RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9141
(379 letters)
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin,
bacteroides F oxidoreductase; HET: FAD; 2.09A
{Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A*
2y6r_A* 3p9u_A*
Length = 398
Score = 149 bits (378), Expect = 1e-41
Identities = 49/230 (21%), Positives = 86/230 (37%), Gaps = 26/230 (11%)
Query: 1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRG 60
M S K+V I+GGG VG A + +N +V++YE D G +++L G
Sbjct: 21 MNLLSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIF--GGTLDLH-KGSG 77
Query: 61 REALRRIGLEDKLLAHGIPMRARMIHGQNGKLREIPYDP--------VH----NQVELEQ 108
+EA+++ GL +PM + + L P ++ + L
Sbjct: 78 QEAMKKAGLLQTYYDLALPMGVNIADEKGNILSTKNVKPENRFDNPEINRNDLRAILLNS 137
Query: 109 YPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSM 168
+ + + KL+ L+ T SET D L+I A+G S VRK + +
Sbjct: 138 LENDTVIWDRKLVMLEPGKKKWTLTFENKPSET--AD--LVILANGGMSKVRKFVTDTEV 193
Query: 169 FNYSQTYIEHGYMELCIPPSEDNE-------VWLYKNRLLSSVPEVRKRI 211
I+ + I + + ++ LL + P +
Sbjct: 194 EETGTFNIQADIHQPEINCPGFFQLCNGNRLMASHQGNLLFANPNNNGAL 243
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD;
1.75A {Pseudomonas aeruginosa}
Length = 399
Score = 80.0 bits (198), Expect = 9e-17
Identities = 26/172 (15%), Positives = 62/172 (36%), Gaps = 25/172 (14%)
Query: 9 VVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIG 68
V+I G G+ G++ A + + + V + E R + L G + G
Sbjct: 9 VLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERA----INGAD--LLKPAGIRVVEAAG 62
Query: 69 LEDKLLAHGIPMRARMIHGQNGKL------REIPYDP----VHNQV-------ELEQYPD 111
L ++ G +R + +G+L + + + +++
Sbjct: 63 LLAEVTRRGGRVRHELEVYHDGELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEAT 122
Query: 112 CNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCL 163
+ F+ ++ + + + ++ ++++GADG S VR+ L
Sbjct: 123 VEMLFETRIEAVQRDERHAIDQVRLNDGRVLRP--RVVVGADGIASYVRRRL 172
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase;
HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A*
3rp6_A*
Length = 407
Score = 73.8 bits (182), Expect = 1e-14
Identities = 32/172 (18%), Positives = 75/172 (43%), Gaps = 27/172 (15%)
Query: 9 VVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIG 68
+++G G+ G +A ++ + ++YEA ++I+ G + +++ G + + +G
Sbjct: 26 AIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAA------ISVWPNGVKCMAHLG 79
Query: 69 LEDKLLAHGIPMRA-RMIHGQNGK-LREIPYDP-----------VH----NQVELEQYPD 111
+ D + G P+R ++G+ + + P V + L+ +
Sbjct: 80 MGDIMETFGGPLRRMAYRDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR 139
Query: 112 CNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCL 163
++ F ++ + ++ VT D S D L+I ADG++S +R +
Sbjct: 140 DSVQFGKRVTRCEEDADGVTV-WFTDGSSAS-GD--LLIAADGSHSALRPWV 187
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic
hydroxylase, nicotine degradation, mono-oxygenase; HET:
FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2
d.16.1.2
Length = 397
Score = 71.2 bits (175), Expect = 8e-14
Identities = 36/172 (20%), Positives = 66/172 (38%), Gaps = 22/172 (12%)
Query: 1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYE-AREDIRNSGLSEGKSINLALSVR 59
M + + +VGG + G +A M +V++YE + + + G G + +
Sbjct: 1 MS-PTTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGT--G----IVVQPE 53
Query: 60 GREALRRIGLEDKLLAHGIPMRA-RMIHGQNGK-LREIPYD------PVHNQVELEQYPD 111
L G+E + +P + + G+ + +P D E +
Sbjct: 54 LVHYLLEQGVELD--SISVPSSSMEYVDALTGERVGSVPADWRFTSYDSIYGGLYELFGP 111
Query: 112 CNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCL 163
+ L+ L +S V R D ++ + + +IGADG S VRK L
Sbjct: 112 ERYHTSKCLVGLSQDSETVQM-RFSDGTKAE-AN--WVIGADGGASVVRKRL 159
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266,
NESG, PAR240, structural genomics, PSI-2; HET: FAD;
1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2
d.16.1.2 PDB: 2rgj_A*
Length = 410
Score = 67.3 bits (165), Expect = 2e-12
Identities = 42/181 (23%), Positives = 65/181 (35%), Gaps = 38/181 (20%)
Query: 9 VVIVGGGLVGSLS-ACMFAK-NQYEVNLYEAREDIRNSGLSE-GKSINLA-LSVRGREAL 64
++I G G+ G LS A + +V L E+ +IR G IN+ +V AL
Sbjct: 7 ILIAGAGIGG-LSCALALHQAGIGKVTLLESSSEIR-----PLGVGINIQPAAVE---AL 57
Query: 65 RRIGLEDKLLAHGIPMRARMIHGQNGKL-----------REIPYDPVHNQVEL------- 106
+GL L A IP Q+G P +H + EL
Sbjct: 58 AELGLGPALAATAIPTHELRYIDQSGATVWSEPRGVEAGNAYPQYSIH-RGELQMILLAA 116
Query: 107 --EQYPDCNIYFQHKLINLDVNSGNVT--FYRTEDNSETKITDNQLIIGADGAYSGVRKC 162
E+ + + ++ G V + D +++GADG +S VR
Sbjct: 117 VRERLGQQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGAD--VLVGADGIHSAVRAH 174
Query: 163 L 163
L
Sbjct: 175 L 175
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold,
oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti}
PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A*
3all_A*
Length = 379
Score = 65.8 bits (161), Expect = 4e-12
Identities = 35/171 (20%), Positives = 61/171 (35%), Gaps = 26/171 (15%)
Query: 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLA-LSVRGREA 63
+ + GGG G +A +N ++V L+E ++R + G I L +R
Sbjct: 10 KTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELR----AFGAGIYLWHNGLR---V 62
Query: 64 LRRIGLEDKLLAHGIPMRARMIHGQNGKLREI-----PYDPVH----NQVELEQYPD--C 112
L +G D +L N + + P+ + + + +
Sbjct: 63 LEGLGALDDVLQGSHTPPTYETWMHNKSVSKETFNGLPWRIMTRSHLHDALVNRARALGV 122
Query: 113 NIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCL 163
+I + + D G +T E D LI+GADG S VR +
Sbjct: 123 DISVNSEAVAAD-PVGRLTL----QTGEVLEAD--LIVGADGVGSKVRDSI 166
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein,
oxidoreductase; HET: FAD; 2.89A {Streptomyces
argillaceus}
Length = 570
Score = 65.5 bits (160), Expect = 8e-12
Identities = 33/174 (18%), Positives = 50/174 (28%), Gaps = 31/174 (17%)
Query: 9 VVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIG 68
VV+VGGG VG + A + E + G AL +R E L G
Sbjct: 52 VVVVGGGPVGLMLAGELRAGGVGALVLEKLVEP--VGHDRA----GALHIRTVETLDLRG 105
Query: 69 LEDKLLAHGIPMRARMIHGQNGKLREI-----PYDPVHN--QVELEQY-------PDCNI 114
L D+ L + G + + + Q E I
Sbjct: 106 LLDRFLEGTQVAKGLPFAGIFTQGLDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEI 165
Query: 115 YFQHKLINLDVNSGNVTF-YRTEDNSETKITDNQL----IIGADGAYSGVRKCL 163
H++ L ++ V + +G DG S VR+
Sbjct: 166 PRGHEVTRLRQDAEAVEVTVAGPSGPYP------VRARYGVGCDGGRSTVRRLA 213
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET:
FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2
d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A*
1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A*
1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A*
1phh_A* ...
