RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9143
(100 letters)
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 170 bits (433), Expect = 5e-52
Identities = 67/100 (67%), Positives = 82/100 (82%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
++R+DGRVA+VTGAGAGLGR YALL AERGA VVVNDLGG GDG S +AAD VV
Sbjct: 11 SDGKLRYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVD 70
Query: 61 EIRSKGGKAVPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
EIR GG+AV DYNSV+DG K+++TA++ FGR+DI++NNA
Sbjct: 71 EIRKAGGEAVADYNSVIDGAKVIETAIKAFGRVDILVNNA 110
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 163 bits (414), Expect = 1e-51
Identities = 67/100 (67%), Positives = 79/100 (79%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
M +RFDGRV +VTGAG GLGR+YAL AERGA VVVNDLGG G GK S AAD VV
Sbjct: 1 MASPLRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVE 60
Query: 61 EIRSKGGKAVPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
EIR +GGKAV +Y+SV G+K+V+TAL+ FGRID+V+NNA
Sbjct: 61 EIRRRGGKAVANYDSVEAGEKLVKTALDTFGRIDVVVNNA 100
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation,
peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Length = 604
Score = 161 bits (408), Expect = 2e-48
Identities = 58/97 (59%), Positives = 73/97 (75%)
Query: 4 QVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIR 63
V F +V I+TGAG GLG+ Y+L A+ GA VVVNDLGG +G G +SKAAD VV EI
Sbjct: 3 PVDFKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIV 62
Query: 64 SKGGKAVPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
GG AV DYN+V+DGDKIV+TA++NFG + ++INNA
Sbjct: 63 KNGGVAVADYNNVLDGDKIVETAVKNFGTVHVIINNA 99
Score = 117 bits (296), Expect = 1e-32
Identities = 38/101 (37%), Positives = 55/101 (54%), Gaps = 12/101 (11%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
V +V ++TGAGAGLG+ YA A+ GA VVVND A V
Sbjct: 314 GAPTVSLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKD-----------ATKTVD 362
Query: 61 EIRSKGGKAVPDYNSVVD-GDKIVQTALENFGRIDIVINNA 100
EI++ GG+A PD + V + I++ ++ +G IDI++NNA
Sbjct: 363 EIKAAGGEAWPDQHDVAKDSEAIIKNVIDKYGTIDILVNNA 403
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 145 bits (368), Expect = 1e-44
Identities = 50/103 (48%), Positives = 66/103 (64%), Gaps = 4/103 (3%)
Query: 2 PEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSS-KAADTVVA 60
DGRV IVTGAG G+GR++AL A GA VVVND+G DG S AA +VV
Sbjct: 20 GSMGVVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVD 79
Query: 61 EIRSKGGKAVPDYNSVVD---GDKIVQTALENFGRIDIVINNA 100
EI + GG+AV D ++V D ++QTA+E FG +D+++NNA
Sbjct: 80 EITAAGGEAVADGSNVADWDQAAGLIQTAVETFGGLDVLVNNA 122
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 94.5 bits (236), Expect = 2e-25
Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 18/106 (16%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
+ +R DG+ AI+TGAGAG+G+ A+ A GASVVV+D+ ++ AA+ VV
Sbjct: 3 NSDNLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDI---------NADAANHVVD 53
Query: 61 EIRSKGGKA------VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
EI+ GG+A + + + A+ G++DI++NNA
Sbjct: 54 EIQQLGGQAFACRCDITSEQEL---SALADFAISKLGKVDILVNNA 96
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 93.4 bits (233), Expect = 4e-25
Identities = 38/101 (37%), Positives = 55/101 (54%), Gaps = 18/101 (17%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
RF+ +V IVTG+G G+G++YA LA GA+VVV D+ +++AA+ V +I +
Sbjct: 6 RFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADI---------NAEAAEAVAKQIVAD 56
Query: 66 GGKA------VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
GG A V D S + L FG ID ++NNA
Sbjct: 57 GGTAISVAVDVSDPESA---KAMADRTLAEFGGIDYLVNNA 94
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 92.9 bits (232), Expect = 6e-25
Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 11/98 (11%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
+G+V ++TG+ GLG+S A+ A A VVVN A++V+ EI+
Sbjct: 4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRS--------KEDEANSVLEEIKKV 55
Query: 66 GGKAVP---DYNSVVDGDKIVQTALENFGRIDIVINNA 100
GG+A+ D D +VQ+A++ FG++D++INNA
Sbjct: 56 GGEAIAVKGDVTVESDVINLVQSAIKEFGKLDVMINNA 93
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 93.0 bits (232), Expect = 8e-25
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 12/98 (12%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
+V +++G G LG + A AE+GA +V+ + + + V ++
