-05 Score=79.76 Aligned_cols=41 Identities=15% Similarity=0.078 Sum_probs=36.1
Q ss_pred CCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCC
Q psy9141 111 DCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGA 155 (379)
Q Consensus 111 gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~ 155 (379)
+++|++++.|++|+.++++++|++. +|++ +.||.||.|.-.
T Consensus 210 ~~~i~~~~~V~~i~~~~~~v~v~~~-~g~~---~~ad~VIva~P~ 250 (435)
T PLN02268 210 GLDIRLNHRVTKIVRRYNGVKVTVE-DGTT---FVADAAIIAVPL 250 (435)
T ss_pred cCceeCCCeeEEEEEcCCcEEEEEC-CCcE---EEcCEEEEecCH
Confidence 5679999999999999999999888 8877 899999999743
No 250
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=1.3e-05 Score=79.08 Aligned_cols=63 Identities=30% Similarity=0.482 Sum_probs=46.4
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCC----CCCCCccc----cc--ccCHHHHHHHHHCCCh
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNS----GLSEGKSI----NL--ALSVRGREALRRIGLE 70 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~----~~~~g~~i----~~--al~~~~~~~l~~lGl~ 70 (379)
+|+|+|||+|||++|+.|+.+|++|+|+|+++..... ...||+.+ |+ .-..+..++|.+++..
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~Y~n~~~ll~~~~~~ 74 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCYYNLLTLLKELPIE 74 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCCCeeeeeeEEechhHHHHHHHhhhCCch
Confidence 6999999999999999999999999999999976522 12344332 21 1234667777777654
No 251
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.87 E-value=1.5e-05 Score=85.94 Aligned_cols=36 Identities=22% Similarity=0.445 Sum_probs=33.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~ 41 (379)
.++|+||||||||+++|+.|++.|++|+|+|+.+.+
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~l 572 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKP 572 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccccc
Confidence 479999999999999999999999999999998754
No 252
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.87 E-value=0.00022 Score=71.62 Aligned_cols=101 Identities=15% Similarity=0.225 Sum_probs=70.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH 86 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 86 (379)
.+|+|||+|+.|+-+|..|++.|.+|+++|+.+..... +.+.....++
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-----------~d~~~~~~~~--------------------- 217 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL-----------EDPEVSKQAQ--------------------- 217 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-----------hhHHHHHHHH---------------------
Confidence 58999999999999999999999999999987533110 0111100000
Q ss_pred ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCC-eEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141 87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSG-NVTFYRTEDNSETKITDNQLIIGADGAYSGVR 160 (379)
Q Consensus 87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr 160 (379)
..+. .. +++++++++++++.+++ .++++.. +|+..+ +++|.||.|.|....+.
T Consensus 218 -----------------~~l~-~~-I~i~~~~~v~~i~~~~~~~v~~~~~-~~~~~~-i~~D~vi~a~G~~p~~~ 271 (460)
T PRK06292 218 -----------------KILS-KE-FKIKLGAKVTSVEKSGDEKVEELEK-GGKTET-IEADYVLVATGRRPNTD 271 (460)
T ss_pred -----------------HHHh-hc-cEEEcCCEEEEEEEcCCceEEEEEc-CCceEE-EEeCEEEEccCCccCCC
Confidence 1122 24 88999999999987654 5665544 554444 99999999999987655
No 253
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.86 E-value=0.00017 Score=72.63 Aligned_cols=101 Identities=13% Similarity=0.248 Sum_probs=71.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH 86 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 86 (379)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+..-.. +.+...+.+.
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~-----------~d~~~~~~~~--------------------- 222 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA-----------ADKDIVKVFT--------------------- 222 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc-----------CCHHHHHHHH---------------------
Confidence 48999999999999999999999999999987643210 1111111110
Q ss_pred ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccC--CceeEEEeecEEEecCCCChHHH
Q psy9141 87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTED--NSETKITDNQLIIGADGAYSGVR 160 (379)
Q Consensus 87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~--G~~~~~i~adlVV~AdG~~S~vr 160 (379)
..+.+ . ++++.+++|++++.+++++.+.+. + |+..+ +++|.||.|.|+.+.+.
T Consensus 223 -----------------~~l~~-~-v~i~~~~~v~~i~~~~~~~~v~~~-~~~~~~~~-i~~D~vi~a~G~~pn~~ 277 (471)
T PRK06467 223 -----------------KRIKK-Q-FNIMLETKVTAVEAKEDGIYVTME-GKKAPAEP-QRYDAVLVAVGRVPNGK 277 (471)
T ss_pred -----------------HHHhh-c-eEEEcCCEEEEEEEcCCEEEEEEE-eCCCcceE-EEeCEEEEeecccccCC
Confidence 11111 2 677888889998877777777654 3 32334 99999999999998765
No 254
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.85 E-value=0.00013 Score=78.05 Aligned_cols=100 Identities=17% Similarity=0.209 Sum_probs=71.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH 86 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 86 (379)
.+|+|||||++|+-+|..|++.|.+|+|+|+.+..-. + .+.+.....+
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~------~----~ld~~~~~~l---------------------- 188 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMA------K----QLDQTAGRLL---------------------- 188 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhh------h----hcCHHHHHHH----------------------
Confidence 4799999999999999999999999999997653211 0 0111111111
Q ss_pred ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHH
Q psy9141 87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGV 159 (379)
Q Consensus 87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~v 159 (379)
....+..|+++++++.++++..++....+.+. ||++ +.+|+||.|.|.....
T Consensus 189 -----------------~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~-dG~~---i~~D~Vi~a~G~~Pn~ 240 (785)
T TIGR02374 189 -----------------QRELEQKGLTFLLEKDTVEIVGATKADRIRFK-DGSS---LEADLIVMAAGIRPND 240 (785)
T ss_pred -----------------HHHHHHcCCEEEeCCceEEEEcCCceEEEEEC-CCCE---EEcCEEEECCCCCcCc
Confidence 11112258889999999888765555567778 8887 9999999999987543
No 255
>KOG0685|consensus
Probab=97.83 E-value=6e-05 Score=73.44 Aligned_cols=37 Identities=30% Similarity=0.562 Sum_probs=32.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCCCCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEAREDIR 42 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~~~ 42 (379)
...|+|||||+|||++|..|-+.|+ +|+|+|..+...
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIG 58 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIG 58 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccC
Confidence 4589999999999999999997765 899999987654
No 256
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.83 E-value=8.1e-05 Score=79.57 Aligned_cols=106 Identities=17% Similarity=0.272 Sum_probs=67.7
Q ss_pred EEEECCChHHHHHHHHHHhC---CCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141 9 VVIVGGGLVGSLSACMFAKN---QYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI 85 (379)
Q Consensus 9 VvIVGaGpaGl~~A~~La~~---G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~ 85 (379)
|||||||+||+.+|..|.+. +++|+|||+.+.... .+. .++. ++. |- .....+.
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y-----~r~---~L~~----~l~--g~--------~~~~~l~- 57 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNY-----NRI---LLSS----VLQ--GE--------ADLDDIT- 57 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCc-----ccc---cccH----HHC--CC--------CCHHHcc-
Confidence 69999999999999988775 579999998875521 110 0100 110 00 0000000
Q ss_pred EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141 86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG 158 (379)
Q Consensus 86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~ 158 (379)
... ....+..+++++.+++|++++.+... +.+. +|++ +.+|.||.|+|....
T Consensus 58 -----------~~~----~~~~~~~gv~~~~g~~V~~Id~~~k~--V~~~-~g~~---~~yD~LVlATGs~p~ 109 (785)
T TIGR02374 58 -----------LNS----KDWYEKHGITLYTGETVIQIDTDQKQ--VITD-AGRT---LSYDKLILATGSYPF 109 (785)
T ss_pred -----------CCC----HHHHHHCCCEEEcCCeEEEEECCCCE--EEEC-CCcE---eeCCEEEECCCCCcC
Confidence 000 11122358999999999999876543 4556 7877 999999999998753
No 257
>KOG2665|consensus
Probab=97.83 E-value=2.5e-05 Score=72.12 Aligned_cols=38 Identities=29% Similarity=0.508 Sum_probs=34.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDIR 42 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~~ 42 (379)
.+||+||||||++||+.|++|.-+ +.+|.|+|+.....
T Consensus 47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la 86 (453)
T KOG2665|consen 47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA 86 (453)
T ss_pred ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence 479999999999999999998866 99999999998665
No 258
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.82 E-value=2e-05 Score=85.25 Aligned_cols=37 Identities=30% Similarity=0.574 Sum_probs=34.1
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR 42 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~ 42 (379)
..+|+|||||||||++|..|++.|++|+|+|+.+.+.
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~G 342 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLG 342 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCC
Confidence 4789999999999999999999999999999987553
No 259
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.81 E-value=1.8e-05 Score=74.50 Aligned_cols=35 Identities=29% Similarity=0.336 Sum_probs=30.5
Q ss_pred CcEEEECCChHHHHHHHHHHhCC-CcEEEEccCCCC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQ-YEVNLYEAREDI 41 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G-~~V~viE~~~~~ 41 (379)
||+||||+|++|+.+|..|++.| .+|+|+|+.+..
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~ 36 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRY 36 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSC
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccC
Confidence 79999999999999999999997 699999999753
No 260
>PRK12831 putative oxidoreductase; Provisional
Probab=97.80 E-value=2.5e-05 Score=78.49 Aligned_cols=36 Identities=33% Similarity=0.510 Sum_probs=33.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~ 41 (379)
..||+||||||+|+++|..|++.|++|+|+|+.+.+
T Consensus 140 ~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~ 175 (464)
T PRK12831 140 GKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEP 175 (464)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 579999999999999999999999999999987654
No 261
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.80 E-value=2e-05 Score=79.96 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=31.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAR 38 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~ 38 (379)
.|||+||||||+|+.+|..|++.|.+|+|||+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 589999999999999999999999999999973
No 262
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.78 E-value=6.6e-05 Score=73.57 Aligned_cols=36 Identities=28% Similarity=0.494 Sum_probs=30.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCC---CcEEEEccCCCCC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQ---YEVNLYEAREDIR 42 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G---~~V~viE~~~~~~ 42 (379)
++|+|||+|++|+++|.+|.++- .+|.|+|+.+...
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G 40 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFG 40 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccC
Confidence 48999999999999999998861 2399999998664
No 263
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.77 E-value=3.1e-05 Score=77.78 Aligned_cols=37 Identities=24% Similarity=0.246 Sum_probs=33.8
Q ss_pred CCcEEEECCChHHHHHHHHHHh--CCCcEEEEccCCCCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAK--NQYEVNLYEAREDIR 42 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~--~G~~V~viE~~~~~~ 42 (379)
..+|+||||||||+.+|..|++ .|++|+|+|+.+.+.
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg 64 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF 64 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence 4689999999999999999987 799999999998764
No 264
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.76 E-value=0.00023 Score=76.37 Aligned_cols=100 Identities=21% Similarity=0.245 Sum_probs=71.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH 86 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 86 (379)
..++|||||+.|+-+|..|++.|.+|+|+|+.+..-. + .+.+...+.++
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~------~----~ld~~~~~~l~--------------------- 194 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA------E----QLDQMGGEQLR--------------------- 194 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh------h----hcCHHHHHHHH---------------------
Confidence 4799999999999999999999999999998753211 0 11222211111
Q ss_pred ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecC--CeEEEEEccCCceeEEEeecEEEecCCCChHH
Q psy9141 87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNS--GNVTFYRTEDNSETKITDNQLIIGADGAYSGV 159 (379)
Q Consensus 87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~--~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~v 159 (379)
..+ +..|+++++++.++++..++ ....+.+. +|++ +.+|+||.|.|.....
T Consensus 195 -----------------~~L-~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~-dG~~---i~~D~Vv~A~G~rPn~ 247 (847)
T PRK14989 195 -----------------RKI-ESMGVRVHTSKNTLEIVQEGVEARKTMRFA-DGSE---LEVDFIVFSTGIRPQD 247 (847)
T ss_pred -----------------HHH-HHCCCEEEcCCeEEEEEecCCCceEEEEEC-CCCE---EEcCEEEECCCcccCc
Confidence 112 22588999999999997643 23456777 8987 9999999999988754
No 265
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.75 E-value=0.00034 Score=69.54 Aligned_cols=98 Identities=20% Similarity=0.236 Sum_probs=68.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH 86 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 86 (379)
.+|+|||||++|+-+|..|++.|.+|+++++.+..... .+.+.....+
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~----------~~~~~~~~~~---------------------- 185 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNK----------LFDEEMNQIV---------------------- 185 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCcc----------ccCHHHHHHH----------------------
Confidence 57999999999999999999999999999987533100 0111110000
Q ss_pred ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHH
Q psy9141 87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGV 159 (379)
Q Consensus 87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~v 159 (379)
....+..|++++++++|++++.++. + +.+. +|++ +.+|.||.|.|.....
T Consensus 186 -----------------~~~l~~~gV~v~~~~~v~~i~~~~~-~-v~~~-~g~~---i~~D~vi~a~G~~p~~ 235 (427)
T TIGR03385 186 -----------------EEELKKHEINLRLNEEVDSIEGEER-V-KVFT-SGGV---YQADMVILATGIKPNS 235 (427)
T ss_pred -----------------HHHHHHcCCEEEeCCEEEEEecCCC-E-EEEc-CCCE---EEeCEEEECCCccCCH
Confidence 1111225889999999999976543 3 4555 7877 9999999999988654
No 266
>PLN02676 polyamine oxidase
Probab=97.74 E-value=4e-05 Score=77.43 Aligned_cols=43 Identities=14% Similarity=0.101 Sum_probs=38.3
Q ss_pred CCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141 111 DCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS 157 (379)
Q Consensus 111 gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S 157 (379)
+.+|+++++|++|+.++++|+|++. +|++ ++||.||.|.....
T Consensus 244 ~~~I~l~~~V~~I~~~~~gV~V~~~-~G~~---~~a~~VIvtvPl~v 286 (487)
T PLN02676 244 DPRLKLNKVVREISYSKNGVTVKTE-DGSV---YRAKYVIVSVSLGV 286 (487)
T ss_pred CCceecCCEeeEEEEcCCcEEEEEC-CCCE---EEeCEEEEccChHH
Confidence 3679999999999999999999998 8987 99999999997554
No 267
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.71 E-value=0.00042 Score=69.21 Aligned_cols=98 Identities=15% Similarity=0.183 Sum_probs=66.5
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH 86 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 86 (379)
.+|+|||||++|+-+|..|++.|.+|+++++.+..-.. .+.+...+.+
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~----------~~~~~~~~~l---------------------- 197 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPD----------SFDKEITDVM---------------------- 197 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCch----------hcCHHHHHHH----------------------
Confidence 57999999999999999999999999999876532100 0111111000
Q ss_pred ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141 87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG 158 (379)
Q Consensus 87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~ 158 (379)
....+..++++++++++++++.+++...+.+ ++.+ +.+|+||.|.|....
T Consensus 198 -----------------~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~--~~~~---i~~d~vi~a~G~~p~ 247 (444)
T PRK09564 198 -----------------EEELRENGVELHLNEFVKSLIGEDKVEGVVT--DKGE---YEADVVIVATGVKPN 247 (444)
T ss_pred -----------------HHHHHHCCCEEEcCCEEEEEecCCcEEEEEe--CCCE---EEcCEEEECcCCCcC
Confidence 1112235789999999999965443333444 4445 899999999998754
No 268
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.70 E-value=4.5e-05 Score=76.40 Aligned_cols=37 Identities=30% Similarity=0.431 Sum_probs=34.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~ 41 (379)
+.++|+||||||+|+++|..|++.|++|+|+|+.+.+
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~ 168 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKP 168 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 4579999999999999999999999999999998654
No 269
>PRK02106 choline dehydrogenase; Validated
Probab=97.70 E-value=4.2e-05 Score=78.79 Aligned_cols=38 Identities=26% Similarity=0.363 Sum_probs=34.4
Q ss_pred CCCCCCCcEEEECCChHHHHHHHHHHh-CCCcEEEEccCC
Q psy9141 1 MKCNSKKSVVIVGGGLVGSLSACMFAK-NQYEVNLYEARE 39 (379)
Q Consensus 1 M~~m~~~dVvIVGaGpaGl~~A~~La~-~G~~V~viE~~~ 39 (379)
|+ ..+||+||||+|++|+.+|..|++ .|++|+|||+.+
T Consensus 1 ~~-~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 1 MT-TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CC-CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 44 346999999999999999999999 799999999995
No 270
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.70 E-value=0.00044 Score=70.23 Aligned_cols=99 Identities=13% Similarity=0.163 Sum_probs=72.1
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH 86 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 86 (379)
.+++|||||+.|+-+|..|++.|.+|+|+++..... .+.+...+.++
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~------------~~d~~~~~~l~--------------------- 229 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLR------------GFDRQCSEKVV--------------------- 229 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccc------------cCCHHHHHHHH---------------------
Confidence 479999999999999999999999999998642110 01121111110
Q ss_pred ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141 87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVR 160 (379)
Q Consensus 87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr 160 (379)
..+. ..+++++.++.+++++..++.+.+.+. +|++ +.+|.||.|.|+.+.+.
T Consensus 230 -----------------~~l~-~~GV~i~~~~~v~~v~~~~~~~~v~~~-~g~~---i~~D~vl~a~G~~pn~~ 281 (499)
T PTZ00052 230 -----------------EYMK-EQGTLFLEGVVPINIEKMDDKIKVLFS-DGTT---ELFDTVLYATGRKPDIK 281 (499)
T ss_pred -----------------HHHH-HcCCEEEcCCeEEEEEEcCCeEEEEEC-CCCE---EEcCEEEEeeCCCCCcc
Confidence 1111 247889999988888876666777777 8887 89999999999998765
No 271
>PRK14694 putative mercuric reductase; Provisional
Probab=97.69 E-value=0.00053 Score=69.07 Aligned_cols=98 Identities=13% Similarity=0.134 Sum_probs=69.9
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH 86 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 86 (379)
.+|+|||+|++|+-+|..|++.|.+|+++++...... ..+.....+
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~~------------~~~~~~~~l---------------------- 224 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQ------------EDPAVGEAI---------------------- 224 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCC------------CCHHHHHHH----------------------
Confidence 4799999999999999999999999999986421100 011110000
Q ss_pred ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141 87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVR 160 (379)
Q Consensus 87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr 160 (379)
....+..|++++.++++++++.+++.+.+.+. ++ + +++|.||.|.|+.+.+.