Length = 394
Score = 63.5 bits (155), Expect = 2e-11
Identities = 33/207 (15%), Positives = 63/207 (30%), Gaps = 22/207 (10%)
Query: 9 VVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIG 68
V I+G G G L + K + + E + G L + LR G
Sbjct: 5 VAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRA----GVLEQGMVDLLREAG 60
Query: 69 LEDKLLAHGIPMRARMIHGQNGKLREIPYDPVH--------NQVELEQ--------YPDC 112
++ ++ G+ I + R I + Q E+ +
Sbjct: 61 VDRRMARDGLVHEGVEIAFAGQRRR-IDLKRLSGGKTVTVYGQTEVTRDLMEAREACGAT 119
Query: 113 NIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSMFNYS 172
+Y ++ D+ E + E D I G DG + R+ + + + +
Sbjct: 120 TVYQAAEVRLHDLQGERPY-VTFERDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVFE 178
Query: 173 QTYIEHGYMELCIPPSEDNEVWLYKNR 199
+ Y L P +E+ +
Sbjct: 179 RVYPFGWLGLLADTPPVSHELIYANHP 205
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase;
HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB:
2r0g_A* 2r0p_A* 3ept_A*
Length = 549
Score = 63.6 bits (155), Expect = 3e-11
Identities = 32/181 (17%), Positives = 53/181 (29%), Gaps = 33/181 (18%)
Query: 9 VVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIG 68
V+I+GGG VG A A Q + E + +I R E RR G
Sbjct: 29 VLILGGGPVGMALALDLAHRQVGHLVVEQTDGT--ITHPRVGTIG----PRSMELFRRWG 82
Query: 69 LEDKLLAHGIPMRARMIHGQNGKL---------------REIPYDPVHNQVELEQY---- 109
+ ++ G P + ++ R P Q+
Sbjct: 83 VAKQIRTAGWPGDHPLDAAWVTRVGGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAP 142
Query: 110 -----PDCNIYFQHKLINLDVNSGNVT--FYRTEDNSETKITDNQLIIGADGAYSGVRKC 162
+ + +L + + +V + + L + DGA S RK
Sbjct: 143 LLAEAVGERLRTRSRLDSFEQRDDHVRATITDLRTGATRAVHARYL-VACDGASSPTRKA 201
Query: 163 L 163
L
Sbjct: 202 L 202
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Length = 499
Score = 60.0 bits (146), Expect = 5e-10
Identities = 32/171 (18%), Positives = 49/171 (28%), Gaps = 29/171 (16%)
Query: 9 VVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIG 68
V++VG G G + A +V + E +G S G L + R E + G
Sbjct: 15 VIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQR--TGESRG----LGFTARTMEVFDQRG 68
Query: 69 LEDKLLAHGIPMR--ARMIHGQNGKLREIPYDPVHN--QVELEQY-------PDCNIYFQ 117
+ + G L + V Q E +
Sbjct: 69 ILPAFGPVETSTQGHFGGRPVDFGVLEG-AHYGVKAVPQSTTESVLEEWALGRGAELLRG 127
Query: 118 HKLINLDVNSGNVTF-YRTEDNSETKITDNQL----IIGADGAYSGVRKCL 163
H + L +V D + L ++G DG S VRK
Sbjct: 128 HTVRALTDEGDHVVVEVEGPDGPRS------LTTRYVVGCDGGRSTVRKAA 172
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Length = 500
Score = 60.0 bits (146), Expect = 5e-10
Identities = 34/170 (20%), Positives = 58/170 (34%), Gaps = 27/170 (15%)
Query: 9 VVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIG 68
V++VG G G + A EV + E + +G S G L + R E + G
Sbjct: 14 VIVVGAGPAGMMLAGELRLAGVEVVVLERLVER--TGESRG----LGFTARTMEVFDQRG 67
Query: 69 LEDKLLAHGIPMRARMIHGQ-NGKLREIPYDPVHN--QVELEQY-------PDCNIYFQH 118
+ + + + + E + Q E + +I H
Sbjct: 68 ILPRFGEVETSTQGHFGGLPIDFGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGH 127
Query: 119 KLINLDVNSGNVTF-YRTEDNSETKITDNQL----IIGADGAYSGVRKCL 163
++++L + VT R + T L ++G DG S VRK
Sbjct: 128 EVLSLTDDGAGVTVEVRGPEGKHT------LRAAYLVGCDGGRSSVRKAA 171
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein
structure initiative, northeast structural genomics
consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Length = 421
Score = 59.4 bits (144), Expect = 6e-10
Identities = 31/208 (14%), Positives = 75/208 (36%), Gaps = 29/208 (13%)
Query: 9 VVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIG 68
V+++G G G+++A + K+ ++V + E ++ R + E L R E L G
Sbjct: 8 VLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFV-IGES------LLPRCMEHLDEAG 60
Query: 69 LEDKLLAHGIPMRARMIHGQNGKLREIPYDPVHN-------QV---ELEQY-------PD 111
D + A G + + ++ + + + QV ++
Sbjct: 61 FLDAVKAQGFQQKFGAKFVRGKEIADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQG 120
Query: 112 CNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCL--MKQSMF 169
++ ++ + ++ + + N + + + II A G + + K S F
Sbjct: 121 VDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYGRVIPRMFGLDKPSGF 180
Query: 170 NYSQTYIEHGYMELCI-PPSEDNEVWLY 196
+T +++ P + + E
Sbjct: 181 ESRRTL--FTHIKDVKRPVAAEMEGNRI 206
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis,
merohedral twinning, enzyme mechanism, hydroxylase,
flavoprotein; HET: FAD VAK; 2.49A {Streptomyces
purpurascens}
Length = 535
Score = 58.2 bits (141), Expect = 2e-09
Identities = 39/189 (20%), Positives = 64/189 (33%), Gaps = 41/189 (21%)
Query: 9 VVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIG 68
V++VG GL G +A A+ V + E R + S N R E LR G
Sbjct: 8 VLVVGAGLGGLSTAMFLARQGVRVLVVERRPGL--SPYPRAAGQN----PRTMELLRIGG 61
Query: 69 LEDKLLAHGIP--------------MRARMIHGQNGKLREIPYDPVH---------NQVE 105
+ D+++ +R ++ + ++ +Q +
Sbjct: 62 VADEVVRADDIRGTQGDFVIRLAESVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDK 121
Query: 106 LEQY-------PDCNIYFQHKLINL----DVNSGNVTFYRTEDNSETKITDNQLIIGADG 154
LE I F +L++ D VT + E + L +GADG
Sbjct: 122 LEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPDGEYDLRAGYL-VGADG 180
Query: 155 AYSGVRKCL 163
S VR+ L
Sbjct: 181 NRSLVRESL 189
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 55.7 bits (134), Expect = 1e-08
Identities = 35/211 (16%), Positives = 68/211 (32%), Gaps = 32/211 (15%)
Query: 9 VVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIG 68
++++GGG GS A A + V L E R+ + E L +G
Sbjct: 10 LIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQ-IGES-----LLPATVHGICAMLG 63
Query: 69 LEDKLLAHGIPM--RARMIHGQNGKLREIPYDPVHN-------QV---ELEQY------- 109
L D++ G P+ G+ + + + QV +
Sbjct: 64 LTDEMKRAGFPIKRGGTFRWGKEPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSER 123
Query: 110 PDCNIYFQHKLINLDVNSGNVTF--YRTEDNSETKITDNQLIIGADGAYSGVRKCL--MK 165
++ +H++I++ YR + E + I+ A G + V + +
Sbjct: 124 KGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHA-RFIVDASGNRTRVSQAVGERV 182
Query: 166 QSMFNYSQTYIEHGYMELCIPPSEDNEVWLY 196
S F + +GY E + +
Sbjct: 183 YSRFFQNVAL--YGYFENGKRLPAPRQGNIL 211
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.9 bits (131), Expect = 3e-08
Identities = 53/340 (15%), Positives = 106/340 (31%), Gaps = 108/340 (31%)
Query: 101 HNQVELE------QYPDCNIYFQHKLI-NLDVNSGNVTFYRTEDNSETKITDNQL--IIG 151
H+ ++ E QY D F+ + N D +D ++ ++ ++ II
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKD-------VQDMPKSILSKEEIDHIIM 56
Query: 152 ADGAYSGVRK---CLMKQ-----SMF-------NYSQTYIEHGYMELCIPPSEDNEVWL- 195
+ A SG + L+ + F NY ++ PS +++
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK--FLMSPIKTEQRQPSMMTRMYIE 114
Query: 196 YKNRLLSSVPEVRKR--------ISLRAQSLKSL----------MNFPRADQGG------ 231
++RL + K + LR Q+L L + G
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLR-QALLELRPAKNVLIDGV-------LGSGKTWV 166
Query: 232 -------DKRDCLLHEG-----------TSRILVPNMRLSNHLDRDQPCKPLLDFKNPIK 273
K C + +L +L + D D + IK
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI--DPNWTSRSDHSSNIK 224
Query: 274 IQSHAVVNEF--------YKQESLIVASLCQEKIEKMFDN------TSTYKSRHINFI-- 317
++ H++ E Y+ L++ ++ K F+ T+ +K +F+
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV-TDFLSA 283
Query: 318 HRSYHLYTVDIGVHKVTESSILNLLLRGMKKNVPMPNKKL 357
+ H+ +T + +LLL K + + L
Sbjct: 284 ATTTHISLDHH-SMTLTPDEVKSLLL----KYLDCRPQDL 318
Score = 51.8 bits (123), Expect = 2e-07
Identities = 72/468 (15%), Positives = 125/468 (26%), Gaps = 173/468 (36%)
Query: 25 FAKNQYEVNLYEAREDIRNSGLSE---------------GKSINLALSVRGREALRRIGL 69
FAK Y V+ + +R L E GK+ +AL + +
Sbjct: 126 FAK--YNVSRLQPYLKLRQ-ALLELRPAKNVLIDGVLGSGKTW-VAL-----DVCLSYKV 176
Query: 70 EDKL------------------------LAHGI--PMRARMIHGQNGKLR-EIPYDPVHN 102
+ K+ L + I +R H N KLR +
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 103 QVELEQYPDCNIYFQHKLINLD-VNSGNV--TFYRTEDNSETKI---TDNQLIIGADGAY 156
++ + Y +C L+ L V + F N KI T + + A
Sbjct: 237 LLKSKPYENC-------LLVLLNVQNAKAWNAF-----NLSCKILLTTRFKQVTDFLSAA 284
Query: 157 SGVRKCLMKQSM-FNYSQT------YIEHGYMELCIPP-----------------SEDNE 192
+ L SM + Y++ +L P +
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL--PREVLTTNPRRLSIIAESIRDGLA 342
Query: 193 VW-LYKNRLLSSVPEVRKRISLRAQS-------LKSLMNFPRAD------------QGGD 232
W +K+ + + + SL L FP
Sbjct: 343 TWDNWKHVNCDKLTTIIE-SSLNVLEPAEYRKMFDRLSVFP-PSAHIPTILLSLIWFDVI 400
Query: 233 KRDC--LLHEGTSRILV----PNMRLSNH-LDRDQPCKPLLDFKNPIKIQSHAVVNEFYK 285
K D ++++ LV +S + + L K + H + + Y
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE------LKVKLENEYALHRSIVDHYN 454
Query: 286 QESLIVASLCQEKIEKMF-DNTSTYKSRHINFIHRSYHLYTVD----------------- 327
I + + + + D Y HI +HL ++
Sbjct: 455 ----IPKTFDSDDLIPPYLDQ---YFYSHI-----GHHLKNIEHPERMTLFRMVFLDFRF 502
Query: 328 -------IGVHKVTESSILNLL--LRGMKK----NVPMPNKKLDMILE 362
SILN L L+ K N P + ++ IL+
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550
Score = 31.4 bits (70), Expect = 0.68
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 12/69 (17%)
Query: 318 HRSYHLYTVDIGVHKVTESSILNLLLRGMKKN-----VP------MPNKKLDMILESANG 366