Sbjct: 8 LLTDKVVVISGVGPALGTTLARRCAEQGADLVLAAR---------TVERLEDVAKQVTDT 58
Query: 66 GGKAVP---DYNSVVDGDKIVQTALENFGRIDIVINNA 100
G +A+ D +V ++ +GR+D+VINNA
Sbjct: 59 GRRALSVGTDITDDAQVAHLVDETMKAYGRVDVVINNA 96
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 92.2 bits (230), Expect = 1e-24
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
+V IVTGAG+G+GR+ A A + VV +L + +V E+R
Sbjct: 4 SLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVEL---------LEDRLNQIVQELRGM 54
Query: 66 GGKAVP---DYNSVVDGDKIVQTALENFGRIDIVINNA 100
G + + D + D ++ V+ E + RID++ NNA
Sbjct: 55 GKEVLGVKADVSKKKDVEEFVRRTFETYSRIDVLCNNA 92
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 92.6 bits (231), Expect = 1e-24
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 12/98 (12%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
VA++TGAG+G+GR+ AL LA G +V + + V EI
Sbjct: 25 NQPSPVALITGAGSGIGRATALALAADGVTVGALGR---------TRTEVEEVADEIVGA 75
Query: 66 GGKAVPDYNSVVDGD---KIVQTALENFGRIDIVINNA 100
GG+A+ V D V+ + FG +DIV+ NA
Sbjct: 76 GGQAIALEADVSDELQMRNAVRDLVLKFGHLDIVVANA 113
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 91.9 bits (229), Expect = 2e-24
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 18/101 (17%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
+F+G+V +VTGAG +G + AL LAE G ++ + D+ + +A + A +R K
Sbjct: 4 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDM---------NREALEKAEASVREK 54
Query: 66 GGKA------VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
G +A V +V V + + +FG+ID + NNA
Sbjct: 55 GVEARSYVCDVTSEEAV---IGTVDSVVRDFGKIDFLFNNA 92
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 93.3 bits (232), Expect = 2e-24
Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
+P R G +TGA G+G++ AL A+ GA++V+ K T
Sbjct: 37 LPNTGRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKT--AQPHPKLLGTIYTAAE 94
Query: 61 EIRSKGGKAVP---DYNSVVDGDKIVQTALENFGRIDIVINNA 100
EI + GGKA+P D V+ A++ FG IDI++NNA
Sbjct: 95 EIEAVGGKALPCIVDVRDEQQISAAVEKAIKKFGGIDILVNNA 137
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 91.4 bits (228), Expect = 3e-24
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 12/103 (11%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
+ + + +VA+VT + G+G + A LA+ GA VVV+ + D VA
Sbjct: 6 VERRKPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSR---------KQENVDRTVA 56
Query: 61 EIRSKGGKAVP---DYNSVVDGDKIVQTALENFGRIDIVINNA 100
++ +G D +++V A+ G +DI+++NA
Sbjct: 57 TLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHGGVDILVSNA 99
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 91.0 bits (227), Expect = 4e-24
Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 9/103 (8%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
+ + +V ++ G LG A A ++V++ K S A+ +
Sbjct: 3 LTKYHDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYH------QAKDSDTANKLKD 56
Query: 61 EIRSKGGKAVP---DYNSVVDGDKIVQTALENFGRIDIVINNA 100
E+ +G K D ++ + K+ A + FG++DI IN
Sbjct: 57 ELEDQGAKVALYQSDLSNEEEVAKLFDFAEKEFGKVDIAINTV 99
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 90.7 bits (226), Expect = 4e-24
Identities = 39/98 (39%), Positives = 56/98 (57%), Gaps = 12/98 (12%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
+ VAIVTGA AG+GR+ A A+ GASVVV DL S+ A+ V A IR
Sbjct: 9 HLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDL---------KSEGAEAVAAAIRQA 59
Query: 66 GGKAVP---DYNSVVDGDKIVQTALENFGRIDIVINNA 100
GGKA+ + + +++ AL+ FG+I +++NNA
Sbjct: 60 GGKAIGLECNVTDEQHREAVIKAALDQFGKITVLVNNA 97
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 91.1 bits (227), Expect = 5e-24
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDG----DGKSSKAADTVVAE 61
GRVA +TGA G GRS+A+ LA GA ++ D+ S + D
Sbjct: 12 SLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARL 71
Query: 62 IRSKGGKAVPDYNSVVDGD---KIVQTALENFGRIDIVINNA 100
+ +G KA+ V D ++V +E FGR+D+V+ NA
Sbjct: 72 VEDQGRKALTRVLDVRDDAALRELVADGMEQFGRLDVVVANA 113
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 90.7 bits (226), Expect = 6e-24
Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 18/101 (17%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
R D RVAIVTG +G + LAE GA V++ DL A V ++R +
Sbjct: 10 RLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADL---------DEAMATKAVEDLRME 60
Query: 66 GGKA------VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
G V + SV V++ E GR+DI++ A
Sbjct: 61 GHDVSSVVMDVTNTESV---QNAVRSVHEQEGRVDILVACA 98