T Consensus 225 -----------------~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~-~~-~---i~~D~vi~a~G~~pn~~ 276 (468)
T PRK14694 225 -----------------EAAFRREGIEVLKQTQASEVDYNGREFILETN-AG-T---LRAEQLLVATGRTPNTE 276 (468)
T ss_pred -----------------HHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEC-CC-E---EEeCEEEEccCCCCCcC
Confidence 11122358999999999999877766666654 44 4 89999999999988654
No 272
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.68 E-value=4.8e-05 Score=79.77 Aligned_cols=37 Identities=32% Similarity=0.541 Sum_probs=33.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR 42 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~ 42 (379)
..+|+||||||+||++|..|++.|++|+|+|+.+...
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~G 363 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIG 363 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 5699999999999999999999999999999987553
No 273
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.68 E-value=4.6e-05 Score=81.99 Aligned_cols=36 Identities=28% Similarity=0.532 Sum_probs=33.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~ 41 (379)
..+|+||||||||+++|+.|++.|++|+|+|+.+.+
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~ 574 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENA 574 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc
Confidence 468999999999999999999999999999998755
No 274
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.68 E-value=4.7e-05 Score=74.16 Aligned_cols=36 Identities=36% Similarity=0.570 Sum_probs=34.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR 42 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~ 42 (379)
-+++|||||++|+.+|+.|++.|++|.++||.+...
T Consensus 125 ~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiG 160 (622)
T COG1148 125 KSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIG 160 (622)
T ss_pred cceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCccc
Confidence 489999999999999999999999999999998775
No 275
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.67 E-value=0.00047 Score=69.66 Aligned_cols=100 Identities=19% Similarity=0.218 Sum_probs=70.1
Q ss_pred CcEEEECCChHHHHHHHHHHh---CCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141 7 KSVVIVGGGLVGSLSACMFAK---NQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRAR 83 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~---~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~ 83 (379)
.+++|||||+.|+-+|..++. .|.+|+|+|+.+..... +.+...+.+.
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~-----------~d~~~~~~l~------------------ 238 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRG-----------FDSTLRKELT------------------ 238 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccc-----------cCHHHHHHHH------------------
Confidence 579999999999999976654 49999999987643210 1111111100
Q ss_pred EEEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCe-EEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141 84 MIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGN-VTFYRTEDNSETKITDNQLIIGADGAYSGVR 160 (379)
Q Consensus 84 ~~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr 160 (379)
..+. ..|+++++++.+++++.++++ ..+.+. +|++ +++|.||.|.|+...+.
T Consensus 239 --------------------~~L~-~~GI~i~~~~~v~~i~~~~~~~~~v~~~-~g~~---i~~D~vl~a~G~~Pn~~ 291 (486)
T TIGR01423 239 --------------------KQLR-ANGINIMTNENPAKVTLNADGSKHVTFE-SGKT---LDVDVVMMAIGRVPRTQ 291 (486)
T ss_pred --------------------HHHH-HcCCEEEcCCEEEEEEEcCCceEEEEEc-CCCE---EEcCEEEEeeCCCcCcc
Confidence 1122 257889999999999865443 566776 7776 99999999999987664
No 276
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=97.67 E-value=8.4e-05 Score=72.82 Aligned_cols=48 Identities=15% Similarity=0.133 Sum_probs=39.9
Q ss_pred CCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141 109 YPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVR 160 (379)
Q Consensus 109 ~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr 160 (379)
..+.+|+++++|++|+.+++++++.+. +|++ ++||.||.|.......+
T Consensus 221 ~~g~~i~l~~~V~~I~~~~~~v~v~~~-~g~~---~~ad~VI~a~p~~~l~~ 268 (450)
T PF01593_consen 221 ELGGEIRLNTPVTRIEREDGGVTVTTE-DGET---IEADAVISAVPPSVLKN 268 (450)
T ss_dssp HHGGGEESSEEEEEEEEESSEEEEEET-TSSE---EEESEEEE-S-HHHHHT
T ss_pred hcCceeecCCcceeccccccccccccc-cceE---EecceeeecCchhhhhh
Confidence 345689999999999999999999999 9987 99999999987766554
No 277
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.67 E-value=6.3e-05 Score=74.89 Aligned_cols=38 Identities=16% Similarity=0.224 Sum_probs=33.3
Q ss_pred CCCcEEEECCChHHHHHHHHH-HhCCCcEEEEccCCCCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMF-AKNQYEVNLYEAREDIR 42 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~L-a~~G~~V~viE~~~~~~ 42 (379)
....|+||||||+|+.+|..| ++.|++|+|+|+.+.+.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg 76 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY 76 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 356899999999999999976 56799999999999775
No 278
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.67 E-value=5.1e-05 Score=74.95 Aligned_cols=34 Identities=32% Similarity=0.440 Sum_probs=32.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
++||+|||+|++|+++|+.|+++|.+|+|||+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 4899999999999999999999999999999874
No 279
>PRK14727 putative mercuric reductase; Provisional
Probab=97.66 E-value=0.00058 Score=69.02 Aligned_cols=98 Identities=10% Similarity=0.099 Sum_probs=70.9
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH 86 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 86 (379)
.+|+|||+|+.|+-+|..|++.|.+|+++++..... . +.+...+.+
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~-------~-----~d~~~~~~l---------------------- 234 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLF-------R-----EDPLLGETL---------------------- 234 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCC-------c-----chHHHHHHH----------------------
Confidence 479999999999999999999999999998642110 0 111100000
Q ss_pred ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141 87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVR 160 (379)
Q Consensus 87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr 160 (379)
....+..|++++++++|++++.+++.+.+... ++ + +.+|.||.|.|+.+.+.
T Consensus 235 -----------------~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~-~g-~---i~aD~VlvA~G~~pn~~ 286 (479)
T PRK14727 235 -----------------TACFEKEGIEVLNNTQASLVEHDDNGFVLTTG-HG-E---LRAEKLLISTGRHANTH 286 (479)
T ss_pred -----------------HHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEc-CC-e---EEeCEEEEccCCCCCcc
Confidence 11112358999999999999877777777665 55 3 88999999999998664
No 280
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.66 E-value=6.4e-05 Score=69.78 Aligned_cols=37 Identities=32% Similarity=0.373 Sum_probs=34.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRN 43 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~ 43 (379)
+|++|||||.+|+.+|..|++.|.+|.|+||++..+.
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGG 38 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGG 38 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCC
Confidence 6999999999999999999999999999999997764
No 281
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.65 E-value=4.7e-05 Score=81.14 Aligned_cols=34 Identities=12% Similarity=0.203 Sum_probs=31.7
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
..+|+||||||||+++|+.|++.|++|+|+|+.+
T Consensus 383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 4689999999999999999999999999999853
No 282
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.65 E-value=5.2e-05 Score=82.80 Aligned_cols=37 Identities=30% Similarity=0.375 Sum_probs=33.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR 42 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~ 42 (379)
..+|+|||||||||++|..|++.|++|+|+|+.+.+.
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~G 466 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVG 466 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCc
Confidence 4699999999999999999999999999999987553
No 283
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.65 E-value=0.00051 Score=68.57 Aligned_cols=95 Identities=8% Similarity=0.123 Sum_probs=67.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH 86 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 86 (379)
-+|+|||||++|+-+|..|++.|.+|+++|+.+.... .+.+...+.+
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~-----------~~d~~~~~~l---------------------- 195 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK-----------LMDADMNQPI---------------------- 195 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch-----------hcCHHHHHHH----------------------
Confidence 4799999999999999999999999999998763311 0111110000
Q ss_pred ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHH
Q psy9141 87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGV 159 (379)
Q Consensus 87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~v 159 (379)
....+..|++++++++|++++. . .+++. +|++ +++|.||.|.|+...+
T Consensus 196 -----------------~~~l~~~gI~i~~~~~v~~i~~--~--~v~~~-~g~~---~~~D~vl~a~G~~pn~ 243 (438)
T PRK13512 196 -----------------LDELDKREIPYRLNEEIDAING--N--EVTFK-SGKV---EHYDMIIEGVGTHPNS 243 (438)
T ss_pred -----------------HHHHHhcCCEEEECCeEEEEeC--C--EEEEC-CCCE---EEeCEEEECcCCCcCh
Confidence 1111235889999999999863 2 35556 7876 8999999999988654
No 284
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.64 E-value=7.3e-05 Score=75.32 Aligned_cols=37 Identities=30% Similarity=0.448 Sum_probs=34.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR 42 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~ 42 (379)
..+|+||||||+|+++|..|++.|++|+|+|+.+...
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~G 179 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIG 179 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 4699999999999999999999999999999987553
No 285
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.63 E-value=0.00012 Score=73.65 Aligned_cols=36 Identities=25% Similarity=0.479 Sum_probs=33.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~ 41 (379)
..+|+||||||+|+++|..|++.|++|+|+|+.+..
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~ 176 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEI 176 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 468999999999999999999999999999998755
No 286
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.62 E-value=6.4e-05 Score=80.10 Aligned_cols=36 Identities=36% Similarity=0.551 Sum_probs=33.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~ 41 (379)
..+|+||||||||+++|..|++.|++|+|+|+.+.+
T Consensus 431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~ 466 (752)
T PRK12778 431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEI 466 (752)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 569999999999999999999999999999987644
No 287
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.61 E-value=0.00055 Score=67.05 Aligned_cols=99 Identities=25% Similarity=0.322 Sum_probs=71.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH 86 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 86 (379)
.+++|||+|++|+.+|..|+++|++|+++|+.+..... . +.+...+.+
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~------~----~~~~~~~~~---------------------- 184 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQ------L----LDPEVAEEL---------------------- 184 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchh------h----hhHHHHHHH----------------------
Confidence 58999999999999999999999999999998765321 0 001111111
Q ss_pred ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEE---EEEccCCceeEEEeecEEEecCCCChH
Q psy9141 87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVT---FYRTEDNSETKITDNQLIIGADGAYSG 158 (379)
Q Consensus 87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~---v~~~~~G~~~~~i~adlVV~AdG~~S~ 158 (379)
....+..+++++++.++++++...+... +... ++.. +.+|+++.+.|....
T Consensus 185 -----------------~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~---~~~d~~~~~~g~~p~ 238 (415)
T COG0446 185 -----------------AELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGI-DGEE---IKADLVIIGPGERPN 238 (415)
T ss_pred -----------------HHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEe-CCcE---EEeeEEEEeeccccc
Confidence 1111224688889999999988776544 4555 7776 999999999998764
No 288
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.61 E-value=0.00044 Score=67.42 Aligned_cols=107 Identities=21% Similarity=0.272 Sum_probs=68.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhCC--CcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQ--YEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRAR 83 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G--~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~ 83 (379)
...|||||||.+|+.+|..|.++. .+|++||+++..... |. ..++.......
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~-------------pl----------L~eva~g~l~~--- 56 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFT-------------PL----------LYEVATGTLSE--- 56 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccc-------------hh----------hhhhhcCCCCh---
Confidence 358999999999999999999985 899999998744221 10 01111000000
Q ss_pred EEEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141 84 MIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS 157 (379)
Q Consensus 84 ~~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S 157 (379)
+. ...++. .......++++..+ +|++|+.++..|++. ++.. +..|++|.|.|..+
T Consensus 57 ------~~-i~~p~~-----~~~~~~~~v~~~~~-~V~~ID~~~k~V~~~---~~~~---i~YD~LVvalGs~~ 111 (405)
T COG1252 57 ------SE-IAIPLR-----ALLRKSGNVQFVQG-EVTDIDRDAKKVTLA---DLGE---ISYDYLVVALGSET 111 (405)
T ss_pred ------hh-eeccHH-----HHhcccCceEEEEE-EEEEEcccCCEEEeC---CCcc---ccccEEEEecCCcC
Confidence 00 111111 22332345777765 799999988887665 5455 99999999999875
No 289
>PTZ00058 glutathione reductase; Provisional
Probab=97.60 E-value=0.00078 Score=69.17 Aligned_cols=101 Identities=14% Similarity=0.177 Sum_probs=70.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI 85 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~ 85 (379)
..+|+|||||+.|+-+|..|++.|.+|+++|+.+.... .+.+...+.+.
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~-----------~~d~~i~~~l~-------------------- 285 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLR-----------KFDETIINELE-------------------- 285 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccc-----------cCCHHHHHHHH--------------------
Confidence 35799999999999999999999999999998763311 01111111110
Q ss_pred EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCC-eEEEEEccCC-ceeEEEeecEEEecCCCChHHH
Q psy9141 86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSG-NVTFYRTEDN-SETKITDNQLIIGADGAYSGVR 160 (379)
Q Consensus 86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~v~v~~~~~G-~~~~~i~adlVV~AdG~~S~vr 160 (379)
..+. ..|+++++++++++++.+++ ++.+... ++ ++ +++|.||.|.|+...+.
T Consensus 286 ------------------~~L~-~~GV~i~~~~~V~~I~~~~~~~v~v~~~-~~~~~---i~aD~VlvA~Gr~Pn~~ 339 (561)
T PTZ00058 286 ------------------NDMK-KNNINIITHANVEEIEKVKEKNLTIYLS-DGRKY---EHFDYVIYCVGRSPNTE 339 (561)
T ss_pred ------------------HHHH-HCCCEEEeCCEEEEEEecCCCcEEEEEC-CCCEE---EECCEEEECcCCCCCcc
Confidence 1111 25888999999999986543 4665554 44 34 99999999999987654
No 290
>PRK13748 putative mercuric reductase; Provisional
Probab=97.59 E-value=0.0007 Score=69.79 Aligned_cols=98 Identities=13% Similarity=0.118 Sum_probs=70.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH 86 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 86 (379)
.+|+|||||+.|+-+|..|++.|.+|+|+++..... . ..+...+.+
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~-------~-----~d~~~~~~l---------------------- 316 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARSTLFF-------R-----EDPAIGEAV---------------------- 316 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcccc-------c-----cCHHHHHHH----------------------
Confidence 479999999999999999999999999999753110 0 011111100
Q ss_pred ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141 87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVR 160 (379)
Q Consensus 87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr 160 (379)
....+..|+++++++++++++.+++.+.+.+. ++ + +.+|.||.|.|+...+.
T Consensus 317 -----------------~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~-~~-~---i~~D~vi~a~G~~pn~~ 368 (561)
T PRK13748 317 -----------------TAAFRAEGIEVLEHTQASQVAHVDGEFVLTTG-HG-E---LRADKLLVATGRAPNTR 368 (561)
T ss_pred -----------------HHHHHHCCCEEEcCCEEEEEEecCCEEEEEec-CC-e---EEeCEEEEccCCCcCCC
Confidence 11112258899999999999877777777665 54 4 89999999999987664
No 291
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.59 E-value=0.00077 Score=68.16 Aligned_cols=101 Identities=16% Similarity=0.135 Sum_probs=70.4
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH 86 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 86 (379)
-+++|||||+.|+-+|..|++.|.+|+|+++..... .+.+.....++
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~------------~~d~~~~~~l~--------------------- 227 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLR------------GFDQDCANKVG--------------------- 227 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEeccccc------------ccCHHHHHHHH---------------------
Confidence 479999999999999999999999999998642110 01111111100
Q ss_pred ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCc-eeEEEeecEEEecCCCChHHH
Q psy9141 87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNS-ETKITDNQLIIGADGAYSGVR 160 (379)
Q Consensus 87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~-~~~~i~adlVV~AdG~~S~vr 160 (379)
..+. ..|+++++++.+++++..++.+.+++. +|+ ..+ +++|.||.|.|+...+.
T Consensus 228 -----------------~~L~-~~gV~i~~~~~v~~v~~~~~~~~v~~~-~~~~~~~-i~~D~vl~a~G~~pn~~ 282 (484)
T TIGR01438 228 -----------------EHME-EHGVKFKRQFVPIKVEQIEAKVKVTFT-DSTNGIE-EEYDTVLLAIGRDACTR 282 (484)
T ss_pred -----------------HHHH-HcCCEEEeCceEEEEEEcCCeEEEEEe-cCCcceE-EEeCEEEEEecCCcCCC
Confidence 1122 248889999988888876666667666 553 123 99999999999987654
No 292
>PLN02529 lysine-specific histone demethylase 1
Probab=97.58 E-value=8.2e-05 Score=78.08 Aligned_cols=37 Identities=32% Similarity=0.469 Sum_probs=34.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~ 41 (379)
...||+|||||++|+++|..|+++|++|+|+|+++..
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~ 195 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRP 195 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccC
Confidence 4579999999999999999999999999999998743
No 293
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.56 E-value=9e-05 Score=74.38 Aligned_cols=36 Identities=33% Similarity=0.643 Sum_probs=33.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~ 41 (379)
..+|+||||||+|+++|..|++.|++|+|+|+.+..
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~ 175 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA 175 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence 468999999999999999999999999999998754
No 294
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.54 E-value=0.00017 Score=75.47 Aligned_cols=37 Identities=22% Similarity=0.463 Sum_probs=34.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR 42 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~ 42 (379)
..+|+||||||+|+++|..|++.|++|+|+|+.+...
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~G 346 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIG 346 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence 5789999999999999999999999999999998653
No 295
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.54 E-value=0.00011 Score=68.49 Aligned_cols=38 Identities=24% Similarity=0.401 Sum_probs=35.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~ 41 (379)
+.++||+|||||.+||.+|..|+.+|.+|+|+|+..+.