H +H + G H+ IL++ N V + +++D I+ S +
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60
Query: 367 LGVLGRRLF 375
+ RLF
Sbjct: 61 VSGT-LRLF 68
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 50.6 bits (121), Expect = 4e-07
Identities = 25/206 (12%), Positives = 62/206 (30%), Gaps = 26/206 (12%)
Query: 9 VVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRIG 68
V+I+GGG GS +A ++ ++ L +++ R K A+S + L
Sbjct: 9 VLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGD----KPCGDAVSKAHFDKLGMPY 64
Query: 69 LEDKLLAHGIPMRARMIHGQNGKLREIPYDPVHNQVELEQYPDC----------NIYFQH 118
+ + L + I ++ + + + ++ Y I+
Sbjct: 65 PKGEELENKI-NGIKLYSPDMQTVWTVNGEGF--ELNAPLYNQRVLKEAQDRGVEIWDLT 121
Query: 119 KLINLDVNSGN---VTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSMFNYSQTY 175
+ G + N E + +++ A G R L +
Sbjct: 122 TAMKPIFEDGYVKGAVLFNRRTNEELTVYSK-VVVEATGYSRSFRSKLPPELPITEDLDD 180
Query: 176 IE-----HGYMELCIPPSEDNEVWLY 196
+ + + + + ++
Sbjct: 181 KDADVAYREVLLTKEDIEDHDYLRIF 206
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 49.2 bits (117), Expect = 1e-06
Identities = 32/180 (17%), Positives = 66/180 (36%), Gaps = 36/180 (20%)
Query: 9 VVIVGGGLVGSLSACMFAKNQYEVNLYEA----REDIRNSGLSEGKSINLALSVRGREAL 64
V I+GGG GS++ K ++V +YE R + E L L
Sbjct: 26 VAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRV-----GES------LLPGTMSIL 74
Query: 65 RRIGLEDKLLAHGIPM--RARMIHGQNGK--------LREIPYDPVH----NQVELEQY- 109
R+GL++K+ A A + GQ+ + P+ H + E ++
Sbjct: 75 NRLGLQEKIDAQNYVKKPSATFLWGQDQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLL 134
Query: 110 ------PDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCL 163
++ + + ++D++ + E+ ++ +I A G+ + + L
Sbjct: 135 LDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVESDFVIDAGGSGGPISRKL 194
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.30A {Chromobacterium violaceum
atcc 12472}
Length = 381
Score = 48.2 bits (114), Expect = 2e-06
Identities = 26/198 (13%), Positives = 59/198 (29%), Gaps = 31/198 (15%)
Query: 9 VVIVGGGLVGSLSACMFAKNQ--YEVNLYEAREDIRNSG----LSEGKSINLALSVRGRE 62
++++G G G + A + + + +++ E ++ G L + A + +
Sbjct: 3 ILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLD 62
Query: 63 ALRRIGL----EDKLLAHGIPMRARMIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQH 118
A R+ + KL+ H P G R + ++ I F+
Sbjct: 63 APERLNPQFLEDFKLVHHNEPSLMSTGVLLCGVERRGLVHALRDKCR---SQGIAIRFES 119
Query: 119 KLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSMFNYSQTYIEH 178
++ E + D L++ A+G Y +
Sbjct: 120 ---------------PLLEHGELPLADYDLVVLANGVNHKTAHFT---EALVPQVDYGRN 161
Query: 179 GYMELCIPPSEDNEVWLY 196
Y+ D ++
Sbjct: 162 KYIWYGTSQLFDQMNLVF 179
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 47.7 bits (114), Expect = 3e-06
Identities = 34/205 (16%), Positives = 71/205 (34%), Gaps = 27/205 (13%)
Query: 9 VVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINL---ALSVRGREALR 65
V++VGGG GS +A AK + + E R +I S LS
Sbjct: 7 VLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIG--------SPVRCGEGLSKGILNEAD 58
Query: 66 RIGLEDKLLAHGIPMRARMIHGQNGKLREIPYDPVHNQV-------ELEQY-------PD 111
I + +A+ + AR+ + + + N+V + +++
Sbjct: 59 -IKADRSFIANEVK-GARIYGPSEKRPIILQSEKAGNEVGYVLERDKFDKHLAALAAKAG 116
Query: 112 CNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSMFNY 171
+++ + + + +G V + N+E +++I ADG S + +S+
Sbjct: 117 ADVWVKSPALGVIKENGKVAGAKIRHNNEIVDVRAKMVIAADGFESEFGRWAGLKSVILA 176
Query: 172 SQTYIEHGYMELCIPPSEDNEVWLY 196
I + + + Y
Sbjct: 177 RNDIISALQYRMINVDVDPDYTDFY 201
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase,
complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas
testosteroni} PDB: 2dki_A*
Length = 639
Score = 46.4 bits (110), Expect = 1e-05
Identities = 27/189 (14%), Positives = 56/189 (29%), Gaps = 40/189 (21%)
Query: 9 VVIVGGGLVGSLSACMFAKNQ-YEVNLYEAREDIRNSGLSEGKSINLALSVRGREALRRI 67
V+IVG G G A A + E +E + G++ ++ R E
Sbjct: 35 VLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGP----MELGQAD--GIACRTMEMFEAF 88
Query: 68 GLEDKLLAHGIPMRARMIHGQNGK-----LREIPYDPVH-----------NQVELEQY-- 109
D +L + + R NQ + +
Sbjct: 89 EFADSILKEACWINDVTFWKPDPGQPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYL 148
Query: 110 -------PDCNIYFQHKLINLDVNSGNVTF--------YRTEDNSETKITDNQLIIGADG 154
++ +++++ V+ G + + + + ++G DG
Sbjct: 149 ERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHAGQIETVQARYVVGCDG 208
Query: 155 AYSGVRKCL 163
A S VR+ +
Sbjct: 209 ARSNVRRAI 217
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.6 bits (110), Expect = 1e-05
Identities = 34/159 (21%), Positives = 54/159 (33%), Gaps = 49/159 (30%)
Query: 22 ACMFA---KNQYEVNLYEAREDIRNSGLSEGKSINLAL--------------SVRG-REA 63
+ M + Q +V + + NS L GK + ++L S+ G
Sbjct: 336 SPMLSISNLTQEQV---QDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLT 392
Query: 64 LRRIGLEDKLLAHGIPMRARMIHGQNGKLREIPYDPV----HNQVELEQYPDCNIYFQHK 119
LR+ L IP R + N + PV H+ + L D
Sbjct: 393 LRKAKAPSGLDQSRIPFSERKLKFSNR------FLPVASPFHSHL-LVPASD-------- 437
Query: 120 LINLDVNSGNVTF---------YRTEDNSETKITDNQLI 149
LIN D+ NV+F Y T D S+ ++ +
Sbjct: 438 LINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSIS 476
Score = 35.0 bits (80), Expect = 0.041
Identities = 21/117 (17%), Positives = 45/117 (38%), Gaps = 28/117 (23%)
Query: 258 RDQPCKPLLDFKNPIKIQSHAVVNEFYKQES--LIVASLCQEKIEKMFDNTSTY--KSRH 313
R P P ++ NE S L +++L QE+++ + T+++ +
Sbjct: 309 RCYEAYPNTSL-PPSILEDSLENNE--GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ 365
Query: 314 I---------NFI---H-RSYHLYTVDIGVHKVTESSILNLLLRGMKKNVPMPNKKL 357
+ N + +S LY +++ + K S L+ + +P +KL
Sbjct: 366 VEISLVNGAKNLVVSGPPQS--LYGLNLTLRKAKAPSGLD------QSRIPFSERKL 414
Score = 30.0 bits (67), Expect = 1.5
Identities = 39/234 (16%), Positives = 71/234 (30%), Gaps = 77/234 (32%)
Query: 85 IH--GQNGK-LREIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTF-------YR 134
IH G+ GK +RE Y + E D + + ++ +S + TF
Sbjct: 1674 IHFGGEKGKRIREN-YSAM----IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA 1728
Query: 135 TEDN-----------------SETKITDNQLIIG-------ADGAYSGV----------- 159
T+ S+ I + G A + + V
Sbjct: 1729 TQ-FTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVF 1787
Query: 160 -RKCLMKQSMFNYSQTYIEHGYMELCIP----PSEDNEVWLYKNRLLSSVPEVRKRISLR 214
R M+ ++ +G M P S E ++ V +R+ R
Sbjct: 1788 YRGMTMQVAVPRDELGRSNYG-MIAINPGRVAASFSQE----------ALQYVVERVGKR 1836
Query: 215 AQSLKSLMNFPRADQ----GGDKR------DCLLHEGTSRILVPNMRLSNHLDR 258
L ++N+ +Q GD R + L +I + ++ S L+
Sbjct: 1837 TGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEE 1890
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta
strands, dimer, cavity, oxidoreductase; 2.30A
{Pseudomonas putida}
Length = 430
Score = 45.3 bits (106), Expect = 2e-05
Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 2/82 (2%)
Query: 2 KCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAR--EDIRNSGLSEGKSINLALSVR 59
+ KK + IVG G G ++ +V +Y R ++ L + N R
Sbjct: 18 GSHMKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYSGLRLLNTVAHNAVTVQR 77
Query: 60 GREALRRIGLEDKLLAHGIPMR 81
++ G
Sbjct: 78 EVALDVNEWPSEEFGYFGHYYY 99
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding,
para-hydroxy-benzoate-hydroxylase fold (PHBH- fold),
monotopic membrane-binding domain; HET: FAD OMN TON;
2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Length = 504
Score = 45.1 bits (106), Expect = 3e-05
Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 15/108 (13%)
Query: 4 NSKKSVVIVGGGLVGSLSACMF-AKNQYEVNLYEARED----IRNSGLSEGKSINL---A 55
+S K V ++G G+ G L+A + V ++EA +R S +G +
Sbjct: 11 SSAKRVAVIGAGVSG-LAAAYKLKIHGLNVTVFEAEGKAGGKLR-SVSQDGLIWDEGANT 68
Query: 56 LSVRGREA---LRRIGLEDKLLAHGIPMRARMIHGQNGKLREIPYDPV 100
++ + + +GL +K + R I NG +P +P+
Sbjct: 69 MTESEGDVTFLIDSLGLREKQQFP-LSQNKRYIAR-NGTPVLLPSNPI 114
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for
structural genomics, JCSG, protein structure INI PSI-2;
HET: FAD; 2.06A {Exiguobacterium sibiricum}
Length = 475
Score = 43.1 bits (101), Expect = 1e-04
Identities = 30/109 (27%), Positives = 43/109 (39%), Gaps = 18/109 (16%)
Query: 5 SKKSVVIVGGGLVGSLSACMF---AKNQYEVNLYEARED----IRNSGLSEGKSINL--- 54
S K +VIVGGG+ G L+A + A + L EA E + + +G +I
Sbjct: 3 SSKRLVIVGGGITG-LAAAYYAERAFPDLNITLLEAGERLGGKVA-TYREDGFTIERGPD 60
Query: 55 ALSVRGREA---LRRIGLEDKLLAHGIPMRARMIHGQNGKLREIPYDPV 100
+ R + IGL +KL+ I G L IP V
Sbjct: 61 SYVARKHILTDLIEAIGLGEKLVR--NNTSQAFILD-TGGLHPIPKGAV 106
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase;
HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2
c.47.1.10 d.16.1.2 PDB: 1foh_A*
Length = 665
Score = 43.1 bits (101), Expect = 1e-04
Identities = 21/114 (18%), Positives = 45/114 (39%), Gaps = 11/114 (9%)
Query: 9 VVIVGGGLVGSLSACMFAKNQYEVN-----LYEAREDIRNSGLSEGKSINLALSVRGREA 63
V+IVG G G ++A + ++ + + + R + G++ L R E+
Sbjct: 11 VLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK----VYNGQA--DGLQCRTLES 64
Query: 64 LRRIGLEDKLLAHGIPMRARMIHGQNGKLREIPYDPVHNQVELEQYPDCNIYFQ 117
L+ +GL DK+L+ M ++ + D + + + + Q