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.95A {Mycobacterium avium}
Length = 299
Score = 91.1 bits (227), Expect = 6e-24
Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDG---DGKSSKAADTVVAEI 62
+ +G+VA +TGA G GRS+A+ LA GA ++ D+ Q DG + V ++
Sbjct: 25 KVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQV 84
Query: 63 RSKGGKAVPDYNSVVDGD---KIVQTALENFGRIDIVINNA 100
+ G + + V D D V + GR+DIV+ NA
Sbjct: 85 EALGRRIIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANA 125
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 90.7 bits (226), Expect = 6e-24
Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 12/98 (12%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
R +G++AIVTGA +G+GR+ ALL A GA VVV + A + EI
Sbjct: 5 RLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTAR---------NGNALAELTDEIAGG 55
Query: 66 GGKAVP---DYNSVVDGDKIVQTALENFGRIDIVINNA 100
GG+A D + +V+ A+ FG +D NNA
Sbjct: 56 GGEAAALAGDVGDEALHEALVELAVRRFGGLDTAFNNA 93
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 90.3 bits (225), Expect = 9e-24
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDG---DGKSSKAADTVVAEI 62
G+VA +TGA G GR++A+ LA GA ++ DL Q + + V +
Sbjct: 10 PLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLV 69
Query: 63 RSKGGKAVPDYNSVVDGD---KIVQTALENFGRIDIVINNA 100
G + V V D + +Q L+ GR+DIV+ NA
Sbjct: 70 EDIGSRIVARQADVRDRESLSAALQAGLDELGRLDIVVANA 110
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 89.5 bits (223), Expect = 9e-24
Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 15/105 (14%)
Query: 2 PEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAE 61
GRV +VTGA G+G + A A GASVV+ ++ + V +
Sbjct: 7 AHPELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLG---------RTEASLAEVSDQ 57
Query: 62 IRSKGGKAVPDYNSVVDG------DKIVQTALENFGRIDIVINNA 100
I+S G ++ ++ FGR+D +++NA
Sbjct: 58 IKSAGQPQPLIIALNLENATAQQYRELAARVEHEFGRLDGLLHNA 102
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 89.9 bits (224), Expect = 1e-23
Identities = 32/101 (31%), Positives = 41/101 (40%), Gaps = 18/101 (17%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
G+ A++TGA G+G+ AL AE GA V V S A V EI
Sbjct: 29 DLSGKRALITGASTGIGKKVALAYAEAGAQVAVAAR---------HSDALQVVADEIAGV 79
Query: 66 GGKA------VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
GGKA V + V ++ G IDI + NA
Sbjct: 80 GGKALPIRCDVTQPDQV---RGMLDQMTGELGGIDIAVCNA 117
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 89.5 bits (223), Expect = 1e-23
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 11/97 (11%)
Query: 7 FDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKG 66
+ A+VTG+ G+G++ A+ LAE G ++V+N S KAA EI G
Sbjct: 2 EQNKCALVTGSSRGVGKAAAIRLAENGYNIVINYAR--------SKKAALETAEEIEKLG 53
Query: 67 GKAVP---DYNSVVDGDKIVQTALENFGRIDIVINNA 100
K + + ++ Q E FGR+D+ +NNA
Sbjct: 54 VKVLVVKANVGQPAKIKEMFQQIDETFGRLDVFVNNA 90
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 89.6 bits (223), Expect = 2e-23
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 11/101 (10%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
G+ +TGA G+G + AL A GA+V + + K + A + +
Sbjct: 3 TLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSA--VANPKLPGTIHSAAAAVNAA 60
Query: 66 GGKAVP------DYNSVVDGDKIVQTALENFGRIDIVINNA 100
GG+ + + + V V ++ FG IDI++NNA
Sbjct: 61 GGQGLALKCDIREEDQV---RAAVAATVDTFGGIDILVNNA 98
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
Length = 277
Score = 89.5 bits (223), Expect = 2e-23
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDG----DGKSSKAADTVVAE 61
+ +GRVA +TGA G GR++A+ +A GA ++ D+ G+ D S V
Sbjct: 8 KLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRL 67
Query: 62 IRSKGGKAVPDYNSVVDGD---KIVQTALENFGRIDIVINNA 100
+ + + V D D K+V + GR+DI++ NA
Sbjct: 68 VEAANRRIVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANA 109
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 88.7 bits (221), Expect = 2e-23
Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 15/105 (14%)
Query: 2 PEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAE 61
P+Q + R+ +VTGA G+GR A+ A GA+V++ ++ + V +
Sbjct: 5 PKQDLLNDRIILVTGASDGIGREAAMTYARYGATVILLG---------RNEEKLRQVASH 55
Query: 62 IRSKGGKAVPDYNSVVDG------DKIVQTALENFGRIDIVINNA 100
I + G+ + + ++ Q N+ R+D V++NA
Sbjct: 56 INEETGRQPQWFILDLLTCTSENCQQLAQRIAVNYPRLDGVLHNA 100
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 89.6 bits (223), Expect = 2e-23