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeq 40 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQ 40 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCceEEEEcccccc
Confidence 55789999999999999999999999999999988754
No 296
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.52 E-value=0.00093 Score=69.73 Aligned_cols=104 Identities=16% Similarity=0.143 Sum_probs=69.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH 86 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 86 (379)
-+|+|||||++|+-+|..|++.|.+|+++|+.+..... +.+...+.+.
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~-----------~d~eis~~l~--------------------- 360 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPL-----------LDADVAKYFE--------------------- 360 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccc-----------CCHHHHHHHH---------------------
Confidence 47999999999999999999999999999987643210 1111111110
Q ss_pred ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCe--EEEEEcc------CC------ceeEEEeecEEEec
Q psy9141 87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGN--VTFYRTE------DN------SETKITDNQLIIGA 152 (379)
Q Consensus 87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~--v~v~~~~------~G------~~~~~i~adlVV~A 152 (379)
....+..+++++.++.|++++.+++. +++.+.+ ++ +..+ +++|.||.|
T Consensus 361 -----------------~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~-i~aD~VlvA 422 (659)
T PTZ00153 361 -----------------RVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKE-TYVDSCLVA 422 (659)
T ss_pred -----------------HHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceE-EEcCEEEEE
Confidence 11112357899999999999866543 5554420 11 1124 999999999
Q ss_pred CCCChHHH
Q psy9141 153 DGAYSGVR 160 (379)
Q Consensus 153 dG~~S~vr 160 (379)
.|+...+.
T Consensus 423 tGr~Pnt~ 430 (659)
T PTZ00153 423 TGRKPNTN 430 (659)
T ss_pred ECcccCCc
Confidence 99987654
No 297
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.52 E-value=0.00011 Score=68.48 Aligned_cols=34 Identities=21% Similarity=0.362 Sum_probs=32.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
++||+|||||+||++||+.|+++|.++.||-+..
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ 35 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ 35 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 4899999999999999999999999999998775
No 298
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.51 E-value=0.00011 Score=77.52 Aligned_cols=38 Identities=29% Similarity=0.437 Sum_probs=34.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR 42 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~ 42 (379)
...+|+|||||++|+++|+.|++.|++|+|+|++..+.
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~G 274 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPG 274 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCC
Confidence 35799999999999999999999999999999987553
No 299
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.49 E-value=0.0006 Score=66.69 Aligned_cols=47 Identities=13% Similarity=0.278 Sum_probs=41.3
Q ss_pred hcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141 107 EQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG 158 (379)
Q Consensus 107 ~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~ 158 (379)
... |++++++++|++++.+++++.+++. +|+. ++||.||.|+|.++.
T Consensus 145 ~~~-G~~i~~~~~V~~i~~~~~~~~v~t~-~g~~---~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 145 AGI-RLTLHFNTEITSLERDGEGWQLLDA-NGEV---IAASVVVLANGAQAG 191 (381)
T ss_pred cCC-CcEEEeCCEEEEEEEcCCeEEEEeC-CCCE---EEcCEEEEcCCcccc
Confidence 344 8999999999999988888888888 8876 899999999999984
No 300
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.48 E-value=0.00012 Score=76.40 Aligned_cols=33 Identities=21% Similarity=0.297 Sum_probs=31.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAR 38 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~ 38 (379)
+|||+||||||+|..+|..+++.|.+|+|||++
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~ 148 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 689999999999999999999999999999975
No 301
>KOG4254|consensus
Probab=97.38 E-value=0.00047 Score=66.81 Aligned_cols=55 Identities=15% Similarity=0.295 Sum_probs=45.9
Q ss_pred HHhcCCCCeEEeCceEEEEEecCCeEE-EEEccCCceeEEEeecEEEecCCCChHHHHHh
Q psy9141 105 ELEQYPDCNIYFQHKLINLDVNSGNVT-FYRTEDNSETKITDNQLIIGADGAYSGVRKCL 163 (379)
Q Consensus 105 ~~~~~~gv~i~~~~~v~~i~~~~~~v~-v~~~~~G~~~~~i~adlVV~AdG~~S~vr~~l 163 (379)
...+..|.+|.+...|.+|..+.+.+. |+++ ||++ ++++.||--.+.+-..-+.+
T Consensus 272 ~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~-dG~e---v~sk~VvSNAt~~~Tf~kLl 327 (561)
T KOG4254|consen 272 EGAKRAGAEIFTKATVQSILLDSGKAVGVRLA-DGTE---VRSKIVVSNATPWDTFEKLL 327 (561)
T ss_pred HHHHhccceeeehhhhhheeccCCeEEEEEec-CCcE---EEeeeeecCCchHHHHHHhC
Confidence 445567999999999999998887655 7888 9998 99999999888888776665
No 302
>KOG2311|consensus
Probab=97.38 E-value=0.00019 Score=69.86 Aligned_cols=35 Identities=29% Similarity=0.320 Sum_probs=32.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
++|||||||||-||+-+|.+.+|.|-+.+++-.+-
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~l 61 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNL 61 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCceEEeeccc
Confidence 46899999999999999999999999999987664
No 303
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.38 E-value=0.0021 Score=63.91 Aligned_cols=92 Identities=20% Similarity=0.210 Sum_probs=63.5
Q ss_pred cEEEECCChHHHHHHHHHHh--------------CCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHH
Q psy9141 8 SVVIVGGGLVGSLSACMFAK--------------NQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKL 73 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~--------------~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l 73 (379)
.|+|||||++|+-+|..|+. .+.+|+++|+.+..-.. +.+...+.++
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~-----------~~~~~~~~~~-------- 235 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS-----------FDQALRKYGQ-------- 235 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc-----------CCHHHHHHHH--------
Confidence 79999999999999999985 47889999877533110 1111100000
Q ss_pred HhCCCCceeeEEEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecC
Q psy9141 74 LAHGIPMRARMIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGAD 153 (379)
Q Consensus 74 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~Ad 153 (379)
+.+ +..|++++.+++|++++. +. +.+. +|++ +.+|+||.|.
T Consensus 236 ------------------------------~~L-~~~gV~v~~~~~v~~v~~--~~--v~~~-~g~~---i~~d~vi~~~ 276 (424)
T PTZ00318 236 ------------------------------RRL-RRLGVDIRTKTAVKEVLD--KE--VVLK-DGEV---IPTGLVVWST 276 (424)
T ss_pred ------------------------------HHH-HHCCCEEEeCCeEEEEeC--CE--EEEC-CCCE---EEccEEEEcc
Confidence 112 235899999999988864 33 4466 8887 9999999999
Q ss_pred CCCh
Q psy9141 154 GAYS 157 (379)
Q Consensus 154 G~~S 157 (379)
|...
T Consensus 277 G~~~ 280 (424)
T PTZ00318 277 GVGP 280 (424)
T ss_pred CCCC
Confidence 9654
No 304
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00028 Score=66.23 Aligned_cols=110 Identities=20% Similarity=0.270 Sum_probs=65.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI 85 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~ 85 (379)
.|||+||||||+|.++|++.||.|++.-++-.+ +.|. .|+.+++..- +.+
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aer--------fGGQ------------vldT~~IENf----------Isv 260 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAER--------FGGQ------------VLDTMGIENF----------ISV 260 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhhhhhhh--------hCCe------------eccccchhhe----------ecc
Confidence 599999999999999999999999987554211 0021 1222222110 000
Q ss_pred EecCCcEEEeeCCCCCcH-HHHhcCCCCeEEeCceEEEEEec---CCeEEEEEccCCceeEEEeecEEEecCCCC
Q psy9141 86 HGQNGKLREIPYDPVHNQ-VELEQYPDCNIYFQHKLINLDVN---SGNVTFYRTEDNSETKITDNQLIIGADGAY 156 (379)
Q Consensus 86 ~~~~g~~~~~~~~~~~~~-~~~~~~~gv~i~~~~~v~~i~~~---~~~v~v~~~~~G~~~~~i~adlVV~AdG~~ 156 (379)
....|.. +. .. ++--+.-.+++....++++++.. ++-..++++ +|.. +.++-||.++|++
T Consensus 261 ~~teGpk----l~---~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~-nGav---LkaktvIlstGAr 324 (520)
T COG3634 261 PETEGPK----LA---AALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELA-NGAV---LKARTVILATGAR 324 (520)
T ss_pred ccccchH----HH---HHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEec-CCce---eccceEEEecCcc
Confidence 0001110 00 00 11112235666666666666653 445778888 9988 8999999999975
No 305
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.37 E-value=0.0019 Score=60.41 Aligned_cols=98 Identities=17% Similarity=0.174 Sum_probs=67.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI 85 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~ 85 (379)
..+|+|||+|++|+-+|..|++.+.+|+++++.+... ..+ .+
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~-------------~~~-------------~~------------ 182 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR-------------AEK-------------IL------------ 182 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC-------------cCH-------------HH------------
Confidence 3589999999999999999999999999999864221 000 00
Q ss_pred EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEc--cCCceeEEEeecEEEecCCCChHH
Q psy9141 86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRT--EDNSETKITDNQLIIGADGAYSGV 159 (379)
Q Consensus 86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~--~~G~~~~~i~adlVV~AdG~~S~v 159 (379)
...+.+..++++++++++++++.++....+++. .+|+..+ +++|.||.|.|.....
T Consensus 183 -----------------~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~-i~~D~vi~a~G~~~~~ 240 (300)
T TIGR01292 183 -----------------LDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEE-LKVDGVFIAIGHEPNT 240 (300)
T ss_pred -----------------HHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEE-EEccEEEEeeCCCCCh
Confidence 011222248889999999998765532223332 1354445 9999999999977644
No 306
>PLN02546 glutathione reductase
Probab=97.35 E-value=0.0022 Score=65.87 Aligned_cols=101 Identities=12% Similarity=0.214 Sum_probs=69.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI 85 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~ 85 (379)
.-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.... .+.+.....+.
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~-----------~~d~~~~~~l~-------------------- 300 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR-----------GFDEEVRDFVA-------------------- 300 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc-----------ccCHHHHHHHH--------------------
Confidence 35899999999999999999999999999997753310 01111111100
Q ss_pred EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecC-CeEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141 86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNS-GNVTFYRTEDNSETKITDNQLIIGADGAYSGVR 160 (379)
Q Consensus 86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr 160 (379)
..+ +..|++++.++++++++.++ +.+.+.+. +++. ..+|.||.|.|+...+.
T Consensus 301 ------------------~~L-~~~GV~i~~~~~v~~i~~~~~g~v~v~~~-~g~~---~~~D~Viva~G~~Pnt~ 353 (558)
T PLN02546 301 ------------------EQM-SLRGIEFHTEESPQAIIKSADGSLSLKTN-KGTV---EGFSHVMFATGRKPNTK 353 (558)
T ss_pred ------------------HHH-HHCCcEEEeCCEEEEEEEcCCCEEEEEEC-CeEE---EecCEEEEeeccccCCC
Confidence 112 23589999999999997643 44556555 5543 55899999999998764
No 307
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.31 E-value=0.0023 Score=65.33 Aligned_cols=97 Identities=21% Similarity=0.278 Sum_probs=68.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH 86 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 86 (379)
.+|+|||||+.|+-+|..|++.|.+|+++|+.+... . . .. +
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~---------------~-~-~~---------l------------- 393 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK---------------A-D-KV---------L------------- 393 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC---------------h-h-HH---------H-------------
Confidence 489999999999999999999999999998654220 0 0 00 0
Q ss_pred ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEE-EEEc--cCCceeEEEeecEEEecCCCChHH
Q psy9141 87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVT-FYRT--EDNSETKITDNQLIIGADGAYSGV 159 (379)
Q Consensus 87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~-v~~~--~~G~~~~~i~adlVV~AdG~~S~v 159 (379)
...+....|+++++++.+++++.+++.++ +.+. .+|+..+ +++|.||.|.|....+
T Consensus 394 ----------------~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~-i~~D~vi~a~G~~Pn~ 452 (515)
T TIGR03140 394 ----------------QDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQ-LDLDGVFVQIGLVPNT 452 (515)
T ss_pred ----------------HHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEE-EEcCEEEEEeCCcCCc
Confidence 01122235899999999999987655543 5443 1244345 9999999999987644
No 308
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.30 E-value=0.00023 Score=72.88 Aligned_cols=36 Identities=31% Similarity=0.362 Sum_probs=33.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
..++|+||||+|.+|+.+|..|++.|.+|+|+|+..
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 347999999999999999999999999999999995
No 309
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.30 E-value=0.0003 Score=72.55 Aligned_cols=37 Identities=27% Similarity=0.457 Sum_probs=33.7
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR 42 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~ 42 (379)
..+|+||||||+||++|..|++.|++|+|+|+.+...
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~G 173 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLG 173 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 3589999999999999999999999999999987653
No 310
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.30 E-value=0.00033 Score=67.78 Aligned_cols=36 Identities=33% Similarity=0.481 Sum_probs=33.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~ 41 (379)
..+|+|||||++|+.+|..|++.|++|+++|+.+.+
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~ 53 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEP 53 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 469999999999999999999999999999998755
No 311
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.28 E-value=0.0014 Score=66.96 Aligned_cols=53 Identities=25% Similarity=0.331 Sum_probs=39.8
Q ss_pred HHhcCCCCeEEeCceEEEEEecCCeEE-EEEc--cCCceeEEEeecEEEecCCCChH
Q psy9141 105 ELEQYPDCNIYFQHKLINLDVNSGNVT-FYRT--EDNSETKITDNQLIIGADGAYSG 158 (379)
Q Consensus 105 ~~~~~~gv~i~~~~~v~~i~~~~~~v~-v~~~--~~G~~~~~i~adlVV~AdG~~S~ 158 (379)
..+...|++++.+++|++++.+++++. +++. .+|+..+ ++|+.||.|.|.+|.
T Consensus 136 ~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~-i~a~~VVnAaG~wa~ 191 (516)
T TIGR03377 136 LDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEER-IEAQVVINAAGIWAG 191 (516)
T ss_pred HHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEE-EEcCEEEECCCcchH
Confidence 334456999999999999998777643 3332 1454445 999999999999985
No 312
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.26 E-value=0.00027 Score=70.42 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=34.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR 42 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~ 42 (379)
..|+||||||+||++|..|++.|++|+++|+.+.+.
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~G 159 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDG 159 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCc
Confidence 689999999999999999999999999999998764
No 313
>KOG2960|consensus
Probab=97.26 E-value=0.00067 Score=59.48 Aligned_cols=36 Identities=36% Similarity=0.463 Sum_probs=31.8
Q ss_pred CcEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDIR 42 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~~ 42 (379)
.||+|||||-+||++|+..++. .++|.|||..-.+.
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPG 114 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPG 114 (328)
T ss_pred cceEEECCCccccceeeeeeccCCCceEEEEEeeecCC
Confidence 5999999999999999999854 78999999887664
No 314
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.25 E-value=0.00036 Score=70.61 Aligned_cols=35 Identities=26% Similarity=0.416 Sum_probs=32.9
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~ 41 (379)
.+|+||||||+|+++|..|++.|++|+|+|+.+.+
T Consensus 144 ~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~ 178 (485)
T TIGR01317 144 KKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRC 178 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 69999999999999999999999999999998754
No 315
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.19 E-value=0.0047 Score=59.79 Aligned_cols=33 Identities=36% Similarity=0.284 Sum_probs=30.1
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCc-EEEEccCC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYE-VNLYEARE 39 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~-V~viE~~~ 39 (379)
..|+|||+|+.|+-+|..|++.|.+ |+|+++.+
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 4799999999999999999999997 99999764
No 316
>PLN03000 amine oxidase
Probab=97.18 E-value=0.00048 Score=73.10 Aligned_cols=37 Identities=38% Similarity=0.523 Sum_probs=34.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR 42 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~ 42 (379)
..+|+|||||++|+.+|..|++.|++|+|+|+++.+.
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riG 220 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPG 220 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCC
Confidence 5799999999999999999999999999999987654
No 317
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.14 E-value=0.00037 Score=71.39 Aligned_cols=33 Identities=30% Similarity=0.459 Sum_probs=31.0
Q ss_pred cEEEECCChHHHHHHHHHHhCC-CcEEEEccCCC
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQ-YEVNLYEARED 40 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G-~~V~viE~~~~ 40 (379)
|+||||||.+|+.+|..|++.| ++|+|||+.+.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 8999999999999999999998 79999999863
No 318
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.13 E-value=0.017 Score=57.44 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=31.6
Q ss_pred CcEEEECCChHHHHHHHHHHhC----CCcEEEEccCCCCC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKN----QYEVNLYEAREDIR 42 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~----G~~V~viE~~~~~~ 42 (379)
.++=|||+|+|+|++|..|-|- |-+|+|+|+.+.+.
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~G 42 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPG 42 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCC
Confidence 4788999999999999999986 55999999988654
No 319
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.13 E-value=0.0059 Score=62.34 Aligned_cols=97 Identities=19% Similarity=0.230 Sum_probs=70.3
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH 86 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 86 (379)
.+|+|||||..|+-+|..|+..+.+|+|+++.+.... . ..+.
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~-----~---------------------~~l~------------ 393 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA-----D---------------------QVLQ------------ 393 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc-----c---------------------HHHH------------
Confidence 4899999999999999999999999999987753210 0 0000
Q ss_pred ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEE-EEEc--cCCceeEEEeecEEEecCCCChHH
Q psy9141 87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVT-FYRT--EDNSETKITDNQLIIGADGAYSGV 159 (379)
Q Consensus 87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~-v~~~--~~G~~~~~i~adlVV~AdG~~S~v 159 (379)
..+.+..|+++++++.+++++.+++.++ +.+. .+|++.+ +.+|.|+.|.|....+
T Consensus 394 -----------------~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~-i~~D~v~~~~G~~p~~ 451 (517)
T PRK15317 394 -----------------DKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHH-LELEGVFVQIGLVPNT 451 (517)
T ss_pred -----------------HHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEE-EEcCEEEEeECCccCc
Confidence 1122236899999999999987755543 3332 1455556 9999999999998644
No 320
>PLN02785 Protein HOTHEAD
Probab=97.09 E-value=0.00058 Score=70.52 Aligned_cols=34 Identities=26% Similarity=0.423 Sum_probs=31.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED 40 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~ 40 (379)
.||+||||||.+|+.+|..|++ +.+|+|||+.+.