Sbjct: 65 LKNLGLADKILSEANDMSTIALYNPDENGHIRRTDRIPDTLPGISRYHQVVLHQ 118
Score = 32.3 bits (73), Expect = 0.29
Identities = 21/114 (18%), Positives = 43/114 (37%), Gaps = 19/114 (16%)
Query: 116 FQHKLINLDVNSGNVTFYRTEDNSETKITDNQLIIGADGAYSGVRKCLMKQSMFNYSQTY 175
F+ L + N ++ E + + +IG DG +S VR+ L
Sbjct: 189 FRSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHSWVRRTL------------ 236
Query: 176 IEHGYMELCIPPSEDNEVW-LYKNRLLSSVPEVRKRISLRAQSLKSLMNFPRAD 228
+ + + +W + S+ P++R R ++ + S+M PR +
Sbjct: 237 ------GFEMIGEQTDYIWGVLDAVPASNFPDIRSRCAIHSAESGSIMIIPREN 284
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Length = 478
Score = 42.7 bits (100), Expect = 1e-04
Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 14/108 (12%)
Query: 4 NSKKSVVIVGGGLVGSLSACMF-AKNQYEVNLYEARED----IRNSGLSEGKSINL---A 55
+ +V +VGGG+ G L+ + L E+ + + G + +
Sbjct: 14 TTGMNVAVVGGGISG-LAVAHHLRSRGTDAVLLESSARLGGAVG-THALAGYLVEQGPNS 71
Query: 56 LSVRGREAL---RRIGLEDKLLAHGIPMRARMIHGQNGKLREIPYDPV 100
R + LE ++ A + R ++ G+LR +P P
Sbjct: 72 FLDREPATRALAAALNLEGRIRAADPAAKRRYVYT-RGRLRSVPASPP 118
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 41.2 bits (97), Expect = 5e-04
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 9/82 (10%)
Query: 2 KCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGR 61
KK++ +VG G G A A ++V L++A +I G N+A + G+
Sbjct: 369 PAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEI-------GGQFNIAKQIPGK 421
Query: 62 EALRRIG--LEDKLLAHGIPMR 81
E + G+ ++
Sbjct: 422 EEFYETLRYYRRMIEVTGVTLK 443
Score = 28.1 bits (63), Expect = 5.4
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAR 38
V I+G G +G +A ++ + A
Sbjct: 495 NKVAIIGCGGIGFDTAMYLSQPGESTSQNIAG 526
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate
porphyria disease, VP oxidoreductase-oxidoreductase
inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Length = 477
Score = 40.8 bits (95), Expect = 6e-04
Identities = 24/109 (22%), Positives = 38/109 (34%), Gaps = 19/109 (17%)
Query: 6 KKSVVIVGGGLVGSLSACMFAKNQ---YEVNLYEARED----IRNSGLSEGKSIN----- 53
++VV++GGG+ G L+A +V L E+ E IR+ G
Sbjct: 2 GRTVVVLGGGISG-LAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRG 60
Query: 54 -LALSVRGREAL---RRIGLEDKLLA--HGIPMRARMIHGQNGKLREIP 96
G L +GL+ ++L P G L +P
Sbjct: 61 IRPAGALGARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYVGGALHALP 109
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A
3a97_A 3adp_A* 3f3s_A*
Length = 319
Score = 39.6 bits (93), Expect = 0.001
Identities = 16/48 (33%), Positives = 21/48 (43%)
Query: 1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSE 48
M + V+IVG GLVG A +FA + V LY+ L
Sbjct: 1 MASPAAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALEN 48
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical
bundle, sandwiched sheets, structural genomics; HET:
TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A*
2ar8_A* 2ard_A* 2jkc_A*
Length = 538
Score = 39.7 bits (91), Expect = 0.001
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 7 KSVVIVGGGLVGSLSACMFAK---NQYEVNLYEAREDIRNSGLSEG 49
K++VIVGGG G ++A + Q + L E+ I G+ E
Sbjct: 6 KNIVIVGGGTAGWMAASYLVRALQQQANITLIES-AAIPRIGVGEA 50
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm,
FAD, flavoprotein, oxidoreductase, porphyrin
biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Length = 470
Score = 39.6 bits (92), Expect = 0.001
Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 22/115 (19%)
Query: 4 NSKKSVVIVGGGLVGSLSACMF-------AKNQYEVNLYEARED----IRNSGLSEGKSI 52
+ KK VVI+GGG+ G L+A + E+ L EA I+ + +G I
Sbjct: 3 DGKKHVVIIGGGITG-LAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQ-TVKKDGYII 60
Query: 53 NL---ALSVRGREAL---RRIGLEDKLLAHGIPMRARMIHGQNGKLREIPYDPVH 101
+ R + A + +GLE L+ + + N L +P V
Sbjct: 61 ERGPDSFLERKKSAPQLVKDLGLEHLLVNN--ATGQSYVL-VNRTLHPMPKGAVM 112
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT
structure initiative, northeast structural genomics
consort NESG; HET: FAD TLA; 1.70A {Bordetella
pertussis}
Length = 369
Score = 39.0 bits (92), Expect = 0.002
Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 25/97 (25%)
Query: 9 VVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI------RNSGL-------SEGKSINLA 55
+++G G+VG A A +EV + EA E I RNS + S+
Sbjct: 7 CIVIGAGVVGLAIARALAAGGHEVLVAEAAEGIGTGTSSRNSEVIHAGIYYPAD-SLKAR 65
Query: 56 LSVRGREALRRIGLEDKLLAHGIPMRARMIHGQNGKL 92
L VRG+ L A G+P H + GKL
Sbjct: 66 LCVRGKHLLYEY-----CAARGVP------HQRLGKL 91
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis,
biosynthetic protein, flavoprotein; HET: TRP; 2.08A
{Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A*
2oal_A* 2oam_A
Length = 550
Score = 39.4 bits (90), Expect = 0.002
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 7 KSVVIVGGGLVGSLSACMFAK---NQYEVNLYEAREDIRNSGLSEG 49
++IVGGG G ++A K ++ L +A DI G+ E
Sbjct: 26 DKILIVGGGTAGWMAASYLGKALQGTADITLLQA-PDIPTLGVGEA 70
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei;
HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A*
2wes_A*
Length = 511
Score = 38.9 bits (89), Expect = 0.003
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 7 KSVVIVGGGLVGSLSACMFAK---NQYEVNLYEARED 40
+SVVIVGGG G ++A ++ +V L E+
Sbjct: 3 RSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNV 39
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 36.2 bits (82), Expect = 0.013
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 19/74 (25%)
Query: 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREALR 65
+ I+G G+ G +A ++V+L++ R SG GR + +
Sbjct: 2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKS---RGSG--------------GRMSSK 44
Query: 66 RIGLEDKLLAHGIP 79
R + L G
Sbjct: 45 RS--DAGALDMGAQ 56
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 36.5 bits (85), Expect = 0.014
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
Query: 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREAL 64
S V++VG G G +A Y+V L EA D+ G + ++ G A
Sbjct: 390 SDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDL-------GGRVTQESALPGLSAW 442
Query: 65 RRI 67
R+
Sbjct: 443 GRV 445
Score = 30.3 bits (69), Expect = 1.2
Identities = 15/108 (13%), Positives = 33/108 (30%), Gaps = 29/108 (26%)
Query: 7 KSVVIV--GGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREAL 64
K VV+ +G + A + A+ YEV++ + + +
Sbjct: 524 KKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTNN---------------TF 568
Query: 65 RRIGLEDKLLAHGIPM------------RARMIHGQNGKLREIPYDPV 100
++ +L+ +G+ + RE+ D V
Sbjct: 569 EVNRIQRRLIENGVARVTDHAVVAVGAGGVTVRDTYASIERELECDAV 616
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 376
Score = 36.1 bits (82), Expect = 0.015
Identities = 9/34 (26%), Positives = 20/34 (58%)
Query: 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED 40
K ++IVG G+ G ++ + + ++V + EA +
Sbjct: 45 KRILIVGAGIAGLVAGDLLTRAGHDVTILEANAN 78
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural
genomics, JCSG, protein structure initiative
biosynthetic protein; HET: MSE TLA PG4; 1.50A
{Shewanella frigidimarina}
Length = 526
Score = 36.2 bits (82), Expect = 0.018
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 1 MKCNSKKSVVIVGGGLVGSLSACMFAK 27
M ++IVGGG G ++A + A
Sbjct: 2 MMQKPITEIIIVGGGTAGWITAGLLAA 28
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 36.2 bits (84), Expect = 0.019
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRGREAL 64
+K SV+IVG G GS +A + ++ Y V+L + E I G +N ++ G
Sbjct: 388 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKI-------GGHLNQVAALPGLGEW 440
Query: 65 RRI 67
Sbjct: 441 SYH 443
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 35.0 bits (80), Expect = 0.033
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41
MK K ++IVG G G++ A+ ++V++ + R+ I
Sbjct: 1 MK---SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHI 38
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing
protein, oxidoreductase; HET: FAD; 1.20A
{Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB:
1c0i_A* 1c0l_A* 1c0k_A*
Length = 363
Score = 34.3 bits (78), Expect = 0.057
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAR 38
+ +S+K VV++G G++G SA + A+ Y V++
Sbjct: 1 LMMHSQKRVVVLGSGVIGLSSALILARKGYSVHILARD 38
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG
FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP:
c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A*
1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 34.5 bits (79), Expect = 0.059
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41
+ K VVIVG G+ G +A + A ++V + EA E
Sbjct: 32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERP 68
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase,
inhibitor binding, rasagiline, enantioselectivity,
oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens}
SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A*
1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A*
2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A*
2v60_A* 2v61_A* 2vrl_A* ...