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDG---KSSKAADTVVAEI 62
R +V +VTG G GRS+A+ LAE GA +++ D+ + + +S+ + E+
Sbjct: 7 RVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEV 66
Query: 63 RSKGGKAVPDYNSVVDGD---KIVQTALENFGRIDIVINNA 100
G KA V D + + A+ FG++D+V+ NA
Sbjct: 67 EKTGRKAYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANA 107
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 88.7 bits (221), Expect = 2e-23
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 20/101 (19%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
R ++A++TG G+GR+ A A GA + + DL A A IR+
Sbjct: 4 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADL-----------VPAPEAEAAIRNL 52
Query: 66 GGKA------VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
G + V V + + + FGR DI++NNA
Sbjct: 53 GRRVLTVKCDVSQPGDV---EAFGKQVISTFGRCDILVNNA 90
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 88.7 bits (221), Expect = 3e-23
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 11/98 (11%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
RF R +V GAG +GR+ A+ A+ GA+VV+ G +++ A T VAEI
Sbjct: 5 RFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNG--------AAEGAATAVAEIEKL 56
Query: 66 GGKAVP---DYNSVVDGDKIVQTALENFGRIDIVINNA 100
G A+ D + + + + A + FG I +++ A
Sbjct: 57 GRSALAIKADLTNAAEVEAAISAAADKFGEIHGLVHVA 94
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 89.2 bits (222), Expect = 5e-23
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGK---SSKAADTVVAEI 62
R G+VA +TGA G GR++A+ LA+ GA +V DL Q+ S + V +
Sbjct: 43 RLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLV 102
Query: 63 RSKGGKAVPDYNSVVDGD---KIVQTALENFGRIDIVINNA 100
+G + + V D +V AL FG IDI+++N
Sbjct: 103 EEQGRRIIARQADVRDLASLQAVVDEALAEFGHIDILVSNV 143
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 88.5 bits (220), Expect = 5e-23
Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 5/102 (4%)
Query: 2 PEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAE 61
P + G+ ++G G+G + A +A GA+V + + K T E
Sbjct: 2 PGSMSLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSA--EPHPKLPGTIYTAAKE 59
Query: 62 IRSKGGKAVP---DYNSVVDGDKIVQTALENFGRIDIVINNA 100
I GG+A+P D V +E FG IDI +NNA
Sbjct: 60 IEEAGGQALPIVGDIRDGDAVAAAVAKTVEQFGGIDICVNNA 101
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 88.0 bits (219), Expect = 7e-23
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGK-------SSKAADTV 58
R +G+VA VTGA G GRS+A+ LA+ GA ++ D+ + +
Sbjct: 8 RVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAET 67
Query: 59 VAEIRSKGGKAVPDYNSVVDGD---KIVQTALENFGRIDIVINNA 100
++ + V V D D V + +E GR+DI++ NA
Sbjct: 68 ADLVKGHNRRIVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANA 112
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 88.1 bits (219), Expect = 8e-23
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 15/101 (14%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
RF G+ I+TG+ G+GRS A++ A+ GA V + + + +I
Sbjct: 23 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGR---------NEDRLEETKQQILKA 73
Query: 66 GGKAVP------DYNSVVDGDKIVQTALENFGRIDIVINNA 100
G A D D I+ T L FG+IDI++NNA
Sbjct: 74 GVPAEKINAVVADVTEASGQDDIINTTLAKFGKIDILVNNA 114
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 87.2 bits (217), Expect = 1e-22
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 18/100 (18%)
Query: 7 FDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKG 66
+V I+TG +G+G+ A A+ GA VV+ + + + EI
Sbjct: 4 MKEKVVIITGGSSGMGKGMATRFAKEGARVVITGR---------TKEKLEEAKLEIEQFP 54
Query: 67 GKAVP------DYNSVVDGDKIVQTALENFGRIDIVINNA 100
G+ + + + + K+++ E FGRIDI+INNA
Sbjct: 55 GQILTVQMDVRNTDDI---QKMIEQIDEKFGRIDILINNA 91
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, protein structure initiati nysgrc; 2.30A
{Sinorhizobium meliloti}
Length = 271
Score = 87.2 bits (217), Expect = 1e-22
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 11/103 (10%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
M + G+ A VTG G+G + A LA GA+V + + +++ A VV+
Sbjct: 23 MMTSISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVN--------AAERAQAVVS 74
Query: 61 EIRSKGGKAVP---DYNSVVDGDKIVQTALENFGRIDIVINNA 100
EI GG+AV D ++ ++ +E G +DI++N+A
Sbjct: 75 EIEQAGGRAVAIRADNRDAEAIEQAIRETVEALGGLDILVNSA 117
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 86.8 bits (216), Expect = 1e-22