T Consensus 55 ~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 55 AYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred cCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 6999999999999999999999 699999999974
No 321
>PRK13984 putative oxidoreductase; Provisional
Probab=97.09 E-value=0.00066 Score=70.65 Aligned_cols=37 Identities=38% Similarity=0.534 Sum_probs=33.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR 42 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~ 42 (379)
..+|+|||+||+|+++|..|++.|++|+|+|+.+...
T Consensus 283 ~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~g 319 (604)
T PRK13984 283 NKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPG 319 (604)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 4689999999999999999999999999999987553
No 322
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.07 E-value=0.0022 Score=61.74 Aligned_cols=143 Identities=16% Similarity=0.142 Sum_probs=76.6
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCC--cEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHH--HHhCCCCce
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQY--EVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDK--LLAHGIPMR 81 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~--~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~--l~~~~~~~~ 81 (379)
...|+|||||.++.-++..|.+.+- +|+++=|++..... .++.-.+-...|...+.+..+-...+ +........
T Consensus 190 ~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~--d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~n 267 (341)
T PF13434_consen 190 GKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPM--DDSPFVNEIFSPEYVDYFYSLPDEERRELLREQRHTN 267 (341)
T ss_dssp -EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB------CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGT
T ss_pred CCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCC--ccccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhc
Confidence 4689999999999999999998875 89999998755421 11111011367888888877743211 111110000
Q ss_pred eeEEEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecC-CeEEEEEcc--CCceeEEEeecEEEecCCC
Q psy9141 82 ARMIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNS-GNVTFYRTE--DNSETKITDNQLIIGADGA 155 (379)
Q Consensus 82 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~v~v~~~~--~G~~~~~i~adlVV~AdG~ 155 (379)
.-.+ +. .....-|...+. ..+.....++++.+++|++++.++ +++.+++.+ .|+..+ +++|.||.|+|-
T Consensus 268 y~~i-~~--~~l~~iy~~lY~-~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~-~~~D~VilATGy 339 (341)
T PF13434_consen 268 YGGI-DP--DLLEAIYDRLYE-QRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEET-LEVDAVILATGY 339 (341)
T ss_dssp SSEB--H--HHHHHHHHHHHH-HHHHT---SEEETTEEEEEEEEES-SSEEEEEEETTT--EEE-EEESEEEE---E
T ss_pred CCCC-CH--HHHHHHHHHHHH-HHhcCCCCeEEeCCCEEEEEEECCCCEEEEEEEECCCCCeEE-EecCEEEEcCCc
Confidence 0000 00 000000000000 234444569999999999999988 488887761 355556 999999999994
No 323
>PLN02976 amine oxidase
Probab=97.03 E-value=0.00076 Score=74.41 Aligned_cols=37 Identities=30% Similarity=0.561 Sum_probs=33.7
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR 42 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~ 42 (379)
..+|+|||||++|+++|+.|++.|++|+|+|+.+.+.
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vG 729 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIG 729 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCC
Confidence 4799999999999999999999999999999986553
No 324
>PRK10262 thioredoxin reductase; Provisional
Probab=97.02 E-value=0.0096 Score=56.76 Aligned_cols=101 Identities=16% Similarity=0.148 Sum_probs=67.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH 86 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 86 (379)
.+|+|||+|..|+-+|..|++.|.+|+++++.+.... .+... +.+
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~-------------~~~~~---------~~~------------- 191 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA-------------EKILI---------KRL------------- 191 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccCC-------------CHHHH---------HHH-------------
Confidence 4899999999999999999999999999998753210 00000 000
Q ss_pred ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeE-EEEEcc---CCceeEEEeecEEEecCCCChHHH
Q psy9141 87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNV-TFYRTE---DNSETKITDNQLIIGADGAYSGVR 160 (379)
Q Consensus 87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v-~v~~~~---~G~~~~~i~adlVV~AdG~~S~vr 160 (379)
....+..+++++.++.+++++.+++++ .+++.. +++..+ +.+|.||.|.|......
T Consensus 192 -----------------~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~-i~~D~vv~a~G~~p~~~ 251 (321)
T PRK10262 192 -----------------MDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIES-LDVAGLFVAIGHSPNTA 251 (321)
T ss_pred -----------------HhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEE-EECCEEEEEeCCccChh
Confidence 001112578899999999997665433 233330 123334 99999999999876543
No 325
>KOG1276|consensus
Probab=97.02 E-value=0.0007 Score=65.29 Aligned_cols=70 Identities=24% Similarity=0.383 Sum_probs=45.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcE--EEEccCCCCCCC--C-CCC--------Cccccc--ccCHHHHHHHHHCCCh
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEV--NLYEAREDIRNS--G-LSE--------GKSINL--ALSVRGREALRRIGLE 70 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V--~viE~~~~~~~~--~-~~~--------g~~i~~--al~~~~~~~l~~lGl~ 70 (379)
..+|+|||||++||++|++|++.+-++ +|+|+++..... + ..+ .|++.- ......+.++..+|+.
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLGl~ 90 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLGLE 90 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcCcc
Confidence 468999999999999999999998765 569998754311 0 000 111100 0122567788889987
Q ss_pred HHHHh
Q psy9141 71 DKLLA 75 (379)
Q Consensus 71 ~~l~~ 75 (379)
+++..
T Consensus 91 ~e~~~ 95 (491)
T KOG1276|consen 91 DELQP 95 (491)
T ss_pred ceeee
Confidence 65543
No 326
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.00 E-value=0.0026 Score=60.72 Aligned_cols=49 Identities=14% Similarity=0.283 Sum_probs=39.5
Q ss_pred HHhcCCCCeEEeCceEEEEEecCCeEE-EEEccCCceeEEEeecEEEecCCCChH
Q psy9141 105 ELEQYPDCNIYFQHKLINLDVNSGNVT-FYRTEDNSETKITDNQLIIGADGAYSG 158 (379)
Q Consensus 105 ~~~~~~gv~i~~~~~v~~i~~~~~~v~-v~~~~~G~~~~~i~adlVV~AdG~~S~ 158 (379)
+.....|++++.+++|++++.+++++. +.+. +| + +.||.||.|+|.+|.
T Consensus 145 ~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~-~g-~---~~a~~vV~a~G~~~~ 194 (337)
T TIGR02352 145 KALEKLGVEIIEHTEVQHIEIRGEKVTAIVTP-SG-D---VQADQVVLAAGAWAG 194 (337)
T ss_pred HHHHHcCCEEEccceEEEEEeeCCEEEEEEcC-CC-E---EECCEEEEcCChhhh
Confidence 334456999999999999998887765 5555 56 4 899999999999985
No 327
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.92 E-value=0.0051 Score=60.14 Aligned_cols=50 Identities=18% Similarity=0.206 Sum_probs=35.7
Q ss_pred hcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCC-hHHHHHh
Q psy9141 107 EQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAY-SGVRKCL 163 (379)
Q Consensus 107 ~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~-S~vr~~l 163 (379)
.+..||+|+.++.|++++.+ ++++. +|++ + |.++.+|=|.|.. |.+-+.+
T Consensus 219 L~~~GV~v~l~~~Vt~v~~~--~v~~~---~g~~-~-I~~~tvvWaaGv~a~~~~~~l 269 (405)
T COG1252 219 LEKLGVEVLLGTPVTEVTPD--GVTLK---DGEE-E-IPADTVVWAAGVRASPLLKDL 269 (405)
T ss_pred HHHCCCEEEcCCceEEECCC--cEEEc---cCCe-e-EecCEEEEcCCCcCChhhhhc
Confidence 33469999999999999754 44444 5552 3 9999999999965 4444443
No 328
>KOG1800|consensus
Probab=96.86 E-value=0.0014 Score=62.37 Aligned_cols=38 Identities=29% Similarity=0.319 Sum_probs=33.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDIR 42 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~~ 42 (379)
+...|+|||+||||..+|..|.++ +.+|.|+|+.+.+.
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPF 58 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPF 58 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccc
Confidence 346899999999999999988874 68999999999774
No 329
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.77 E-value=0.011 Score=59.26 Aligned_cols=34 Identities=26% Similarity=0.273 Sum_probs=30.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE 39 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~ 39 (379)
.-+|+|||||.+|+-+|..|++.|. +|+++++.+
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 3589999999999999999999998 899999864
No 330
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.75 E-value=0.0027 Score=61.10 Aligned_cols=142 Identities=12% Similarity=0.130 Sum_probs=79.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCC-CcEEEEccCCCCCCCCCCCCcccccccCHHHHH--HHHHCCChHHHHhCCCCc
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKNQ-YEVNLYEAREDIRNSGLSEGKSINLALSVRGRE--ALRRIGLEDKLLAHGIPM 80 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~G-~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~--~l~~lGl~~~l~~~~~~~ 80 (379)
+..+|++.||-||.-|++|+.|..++ +++..+||.+...-. +.. .+...+++ .++.| ..-..|.
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WH----pGm---llegstlQv~FlkDL------VTl~~PT 69 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWH----PGM---LLEGSTLQVPFLKDL------VTLVDPT 69 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcC----CCc---ccCCccccccchhhh------ccccCCC
Confidence 67899999999999999999999885 789999999977533 111 11111111 12222 1111122
Q ss_pred eeeEE---EecCCcEEEee-CCCC------CcH--HHHhcCCCCeEEeCceEEEEEecC-C-eEE--EEEccCCceeEEE
Q psy9141 81 RARMI---HGQNGKLREIP-YDPV------HNQ--VELEQYPDCNIYFQHKLINLDVNS-G-NVT--FYRTEDNSETKIT 144 (379)
Q Consensus 81 ~~~~~---~~~~g~~~~~~-~~~~------~~~--~~~~~~~gv~i~~~~~v~~i~~~~-~-~v~--v~~~~~G~~~~~i 144 (379)
....+ ....++...+- ++.. +++ .-++.. --.++++++|++|..-+ + ... +... +++. +
T Consensus 70 s~ySFLNYL~~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~-l~~~rfg~~V~~i~~~~~d~~~~~~~~t~-~~~~---y 144 (436)
T COG3486 70 SPYSFLNYLHEHGRLYEFLNYETFHIPRREYNDYCQWAASQ-LPSLRFGEEVTDISSLDGDAVVRLFVVTA-NGTV---Y 144 (436)
T ss_pred CchHHHHHHHHcchHhhhhhhhcccccHHHHHHHHHHHHhh-CCccccCCeeccccccCCcceeEEEEEcC-CCcE---E
Confidence 11111 11222221110 0100 011 222332 25688999999773322 2 222 4444 6666 9
Q ss_pred eecEEEecCCCChHHHHHh
Q psy9141 145 DNQLIIGADGAYSGVRKCL 163 (379)
Q Consensus 145 ~adlVV~AdG~~S~vr~~l 163 (379)
+|+-||...|..-.+...+
T Consensus 145 ~ar~lVlg~G~~P~IP~~f 163 (436)
T COG3486 145 RARNLVLGVGTQPYIPPCF 163 (436)
T ss_pred EeeeEEEccCCCcCCChHH
Confidence 9999999999988776655
No 331
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.58 E-value=0.0021 Score=60.04 Aligned_cols=36 Identities=36% Similarity=0.506 Sum_probs=32.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~ 41 (379)
...|.|||||.||.-+|+.++++|++|.++|-++..
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k 38 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK 38 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence 457999999999999999999999999999988643
No 332
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=96.54 E-value=0.03 Score=54.34 Aligned_cols=41 Identities=12% Similarity=0.018 Sum_probs=32.0
Q ss_pred CCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141 110 PDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG 158 (379)
Q Consensus 110 ~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~ 158 (379)
.+++++.++++++++.+ .+.+. +|++ +.+|.||.|.|....
T Consensus 204 ~gV~v~~~~~v~~i~~~----~v~~~-~g~~---i~~D~vi~a~G~~p~ 244 (364)
T TIGR03169 204 RGIEVHEGAPVTRGPDG----ALILA-DGRT---LPADAILWATGARAP 244 (364)
T ss_pred CCCEEEeCCeeEEEcCC----eEEeC-CCCE---EecCEEEEccCCChh
Confidence 57888888888887532 35556 7877 999999999997753
No 333
>KOG0399|consensus
Probab=96.51 E-value=0.0025 Score=67.95 Aligned_cols=36 Identities=31% Similarity=0.461 Sum_probs=33.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR 42 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~ 42 (379)
..|+|||.||+||++|-.|.+.|+.|+|+||.....
T Consensus 1786 ~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~g 1821 (2142)
T KOG0399|consen 1786 KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVG 1821 (2142)
T ss_pred cEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcC
Confidence 589999999999999999999999999999998664
No 334
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=96.51 E-value=0.044 Score=54.94 Aligned_cols=33 Identities=36% Similarity=0.340 Sum_probs=31.1
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
.+|+|||||.+|+-+|..|++.|.+|+++++.+
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 479999999999999999999999999999875
No 335
>KOG0405|consensus
Probab=96.51 E-value=0.023 Score=53.69 Aligned_cols=135 Identities=15% Similarity=0.083 Sum_probs=75.3
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccc--cccCHHHHHHHHHCCChHHHHhCCCCce
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSIN--LALSVRGREALRRIGLEDKLLAHGIPMR 81 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~--~al~~~~~~~l~~lGl~~~l~~~~~~~~ 81 (379)
.++||.+|||||-.|++.|+..+..|.+|.|+|..-..... +-.++.. -.++..+ .+-.. .+.-...+++.+
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGT--CVn~GCVPKKvm~~~a-~~~~~---~~da~~yG~~~~ 91 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGT--CVNVGCVPKKVMWYAA-DYSEE---MEDAKDYGFPIN 91 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCce--EEeeccccceeEEehh-hhhHH---hhhhhhcCCccc
Confidence 45799999999999999999999999999999976322211 1111100 0000000 00000 011111233322
Q ss_pred eeEEEecCCcEEEeeCCCCC---------cH-----HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeec
Q psy9141 82 ARMIHGQNGKLREIPYDPVH---------NQ-----VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQ 147 (379)
Q Consensus 82 ~~~~~~~~g~~~~~~~~~~~---------~~-----~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~ad 147 (379)
.. ..|.|.. .+ +......++++..+..- -.+++.++|+.. ||++.. ++|+
T Consensus 92 ~~-----------~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~---f~~~~~v~V~~~-d~~~~~-Ytak 155 (478)
T KOG0405|consen 92 EE-----------GSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRAR---FVSPGEVEVEVN-DGTKIV-YTAK 155 (478)
T ss_pred cc-----------cCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEE---EcCCCceEEEec-CCeeEE-Eecc
Confidence 11 1122211 00 33344456777766421 124566788877 887655 8999
Q ss_pred EEEecCCCChHHH
Q psy9141 148 LIIGADGAYSGVR 160 (379)
Q Consensus 148 lVV~AdG~~S~vr 160 (379)
.+..|.|.+....
T Consensus 156 ~iLIAtGg~p~~P 168 (478)
T KOG0405|consen 156 HILIATGGRPIIP 168 (478)
T ss_pred eEEEEeCCccCCC
Confidence 9999999987655
No 336
>KOG0404|consensus
Probab=96.51 E-value=0.0062 Score=54.03 Aligned_cols=111 Identities=17% Similarity=0.226 Sum_probs=65.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH 86 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 86 (379)
..|+|||.||++-.+|+++++.-++-+++|-.-..... .|... +- ...+-
T Consensus 9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~---pGGQL----tT-----------------------TT~ve 58 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIA---PGGQL----TT-----------------------TTDVE 58 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcC---CCcee----ee-----------------------eeccc
Confidence 48999999999999999999999999999955422211 01110 00 00111
Q ss_pred ecCCcEEEeeCCCCCcH-----HHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141 87 GQNGKLREIPYDPVHNQ-----VELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS 157 (379)
Q Consensus 87 ~~~g~~~~~~~~~~~~~-----~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S 157 (379)
+..| +|-+..-.. ...+..-|.+|... .|.+++....-..+.++ .+. +.||-||.|+|+..
T Consensus 59 NfPG----FPdgi~G~~l~d~mrkqs~r~Gt~i~tE-tVskv~~sskpF~l~td--~~~---v~~~avI~atGAsA 124 (322)
T KOG0404|consen 59 NFPG----FPDGITGPELMDKMRKQSERFGTEIITE-TVSKVDLSSKPFKLWTD--ARP---VTADAVILATGASA 124 (322)
T ss_pred cCCC----CCcccccHHHHHHHHHHHHhhcceeeee-ehhhccccCCCeEEEec--CCc---eeeeeEEEecccce
Confidence 1111 111111001 22233346666654 56777777766666554 334 88999999999854
No 337
>KOG1336|consensus
Probab=96.38 E-value=0.025 Score=55.63 Aligned_cols=101 Identities=16% Similarity=0.187 Sum_probs=73.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH 86 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 86 (379)
-.|++||+|..|+-+|..|.-.+.+|+++++.+.+-. +. +. +.+.+.