Length = 520
Score = 34.0 bits (78), Expect = 0.071
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41
++K VV+VGGG+ G +A + + V + EAR+ +
Sbjct: 2 SNKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRV 39
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 33.9 bits (77), Expect = 0.081
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41
+IVG GL G++ A K +V + E R I
Sbjct: 2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHI 36
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L)
stereospecific opine dehydrogenase, oxidoreductase;
1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Length = 359
Score = 33.5 bits (76), Expect = 0.099
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLY----EAREDIRNSG 45
K+ ++G G G A A V + + ++I++ G
Sbjct: 3 ESKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRG 47
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 33.2 bits (75), Expect = 0.12
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41
+ +IVG G GS+ A A + V + + R I
Sbjct: 27 SKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHI 64
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann
fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma
gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A*
1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Length = 331
Score = 32.5 bits (75), Expect = 0.20
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 1 MKCNSKKSVVIVGGGLVGSLSACMFA-KNQYEVNLYEAREDIRNSGLSEGKSINLA 55
+ KK V ++G G++G + A + +V LY D+ G+ EGK+++L+
Sbjct: 5 LVQRRKK-VAMIGSGMIGGTMGYLCALRELADVVLY----DV-VKGMPEGKALDLS 54
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB:
1e5l_A* 1e5q_A
Length = 450
Score = 32.6 bits (73), Expect = 0.23
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 5 SKKSVVIVGGGLVGSLSACMFAKNQYEVNLY 35
+ KSV+++G G V + + + +V +
Sbjct: 2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVA 32
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride
transfer mechanism, GR2-family, flavoenzyme, FAD
containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB:
2jb1_A* 2jb2_A* 2jb3_A*
Length = 489
Score = 32.6 bits (74), Expect = 0.23
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39
SVV++GGG G SA K Y+V + EAR
Sbjct: 11 SHSVVVLGGGPAGLCSAFELQKAGYKVTVLEART 44
>3tl2_A Malate dehydrogenase; center for structural genomics of
infectious diseases, csgid dehydrogenase,
oxidoreductase, citric acid cycle; 1.70A {Bacillus
anthracis}
Length = 315
Score = 32.1 bits (74), Expect = 0.23
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 1 MKCNSKKSVVIVGGGLVGSLSACMFA-KNQYEVNLYEAREDIRNS-GLSEGKSINLA 55
M KK V ++G G G+ +A + A K +V L DI ++GK++++
Sbjct: 4 MTIKRKK-VSVIGAGFTGATTAFLLAQKELADVVLV----DIPQLENPTKGKALDML 55
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 32.5 bits (73), Expect = 0.24
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYE-VNLYEAREDI 41
M +VI+G G G +A + Y+ +LYE +
Sbjct: 4 MAELLTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTP 45
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase,
flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE;
1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A*
3ayl_A*
Length = 721
Score = 32.5 bits (72), Expect = 0.27
Identities = 21/98 (21%), Positives = 30/98 (30%), Gaps = 12/98 (12%)
Query: 4 NSKKSVVIVGGGLVGSLSACMFAKNQ--------YEVNLYEAREDIRNSGLSEGKSINLA 55
+ IVGGG G + + +V +YEA D K+I +
Sbjct: 54 AGNYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSFLHDRPGIKAIKVR 113
Query: 56 LSVRGREALRRIGLEDKLLAHGI----PMRARMIHGQN 89
GR + + D I MR I G
Sbjct: 114 GLKAGRVSAALVHNGDPASGDTIYEVGAMRFPEIAGLT 151
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary
complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo
sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A*
1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A*
3had_A* 2hdh_A* 3hdh_A*
Length = 302
Score = 31.8 bits (73), Expect = 0.32
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSI--NLALSVRGR 61
K V ++GGGL+G+ A + A + V L + EDI K I +L + +
Sbjct: 16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSK---KGIEESLRKVAKKK 69
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Length = 425
Score = 32.0 bits (73), Expect = 0.33
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 9 VVIVGGGLVGSLS-ACMFAKNQYEVNLYEAREDI 41
V++G GL G L A +K +EV ++E
Sbjct: 3 TVVIGAGL-GGLLSAARLSKAGHEVEVFERLPIT 35
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 32.2 bits (72), Expect = 0.33
Identities = 6/39 (15%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 4 NSKKSVVIVGGGLVGSLSACMFAKNQ-YEVNLYEAREDI 41
+ V+++G G G +A + + ++ E
Sbjct: 8 DISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETP 46
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 31.4 bits (71), Expect = 0.44
Identities = 6/42 (14%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQY-EVNLYEAREDI 41
M + + I+G G G + + + + + E + +
Sbjct: 1 MSISKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHV 42
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution,
hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3
d.16.1.6 PDB: 1lv0_A* 1gnd_A
Length = 433
Score = 31.4 bits (70), Expect = 0.46
Identities = 6/33 (18%), Positives = 15/33 (45%)
Query: 9 VVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41
V+++G GL + + + + N +V +
Sbjct: 9 VIVLGTGLTECILSGIMSVNGKKVLHMDRNPYY 41
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD;
1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Length = 448
Score = 31.3 bits (71), Expect = 0.47
Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 14/71 (19%)
Query: 9 VVIVGGGLVGSLSACMFAKNQY-EVNLYEAREDIRNSGLSEGKS-----------INLAL 56
V+VG G+VG +A V + + SG G+S +N +
Sbjct: 26 YVVVGAGVVGLAAAYYLKVWSGGSVLVVD-AGHAPGSG-DSGRSMAAFRTFFSSTMNRLV 83
Query: 57 SVRGREALRRI 67
+
Sbjct: 84 AGSTVRLFEDA 94
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 31.3 bits (71), Expect = 0.50
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 9 VVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39
VV+VGGG VG +A A+ + V + E
Sbjct: 7 VVVVGGGPVGLATAWQVAERGHRVLVLERHT 37
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium,
SGC, trans PF10_0345, protein transport; 1.85A
{Plasmodium falciparum 3D7}
Length = 475
Score = 31.4 bits (70), Expect = 0.53
Identities = 5/31 (16%), Positives = 15/31 (48%)
Query: 9 VVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39
V+I+G GL + + + + ++ + +
Sbjct: 23 VIILGTGLKECILSGLLSHYGKKILVLDRNP 53
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD
BCN; 2.25A {Mycobacterium tuberculosis}
Length = 399
Score = 30.9 bits (69), Expect = 0.64
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 1 MKCNSKK-SVVIVGGGLVGSLSACMFAKNQ-YEVNLYEAREDI 41
M+ + + + +VG G G A A V + E R I
Sbjct: 1 MQPMTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHI 43
>3i83_A 2-dehydropantoate 2-reductase; structural genomics,
oxidoreductase, NADP, pantothenate BIOS PSI-2, protein
structure initiative; 1.90A {Methylococcus capsulatus}
Length = 320
Score = 31.0 bits (71), Expect = 0.65
Identities = 9/41 (21%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 9 VVIVGGGLVGSLSACMFAKNQYEVNLY--EAREDIRNSGLS 47
++++G G +GS + AK + V++ E ++ G+
Sbjct: 5 ILVIGTGAIGSFYGALLAKTGHCVSVVSRSDYETVKAKGIR 45
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase,
inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A
{Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A*
1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A*
3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A*
3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Length = 389
Score = 31.1 bits (71), Expect = 0.66
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 9 VVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39
V++VG G +G + AK + L +A +
Sbjct: 6 VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD 36
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE
protein structure initiative; 2.50A {Geobacter
metallireducens}
Length = 312
Score = 30.6 bits (70), Expect = 0.67
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 8/48 (16%)
Query: 1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLY--EAREDIRNSGL 46
++ + IVG G +G + ++ +V+ E I +GL
Sbjct: 3 LR------IAIVGAGALGLYYGALLQRSGEDVHFLLRRDYEAIAGNGL 44
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A
{Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A*
2yg7_A* 3rha_A*
Length = 453
Score = 30.9 bits (70), Expect = 0.71
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 5 SKKSVVIVGGGLVGSLS-ACMFAKNQYEVNLYEAR 38
++ V IVG G G L+ A K V + EAR
Sbjct: 4 LQRDVAIVGAGPSG-LAAATALRKAGLSVAVIEAR 37
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP
NAD; 2.50A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Length = 316
Score = 30.5 bits (70), Expect = 0.75
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 11/59 (18%)
Query: 1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE----DIRNSGLSEGKSINLA 55
MK N VV++G G VG ++ +FA + A E D N + G +++
Sbjct: 1 MKNNGGARVVVIGAGFVG--ASYVFALMNQGI----ADEIVLIDA-NESKAIGDAMDFN 52
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase
type II family, thiazole synthase, mitochondria DNA
repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP:
c.3.1.6 PDB: 3fpz_A*
Length = 326
Score = 30.5 bits (68), Expect = 0.81
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQ--YEVNLYEAREDI 41
+ + V+IVG G G +A + AKN+ +V + E+
Sbjct: 60 LDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP 102
>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics,
PSI, protein structure initiative, NYSG oxidoreductase;
2.20A {Escherichia coli}
Length = 483
Score = 30.8 bits (70), Expect = 0.91
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 13/71 (18%)
Query: 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSI--NLALSV-RGR-- 61
++V ++G G +G+ A + A + ++V LY+ + + I L V RG+