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 17/101 (16%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
G+ ++TG+ G+G + A L A GA V ++ + D +A +R+
Sbjct: 4 DLKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRK--------APANIDETIASMRAD 55
Query: 66 GGKA------VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
GG A + + ++V + FG ID++INNA
Sbjct: 56 GGDAAFFAADLATSEAC---QQLVDEFVAKFGGIDVLINNA 93
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A
{Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 87.3 bits (217), Expect = 1e-22
Identities = 38/98 (38%), Positives = 55/98 (56%), Gaps = 11/98 (11%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
G+VA+ TGAG G+GR A+ L RGASVVVN SSKAA+ VVAE++
Sbjct: 18 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGS--------SSKAAEEVVAELKKL 69
Query: 66 GGKAVP---DYNSVVDGDKIVQTALENFGRIDIVINNA 100
G + V D + + + A+ +FG +D V++N+
Sbjct: 70 GAQGVAIQADISKPSEVVALFDKAVSHFGGLDFVMSNS 107
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site
inhibitor complex, dinucleotide binding fold,
oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea}
SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Length = 283
Score = 87.3 bits (217), Expect = 1e-22
Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 11/98 (11%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
+G+VA+VTGAG G+GR A+ L RG V+VN S+++A+ VVA I+
Sbjct: 26 SLEGKVALVTGAGRGIGREMAMELGRRGCKVIVN--------YANSTESAEEVVAAIKKN 77
Query: 66 GGKAVP---DYNSVVDGDKIVQTALENFGRIDIVINNA 100
G A + V D ++ + A++ FG++DIV +N+
Sbjct: 78 GSDAACVKANVGVVEDIVRMFEEAVKIFGKLDIVCSNS 115
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 86.9 bits (216), Expect = 2e-22
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 15/101 (14%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
RF +VAI+TG+ G+GR+ A+L A GA V + ++ + +I +
Sbjct: 3 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGR---------HAERLEETRQQILAA 53
Query: 66 GGKAVP------DYNSVVDGDKIVQTALENFGRIDIVINNA 100
G D + D+I+ T L FG++DI++NNA
Sbjct: 54 GVSEQNVNSVVADVTTDAGQDEILSTTLGKFGKLDILVNNA 94
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU
SDR, fungi, oxidoreductase; HET: GOL; 1.48A
{Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A*
3itd_A
Length = 270
Score = 86.5 bits (215), Expect = 2e-22
Identities = 37/98 (37%), Positives = 57/98 (58%), Gaps = 11/98 (11%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
R DG+VA+VTG+G G+G + A+ L GA VVVN S+K A+ VV+EI++
Sbjct: 15 RLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVN--------YANSTKDAEKVVSEIKAL 66
Query: 66 GGKAVP---DYNSVVDGDKIVQTALENFGRIDIVINNA 100
G A+ D V + K+ A+ +FG +DI ++N+
Sbjct: 67 GSDAIAIKADIRQVPEIVKLFDQAVAHFGHLDIAVSNS 104
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 86.5 bits (215), Expect = 3e-22
Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 18/101 (17%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
G+VA VTG+ G+G + A A+ GA V + S A + ++
Sbjct: 31 SLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYN---------SHPADEKAEHLQKTY 81
Query: 66 GGKA------VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
G + + D SV ++ + ++FG ID+ + NA
Sbjct: 82 GVHSKAYKCNISDPKSV---EETISQQEKDFGTIDVFVANA 119
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 86.1 bits (214), Expect = 3e-22
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 12/98 (12%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
G+VA+VTGA G+G + A L GA VV+ + V EI +
Sbjct: 26 SLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTAR---------DVEKLRAVEREIVAA 76
Query: 66 GGKAVP---DYNSVVDGDKIVQTALENFGRIDIVINNA 100
GG+A D + L GR D+++NNA
Sbjct: 77 GGEAESHACDLSHSDAIAAFATGVLAAHGRCDVLVNNA 114
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 85.6 bits (213), Expect = 3e-22
Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 12/91 (13%)
Query: 10 RVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGKA 69
+A+VT A G + L + G +VV +D + AA+ E + G A
Sbjct: 2 VIALVTHARHFAGPAAVEALTQDGYTVVCHDAS--------FADAAERQRFESENPGTIA 53
Query: 70 VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
+ + +++V L++ ID +++N
Sbjct: 54 L----AEQKPERLVDATLQHGEAIDTIVSND 80
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: NAD; 2.10A {Mycobacterium
abscessus}
Length = 281
Score = 86.0 bits (214), Expect = 4e-22
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGK---SSKAADTVVAEI 62
F+G+ A++TG G+GRS+A+ LAE GA + + D D G ++ VA +