T Consensus 214 ~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~------~l----f~-------------~~i~~~---------- 260 (478)
T KOG1336|consen 214 GKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLP------RL----FG-------------PSIGQF---------- 260 (478)
T ss_pred ceEEEECchHHHHHHHHHHHhcCceEEEEccCccchh------hh----hh-------------HHHHHH----------
Confidence 4699999999999999999999999999998764421 00 00 011000
Q ss_pred ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCC--eEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141 87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSG--NVTFYRTEDNSETKITDNQLIIGADGAYSGVR 160 (379)
Q Consensus 87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~--~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr 160 (379)
-+...+..+++++.++.+.+++.+.+ ...+.+. ||++ +.||+||...|+.+.+-
T Consensus 261 ----------------~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~-dg~~---l~adlvv~GiG~~p~t~ 316 (478)
T KOG1336|consen 261 ----------------YEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLK-DGKT---LEADLVVVGIGIKPNTS 316 (478)
T ss_pred ----------------HHHHHHhcCeEEEEecceeecccCCCCcEEEEEec-cCCE---eccCeEEEeeccccccc
Confidence 02233346899999999999987763 3447788 9998 99999999999987543
No 338
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.38 E-value=0.039 Score=56.87 Aligned_cols=33 Identities=18% Similarity=0.396 Sum_probs=30.9
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
.+|+|||||++|+-+|..|++.|.+|+++++.+
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 579999999999999999999999999999875
No 339
>PRK12831 putative oxidoreductase; Provisional
Probab=96.31 E-value=0.035 Score=55.85 Aligned_cols=33 Identities=33% Similarity=0.343 Sum_probs=31.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
.+|+|||||.+|+-+|..|.+.|.+|+++++..
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 489999999999999999999999999999865
No 340
>KOG1238|consensus
Probab=96.25 E-value=0.0044 Score=63.00 Aligned_cols=37 Identities=35% Similarity=0.534 Sum_probs=33.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhC-CCcEEEEccCCCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKN-QYEVNLYEAREDI 41 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~-G~~V~viE~~~~~ 41 (379)
..||.+|||||-|||.+|..|++. .++|+|+|+...+
T Consensus 56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 469999999999999999999998 6899999999765
No 341
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.10 E-value=0.01 Score=61.15 Aligned_cols=99 Identities=19% Similarity=0.215 Sum_probs=66.1
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH 86 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 86 (379)
-..+|||||.-|+-+|..|.+.|.+|+|++=.+..-.. .|...+-++|+..
T Consensus 146 ~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMer----------QLD~~ag~lL~~~------------------- 196 (793)
T COG1251 146 KKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMER----------QLDRTAGRLLRRK------------------- 196 (793)
T ss_pred CCcEEEccchhhhHHHHHHHhCCCceEEEeecchHHHH----------hhhhHHHHHHHHH-------------------
Confidence 35799999999999999999999999999755432111 1223333333221
Q ss_pred ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChH
Q psy9141 87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSG 158 (379)
Q Consensus 87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~ 158 (379)
.+..|++++++...+.+...+....++++ ||+. +.||+||-|+|.+-.
T Consensus 197 --------------------le~~Gi~~~l~~~t~ei~g~~~~~~vr~~-DG~~---i~ad~VV~a~GIrPn 244 (793)
T COG1251 197 --------------------LEDLGIKVLLEKNTEEIVGEDKVEGVRFA-DGTE---IPADLVVMAVGIRPN 244 (793)
T ss_pred --------------------HHhhcceeecccchhhhhcCcceeeEeec-CCCc---ccceeEEEecccccc
Confidence 11235555555555555443334457788 9998 999999999998764
No 342
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.08 E-value=0.0077 Score=51.23 Aligned_cols=32 Identities=31% Similarity=0.533 Sum_probs=29.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
.|.|+|||..|.++|..|+++|++|+++.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 48999999999999999999999999998764
No 343
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.02 E-value=0.11 Score=53.83 Aligned_cols=49 Identities=12% Similarity=0.093 Sum_probs=37.8
Q ss_pred CCCCeEEeCceEEEEEec-CCeEE---E-EEccCCceeEEEeecEEEecCCCChHH
Q psy9141 109 YPDCNIYFQHKLINLDVN-SGNVT---F-YRTEDNSETKITDNQLIIGADGAYSGV 159 (379)
Q Consensus 109 ~~gv~i~~~~~v~~i~~~-~~~v~---v-~~~~~G~~~~~i~adlVV~AdG~~S~v 159 (379)
..+++++.++.++++..+ ++.|. + ... +|+... +.|+-||.|+|..+.+
T Consensus 138 ~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~-~g~~~~-i~AkaVVLATGG~~~~ 191 (570)
T PRK05675 138 KNGTTFLNEWYAVDLVKNQDGAVVGVIAICIE-TGETVY-IKSKATVLATGGAGRI 191 (570)
T ss_pred ccCCEEEECcEEEEEEEcCCCeEEEEEEEEcC-CCcEEE-EecCeEEECCCCcccc
Confidence 468999999999998875 44433 3 224 777666 8999999999999854
No 344
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.97 E-value=0.0058 Score=53.52 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=27.2
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARED 40 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~ 40 (379)
.|.|||.|.+||.+|..||+.|++|+.+|.++.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 599999999999999999999999999998863
No 345
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.94 E-value=0.0089 Score=52.13 Aligned_cols=32 Identities=38% Similarity=0.719 Sum_probs=28.2
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
.|.|||||..|...|..++..|++|+++|.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 48999999999999999999999999999875
No 346
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.90 E-value=0.012 Score=56.01 Aligned_cols=36 Identities=19% Similarity=0.492 Sum_probs=32.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
|....|+|||+|-.|..+|..|++.|++|+++.|+.
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 445689999999999999999999999999998764
No 347
>KOG4716|consensus
Probab=95.81 E-value=0.009 Score=56.15 Aligned_cols=34 Identities=21% Similarity=0.189 Sum_probs=31.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAR 38 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~ 38 (379)
.+||.+|||||-+||++|-..++.|.+|.++|--
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV 51 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDFV 51 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHhcCCcEEEEeec
Confidence 4799999999999999999999999999999854
No 348
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=95.76 E-value=0.12 Score=50.79 Aligned_cols=45 Identities=7% Similarity=0.107 Sum_probs=35.4
Q ss_pred CCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCCh
Q psy9141 110 PDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYS 157 (379)
Q Consensus 110 ~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S 157 (379)
.+++|+++++|++|+.+++++++....+|++ +.||.||.|.-...
T Consensus 210 ~g~~i~~~~~V~~i~~~~~~~~~~~~~~g~~---~~~d~vi~a~p~~~ 254 (419)
T TIGR03467 210 RGGEVRLGTRVRSIEANAGGIRALVLSGGET---LPADAVVLAVPPRH 254 (419)
T ss_pred cCCEEEcCCeeeEEEEcCCcceEEEecCCcc---ccCCEEEEcCCHHH
Confidence 4789999999999999888766543226766 89999999876554
No 349
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.71 E-value=0.015 Score=58.15 Aligned_cols=36 Identities=31% Similarity=0.366 Sum_probs=33.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
++...|+|||+|.+|+.+|..|++.|++|+++|+..
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 556789999999999999999999999999999864
No 350
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.69 E-value=0.013 Score=52.97 Aligned_cols=60 Identities=18% Similarity=0.300 Sum_probs=44.4
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCC--C-CCCCcccccccCHHHHHHHHHCCC
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNS--G-LSEGKSINLALSVRGREALRRIGL 69 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~--~-~~~g~~i~~al~~~~~~~l~~lGl 69 (379)
+++|||+|..|...|..|.+.|++|+++|+++..... + ..+...+ .........|+++|+
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v--~gd~t~~~~L~~agi 64 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVV--IGDATDEDVLEEAGI 64 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEE--EecCCCHHHHHhcCC
Confidence 6999999999999999999999999999999855321 1 1233333 234455667888776
No 351
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=95.68 E-value=0.054 Score=54.65 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=27.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE 39 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~ 39 (379)
..|+|||||.+|+-+|..+.+.|. +|++++..+
T Consensus 282 k~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~ 315 (471)
T PRK12810 282 KHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP 315 (471)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEccccC
Confidence 479999999999999998888886 788766544
No 352
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=95.67 E-value=0.096 Score=56.07 Aligned_cols=33 Identities=33% Similarity=0.321 Sum_probs=30.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCc-EEEEccCC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYE-VNLYEARE 39 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~-V~viE~~~ 39 (379)
.+|+|||||.+|+-+|..+.+.|.+ |+++++++
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 4799999999999999999999997 99999875
No 353
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.61 E-value=0.016 Score=58.51 Aligned_cols=34 Identities=21% Similarity=0.230 Sum_probs=31.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
...|+|||+|++|+++|..|++.|.+|+++|+.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3479999999999999999999999999999764
No 354
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.61 E-value=0.016 Score=54.42 Aligned_cols=34 Identities=29% Similarity=0.468 Sum_probs=31.7
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~ 41 (379)
.|.|||+|..|...|..|++.|++|+++|+++..
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~ 40 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEEL 40 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 7999999999999999999999999999988644
No 355
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.53 E-value=0.016 Score=58.23 Aligned_cols=34 Identities=18% Similarity=0.281 Sum_probs=31.3
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~ 41 (379)
.|+|||.|++|+++|..|++.|++|+++|+...+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 5899999999999999999999999999988644
No 356
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=95.50 E-value=0.015 Score=57.60 Aligned_cols=38 Identities=21% Similarity=0.315 Sum_probs=30.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR 42 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~ 42 (379)
.+|||+|+|-|+.-+.+|.+|++.|.+|+.+|+++.-+
T Consensus 3 ~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYG 40 (438)
T PF00996_consen 3 EEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYG 40 (438)
T ss_dssp SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSC
T ss_pred ccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcC
Confidence 47999999999999999999999999999999998554
No 357
>KOG3923|consensus
Probab=95.50 E-value=0.016 Score=53.59 Aligned_cols=38 Identities=16% Similarity=0.262 Sum_probs=31.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhCC-------CcEEEEccCCCCCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQ-------YEVNLYEAREDIRN 43 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G-------~~V~viE~~~~~~~ 43 (379)
..+|+|||+|..||++|+.+.+.+ .+|+|++-+..+..
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T 47 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDT 47 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCcccc
Confidence 458999999999999998888854 58999988776543
No 358
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.47 E-value=0.022 Score=47.80 Aligned_cols=31 Identities=32% Similarity=0.544 Sum_probs=29.0
Q ss_pred EEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 9 VVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 9 VvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
|+|+|+|-.|+..|..|++.|.+|+++.|..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 7899999999999999999999999998764
No 359
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=95.40 E-value=0.028 Score=56.30 Aligned_cols=35 Identities=31% Similarity=0.346 Sum_probs=32.5
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~ 41 (379)
.+|+|||||+.|+-+|..|++.|.+|+++|+.+.+
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~i 201 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERV 201 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 48999999999999999999999999999988754
No 360
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=95.31 E-value=0.022 Score=56.81 Aligned_cols=99 Identities=13% Similarity=0.148 Sum_probs=71.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH 86 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 86 (379)
.+|+|||||++|+.+|..|++.|.+|+++|+.+..... ..+.....+
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-----------~~~~~~~~~---------------------- 204 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR-----------EEPSVAALA---------------------- 204 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC-----------CCHHHHHHH----------------------
Confidence 47999999999999999999999999999987643210 001100000
Q ss_pred ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141 87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVR 160 (379)
Q Consensus 87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr 160 (379)
....+..|++++++++|++++.+++.+.+.. +|++ +.+|.||.|.|+...+.
T Consensus 205 -----------------~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~--~g~~---i~~D~viva~G~~p~~~ 256 (438)
T PRK07251 205 -----------------KQYMEEDGITFLLNAHTTEVKNDGDQVLVVT--EDET---YRFDALLYATGRKPNTE 256 (438)
T ss_pred -----------------HHHHHHcCCEEEcCCEEEEEEecCCEEEEEE--CCeE---EEcCEEEEeeCCCCCcc
Confidence 1111235899999999999987666666553 5665 99999999999987643
No 361
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.25 E-value=0.021 Score=54.29 Aligned_cols=33 Identities=42% Similarity=0.671 Sum_probs=31.0
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARED 40 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~ 40 (379)
+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 699999999999999999999999999998863
No 362
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.22 E-value=0.026 Score=53.03 Aligned_cols=33 Identities=30% Similarity=0.584 Sum_probs=30.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
..|.|||+|..|...|..|+++|++|+++|+++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 369999999999999999999999999999775
No 363
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.15 E-value=0.028 Score=52.90 Aligned_cols=34 Identities=29% Similarity=0.389 Sum_probs=31.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
...|.|||+|..|...|..|+++|++|+++|+++
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 3479999999999999999999999999999875
No 364
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.15 E-value=0.042 Score=46.76 Aligned_cols=32 Identities=28% Similarity=0.348 Sum_probs=29.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEc
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYE 36 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE 36 (379)
+...|+|||||.+|..-|..|.+.|.+|+||.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 45689999999999999999999999999994
No 365
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=95.13 E-value=0.12 Score=56.48 Aligned_cols=33 Identities=24% Similarity=0.259 Sum_probs=30.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
.+|+|||||.+|+-+|..+.+.|.+|+++.+++
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 479999999999999999999999999998874
No 366
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=95.13 E-value=0.055 Score=54.40 Aligned_cols=34 Identities=24% Similarity=0.213 Sum_probs=31.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
..+|+|||+|.+|+-.|..|++.+.+|+++.|..
T Consensus 204 gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 204 NEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 4579999999999999999999999999998764
No 367
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=95.12 E-value=0.027 Score=56.54 Aligned_cols=35 Identities=37% Similarity=0.586 Sum_probs=32.5
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~ 41 (379)
.+|+|||||++|+.+|..|++.|.+|+++|+.+..
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 205 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRI 205 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCC
Confidence 58999999999999999999999999999998754
No 368
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.02 E-value=0.033 Score=52.90 Aligned_cols=32 Identities=34% Similarity=0.573 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
.|.|||+|..|...|..|++.|++|+++|+++
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 69999999999999999999999999999764
No 369
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=95.01 E-value=0.032 Score=52.55 Aligned_cols=37 Identities=30% Similarity=0.287 Sum_probs=32.6
Q ss_pred CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
|+.++ .|.|||+|..|...|..|+++|++|+++|+++
T Consensus 1 ~~~~~--~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 1 MAEIK--KVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CCCcC--EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 55433 69999999999999999999999999999875
No 370
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.00 E-value=0.037 Score=52.74 Aligned_cols=34 Identities=18% Similarity=0.303 Sum_probs=31.4
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED 40 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~ 40 (379)
..|.|||+|..|...|..++.+|++|+++|..+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4699999999999999999999999999998763
No 371
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=94.91 E-value=0.034 Score=55.94 Aligned_cols=103 Identities=16% Similarity=0.207 Sum_probs=71.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH 86 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 86 (379)
.+|+|||+|++|+-+|..|++.|.+|+++|+.+..... ..+.....+
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-----------~d~~~~~~l---------------------- 213 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR-----------EEPEISAAV---------------------- 213 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc-----------cCHHHHHHH----------------------
Confidence 58999999999999999999999999999987543210 011110000
Q ss_pred ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141 87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVR 160 (379)
Q Consensus 87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr 160 (379)
....+..+++++++++|++++.+++.+.+.+..++...+ +++|.||.|.|+.+.+.
T Consensus 214 -----------------~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~-i~~D~ViiA~G~~p~~~ 269 (463)
T TIGR02053 214 -----------------EEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGE-VEADELLVATGRRPNTD 269 (463)
T ss_pred -----------------HHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceE-EEeCEEEEeECCCcCCC
Confidence 111123589999999999998776665555431222234 99999999999987654
No 372
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.90 E-value=0.034 Score=52.02 Aligned_cols=33 Identities=21% Similarity=0.396 Sum_probs=30.8
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARED 40 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~ 40 (379)
+|.|||+|..|...|..|+++|++|+++|.++.
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 699999999999999999999999999997753
No 373
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.90 E-value=0.031 Score=55.37 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=31.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED 40 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~ 40 (379)
..|.|||.|..|+.+|..|+++|++|+++|+++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 4699999999999999999999999999998764
No 374
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.88 E-value=0.035 Score=55.81 Aligned_cols=35 Identities=40% Similarity=0.563 Sum_probs=32.3
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~ 41 (379)
.+|+|||||++|+-+|..|++.|.+|+++|+.+..
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 207 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRI 207 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCc
Confidence 47999999999999999999999999999988754
No 375
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.86 E-value=0.036 Score=52.16 Aligned_cols=33 Identities=33% Similarity=0.623 Sum_probs=30.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
..|.|||+|..|...|..|+++|++|+++|+++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 369999999999999999999999999999875
No 376
>KOG3851|consensus
Probab=94.85 E-value=0.016 Score=54.13 Aligned_cols=35 Identities=31% Similarity=0.402 Sum_probs=29.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHhC-CC-cEEEEccCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKN-QY-EVNLYEARE 39 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~-G~-~V~viE~~~ 39 (379)
+++.|+|||||-+|+..|..+.+. |. +|.|+|-..
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 468999999999999999999876 43 799998665
No 377
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=94.78 E-value=0.041 Score=52.18 Aligned_cols=33 Identities=33% Similarity=0.459 Sum_probs=30.5
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
.+|+|||+|..|...|..|++.|.+|+++.|..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 369999999999999999999999999999863
No 378
>KOG1336|consensus
Probab=94.74 E-value=0.13 Score=50.72 Aligned_cols=104 Identities=15% Similarity=0.227 Sum_probs=65.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCC--cEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceee
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQY--EVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRAR 83 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~--~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~ 83 (379)
...++|||+|++|..|+..+.+.|. +++++-+....... + .+| ...
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pyd-----r--------------------~~L-------s~~ 121 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYD-----R--------------------ARL-------SKF 121 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCccc-----c--------------------hhc-------ccc
Confidence 4589999999999999999998876 45555433222100 0 000 001
Q ss_pred EEEecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCC
Q psy9141 84 MIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGA 155 (379)
Q Consensus 84 ~~~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~ 155 (379)
......+ ..... ...-+..++++++++.|+.++.....+. +. +|++ +..+.+|.|+|.