Sbjct: 6 QTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAI---DGIHARLNSRVTRGKLT 62
Query: 62 -----EALRRI 67
L+R+
Sbjct: 63 AETCERTLKRL 73
>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
TRMFO; tRNA methyltransferase FAD folate, FAD,
flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus
thermophilus} PDB: 3g5q_A* 3g5r_A*
Length = 443
Score = 30.5 bits (69), Expect = 0.93
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAR 38
+ V +VG GL GS +A + V L+E R
Sbjct: 2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMR 33
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 30.4 bits (68), Expect = 0.97
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 5 SKKSVVIVG-GGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEG 49
K+V I+G GG +G+ + + + E + R+ G
Sbjct: 10 GPKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMG 55
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein,
oxidoreductase, enantioselectivity, directed evolution
variant; HET: FAD; 1.85A {Aspergillus niger} PDB:
2vvl_A* 2vvl_G*
Length = 495
Score = 30.3 bits (68), Expect = 0.99
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41
+ V+++GGG G + ++ L EAR+ I
Sbjct: 37 DGPWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRI 74
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase;
HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 30.6 bits (69), Expect = 1.00
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 9 VVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41
++VGGG G +A +V L E E +
Sbjct: 4 AIVVGGGFSGLKAARDLTNAGKKVLLLEGGERL 36
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP;
2.10A {Pyrococcus furiosus}
Length = 421
Score = 30.4 bits (69), Expect = 1.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 9 VVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41
V+VG GL G L+ A+N +E+ + E I
Sbjct: 3 AVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMI 35
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 30.0 bits (68), Expect = 1.1
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 9 VVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39
++I+G G VG+ + + V + +A
Sbjct: 5 LIIIGSGSVGAAAGYYATRAGLNVLMTDAHM 35
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 30.4 bits (69), Expect = 1.2
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 9 VVIVGGGLVGSLSACMFAKNQ-YEVNLYEAREDIR-NSGLSEGKSINLALSVRGREALRR 66
VV+VG G G SA + A + +V L E I N+ L+ G +N A + + +
Sbjct: 129 VVVVGSGGAG-FSAAISATDSGAKVILIEKEPVIGGNAKLAAG-GMNAAWTDQQKAK--- 183
Query: 67 IGLED 71
+ D
Sbjct: 184 -KITD 187
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle;
HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A*
1uxj_A* 1uxi_A*
Length = 309
Score = 29.8 bits (68), Expect = 1.3
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 6 KKSVVIVGGGLVGSLSACMFA-KNQYEVNLYEAREDIRNSGLSEGKSINLA 55
+K + I+G G VGS +A A K ++ L DI G+ +GK+++L
Sbjct: 2 RKKISIIGAGFVGSTTAHWLAAKELGDIVLL----DI-VEGVPQGKALDLY 47
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family
ketopantoate reductase, struct genomics, joint center
for structural genomics; HET: NDP BCN; 2.15A {Ralstonia
eutropha}
Length = 318
Score = 29.9 bits (68), Expect = 1.3
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 11/50 (22%)
Query: 1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED----IRNSGL 46
MK V I+G G VG M A+ +EV L AR I +GL
Sbjct: 20 MK------VAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGL 62
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex,
biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis
thaliana} SCOP: c.3.1.6
Length = 284
Score = 29.7 bits (66), Expect = 1.3
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQ-YEVNLYEAREDI 41
M ++ VV+VG G G +A +KN +V + E
Sbjct: 34 MITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSP 75
>3nvz_C Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine
oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE
I3A; 1.60A {Bos taurus} PDB: 3ns1_C* 3etr_C* 3nvv_C*
3nvw_C* 3nrz_C* 3nvy_C* 3eub_C* 3b9j_C* 1fiq_C* 3rca_C*
3sr6_C*
Length = 755
Score = 30.0 bits (68), Expect = 1.4
Identities = 8/24 (33%), Positives = 14/24 (58%), Gaps = 4/24 (16%)
Query: 177 EHGYME----LCIPPSEDNEVWLY 196
+H Y+E + IP E+ E+ L+
Sbjct: 170 DHFYLETHCTIAIPKGEEGEMELF 193
>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas,
oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten
maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*
Length = 404
Score = 29.8 bits (66), Expect = 1.5
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 9 VVIVGGGLVGSLSACMFAKNQ-YEVNLYEARED 40
V + GGG + + A EV + D
Sbjct: 5 VCVCGGGNGAHTLSGLAASRDGVEVRVLTLFAD 37
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate
dehydrogenase (EC...; 1574749, chorismate mutase type
II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae}
SCOP: a.100.1.12 c.2.1.6
Length = 298
Score = 29.6 bits (67), Expect = 1.5
Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYE------AREDIRNSGL 46
+ + K V++ G G +G L A + Y +++ + A + N+ +
Sbjct: 17 INSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAESILANADV 68
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase;
HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5
d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A
2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A*
1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Length = 322
Score = 29.8 bits (68), Expect = 1.6
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 4 NSKKSVVIVGGGLVGSLSA-CMFAKNQYEVNLYEAREDIRNSGLSEGKSINLA 55
K +V+VG G++G + A + KN +V L+ DI + GK+++ +
Sbjct: 2 APKAKIVLVGSGMIGGVMATLIVQKNLGDVVLF----DI-VKNMPHGKALDTS 49
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann,
PSI, M structural genomics; 1.70A {Archaeoglobus
fulgidus}
Length = 141
Score = 28.8 bits (65), Expect = 1.6
Identities = 9/71 (12%), Positives = 20/71 (28%), Gaps = 1/71 (1%)
Query: 1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRG 60
M N + +++G G +V + ++ L + +
Sbjct: 1 MTENGRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIEL-LEDEGFDAVIADPTD 59
Query: 61 REALRRIGLED 71
R + LE
Sbjct: 60 ESFYRSLDLEG 70
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura
genomics, protein structure initiative; HET: FAD NDP;
2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5
PDB: 2gvc_A* 1vqw_A*
Length = 447
Score = 29.9 bits (67), Expect = 1.6
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 1 MKCNSKKSVVIVGGGLVG--SLSACMFAKNQYEVNLYEAREDI 41
M + + + I+G G G + A + K +V L+E R
Sbjct: 1 MCLPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSP 43
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural
genomics, center structural genomics of infectious
diseases, csgid; 2.20A {Francisella tularensis}
Length = 321
Score = 29.4 bits (67), Expect = 1.8
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 5 SKKSVVIVGGGLVGSLSACMFA-KNQYEVNLYEAREDIRNSGLSEGKSINLA 55
++K + +VG G +G A + K +V L+ DI G+ GK+++L
Sbjct: 4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLF----DI-AQGMPNGKALDLL 50
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 29.4 bits (66), Expect = 1.9
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 1 MKCNSKKSVVIVGGGLVGS 19
M S++IVG G G+
Sbjct: 1 MAVTKSSSLLIVGAGTWGT 19
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase
(phospho), phosphatase, hydrolase (phosp glycolysis,
bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus}
SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A*
1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Length = 469
Score = 29.6 bits (66), Expect = 1.9
Identities = 21/120 (17%), Positives = 46/120 (38%), Gaps = 9/120 (7%)
Query: 35 YEAR-EDIRNSGLSEGKSINLALSVRGREALRRIGLEDKLL--AHGIPMRARMIHGQNGK 91
+ R +D +G+S L R + + ++ +L H MR + + +
Sbjct: 348 FALRDQDKYRYRYPKGESY-EDLVQRLEPVIMELERQENVLVICHQAVMRCLLAYFLDKA 406
Query: 92 LREIPYDPV--HNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTEDNSETKITDNQLI 149
E+PY H ++L + I L+V + N R ++ ++ ++ L+
Sbjct: 407 AEELPYLKCPLHTVLKLTPVAYGCKV---ESIFLNVAAVNTHRDRPQNVDISRPSEEALV 463
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid
cycle, structural genomics; HET: ADP; 2.25A {Brucella
melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Length = 324
Score = 29.4 bits (67), Expect = 1.9
Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 5 SKKSVVIVGGGLVGSLSACMFA-KNQYEVNLYEAREDIRNSGLSEGKSINLA 55
++ + ++G G++G A + K +V L+ DI G +GK +++A
Sbjct: 6 ARNKIALIGSGMIGGTLAHLAGLKELGDVVLF----DI-AEGTPQGKGLDIA 52
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 29.7 bits (67), Expect = 2.0
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 9 VVIVGGGLVGSLSACMFAKNQ-YEVNLYEAREDIR-NSGLSEGKSINLALSVRGREALRR 66
VVI+G G G L+A + A++ +V L E N+ L+ G +N A + +
Sbjct: 129 VVIIGSGGAG-LAAAVSARDAGAKVILLEKEPIPGGNTKLAAG-GMNAAETKPQAKL--- 183
Query: 67 IGLED 71
G+ED
Sbjct: 184 -GIED 187
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome,
transcription, LSD1, alternative splicing, chromatin
regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens}
SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A*
3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A*
2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Length = 662
Score = 29.5 bits (65), Expect = 2.2
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41
+ V+I+G G+ G +A +V L EAR+ +
Sbjct: 102 LPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV 142
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG,
structural genomics, PSI-2, prote structure initiative;
HET: FAD; 2.15A {Vibrio parahaemolyticus}
Length = 549
Score = 29.2 bits (65), Expect = 2.2
Identities = 23/164 (14%), Positives = 49/164 (29%), Gaps = 38/164 (23%)
Query: 4 NSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIR--------------------- 42
N + +++G G G + + A+ + + E +++R
Sbjct: 105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNV 164