Sbjct: 7 DFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALV 66
Query: 63 RSKGGKAVPDYNSVVDGD---KIVQTALENFGRIDIVINNA 100
G + + V D V A + G IDI I NA
Sbjct: 67 EKTGRRCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNA 107
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 85.7 bits (213), Expect = 4e-22
Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 11/103 (10%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
+ Q D V +VTG G+G + L A +G V VN + +AAD VVA
Sbjct: 18 LYFQSMSDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAA--------NREAADAVVA 69
Query: 61 EIRSKGGKAVP---DYNSVVDGDKIVQTALENFGRIDIVINNA 100
I GG+AV D + D + FGR+D ++NNA
Sbjct: 70 AITESGGEAVAIPGDVGNAADIAAMFSAVDRQFGRLDGLVNNA 112
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 85.3 bits (212), Expect = 6e-22
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 17/101 (16%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
R A++T GLG+ L +G SV V + A +T+ +
Sbjct: 4 GRFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHS--------DTTAMETMKETYKDV 55
Query: 66 GGKA------VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
+ V + KIV+ A+ +FG+ID +INNA
Sbjct: 56 EERLQFVQADVTKKEDL---HKIVEEAMSHFGKIDFLINNA 93
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 85.3 bits (212), Expect = 6e-22
Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 17/101 (16%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
F + IVTG G+G ++ +A GA+V V ++ A + +
Sbjct: 11 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRS--------AADAVEVTEKVGKEF 62
Query: 66 GGKA------VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
G K V + + V K +Q + G I +I NA
Sbjct: 63 GVKTKAYQCDVSNTDIV---TKTIQQIDADLGPISGLIANA 100
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 85.3 bits (212), Expect = 7e-22
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 15/101 (14%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
RF + I+TG+ G+GR+ A+L A+ GA+V + SS+ + I
Sbjct: 3 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGR---------SSERLEETRQIILKS 53
Query: 66 GGKA------VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
G V D + D+I+ + L+ FG+ID+++NNA
Sbjct: 54 GVSEKQVNSVVADVTTEDGQDQIINSTLKQFGKIDVLVNNA 94
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 85.3 bits (212), Expect = 7e-22
Identities = 34/103 (33%), Positives = 46/103 (44%), Gaps = 20/103 (19%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
RF RV ++TG G+GLGR+ A+ LA GA + + D+ SS+ + A +
Sbjct: 10 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDV---------SSEGLEASKAAVLET 60
Query: 66 GGKA--------VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
A V D V + V E FGRID NNA
Sbjct: 61 APDAEVLTTVADVSDEAQV---EAYVTATTERFGRIDGFFNNA 100
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 84.9 bits (211), Expect = 8e-22
Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 11/96 (11%)
Query: 8 DGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGG 67
+VAIVTGA G+G + A LA G +VV+N G + AA+ V +I + GG
Sbjct: 26 TNKVAIVTGASRGIGAAIAARLASDGFTVVINYAG--------KAAAAEEVAGKIEAAGG 77
Query: 68 KAVP---DYNSVVDGDKIVQTALENFGRIDIVINNA 100
KA+ D + ++ TA E FG +D+++NNA
Sbjct: 78 KALTAQADVSDPAAVRRLFATAEEAFGGVDVLVNNA 113
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 84.6 bits (210), Expect = 1e-21
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 20/103 (19%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
+G+VA+VTGA G+GR++A L +GA V + D + +A A + +
Sbjct: 4 MVNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDW---------NLEAGVQCKAALHEQ 54
Query: 66 --GGKA------VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
K V D + + +++FGR+DI++NNA
Sbjct: 55 FEPQKTLFIQCDVADQQQL---RDTFRKVVDHFGRLDILVNNA 94
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 84.1 bits (209), Expect = 1e-21
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 16/98 (16%)
Query: 9 GRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGK 68
+VA+VTG G+GR + LA G + V DL Q + A + I + K
Sbjct: 2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEE-------QAAETIKLIEAADQK 54
Query: 69 A------VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
A V D + D + A E G D+++NNA
Sbjct: 55 AVFVGLDVTDKANF---DSAIDEAAEKLGGFDVLVNNA 89
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 84.2 bits (209), Expect = 2e-21
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 17/101 (16%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