T Consensus 122 ~~~~~~~--~a~r~------~e~Yke~gIe~~~~t~v~~~D~~~K~l~--~~-~Ge~---~kys~LilATGs 179 (478)
T KOG1336|consen 122 LLTVGEG--LAKRT------PEFYKEKGIELILGTSVVKADLASKTLV--LG-NGET---LKYSKLIIATGS 179 (478)
T ss_pred eeecccc--ccccC------hhhHhhcCceEEEcceeEEeeccccEEE--eC-CCce---eecceEEEeecC
Confidence 1111111 00000 1112235899999999999988776654 45 8988 999999999999
No 379
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=94.74 E-value=0.073 Score=53.41 Aligned_cols=35 Identities=31% Similarity=0.591 Sum_probs=32.5
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~ 41 (379)
.+|+|||||+.|+-+|..|++.|.+|+++|+.+..
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 210 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRL 210 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 57999999999999999999999999999988754
No 380
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=94.73 E-value=0.055 Score=51.67 Aligned_cols=41 Identities=20% Similarity=0.496 Sum_probs=34.9
Q ss_pred CCCCCCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCCCC
Q psy9141 1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEAREDI 41 (379)
Q Consensus 1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~~ 41 (379)
|.+.+...|+|||+|-+|..+|..++..|+ +++++|.++..
T Consensus 1 ~~~~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~ 42 (321)
T PTZ00082 1 MTMIKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNI 42 (321)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCch
Confidence 554455689999999999999999999996 89999987654
No 381
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=94.72 E-value=0.16 Score=49.55 Aligned_cols=45 Identities=20% Similarity=0.259 Sum_probs=35.3
Q ss_pred hcCCCCeEEeCceEEEEEecCCeEEEEEccCC-ceeEEEeecEEEecCCCCh
Q psy9141 107 EQYPDCNIYFQHKLINLDVNSGNVTFYRTEDN-SETKITDNQLIIGADGAYS 157 (379)
Q Consensus 107 ~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G-~~~~~i~adlVV~AdG~~S 157 (379)
.+..||+|+++++|++| +++++.+.+. ++ .. ++||.||.|+|..|
T Consensus 96 l~~~gV~i~~~~~V~~i--~~~~~~v~~~-~~~~~---~~a~~vIlAtGG~s 141 (376)
T TIGR03862 96 LAEQGVQFHTRHRWIGW--QGGTLRFETP-DGQST---IEADAVVLALGGAS 141 (376)
T ss_pred HHHCCCEEEeCCEEEEE--eCCcEEEEEC-CCceE---EecCEEEEcCCCcc
Confidence 44579999999999999 3345667665 33 34 89999999999987
No 382
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.64 E-value=0.029 Score=44.04 Aligned_cols=35 Identities=26% Similarity=0.379 Sum_probs=31.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccC
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAR 38 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~ 38 (379)
.+...|+|||||.+|..-+..|.+.|.+|+|+.+.
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 45678999999999999999999999999999876
No 383
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.63 E-value=0.039 Score=53.22 Aligned_cols=33 Identities=24% Similarity=0.406 Sum_probs=31.2
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARED 40 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~ 40 (379)
+|.|||.|.+||..|..|++.|++|+.+|.++.
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~ 34 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDES 34 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 599999999999999999999999999998864
No 384
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.60 E-value=0.039 Score=51.79 Aligned_cols=33 Identities=27% Similarity=0.600 Sum_probs=30.8
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARED 40 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~ 40 (379)
.|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 699999999999999999999999999998753
No 385
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=94.58 E-value=0.28 Score=49.46 Aligned_cols=34 Identities=24% Similarity=0.233 Sum_probs=30.4
Q ss_pred CcEEEECCChHHHHHHHHHHhCCC-cEEEEccCCC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARED 40 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~ 40 (379)
..|+|||+|.+|+-+|..+.+.|. +|+|+++.+.
T Consensus 283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~ 317 (467)
T TIGR01318 283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDE 317 (467)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCc
Confidence 579999999999999999999995 7999998753
No 386
>PRK06370 mercuric reductase; Validated
Probab=94.56 E-value=0.046 Score=54.97 Aligned_cols=103 Identities=17% Similarity=0.222 Sum_probs=70.9
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH 86 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 86 (379)
.+|+|||||+.|+-+|..|++.|.+|+++|+.+..... ..+...+.+
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-----------~~~~~~~~l---------------------- 218 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR-----------EDEDVAAAV---------------------- 218 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc-----------cCHHHHHHH----------------------
Confidence 58999999999999999999999999999987643210 011110000
Q ss_pred ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHHH
Q psy9141 87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVR 160 (379)
Q Consensus 87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~vr 160 (379)
....+..|++++++++|++++.+++++.+.+..++...+ +.+|.||.|.|+...+.
T Consensus 219 -----------------~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~-i~~D~Vi~A~G~~pn~~ 274 (463)
T PRK06370 219 -----------------REILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPE-ITGSHILVAVGRVPNTD 274 (463)
T ss_pred -----------------HHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceE-EEeCEEEECcCCCcCCC
Confidence 111123589999999999998876665544321122123 99999999999887654
No 387
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=94.55 E-value=0.065 Score=51.04 Aligned_cols=40 Identities=28% Similarity=0.421 Sum_probs=34.6
Q ss_pred CCCCCCCcEEEECCChHHHHHHHHHHhCCC--cEEEEccCCC
Q psy9141 1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQY--EVNLYEARED 40 (379)
Q Consensus 1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~--~V~viE~~~~ 40 (379)
|++....+|.|||+|-+|.++|+.|+..|+ ++.++|.+..
T Consensus 1 ~~~~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~ 42 (315)
T PRK00066 1 MMKKQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE 42 (315)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence 555556799999999999999999999998 7999998653
No 388
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.52 E-value=0.047 Score=54.93 Aligned_cols=35 Identities=29% Similarity=0.407 Sum_probs=32.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~ 41 (379)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+..
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~ 207 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRA 207 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 48999999999999999999999999999987644
No 389
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=94.48 E-value=0.048 Score=51.43 Aligned_cols=30 Identities=20% Similarity=0.336 Sum_probs=28.8
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEA 37 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~ 37 (379)
+|+|||+|..|.++|..|++.|++|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 599999999999999999999999999987
No 390
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=94.47 E-value=0.052 Score=52.20 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=29.4
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccC
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAR 38 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~ 38 (379)
+|.|||+|..|...|..|+++|++|+++++.
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 6999999999999999999999999999874
No 391
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=94.45 E-value=0.05 Score=51.26 Aligned_cols=32 Identities=28% Similarity=0.505 Sum_probs=29.8
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
.|+|||+|-.|..+|..|++.|++|+++++++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 49999999999999999999999999999853
No 392
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.36 E-value=0.075 Score=47.32 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=30.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAR 38 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~ 38 (379)
+...|+|||||.+|..-+..|.+.|.+|+|++..
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4458999999999999999999999999999754
No 393
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=94.35 E-value=0.054 Score=51.38 Aligned_cols=39 Identities=23% Similarity=0.233 Sum_probs=32.9
Q ss_pred CCCCCCCcEEEECCChHHHHHHHHHHhCCC--cEEEEccCC
Q psy9141 1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQY--EVNLYEARE 39 (379)
Q Consensus 1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~--~V~viE~~~ 39 (379)
|+.+....|.|||+|..|.++|..|++.|+ +|+++++++
T Consensus 1 ~~~~~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 1 MSAPLFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred CCccCCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 665444689999999999999999999985 899998764
No 394
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=94.35 E-value=0.047 Score=45.23 Aligned_cols=32 Identities=28% Similarity=0.402 Sum_probs=28.2
Q ss_pred EEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141 9 VVIVGGGLVGSLSACMFAKNQYEVNLYEARED 40 (379)
Q Consensus 9 VvIVGaGpaGl~~A~~La~~G~~V~viE~~~~ 40 (379)
++|+|+|+.+.++|..++..|++|+|+|.++.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999998865
No 395
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.34 E-value=0.67 Score=48.84 Aligned_cols=33 Identities=21% Similarity=0.216 Sum_probs=29.5
Q ss_pred CcEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE 39 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~ 39 (379)
.+|+|||||.+|+-+|..+.+.|. +|+++.+++
T Consensus 469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~ 502 (654)
T PRK12769 469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD 502 (654)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence 479999999999999999999996 699998775
No 396
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=94.25 E-value=0.067 Score=47.44 Aligned_cols=35 Identities=26% Similarity=0.257 Sum_probs=32.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE 39 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~ 39 (379)
++..|+|||+|-.|...|..|++.|+ +++++|.+.
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 45789999999999999999999999 699999884
No 397
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=94.20 E-value=0.072 Score=49.38 Aligned_cols=37 Identities=24% Similarity=0.356 Sum_probs=32.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCCCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEAREDI 41 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~~ 41 (379)
+...|+|||+|-+|..+|-.|++.|+ +++|+|.+...
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~ 66 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVC 66 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEec
Confidence 45789999999999999999999996 89999977643
No 398
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=94.19 E-value=0.52 Score=51.64 Aligned_cols=33 Identities=30% Similarity=0.313 Sum_probs=29.4
Q ss_pred CcEEEECCChHHHHHHHHHHhC-CC-cEEEEccCC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKN-QY-EVNLYEARE 39 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~-G~-~V~viE~~~ 39 (379)
.+|+|||||.+|+-+|..+.+. |. +|++++++.
T Consensus 667 K~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 667 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 4799999999999999998886 85 799999875
No 399
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.16 E-value=0.067 Score=51.22 Aligned_cols=32 Identities=28% Similarity=0.438 Sum_probs=30.3
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
.|.|||+|..|...|..|++.|++|+++++++
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 69999999999999999999999999999864
No 400
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.14 E-value=0.087 Score=46.81 Aligned_cols=34 Identities=35% Similarity=0.391 Sum_probs=30.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEA 37 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~ 37 (379)
.+...|+|||||-+|...|..|.+.|.+|+|+++
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISP 41 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence 3456899999999999999999999999999974
No 401
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.13 E-value=0.054 Score=44.68 Aligned_cols=36 Identities=31% Similarity=0.359 Sum_probs=31.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCCCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEAREDI 41 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~~ 41 (379)
+..|+|||+|-.|..+|..|++.|. +++|+|.+...
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~ 38 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVE 38 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCccee
Confidence 4579999999999999999999999 79999987643
No 402
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=94.05 E-value=0.07 Score=45.87 Aligned_cols=35 Identities=29% Similarity=0.288 Sum_probs=30.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
++..|+|+|+|.+|..+|..|...|.+|+++|..+
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 35789999999999999999999999999999775
No 403
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=93.98 E-value=0.068 Score=50.89 Aligned_cols=32 Identities=25% Similarity=0.479 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
+|.|||+|..|...|..|++.|++|+++++.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 69999999999999999999999999998764
No 404
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=93.93 E-value=0.08 Score=53.84 Aligned_cols=35 Identities=31% Similarity=0.451 Sum_probs=32.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~ 41 (379)
..|.|||+|..|...|..|+++|++|+++|+++..
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~ 42 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGA 42 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 46999999999999999999999999999988754
No 405
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=93.91 E-value=0.51 Score=51.61 Aligned_cols=33 Identities=30% Similarity=0.297 Sum_probs=29.1
Q ss_pred CcEEEECCChHHHHHHHHHHhC-C-CcEEEEccCC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKN-Q-YEVNLYEARE 39 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~-G-~~V~viE~~~ 39 (379)
.+|+|||||.+|+-+|..+.+. | .+|+++.+++
T Consensus 669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~ 703 (1019)
T PRK09853 669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 703 (1019)
T ss_pred CEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence 4799999999999999998887 5 4899999875
No 406
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.89 E-value=0.083 Score=42.03 Aligned_cols=32 Identities=25% Similarity=0.363 Sum_probs=28.8
Q ss_pred EEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141 9 VVIVGGGLVGSLSACMFAKNQYEVNLYEARED 40 (379)
Q Consensus 9 VvIVGaGpaGl~~A~~La~~G~~V~viE~~~~ 40 (379)
|+|+|.|..|..+|..|.+.+.+|+++|+++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 79999999999999999998889999999873
No 407
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.87 E-value=0.08 Score=50.28 Aligned_cols=33 Identities=33% Similarity=0.494 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHHHhCCC--cEEEEccCCC
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQY--EVNLYEARED 40 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~--~V~viE~~~~ 40 (379)
+|.|||+|.+|.++|+.|++.|+ +++++|++..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~ 36 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA 36 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence 59999999999999999999994 8999998753
No 408
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=93.82 E-value=0.31 Score=47.48 Aligned_cols=106 Identities=17% Similarity=0.134 Sum_probs=65.1
Q ss_pred EEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141 9 VVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH 86 (379)
Q Consensus 9 VvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 86 (379)
++|||+|++|+.+|..|.+. +.+++++.+.+...... .+ + ...+............
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~--~~------~-------------~~~~~~~~~~~~~~~~- 58 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYR--CP------L-------------SLYVGGGIASLEDLRY- 58 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCC--Cc------c-------------chHHhcccCCHHHhcc-
Confidence 58999999999999998885 45788777765443210 00 0 0000000000000000
Q ss_pred ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCCCChHH
Q psy9141 87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGV 159 (379)
Q Consensus 87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~v 159 (379)
. .+ . . ...++.++.+++|+++......+... +| . +..|.+|.|+|.....
T Consensus 59 ~-------~~---~-----~-~~~~i~~~~~~~v~~id~~~~~v~~~---~g-~---~~yd~LvlatGa~~~~ 108 (415)
T COG0446 59 P-------PR---F-----N-RATGIDVRTGTEVTSIDPENKVVLLD---DG-E---IEYDYLVLATGARPRP 108 (415)
T ss_pred c-------ch---h-----H-HhhCCEEeeCCEEEEecCCCCEEEEC---CC-c---ccccEEEEcCCCcccC
Confidence 0 00 1 1 23588999999999998777665544 67 4 8999999999988654
No 409
>PRK06116 glutathione reductase; Validated
Probab=93.81 E-value=0.082 Score=52.93 Aligned_cols=35 Identities=23% Similarity=0.293 Sum_probs=32.3
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~ 41 (379)
.+|+|||+|++|+-+|..|++.|.+|+++++.+..
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 202 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAP 202 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 57999999999999999999999999999987644
No 410
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=93.80 E-value=0.085 Score=51.47 Aligned_cols=35 Identities=29% Similarity=0.390 Sum_probs=31.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
...+|+|||+|.+|+.+|..|.+.|.+|+++|+++
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 45679999999999999999999999999999874
No 411
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=93.72 E-value=0.085 Score=52.78 Aligned_cols=35 Identities=31% Similarity=0.390 Sum_probs=32.1
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~ 41 (379)
.+|+|||+|++|+-+|..|++.|.+|+++|+.+..
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~ 201 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELI 201 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCC
Confidence 47999999999999999999999999999987654
No 412
>PLN02507 glutathione reductase
Probab=93.70 E-value=0.084 Score=53.67 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=32.1
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~ 41 (379)
.+|+|||||+.|+-+|..|++.|.+|+|+++.+.+
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~ 238 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELP 238 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCc
Confidence 47999999999999999999999999999987644
No 413
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=93.70 E-value=0.082 Score=52.09 Aligned_cols=34 Identities=26% Similarity=0.188 Sum_probs=31.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
...|+|+|+|+.|+.+|..++..|.+|+++|.++
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 3579999999999999999999999999999875
No 414
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=93.65 E-value=0.093 Score=52.38 Aligned_cols=35 Identities=34% Similarity=0.452 Sum_probs=32.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~ 41 (379)
.+|+|||+|+.|+-+|..|++.|.+|+++|+.+..
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 193 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLF 193 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 47999999999999999999999999999987644
No 415
>PRK04148 hypothetical protein; Provisional
Probab=93.56 E-value=0.073 Score=43.83 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=30.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED 40 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~ 40 (379)
..|++||.| .|...|..|++.|++|+.+|.++.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 469999999 999999999999999999997763
No 416
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=93.55 E-value=0.1 Score=50.14 Aligned_cols=37 Identities=22% Similarity=0.338 Sum_probs=33.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCCCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEAREDI 41 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~~ 41 (379)
+...|+|||+|-.|..+|..|++.|+ +++|+|.+...
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve 60 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVE 60 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccc
Confidence 45689999999999999999999998 89999988633
No 417
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.45 E-value=0.085 Score=53.39 Aligned_cols=35 Identities=17% Similarity=0.327 Sum_probs=31.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED 40 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~ 40 (379)
...|+|+|+|++|+.++..+...|.+|+++|.++.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~ 199 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE 199 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 56899999999999999999999999999998763
No 418
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.40 E-value=0.093 Score=50.17 Aligned_cols=32 Identities=25% Similarity=0.470 Sum_probs=29.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
+|.|||+|-.|.++|..|++.|++|++++|+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 49999999999999999999999999998864
No 419
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=93.33 E-value=0.088 Score=52.12 Aligned_cols=33 Identities=24% Similarity=0.347 Sum_probs=30.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARED 40 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~ 40 (379)
+|.|||.|..|+.+|..|++.|++|+++|+++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 599999999999999999999999999998764
No 420
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=93.33 E-value=0.87 Score=47.10 Aligned_cols=50 Identities=14% Similarity=0.252 Sum_probs=38.5
Q ss_pred cCCCCeEEeCceEEEEEecCCeEE---EE-EccCCceeEEEeecEEEecCCCChHH
Q psy9141 108 QYPDCNIYFQHKLINLDVNSGNVT---FY-RTEDNSETKITDNQLIIGADGAYSGV 159 (379)
Q Consensus 108 ~~~gv~i~~~~~v~~i~~~~~~v~---v~-~~~~G~~~~~i~adlVV~AdG~~S~v 159 (379)
...+++|+.++.++++..+++.+. +. .. +|+... +.|+-||.|+|.++.+
T Consensus 130 ~~~gi~i~~~~~~~~Li~~~g~v~Ga~~~~~~-~g~~~~-i~AkaVILATGG~~~~ 183 (565)
T TIGR01816 130 LKADTSFFNEYFALDLLMEDGECRGVIAYCLE-TGEIHR-FRAKAVVLATGGYGRI 183 (565)
T ss_pred HhCCCEEEeccEEEEEEeeCCEEEEEEEEEcC-CCcEEE-EEeCeEEECCCCcccc
Confidence 346899999999999887666443 22 23 677666 8999999999999853
No 421
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=93.27 E-value=1.7 Score=41.23 Aligned_cols=96 Identities=18% Similarity=0.176 Sum_probs=68.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEEE
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMIH 86 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 86 (379)
.+|+|||||-+.+--|+.|++.+-+|+++=|++..+.. +..+
T Consensus 144 k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra~-------------~~~~------------------------- 185 (305)
T COG0492 144 KDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRAE-------------EILV------------------------- 185 (305)
T ss_pred CeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCcC-------------HHHH-------------------------
Confidence 49999999999999999999999999999988755421 1110
Q ss_pred ecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecC-CeEEEEEccCCceeEEEeecEEEecCCCChHH
Q psy9141 87 GQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNS-GNVTFYRTEDNSETKITDNQLIIGADGAYSGV 159 (379)
Q Consensus 87 ~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~v~v~~~~~G~~~~~i~adlVV~AdG~~S~v 159 (379)
+++.+.+++.+++++.++++.-++ .++++... .|++.+ +..|-|..+-|.....