Query: 43 ------NSGLSEGKSINLALSVRGREALRRIGLEDKLLAHGIP---MRARMIHGQNGKLR 93
S+GK L V+ R + + + G P + H KL
Sbjct: 165 QFGEGGAGTFSDGK---LYSQVKDPNFYGRKVITE-FVEAGAPEEILYVSKPHIGTFKLV 220
Query: 94 EIPYDPVHNQVELEQYPDCNIYFQHKLINLDVNSGNVTFYRTED 137
+ + I F ++ +L + G +T +
Sbjct: 221 TM----IEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSN 260
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog
complex, oxidoreductase; HET: A3D; 2.00A
{Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A*
2fm3_A
Length = 317
Score = 29.0 bits (66), Expect = 2.3
Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 6 KKSVVIVGGGLVGSLSACMFA-KNQYEVNLYEAREDIRNSGLSEGKSINLA 55
++ + ++G G +G A + N +V L+ DI G+ +GK++++
Sbjct: 4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLF----DI-AEGIPQGKALDIT 49
>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA,
ketopantoate reductase, rossman fold, monomer, APO,
oxidoreductase; 1.70A {Escherichia coli} SCOP:
a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*
Length = 291
Score = 29.1 bits (66), Expect = 2.4
Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 11/68 (16%)
Query: 1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGL----SEGKSINLAL 56
MK + ++G G +G L K +EV + R + ++G N +L
Sbjct: 1 MK------ITVLGCGALGQLWLTALCKQGHEVQGW-LRVPQPYCSVNLVETDGSIFNESL 53
Query: 57 SVRGREAL 64
+ + L
Sbjct: 54 TANDPDFL 61
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural
genomics consortium, SGC, oxidoreductase; HET: CIT APR;
2.20A {Cryptosporidium parvum}
Length = 328
Score = 29.0 bits (66), Expect = 2.4
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 1 MKCNSKKSVVIVGGGLVGSLSACMFA-KNQYEVNLYEAREDIRNSGLSEGKSINLA 55
KK + I+G G +GS A + K+ +V ++ DI G+ +GK+++L
Sbjct: 10 TVIMRKK-ISIIGAGQIGSTIALLLGQKDLGDVYMF----DI-IEGVPQGKALDLN 59
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure,
alpha-beta structure, structural genomics, protein
structure initiative; HET: MSE; 2.00A {Enterococcus
faecalis}
Length = 316
Score = 29.2 bits (66), Expect = 2.5
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 10/50 (20%)
Query: 1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED----IRNSGL 46
MK + I G G +GS M + +V L + IR +GL
Sbjct: 4 MK------IAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGL 47
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 29.1 bits (66), Expect = 2.7
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 9 VVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39
V++GGG++GS A AK L+E+
Sbjct: 20 AVVIGGGIIGSAIAYYLAKENKNTALFESGT 50
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 27.8 bits (62), Expect = 2.9
Identities = 7/28 (25%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 6 KKSVVIVGGGLVGSLSACMFAKN-QYEV 32
+ ++ +VG G +G + A + + Y V
Sbjct: 5 RWNICVVGAGKIGQMIAALLKTSSNYSV 32
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating
complex, structural GEN PSI-2-2, protein structure
initiative; HET: AMP; 3.45A {Thermotoga maritima}
Length = 218
Score = 28.3 bits (64), Expect = 3.0
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 9 VVIVGGGLVGSLSACMFAKNQYEVNLYEARED 40
V+I+GG A +Y V + +
Sbjct: 3 VIIIGGETTAYYLARSMLSRKYGVVIINKDRE 34
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A
{Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Length = 326
Score = 28.6 bits (65), Expect = 3.0
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 12/59 (20%)
Query: 1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE----DIRNSGLSEGKSINLA 55
M + K V ++G G VG S+ FA + E D+ N + G ++L
Sbjct: 1 MNKHVNK-VALIGAGFVG--SSYAFALINQGI----TDELVVIDV-NKEKAMGDVMDLN 51
>1tib_A Lipase; hydrolase(carboxylic esterase); 1.84A {Thermomyces
lanuginosus} SCOP: c.69.1.17 PDB: 1dt3_A 1dt5_A 1du4_A
1ein_A* 1dte_A 4dyh_A* 4ea6_A 1gt6_A*
Length = 269
Score = 28.7 bits (64), Expect = 3.1
Identities = 7/38 (18%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 1 MKCNSKKSVVIVG---GGLVGSLSACMFAKNQYEVNLY 35
++ + VV G GG + +++ N Y+++++
Sbjct: 132 VREHPDYRVVFTGHSLGGALATVAGADLRGNGYDIDVF 169
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain,
NAD, RCK domain, potassium transport, potassium
channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus
jannaschii} SCOP: c.2.1.9
Length = 140
Score = 27.9 bits (63), Expect = 3.1
Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Query: 1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED 40
M ++I G G VG A ++ +++ L + +D
Sbjct: 5 MY------IIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKD 38
>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold,
oxidoreductase; 2.20A {Caenorhabditis elegans}
Length = 460
Score = 28.8 bits (65), Expect = 3.1
Identities = 14/56 (25%), Positives = 18/56 (32%), Gaps = 5/56 (8%)
Query: 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSV-RGR 61
SV I+GGG +G A F E L E + + A R
Sbjct: 55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ----RCKQELEVMYAREKSFKR 106
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 29.2 bits (64), Expect = 3.2
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41
+ V+I+G G+ G +A +V L EAR+ +
Sbjct: 273 LPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV 313
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin
contain oxidoreductase, monoamine oxidase, NAD,
extracellular, oxidoreductase; HET: FAD; 2.50A {Homo
sapiens}
Length = 342
Score = 28.6 bits (62), Expect = 3.3
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 7 KSVVIVGGGLVGSLSACMFAKN---QYEVNLYEAREDI 41
V+IVG G+ GSL A + + + +++ +D
Sbjct: 2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDS 39
>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+],
cytoplasmic; two independent domains, GXGXXG motif,
oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A*
1wpq_A* 2pla_A*
Length = 354
Score = 28.7 bits (65), Expect = 3.4
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 9/60 (15%)
Query: 1 MKCNSKKSVVIVGGGLVGSLSACMFAKN-------QYEVNLYEAREDIRNSGLSEGKSIN 53
+ + K V IVG G GS A + N V ++ EDI L+E IN
Sbjct: 3 LGSMASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTE--IIN 60
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold,
cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A
{Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Length = 326
Score = 28.6 bits (65), Expect = 3.7
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 11/59 (18%)
Query: 1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE----DIRNSGLSEGKSINLA 55
+ + V++VG G VG S+ +A + A+E DI ++G +I+L+
Sbjct: 4 ITDKDHQKVILVGDGAVG--SSYAYAMVLQGI----AQEIGIVDI-FKDKTKGDAIDLS 55
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas;
HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB:
3nye_A* 3nyf_A* 3sm8_A*
Length = 381
Score = 28.7 bits (65), Expect = 3.7
Identities = 10/71 (14%), Positives = 23/71 (32%), Gaps = 10/71 (14%)
Query: 9 VVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI------RNSGL---SEGKSINLALSVR 59
+++G G+ G+ + + + V + E R++ + G AL+
Sbjct: 12 YLVIGAGIAGASTGYWLSAHG-RVVVLEREAQPGYHSTGRSAAHYTVAYGTPQVRALTAA 70
Query: 60 GREALRRIGLE 70
R
Sbjct: 71 SRAFFDNPPAG 81
>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics,
PANE, unknown function, cytoplasm, NADP,
oxidoreductase; 1.90A {Bacillus subtilis}
Length = 307
Score = 28.4 bits (64), Expect = 3.8
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 11/50 (22%)
Query: 1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARED----IRNSGL 46
+K + I+GGG VG L A + ++V + R++ I++ G+
Sbjct: 3 LK------IGIIGGGSVGLLCAYYLSLY-HDVTVVTRRQEQAAAIQSEGI 45
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant,
homotetramer, GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 28.6 bits (63), Expect = 3.8
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 9 VVIVGGGLVGSLSACMFAKNQYEVNLYEA 37
VVIVG G +G A Y+V +++
Sbjct: 49 VVIVGSGPIGCTYARELVGAGYKVAMFDI 77
>3buv_A 3-OXO-5-beta-steroid 4-dehydrogenase; 5-beta-reductase, catalytic
tetrad, hepes, NADP, bIle catabolism, disease mutation,
lipid metabolism; HET: NAP EPE; 1.35A {Homo sapiens}
PDB: 3bur_A* 3bv7_A* 3caq_A* 3cas_A* 3cav_A* 3g1r_A*
3cot_A* 3dop_A* 3cmf_A* 3uzx_A* 3uzw_A* 3uzy_A* 3uzz_A*
Length = 326
Score = 28.3 bits (64), Expect = 3.9
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 7/31 (22%)
Query: 94 EIPYDPVHNQVELEQYPDCNIYF-QHKLINL 123
+ + PV NQVE C+ YF Q KL+
Sbjct: 184 GLKHKPVSNQVE------CHPYFTQPKLLKF 208
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G*
3cpi_G 3cph_G 3cpj_G*
Length = 453
Score = 28.7 bits (63), Expect = 4.0
Identities = 4/31 (12%), Positives = 17/31 (54%)
Query: 9 VVIVGGGLVGSLSACMFAKNQYEVNLYEARE 39
V+++G G+ + + + + + +V + ++
Sbjct: 14 VIVLGTGITECILSGLLSVDGKKVLHIDKQD 44
>3h09_A IGA1 protease, immunoglobulin A1 protease; serine protease, beta
helix, hydrolase, M protease, secreted, transmembrane,
virulence; 1.75A {Haemophilus influenzae}
Length = 989
Score = 28.5 bits (62), Expect = 4.2
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 113 NIYFQHKLINLDVNSGNVTFYRTEDNSETKITDN 146
+IYF + LD N N+TF + + N
Sbjct: 493 SIYFGFRGGRLDANGNNLTFEHIRNIDDGARLVN 526
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase;
2.87A {Aeropyrum pernix}
Length = 308
Score = 28.3 bits (64), Expect = 4.2
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 9 VVIVGGGLVGSLSACMFA-KNQYEVNLYEAREDIRNSGLSEGKSINLA 55
+ I+G G VG +A M + ++ L G +G++++LA
Sbjct: 2 ITILGAGKVGMATAVMLMMRGYDDLLLI----AR-TPGKPQGEALDLA 44
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase,
oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
PDB: 3a63_A* 3abi_A*
Length = 365
Score = 28.4 bits (63), Expect = 4.8
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 7/64 (10%)
Query: 6 KKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSI--NLALSVRGREA 63
V+I+G G +G A ++V + D+ N L + K L + +
Sbjct: 16 HMKVLILGAGNIGRAIAWDLKDE-FDVYIG----DVNNENLEKVKEFATPLKVDASNFDK 70
Query: 64 LRRI 67
L +
Sbjct: 71 LVEV 74
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein;