+ VAIVTG G+G A LA G + + +G ++ V+AE+
Sbjct: 26 QKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIG--------DAEGVAPVIAELSGL 77
Query: 66 GGKA------VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
G + + D +S V + FGRID ++NNA
Sbjct: 78 GARVIFLRADLADLSSH---QATVDAVVAEFGRIDCLVNNA 115
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 83.7 bits (208), Expect = 2e-21
Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 11/95 (11%)
Query: 9 GRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGK 68
RVAIVTGA +G G + A RG V DL + +T + K
Sbjct: 2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAE--------TLEETARTHWHAYADK 53
Query: 69 AVPDYNSVVDGD---KIVQTALENFGRIDIVINNA 100
+ V D + +E FG ID+++NNA
Sbjct: 54 VLRVRADVADEGDVNAAIAATMEQFGAIDVLVNNA 88
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 83.8 bits (208), Expect = 3e-21
Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 15/103 (14%)
Query: 4 QVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIR 63
Q+ F R +VTG G+G+G+ A L GASV++ R+ D V E+
Sbjct: 6 QLSFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVG----RNPD-----KLAGAVQELE 56
Query: 64 SKGGKAVPDYNSVVD------GDKIVQTALENFGRIDIVINNA 100
+ G D + V GR+ V++ A
Sbjct: 57 ALGANGGAIRYEPTDITNEDETARAVDAVTAWHGRLHGVVHCA 99
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A
{Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 83.0 bits (206), Expect = 4e-21
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 18/97 (18%)
Query: 10 RVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGKA 69
+VA+VTGAG G+G++ AL L + G +V + D + A V +EI GG A
Sbjct: 3 KVALVTGAGQGIGKAIALRLVKDGFAVAIADY---------NDATAKAVASEINQAGGHA 53
Query: 70 ------VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
V D + V V+ A + G D+++NNA
Sbjct: 54 VAVKVDVSDRDQV---FAAVEQARKTLGGFDVIVNNA 87
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 83.3 bits (207), Expect = 4e-21
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 13/104 (12%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
+ G A+VTG G+G + LA GA V ++ K D +
Sbjct: 13 NEGRWSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCS---------RNEKELDECLE 63
Query: 61 EIRSKGGKAVP---DYNSVVDGDKIVQTALENF-GRIDIVINNA 100
R KG D S + DK++QT F G+++I++NNA
Sbjct: 64 IWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGKLNILVNNA 107
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 82.5 bits (205), Expect = 5e-21
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 17/101 (16%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
+ G+ AIVTG+ GLG++ A L GA++V+N +S + D E ++
Sbjct: 2 QLKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSP--------ASTSLDATAEEFKAA 53
Query: 66 GGKA------VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
G V + V + +V+TA++ FGRIDI++NNA
Sbjct: 54 GINVVVAKGDVKNPEDV---ENMVKTAMDAFGRIDILVNNA 91
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 82.6 bits (205), Expect = 6e-21
Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 15/98 (15%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
+G+VA++TGAG+G G A A+ GA VV+ D A+ V EI
Sbjct: 6 SLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDR---------DKAGAERVAGEI--- 53
Query: 66 GGKAVP---DYNSVVDGDKIVQTALENFGRIDIVINNA 100
G A+ D + D D V+ AL FG++DI++NNA
Sbjct: 54 GDAALAVAADISKEADVDAAVEAALSKFGKVDILVNNA 91
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 82.1 bits (204), Expect = 7e-21
Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 12/96 (12%)
Query: 8 DGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGG 67
G+ A+VTG+ GLG +YA LA GA V++N + V + KG
Sbjct: 8 TGKTALVTGSARGLGFAYAEGLAAAGARVILN---------DIRATLLAESVDTLTRKGY 58
Query: 68 KAVP---DYNSVVDGDKIVQTALENFGRIDIVINNA 100
A D + + +DI+INNA
Sbjct: 59 DAHGVAFDVTDELAIEAAFSKLDAEGIHVDILINNA 94
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 82.7 bits (205), Expect = 8e-21
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 18/101 (17%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
D VA+VTGA +G+G A L + G V V + T + E+R
Sbjct: 19 TQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCAR---------GEEGLRTTLKELREA 69
Query: 66 GGKA------VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
G +A V + + +V +E +G +D+++NNA
Sbjct: 70 GVEADGRTCDVRSVPEI---EALVAAVVERYGPVDVLVNNA 107
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 82.1 bits (204), Expect = 8e-21