T Consensus 186 -----------------~~l~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~-~~~~~~-~~~~gvf~~iG~~p~~ 240 (305)
T COG0492 186 -----------------ERLKKNVKIEVLTNTVVKEILGDDVEGVVLKNV-KGEEKE-LPVDGVFIAIGHLPNT 240 (305)
T ss_pred -----------------HHHHhcCCeEEEeCCceeEEecCccceEEEEec-CCceEE-EEeceEEEecCCCCch
Confidence 112222367888888888887665 44555533 255555 8888888888877654
No 422
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=93.25 E-value=0.13 Score=48.68 Aligned_cols=32 Identities=25% Similarity=0.564 Sum_probs=29.4
Q ss_pred cEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE 39 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~ 39 (379)
.|.|||+|..|...|..|+..|+ +|+++|...
T Consensus 3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred EEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 69999999999999999999887 899999854
No 423
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=93.14 E-value=0.16 Score=42.30 Aligned_cols=32 Identities=38% Similarity=0.554 Sum_probs=29.3
Q ss_pred cEEEECC-ChHHHHHHHHHHhCCC--cEEEEccCC
Q psy9141 8 SVVIVGG-GLVGSLSACMFAKNQY--EVNLYEARE 39 (379)
Q Consensus 8 dVvIVGa-GpaGl~~A~~La~~G~--~V~viE~~~ 39 (379)
+|.|||+ |.+|.++|+.|...++ ++.++|...
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 5999999 9999999999999976 799999875
No 424
>PRK06223 malate dehydrogenase; Reviewed
Probab=93.12 E-value=0.14 Score=48.52 Aligned_cols=33 Identities=30% Similarity=0.536 Sum_probs=29.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCC-cEEEEccCCC
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQY-EVNLYEARED 40 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~ 40 (379)
+|+|||+|..|..+|..++..|+ +|.++|..+.
T Consensus 4 KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 4 KISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 79999999999999999999876 9999998653
No 425
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=93.12 E-value=0.15 Score=45.20 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=33.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCCC
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARED 40 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~ 40 (379)
..+..|+|||+|-.|..+|..|++.|. +++++|.+..
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~v 56 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHV 56 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEE
Confidence 346789999999999999999999998 8999998753
No 426
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=93.11 E-value=0.11 Score=44.29 Aligned_cols=32 Identities=34% Similarity=0.503 Sum_probs=28.7
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
+|.|||-|-.|...|..|.++|++|.++|+.+
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred EEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 79999999999999999999999999999885
No 427
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=93.08 E-value=0.17 Score=43.48 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=30.9
Q ss_pred CCCCcEEEECCCh-HHHHHHHHHHhCCCcEEEEccC
Q psy9141 4 NSKKSVVIVGGGL-VGSLSACMFAKNQYEVNLYEAR 38 (379)
Q Consensus 4 m~~~dVvIVGaGp-aGl~~A~~La~~G~~V~viE~~ 38 (379)
....+|+|||+|- +|..+|..|.+.|.+|+++.|.
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 3457899999995 6999999999999999999876
No 428
>KOG1346|consensus
Probab=93.06 E-value=0.22 Score=48.38 Aligned_cols=96 Identities=25% Similarity=0.325 Sum_probs=0.0
Q ss_pred cEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHHHhCCCCceeeEE
Q psy9141 8 SVVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIPMRARMI 85 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l~~~~~~~~~~~~ 85 (379)
.|.|||+|.-|.-+|+.|++. ...+-|+---++.... +.-.--.|+.++++-+++
T Consensus 349 siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm----~kiLPeyls~wt~ekir~------------------- 405 (659)
T KOG1346|consen 349 SITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNM----EKILPEYLSQWTIEKIRK------------------- 405 (659)
T ss_pred eEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCCh----hhhhHHHHHHHHHHHHHh-------------------
Q ss_pred EecCCcEEEeeCCCCCcHHHHhcCCCCeEEeCceEEEEEecCCeEEEEEccCCceeEEEeecEEEecCC
Q psy9141 86 HGQNGKLREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADG 154 (379)
Q Consensus 86 ~~~~g~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~G~~~~~i~adlVV~AdG 154 (379)
.||.++-+..|.++......+.+.+. ||.+ ++.|+||.|.|
T Consensus 406 ------------------------~GV~V~pna~v~sv~~~~~nl~lkL~-dG~~---l~tD~vVvavG 446 (659)
T KOG1346|consen 406 ------------------------GGVDVRPNAKVESVRKCCKNLVLKLS-DGSE---LRTDLVVVAVG 446 (659)
T ss_pred ------------------------cCceeccchhhhhhhhhccceEEEec-CCCe---eeeeeEEEEec
No 429
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=93.04 E-value=0.19 Score=41.44 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=31.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCc-EEEEccCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYE-VNLYEARE 39 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~-V~viE~~~ 39 (379)
+...|+|||+|-+|-+++..|+..|.+ |+|+-|..
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 456899999999999999999999987 99998763
No 430
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=92.96 E-value=0.12 Score=51.97 Aligned_cols=33 Identities=21% Similarity=0.373 Sum_probs=29.7
Q ss_pred cEEEECCChHHHHHHHHHHhC--CCcEEEEccCCC
Q psy9141 8 SVVIVGGGLVGSLSACMFAKN--QYEVNLYEARED 40 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~ 40 (379)
.|.|||.|.+|+.+|..|++. |++|+.+|.++.
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 599999999999999999988 578999998764
No 431
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=92.92 E-value=1.2 Score=49.27 Aligned_cols=33 Identities=24% Similarity=0.189 Sum_probs=28.9
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCc-EEEEccCC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYE-VNLYEARE 39 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~-V~viE~~~ 39 (379)
.+|+|||||.+|+-+|..+.+.|.+ |+++.++.
T Consensus 572 k~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~ 605 (1006)
T PRK12775 572 KSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRS 605 (1006)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecC
Confidence 5899999999999999999999984 77887664
No 432
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=92.83 E-value=0.28 Score=50.18 Aligned_cols=35 Identities=31% Similarity=0.394 Sum_probs=29.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED 40 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~ 40 (379)
..+|+|||+|.+|+=.|..|++...+|.+.-|+..
T Consensus 183 gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~ 217 (531)
T PF00743_consen 183 GKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGA 217 (531)
T ss_dssp TSEEEEESSSHHHHHHHHHHTTTSCCEEEECC---
T ss_pred CCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccc
Confidence 45899999999999999999999999999888753
No 433
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=92.77 E-value=0.17 Score=46.39 Aligned_cols=35 Identities=29% Similarity=0.367 Sum_probs=32.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED 40 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~ 40 (379)
...++|+|||+.+..+|..++..|++|+|+|.++.
T Consensus 100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 46899999999999999999999999999997765
No 434
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=92.72 E-value=0.18 Score=46.24 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=32.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARED 40 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~ 40 (379)
++..|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~v 67 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTV 67 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 35689999999999999999999998 7999997753
No 435
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=92.69 E-value=0.15 Score=51.71 Aligned_cols=33 Identities=21% Similarity=0.483 Sum_probs=31.0
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARED 40 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~ 40 (379)
.|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~ 38 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHPE 38 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 699999999999999999999999999998753
No 436
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=92.66 E-value=0.18 Score=46.01 Aligned_cols=37 Identities=22% Similarity=0.250 Sum_probs=32.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCCCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEAREDI 41 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~~ 41 (379)
+...|+|||+|-.|..+|..|++.|. +++++|.+...
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve 60 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVS 60 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCccc
Confidence 45789999999999999999999998 79999977633
No 437
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=92.66 E-value=0.17 Score=48.73 Aligned_cols=35 Identities=26% Similarity=0.481 Sum_probs=32.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE 39 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~ 39 (379)
+...|+|||+|-.|..+|..|++.|. +++|+|.+.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 45689999999999999999999999 899999875
No 438
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=92.65 E-value=0.13 Score=48.10 Aligned_cols=32 Identities=28% Similarity=0.227 Sum_probs=29.7
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
.|.|||.|..|.++|..|++.|++|+++++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 59999999999999999999999999998764
No 439
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=92.61 E-value=0.18 Score=45.12 Aligned_cols=35 Identities=29% Similarity=0.330 Sum_probs=31.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE 39 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~ 39 (379)
+...|+|||+|-.|..+|..|++.|. +++++|.+.
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 45789999999999999999999999 599999875
No 440
>PRK07326 short chain dehydrogenase; Provisional
Probab=92.55 E-value=0.2 Score=45.01 Aligned_cols=39 Identities=23% Similarity=0.271 Sum_probs=32.7
Q ss_pred CCCCCCCcEEEECC-ChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 1 MKCNSKKSVVIVGG-GLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 1 M~~m~~~dVvIVGa-GpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
|+.|...-|+|+|| |..|..+|..|+++|.+|+++.|++
T Consensus 1 m~~~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~ 40 (237)
T PRK07326 1 MMSLKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQ 40 (237)
T ss_pred CCCCCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCH
Confidence 44444567999985 9999999999999999999998764
No 441
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.51 E-value=0.21 Score=49.90 Aligned_cols=37 Identities=27% Similarity=0.328 Sum_probs=32.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED 40 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~ 40 (379)
+....|+|+|.|.+|+++|..|++.|.+|++.|..+.
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 3345799999999999999999999999999997653
No 442
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.50 E-value=0.21 Score=47.42 Aligned_cols=35 Identities=29% Similarity=0.432 Sum_probs=32.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED 40 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~ 40 (379)
..+|.|||+|-.|.++|..|++.|++|++++|+..
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~ 38 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG 38 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 34799999999999999999999999999998764
No 443
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=92.46 E-value=0.18 Score=49.17 Aligned_cols=33 Identities=30% Similarity=0.524 Sum_probs=31.0
Q ss_pred cEEEECCChHHHHHHHHHHhCC-CcEEEEccCCC
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQ-YEVNLYEARED 40 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G-~~V~viE~~~~ 40 (379)
+|+|||||-+|..+|..|+++| .+|+|.+|...
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~ 36 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKE 36 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCCceEEEEeCCHH
Confidence 7999999999999999999999 89999999853
No 444
>KOG2304|consensus
Probab=92.44 E-value=0.14 Score=45.64 Aligned_cols=36 Identities=42% Similarity=0.440 Sum_probs=32.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~ 41 (379)
...|.|||||.-|.-.|...+..|++|.++|++...
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~a 46 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDA 46 (298)
T ss_pred ccceEEEcccccchhHHHHHHhcCCceEEecCCHHH
Confidence 358999999999999999999999999999988643
No 445
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=92.37 E-value=0.2 Score=45.31 Aligned_cols=35 Identities=26% Similarity=0.363 Sum_probs=31.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE 39 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~ 39 (379)
++..|+|||+|-.|...|..|++.|. +++|+|.+.
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 45789999999999999999999998 799999775
No 446
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=92.22 E-value=0.17 Score=48.89 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=26.6
Q ss_pred cEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE 39 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~ 39 (379)
.|+|+|+||.||+++..++..|. +|+++|+.+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~ 203 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP 203 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH
Confidence 59999999999999888888886 566766554
No 447
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=92.15 E-value=0.22 Score=49.01 Aligned_cols=35 Identities=26% Similarity=0.126 Sum_probs=32.1
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED 40 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~ 40 (379)
...|+|+|.|+.|..+|..|+..|.+|+++|.++.
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~ 229 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI 229 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence 45899999999999999999999999999998764
No 448
>PRK07774 short chain dehydrogenase; Provisional
Probab=92.05 E-value=0.26 Score=44.61 Aligned_cols=39 Identities=21% Similarity=0.260 Sum_probs=33.7
Q ss_pred CCCCCCCcEEEECC-ChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 1 MKCNSKKSVVIVGG-GLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 1 M~~m~~~dVvIVGa-GpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
|..++...++|.|| |-.|..+|..|++.|.+|++++|..
T Consensus 1 ~~~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~ 40 (250)
T PRK07774 1 MGRFDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINA 40 (250)
T ss_pred CcccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 55555567999998 9999999999999999999998764
No 449
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=92.04 E-value=0.25 Score=42.78 Aligned_cols=32 Identities=28% Similarity=0.367 Sum_probs=29.6
Q ss_pred cEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE 39 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~ 39 (379)
.|+|||+|-.|...|..|++.|. +++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 48999999999999999999999 599999876
No 450
>KOG2495|consensus
Probab=92.02 E-value=0.068 Score=51.98 Aligned_cols=84 Identities=26% Similarity=0.386 Sum_probs=0.0
Q ss_pred cEEEECCChHHHHHHHHHHh--------------CCCcEEEEccCCCCCCCCCCCCcccccccCHHHHHHHHHCCChHHH
Q psy9141 8 SVVIVGGGLVGSLSACMFAK--------------NQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIGLEDKL 73 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~--------------~G~~V~viE~~~~~~~~~~~~g~~i~~al~~~~~~~l~~lGl~~~l 73 (379)
.++||||||+|.-+|.+|+. .-++|+++|..+..-.. ++-+ +..-+...+.+.|+.-..
T Consensus 220 h~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~m--Fdkr-----l~~yae~~f~~~~I~~~~ 292 (491)
T KOG2495|consen 220 HFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNM--FDKR-----LVEYAENQFVRDGIDLDT 292 (491)
T ss_pred EEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHH--HHHH-----HHHHHHHHhhhccceeec
Q ss_pred HhC--CCCceeeEEEecCCcEEEeeCC
Q psy9141 74 LAH--GIPMRARMIHGQNGKLREIPYD 98 (379)
Q Consensus 74 ~~~--~~~~~~~~~~~~~g~~~~~~~~ 98 (379)
... ...-..+..-..+|....+||+
T Consensus 293 ~t~Vk~V~~~~I~~~~~~g~~~~iPYG 319 (491)
T KOG2495|consen 293 GTMVKKVTEKTIHAKTKDGEIEEIPYG 319 (491)
T ss_pred ccEEEeecCcEEEEEcCCCceeeecce
No 451
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=91.98 E-value=0.2 Score=50.93 Aligned_cols=35 Identities=29% Similarity=0.437 Sum_probs=32.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~ 41 (379)
..|.|||+|.-|...|..|+++|++|+++|+++..
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~ 40 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEA 40 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 46999999999999999999999999999988644
No 452
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.95 E-value=0.24 Score=49.49 Aligned_cols=35 Identities=20% Similarity=0.285 Sum_probs=31.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
....|+|+|+|.+|.++|..|++.|.+|++.|++.
T Consensus 4 ~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 4 QNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 34579999999999999999999999999999765
No 453
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.86 E-value=0.37 Score=46.75 Aligned_cols=54 Identities=15% Similarity=0.178 Sum_probs=43.0
Q ss_pred CCCCeEEeCceEEEEEecCCe-EEEEEc--cCCceeEEEeecEEEecCCCChHHHHHh
Q psy9141 109 YPDCNIYFQHKLINLDVNSGN-VTFYRT--EDNSETKITDNQLIIGADGAYSGVRKCL 163 (379)
Q Consensus 109 ~~gv~i~~~~~v~~i~~~~~~-v~v~~~--~~G~~~~~i~adlVV~AdG~~S~vr~~l 163 (379)
.+++.++.+++|++++..+++ +.+.+. ..|+..+ ++.|.||.|+|-+-.+..++
T Consensus 290 ~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t-~~~D~vIlATGY~~~~P~fL 346 (436)
T COG3486 290 KPDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELET-VETDAVILATGYRRAVPSFL 346 (436)
T ss_pred CCCeeeccccceeeeecCCCceEEEEEeeccCCCceE-EEeeEEEEecccccCCchhh
Confidence 578999999999999998876 666543 1456566 99999999999986666665
No 454
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=91.83 E-value=0.29 Score=40.65 Aligned_cols=34 Identities=26% Similarity=0.283 Sum_probs=30.5
Q ss_pred cEEEECCChHHHHHHHHHHhCCC-cEEEEccCCCC
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQY-EVNLYEAREDI 41 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~~ 41 (379)
.|+|||+|-.|...|..|++.|. +++++|.+...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~ 35 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVE 35 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcC
Confidence 48999999999999999999998 79999977533
No 455
>PRK08328 hypothetical protein; Provisional
Probab=91.79 E-value=0.27 Score=44.58 Aligned_cols=35 Identities=29% Similarity=0.354 Sum_probs=31.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE 39 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~ 39 (379)
++..|+|||+|-.|..+|..|++.|. +++|+|.+.