HET: AHZ; 2.70A {Neurospora crassa}
Length = 344
Score = 28.2 bits (62), Expect = 4.8
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 9 VVIVGGGLVGSLSACMFAKNQ--YEVNLYEAREDI 41
+VIVG G G +A + + + + + EA
Sbjct: 82 IVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAP 116
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP;
3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Length = 762
Score = 28.5 bits (64), Expect = 5.2
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 148 LIIGADGAYSGVRKCLMKQSMFNYSQTYIEHGYMELCIPPSEDNEVW 194
+IIG AY+G + + + + E + IP + N V
Sbjct: 494 VIIGGFEAYTGGLE------LMEGRKQFDELCIPFVVIPATVSNNVP 534
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding
domain, PSI-2, NYSGXRC, structur genomics, protein
structure initiative; 2.00A {Ralstonia solanacearum}
Length = 335
Score = 28.1 bits (63), Expect = 5.2
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 9 VVIVGGGLVGSLSACMFAKNQYEVNLYEARED----IRNSGL 46
+ IVG G VG A +N+ AR ++ +GL
Sbjct: 6 ICIVGAGAVGGYLGARLALAGEAINVL-ARGATLQALQTAGL 46
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase,
conformational change, peptide binding, ATP-binding,
cell inner membrane; HET: ADP; 3.10A {Thermotoga
maritima} PDB: 3din_A*
Length = 822
Score = 28.0 bits (63), Expect = 5.5
Identities = 7/38 (18%), Positives = 18/38 (47%), Gaps = 6/38 (15%)
Query: 297 EKIEKMFDNTSTYKSRHINFIH------RSYHLYTVDI 328
K EK+ + Y +++ ++ ++ HL+ D+
Sbjct: 312 AKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDV 349
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural
genomics, secsg, protein struc initiative, PSI,
oxidoreductase; 3.01A {Clostridium thermocellum} SCOP:
c.2.1.5 d.162.1.1
Length = 318
Score = 27.8 bits (63), Expect = 5.6
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 12/59 (20%)
Query: 1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE----DIRNSGLSEGKSINLA 55
M + K V I+G G VG ++ F + A E D+ + G+++++
Sbjct: 3 MVKSRSK-VAIIGAGFVG--ASAAFTMALRQT----ANELVLIDV-FKEKAIGEAMDIN 53
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 989
Score = 28.3 bits (63), Expect = 5.8
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 6/47 (12%)
Query: 148 LIIGADGAYSGVRKCLMKQSMFNYSQTYIEHGYMELCIPPSEDNEVW 194
+IIG A++ + + + Y C+P + N V
Sbjct: 693 IIIGGFEAFTALYE------LDAARAQYPIFNIPMCCLPATVSNNVP 733
>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase,
peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A
{Arabidopsis thaliana}
Length = 725
Score = 28.0 bits (63), Expect = 6.1
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 8/59 (13%)
Query: 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSI---NLALSV-RGR 61
K V I+GGGL+GS A + Y V L ++ L G NL V +G
Sbjct: 313 KKVAIIGGGLMGSGIATALILSNYPVILK----EVNEKFLEAGIGRVKANLQSRVRKGS 367
>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway,
oxidoreductase, lipid metabolism, LY isomerase,
peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A
{Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A*
2x58_A*
Length = 742
Score = 28.0 bits (63), Expect = 6.1
Identities = 15/70 (21%), Positives = 22/70 (31%), Gaps = 13/70 (18%)
Query: 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSI---NLALSV-RGR- 61
SV ++G G +G A FA+ V + L K I L R
Sbjct: 317 SSVGVLGLGTMGRGIAISFARVGISVVAV----ESDPKQLDAAKKIITFTLEKEASRAHQ 372
Query: 62 ----EALRRI 67
A ++
Sbjct: 373 NGQASAKPKL 382
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD,
oxidoreductase, phosphoprotein; 1.80A {Staphylococcus
aureus} PDB: 3d4p_A* 3h3j_A*
Length = 317
Score = 27.8 bits (63), Expect = 6.6
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 11/59 (18%)
Query: 1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEARE----DIRNSGLSEGKSINLA 55
M VV++G G VG S+ F+ + E D+ ++ G ++L
Sbjct: 1 MNKFKGNKVVLIGNGAVG--SSYAFSLVNQSI----VDELVIIDL-DTEKVRGDVMDLK 52
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 26.9 bits (60), Expect = 6.9
Identities = 11/71 (15%), Positives = 25/71 (35%), Gaps = 1/71 (1%)
Query: 1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSINLALSVRG 60
M K ++G G G + +EV + E+ N+ + + + +
Sbjct: 1 MGRIKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNA-YASYATHAVIANATE 59
Query: 61 REALRRIGLED 71
L +G+ +
Sbjct: 60 ENELLSLGIRN 70
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase;
HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Length = 493
Score = 27.8 bits (62), Expect = 7.2
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 7 KSVVIVGGGLVGSLSACMFAKNQYEVNL 34
KS+ I+GGG +GS AC + +
Sbjct: 181 KSITIIGGGFLGSELACALGRKARALGT 208
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains;
transport, coiled coil, cytoskeleton, FAD, flavoprotein,
metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB:
2c4c_A* 2bra_A*
Length = 497
Score = 27.8 bits (61), Expect = 7.3
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 2 KCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI-RNSGL 46
+ + ++VG G G +A A V L E R R++ L
Sbjct: 88 QACTNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHNVL 133
>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme
type 1, L-bifunction enzyme, MFE-1, fatty acid beta
oxidation; 1.90A {Rattus norvegicus}
Length = 463
Score = 27.6 bits (62), Expect = 7.6
Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 13/70 (18%)
Query: 7 KSVVIVGGGLVGSLSACMFAKNQYEVNLYEAREDIRNSGLSEGKSI---NLALSV-RGR- 61
SV ++G G +G A FA+ V E+ L K I L R
Sbjct: 38 SSVGVLGLGTMGRGIAISFARVGISVVAVESDPK----QLDAAKKIITFTLEKEASRAHQ 93
Query: 62 ----EALRRI 67
A ++
Sbjct: 94 NGQASAKPKL 103
>1uwc_A Feruloyl esterase A; hydrolase, serine esterase, xylan degradation;
HET: NAG FER; 1.08A {Aspergillus niger} SCOP: c.69.1.17
PDB: 1uza_A* 2hl6_A* 2ix9_A* 1usw_A* 2bjh_A*
Length = 261
Score = 27.5 bits (61), Expect = 7.8
Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 1 MKCNSKKSVVIVG---GGLVGSLSACMFAKNQYEVNLY 35
++ + G G + +L+A + V LY
Sbjct: 119 ASQYPDYALTVTGHSLGASMAALTAAQLSATYDNVRLY 156
>1afs_A 3-alpha-HSD, 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase,
NAD; HET: NAP TES; 2.50A {Rattus norvegicus} SCOP:
c.1.7.1 PDB: 1lwi_A*
Length = 323
Score = 27.5 bits (62), Expect = 8.2
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 7/25 (28%)
Query: 99 PVHNQVELEQYPDCNIYF-QHKLIN 122
PV NQVE C++Y Q K+++
Sbjct: 186 PVCNQVE------CHLYLNQSKMLD 204
>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics,
putative 2-dehydropantoate 2-reductase, protein
structure initiative; 2.30A {Staphylococcus aureus
subsp}
Length = 294
Score = 27.2 bits (61), Expect = 8.4
Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 9/59 (15%)
Query: 1 MKCNSKKSVVIVGGGLVGSLSACMFAKNQYEVNLYEAR--EDIRNSGLSEGKSINLALS 57
+ V I+G G VG+ A ++ L R + I + + ++ +
Sbjct: 3 LS------VAIIGPGAVGTTIAYELQQSLPHTTLI-GRHAKTITYYTVPHAPAQDIVVK 54
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine,
transfera; HET: KCX; 1.90A {Propionibacterium
freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5
PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
Length = 539
Score = 27.6 bits (62), Expect = 8.4
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 343 LRGMKKNVPMPNKKLDMILESANGLG 368
LR +K MPN +L M+L N LG
Sbjct: 87 LRTFRKL--MPNSRLQMLLRGQNLLG 110
>3o3r_A Aldo-keto reductase family 1, member B7; aldose reductase like
protein, AKR1B14, oxidoreductase; HET: NAP; 1.86A
{Rattus norvegicus} PDB: 3qkz_A*
Length = 316
Score = 27.5 bits (62), Expect = 8.6
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 7/31 (22%)
Query: 94 EIPYDPVHNQVELEQYPDCNIYF-QHKLINL 123
+ + PV NQVE C+ Y Q KLI
Sbjct: 175 GLKHKPVTNQVE------CHPYLTQEKLIQY 199
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 27.5 bits (60), Expect = 8.7
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 4 NSKKSVVIVGGGLVGSLSACMFAKN-QYEVNLY 35
+ K+V+++G G V A N V +
Sbjct: 21 HMGKNVLLLGSGFVAQPVIDTLAANDDINVTVA 53
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase
structure, B enzymes, Zn2+ binding site, TIM-barrel
fold, lyase; 1.70A {Vibrio cholerae}
Length = 464
Score = 27.5 bits (62), Expect = 8.9
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 343 LRGMKKNVPMPNKKLDMILESANGLG 368
LR +K+ MPN L M+L N LG
Sbjct: 70 LRLLKQA--MPNTPLQMLLRGQNLLG 93
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 27.6 bits (62), Expect = 8.9
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 9 VVIVGGGLVGSLSACMFAKNQYEVNLYEAREDI 41
V++G G+ G A + + +V EA ED+
Sbjct: 12 AVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDV 44
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding,
biotin, disease mutation, gluconeogenesis, ligase, lipid
synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens}
PDB: 3bg9_A
Length = 718
Score = 27.7 bits (62), Expect = 9.0
Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 343 LRGMKKNVPMPNKKLDMILESANGLG 368
L+ +++ +PN M+L AN +G
Sbjct: 167 LQELREL--IPNIPFQMLLRGANAVG 190
>1s1p_A Aldo-keto reductase family 1 member C3; TIM-barrel, oxidoreductase;
HET: NAP; 1.20A {Homo sapiens} SCOP: c.1.7.1 PDB:
1s1r_A* 1s2a_A* 1s2c_A* 3uwe_A* 3r58_A* 3r43_A* 3r7m_A*
3r6i_A* 3r8h_A* 3r94_A* 3r8g_A* 1zq5_A* 1ry8_A* 1xf0_A*
1ry0_A* 2f38_A* 2fgb_A* 4dbs_A* 4dbu_A* 3gug_A* ...
Length = 331
Score = 27.1 bits (61), Expect = 9.9
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 7/26 (26%)
Query: 99 PVHNQVELEQYPDCNIYF-QHKLINL 123
PV NQVE C+ YF + KL++
Sbjct: 186 PVCNQVE------CHPYFNRSKLLDF 205
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.395
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,594,260
Number of extensions: 324639
Number of successful extensions: 1132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1094
Number of HSP's successfully gapped: 164
Length of query: 379
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 284
Effective length of database: 4,049,298
Effective search space: 1150000632
Effective search space used: 1150000632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.0 bits)