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 35689999999999999999999998 699998765
No 456
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=91.71 E-value=0.18 Score=49.42 Aligned_cols=33 Identities=24% Similarity=0.316 Sum_probs=29.5
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~ 41 (379)
.|.|||.|..|+.+|..++. |++|+++|+++..
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~k 34 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPSR 34 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHH
Confidence 49999999999999988885 9999999988743
No 457
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=91.71 E-value=0.23 Score=42.20 Aligned_cols=35 Identities=29% Similarity=0.210 Sum_probs=28.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED 40 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~ 40 (379)
-..++|+|-|.+|-.+|..|+..|.+|+|.|.+|.
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi 57 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPI 57 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHH
T ss_pred CCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChH
Confidence 35799999999999999999999999999999873
No 458
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=91.70 E-value=0.24 Score=46.95 Aligned_cols=34 Identities=35% Similarity=0.455 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHHHhCC--CcEEEEccCCCC
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQ--YEVNLYEAREDI 41 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G--~~V~viE~~~~~ 41 (379)
.|+|||+|-+|.++|..|+..| .+++++|++...
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~ 37 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEK 37 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcch
Confidence 5999999999999999999999 479999997643
No 459
>PRK08703 short chain dehydrogenase; Provisional
Probab=91.70 E-value=0.29 Score=44.09 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=34.3
Q ss_pred CCCCCCCcEEEECC-ChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 1 MKCNSKKSVVIVGG-GLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 1 M~~m~~~dVvIVGa-GpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
|.+|+...|+|.|| |-.|..+|..|+++|.+|+++.|+.
T Consensus 1 ~~~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~ 40 (239)
T PRK08703 1 MATLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQ 40 (239)
T ss_pred CCCCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence 66676678999995 7889999999999999999999876
No 460
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=91.61 E-value=0.35 Score=42.88 Aligned_cols=35 Identities=20% Similarity=0.157 Sum_probs=31.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccC
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAR 38 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~ 38 (379)
++...|+|+|.|-.|..+|..|.+.|.+|+++|++
T Consensus 26 l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 26 LEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 34567999999999999999999999999999865
No 461
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=91.60 E-value=0.28 Score=46.93 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=35.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR 42 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~ 42 (379)
..|||+|+|-|+.=+.++..|+..|.+|+.||+++.-+
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG 42 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYG 42 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccC
Confidence 36999999999999999999999999999999998554
No 462
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=91.57 E-value=0.23 Score=46.92 Aligned_cols=31 Identities=32% Similarity=0.502 Sum_probs=28.7
Q ss_pred EEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141 9 VVIVGGGLVGSLSACMFAKNQY-EVNLYEARE 39 (379)
Q Consensus 9 VvIVGaGpaGl~~A~~La~~G~-~V~viE~~~ 39 (379)
|.|||+|-+|..+|..|+..|+ +|+++|.++
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 6899999999999999999887 999999885
No 463
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.54 E-value=0.3 Score=46.43 Aligned_cols=34 Identities=29% Similarity=0.383 Sum_probs=30.6
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCC--cEEEEccCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQY--EVNLYEARE 39 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~--~V~viE~~~ 39 (379)
+..|.|||+|-+|.++|+.|+..|+ ++.|+|...
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 4589999999999999999999887 799999875
No 464
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=91.47 E-value=0.33 Score=44.31 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=32.9
Q ss_pred CCCCCCCcEEEECC-ChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 1 MKCNSKKSVVIVGG-GLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 1 M~~m~~~dVvIVGa-GpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
|+++....|+|.|| |-.|..+|..|+++|++|++++++.
T Consensus 1 ~~~l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~ 40 (257)
T PRK07067 1 MMRLQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKP 40 (257)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCH
Confidence 55444567999996 8889999999999999999998765
No 465
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=91.44 E-value=0.3 Score=46.12 Aligned_cols=35 Identities=17% Similarity=0.163 Sum_probs=32.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
....|+|||.|.+|..+|..|++.|.+|+++++++
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 35689999999999999999999999999999885
No 466
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=91.40 E-value=0.3 Score=48.29 Aligned_cols=36 Identities=28% Similarity=0.126 Sum_probs=32.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~ 41 (379)
...|+|+|.|..|..+|..|+..|.+|+++|+++..
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~r 247 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPIC 247 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchh
Confidence 457999999999999999999999999999988643
No 467
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=91.36 E-value=0.33 Score=44.04 Aligned_cols=36 Identities=28% Similarity=0.313 Sum_probs=32.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARED 40 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~ 40 (379)
++..|+|||.|-.|..+|..|++.|. +++|+|.+..
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V 46 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVV 46 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEE
Confidence 45789999999999999999999998 8999997763
No 468
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=91.28 E-value=0.32 Score=43.03 Aligned_cols=35 Identities=11% Similarity=0.198 Sum_probs=31.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE 39 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~ 39 (379)
+...|+|||+|..|+..|..|++.|. +++++|.+.
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 35689999999999999999999999 699999775
No 469
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=91.27 E-value=0.29 Score=43.91 Aligned_cols=32 Identities=19% Similarity=0.168 Sum_probs=29.1
Q ss_pred cEEEEC-CChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 8 SVVIVG-GGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 8 dVvIVG-aGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
+|.||| +|..|.++|..|++.|++|+++++++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 499997 79999999999999999999998764
No 470
>PRK08264 short chain dehydrogenase; Validated
Probab=91.24 E-value=0.38 Score=43.23 Aligned_cols=40 Identities=15% Similarity=0.071 Sum_probs=33.7
Q ss_pred CCCCCCCcEEEECC-ChHHHHHHHHHHhCCC-cEEEEccCCC
Q psy9141 1 MKCNSKKSVVIVGG-GLVGSLSACMFAKNQY-EVNLYEARED 40 (379)
Q Consensus 1 M~~m~~~dVvIVGa-GpaGl~~A~~La~~G~-~V~viE~~~~ 40 (379)
|+++....|+|+|| |-.|..+|..|+++|. +|+++.|...
T Consensus 1 ~~~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~ 42 (238)
T PRK08264 1 MMDIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPE 42 (238)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChh
Confidence 44455567999995 9999999999999999 9999998754
No 471
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=91.18 E-value=0.28 Score=46.22 Aligned_cols=32 Identities=19% Similarity=0.395 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
+|.|||.|..|...|..|+++|++|+++++++
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~ 34 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP 34 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 69999999999999999999999999999875
No 472
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.14 E-value=0.28 Score=48.64 Aligned_cols=34 Identities=24% Similarity=0.221 Sum_probs=31.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
...|+|||-|-.|.++|..|.+.|.+|+++|++.
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~ 36 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSL 36 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3479999999999999999999999999999764
No 473
>PRK08265 short chain dehydrogenase; Provisional
Probab=91.08 E-value=0.38 Score=44.14 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=34.4
Q ss_pred CCCCCCCcEEEECC-ChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141 1 MKCNSKKSVVIVGG-GLVGSLSACMFAKNQYEVNLYEARED 40 (379)
Q Consensus 1 M~~m~~~dVvIVGa-GpaGl~~A~~La~~G~~V~viE~~~~ 40 (379)
|.+++...++|.|| |-.|..+|..|++.|.+|++++|+..
T Consensus 1 m~~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~ 41 (261)
T PRK08265 1 MIGLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDAD 41 (261)
T ss_pred CCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 66566678999996 88899999999999999999998753
No 474
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=91.07 E-value=0.29 Score=49.53 Aligned_cols=34 Identities=18% Similarity=0.303 Sum_probs=31.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
...|+|+|+|++|++++..+...|.+|+++|.++
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999999875
No 475
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=90.98 E-value=0.27 Score=50.71 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=31.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED 40 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~ 40 (379)
-+|+|+|+|..|-.+|..|.++|++|+++|++++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~ 451 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRT 451 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHH
Confidence 5799999999999999999999999999998864
No 476
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=90.98 E-value=0.23 Score=52.72 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=31.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~ 41 (379)
..|.|||||..|...|..++..|++|+++|.++..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~ 348 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKA 348 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 36999999999999999999999999999988643
No 477
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=90.87 E-value=2.2 Score=44.90 Aligned_cols=34 Identities=24% Similarity=0.217 Sum_probs=29.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCCC-cEEEEccCCC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARED 40 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~ 40 (379)
.+|+|||+|..|+-+|..+.+.|. +|+++++++.
T Consensus 452 k~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~ 486 (639)
T PRK12809 452 KRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDE 486 (639)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 579999999999999998888885 7999998753
No 478
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=90.85 E-value=0.39 Score=43.90 Aligned_cols=36 Identities=31% Similarity=0.393 Sum_probs=30.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCC-----------CcEEEEccCCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQ-----------YEVNLYEARED 40 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G-----------~~V~viE~~~~ 40 (379)
++.+|+|||+|-.|+.++-.|++.| .+++|+|.+..
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~V 56 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTV 56 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEE
Confidence 4578999999999999999999974 38899997753
No 479
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=90.80 E-value=0.37 Score=42.61 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=31.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE 39 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~ 39 (379)
++..|+|||+|-.|...|-.|++.|. +++++|.+.
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 35789999999999999999999998 599999775
No 480
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=90.76 E-value=0.41 Score=43.31 Aligned_cols=36 Identities=17% Similarity=0.261 Sum_probs=31.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCc---EEEEccCCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQYE---VNLYEARED 40 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~~---V~viE~~~~ 40 (379)
++..|+|+|||-+|...|..|.+.|.+ +.|++|+..
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl 62 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGV 62 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCc
Confidence 456899999999999999999999985 999999853
No 481
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=90.71 E-value=0.29 Score=46.45 Aligned_cols=32 Identities=31% Similarity=0.509 Sum_probs=28.4
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
.|.|+|+|-.|+..|+.|++.|.+|+++=|.+
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence 59999999999999999999998788776654
No 482
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=90.69 E-value=0.26 Score=52.32 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=31.6
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCC
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~~ 41 (379)
.|.|||||..|...|..++.+|++|+++|.++..
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~ 348 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHS 348 (714)
T ss_pred eEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 6999999999999999999999999999988643
No 483
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=90.64 E-value=0.29 Score=45.92 Aligned_cols=32 Identities=25% Similarity=0.384 Sum_probs=29.6
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
+|.|||.|..|..+|..|++.|++|+++++++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 38999999999999999999999999998774
No 484
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=90.63 E-value=0.41 Score=44.92 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=30.6
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE 39 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~ 39 (379)
...|+|||+|-+|.++|..|++.|. +|+|++|..
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 3579999999999999999999998 799998874
No 485
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=90.63 E-value=0.3 Score=48.81 Aligned_cols=33 Identities=27% Similarity=0.475 Sum_probs=30.8
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCCC
Q psy9141 8 SVVIVGGGLVGSLSACMFAKNQYEVNLYEARED 40 (379)
Q Consensus 8 dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~~ 40 (379)
+|+|+|+|..|..+|..|.+.|++|+++|+++.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 599999999999999999999999999998764
No 486
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.62 E-value=0.31 Score=49.44 Aligned_cols=32 Identities=13% Similarity=0.295 Sum_probs=29.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAR 38 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~ 38 (379)
..|+|+|.|++|++++..|.+.|.+|++.|+.
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 47999999999999999999999999999954
No 487
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=90.58 E-value=0.47 Score=41.62 Aligned_cols=35 Identities=31% Similarity=0.465 Sum_probs=30.8
Q ss_pred CCCcEEEECC-ChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 5 SKKSVVIVGG-GLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 5 ~~~dVvIVGa-GpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
+...++|+|| |.+|..+|..|++.|.+|+++.|+.
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~ 62 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDL 62 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 3468999997 9999999999999999999998763
No 488
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=90.58 E-value=0.2 Score=41.01 Aligned_cols=33 Identities=30% Similarity=0.333 Sum_probs=28.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAR 38 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~ 38 (379)
..+|.|||+|-+|.++|..|.+.|+.|.-+..+
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~sr 42 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSR 42 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSC
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 568999999999999999999999998877644
No 489
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=90.58 E-value=0.39 Score=45.10 Aligned_cols=34 Identities=21% Similarity=0.166 Sum_probs=31.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
...|+|||.|-+|.++|..|+..|.+|++++|.+
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4579999999999999999999999999999875
No 490
>PRK06194 hypothetical protein; Provisional
Probab=90.53 E-value=0.44 Score=44.25 Aligned_cols=39 Identities=26% Similarity=0.160 Sum_probs=32.8
Q ss_pred CCCCCCCcEEEECC-ChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 1 MKCNSKKSVVIVGG-GLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 1 M~~m~~~dVvIVGa-GpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
|..|+...|+|.|| |-.|..+|..|++.|.+|+++++..
T Consensus 1 m~~~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~ 40 (287)
T PRK06194 1 MKDFAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQ 40 (287)
T ss_pred CcCCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 55555567999995 7899999999999999999998764
No 491
>PTZ00117 malate dehydrogenase; Provisional
Probab=90.52 E-value=0.43 Score=45.57 Aligned_cols=36 Identities=25% Similarity=0.541 Sum_probs=31.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhCC-CcEEEEccCCCC
Q psy9141 6 KKSVVIVGGGLVGSLSACMFAKNQ-YEVNLYEAREDI 41 (379)
Q Consensus 6 ~~dVvIVGaGpaGl~~A~~La~~G-~~V~viE~~~~~ 41 (379)
...|+|||||-+|..+|..|+..| .+++++|.+...
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~ 41 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGV 41 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCcc
Confidence 458999999999999999999999 589999987543
No 492
>PRK08223 hypothetical protein; Validated
Probab=90.49 E-value=0.39 Score=44.92 Aligned_cols=36 Identities=19% Similarity=0.193 Sum_probs=32.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARED 40 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~ 40 (379)
+...|+|||+|=.|..+|..|++.|+ +++|+|.+..
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~V 62 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVF 62 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCc
Confidence 45789999999999999999999998 7999997753
No 493
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.48 E-value=0.39 Score=48.20 Aligned_cols=38 Identities=21% Similarity=0.379 Sum_probs=31.5
Q ss_pred CCCCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 1 M~~m~~~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
|.+.....|+|+|.|.+|.++|..|.+ |.+|++.|..+
T Consensus 1 ~~~~~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~ 38 (454)
T PRK01368 1 MNSHTKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLK 38 (454)
T ss_pred CcCCCCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCC
Confidence 443345689999999999999999995 99999999553
No 494
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.44 E-value=0.35 Score=48.60 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=30.9
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
..|+|+|.|.+|.++|..|.+.|++|++.|+++
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 479999999999999999999999999999875
No 495
>PRK13984 putative oxidoreductase; Provisional
Probab=90.36 E-value=4.2 Score=42.38 Aligned_cols=30 Identities=33% Similarity=0.425 Sum_probs=25.4
Q ss_pred CcEEEECCChHHHHHHHHHHhCCC------cEEEEc
Q psy9141 7 KSVVIVGGGLVGSLSACMFAKNQY------EVNLYE 36 (379)
Q Consensus 7 ~dVvIVGaGpaGl~~A~~La~~G~------~V~viE 36 (379)
.+|+|||||.+|+-+|..|++.|. +|+++.
T Consensus 419 k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~ 454 (604)
T PRK13984 419 RSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS 454 (604)
T ss_pred CcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence 589999999999999999998753 677764
No 496
>KOG2755|consensus
Probab=90.29 E-value=0.22 Score=45.48 Aligned_cols=34 Identities=29% Similarity=0.451 Sum_probs=28.5
Q ss_pred EEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCC
Q psy9141 9 VVIVGGGLVGSLSACMFAKN--QYEVNLYEAREDIR 42 (379)
Q Consensus 9 VvIVGaGpaGl~~A~~La~~--G~~V~viE~~~~~~ 42 (379)
-+|||||+||.+||-.|++. ..+|+++-..+...
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~vk 37 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVK 37 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHH
Confidence 58999999999999999986 56888888776543
No 497
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=90.28 E-value=0.5 Score=43.07 Aligned_cols=37 Identities=19% Similarity=0.221 Sum_probs=32.4
Q ss_pred CCCCCcEEEECC-ChHHHHHHHHHHhCCCcEEEEccCC
Q psy9141 3 CNSKKSVVIVGG-GLVGSLSACMFAKNQYEVNLYEARE 39 (379)
Q Consensus 3 ~m~~~dVvIVGa-GpaGl~~A~~La~~G~~V~viE~~~ 39 (379)
+|+...++|.|| |-.|..+|..|+++|.+|+++.+.+
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~ 41 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQ 41 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCh
Confidence 455567999997 9999999999999999999998875
No 498
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=90.22 E-value=0.44 Score=46.43 Aligned_cols=36 Identities=17% Similarity=0.293 Sum_probs=32.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCCC
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARED 40 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~~ 40 (379)
+...|+|||+|-.|..+|..|++.|. +++++|.+..
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~v 76 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTV 76 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEE
Confidence 45689999999999999999999998 8999998753
No 499
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=90.20 E-value=0.71 Score=34.73 Aligned_cols=33 Identities=33% Similarity=0.438 Sum_probs=29.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHhC-CCcEEEEcc
Q psy9141 5 SKKSVVIVGGGLVGSLSACMFAKN-QYEVNLYEA 37 (379)
Q Consensus 5 ~~~dVvIVGaGpaGl~~A~~La~~-G~~V~viE~ 37 (379)
...+++|+|+|-+|..+|..|.+. +.+|.++++
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 356899999999999999999998 678999998
No 500
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=90.17 E-value=0.27 Score=46.02 Aligned_cols=36 Identities=25% Similarity=0.208 Sum_probs=32.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCC-cEEEEccCC
Q psy9141 4 NSKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEARE 39 (379)
Q Consensus 4 m~~~dVvIVGaGpaGl~~A~~La~~G~-~V~viE~~~ 39 (379)
+++..|+|||+|-.|..+|-.|+..|. +++|+|.+.
T Consensus 17 L~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ 53 (286)
T cd01491 17 LQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred HhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 456799999999999999999999998 699999775
Done!