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 13/104 (12%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
M + +G A+VTG G+G LA GASV ++ K + +
Sbjct: 1 MAGRWNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCS---------RNQKELNDCLT 51
Query: 61 EIRSKGGKAVP---DYNSVVDGDKIVQTALENF-GRIDIVINNA 100
+ RSKG K D +S + +++ T +F G+++I++NNA
Sbjct: 52 QWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGKLNILVNNA 95
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 82.2 bits (204), Expect = 9e-21
Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 9/100 (9%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
M GR AIVTG G+G + A L + GA+V + DL AA VVA
Sbjct: 4 MAGIFDLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADL---------DVMAAQAVVA 54
Query: 61 EIRSKGGKAVPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
+ + G D D +Q A++ G D++ NA
Sbjct: 55 GLENGGFAVEVDVTKRASVDAAMQKAIDALGGFDLLCANA 94
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 82.3 bits (204), Expect = 1e-20
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 12/96 (12%)
Query: 8 DGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGG 67
G++A+VTGA G+G + A A+ GA++V N + + D +A ++ G
Sbjct: 33 KGKIALVTGASYGIGFAIASAYAKAGATIVFN---------DINQELVDRGMAAYKAAGI 83
Query: 68 KAVP---DYNSVVDGDKIVQTALENFGRIDIVINNA 100
A D +V G IDI++NNA
Sbjct: 84 NAHGYVCDVTDEDGIQAMVAQIESEVGIIDILVNNA 119
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Length = 246
Score = 81.4 bits (202), Expect = 1e-20
Identities = 37/100 (37%), Positives = 58/100 (58%), Gaps = 17/100 (17%)
Query: 7 FDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKG 66
G+VA+VTGA G+GR+ A+ LA++GA+VVVN G + + A+ VV EI+ G
Sbjct: 2 LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAG--------NEQKANEVVDEIKKLG 53
Query: 67 GKA------VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
A V + V +V+ ++ FG++DI++NNA
Sbjct: 54 SDAIAVRADVANAEDV---TNMVKQTVDVFGQVDILVNNA 90
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 82.3 bits (204), Expect = 1e-20
Identities = 27/108 (25%), Positives = 53/108 (49%), Gaps = 16/108 (14%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
+P + A+VTGA +GR+ A+ L + G VV++ S++AA ++
Sbjct: 15 VPRGSHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHN--------SAEAAVSLAD 66
Query: 61 EI-RSKGGKA------VPDYNSVV-DGDKIVQTALENFGRIDIVINNA 100
E+ + + A + + N + ++I+ + FGR D+++NNA
Sbjct: 67 ELNKERSNTAVVCQADLTNSNVLPASCEEIINSCFRAFGRCDVLVNNA 114
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 81.8 bits (203), Expect = 2e-20
Identities = 38/100 (38%), Positives = 54/100 (54%), Gaps = 17/100 (17%)
Query: 7 FDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKG 66
R+A+VTGA G+GR+ AL LA GA V VN S+ AAD VVA I + G
Sbjct: 26 LTDRIALVTGASRGIGRAIALELAAAGAKVAVNYAS--------SAGAADEVVAAIAAAG 77
Query: 67 GKA------VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
G+A V + V + + +E +GR+D+++NNA
Sbjct: 78 GEAFAVKADVSQESEV---EALFAAVIERWGRLDVLVNNA 114
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural
genomics O infectious diseases, 3-layer(ABA) sandwich,
rossmann fold; HET: NAD; 1.25A {Salmonella enterica
subsp}
Length = 294
Score = 81.8 bits (203), Expect = 2e-20
Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
R R A+VTG +G+GR+ A+ A GA V +N L + + A V A I
Sbjct: 46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEED-------AQQVKALIEEC 98
Query: 66 GGKAVP---DYNSVVDGDKIVQTALENFGRIDIVINNA 100
G KAV D + +V A E G +DI+ A
Sbjct: 99 GRKAVLLPGDLSDESFARSLVHKAREALGGLDILALVA 136
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 82.0 bits (203), Expect = 2e-20
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
FDGR A+VTG +G+G + A A RGA +V++D+ D A + V +R +
Sbjct: 28 GFDGRAAVVTGGASGIGLATATEFARRGARLVLSDV----DQP-----ALEQAVNGLRGQ 78
Query: 66 GGKAVPDYNSVVDGDKI---VQTALENFGRIDIVINNA 100
G A V D++ A G +D+V +NA
Sbjct: 79 GFDAHGVVCDVRHLDEMVRLADEAFRLLGGVDVVFSNA 116
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 81.4 bits (202), Expect = 2e-20
Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 15/98 (15%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
+ RV IVTG G+G+GR+ A L A+ GA VVV D+ + AA V EI
Sbjct: 24 DLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADV---------NEDAAVRVANEI--- 71
Query: 66 GGKAVPDYNSVVDGD---KIVQTALENFGRIDIVINNA 100
G KA V +V+ +GR+D+++NNA
Sbjct: 72 GSKAFGVRVDVSSAKDAESMVEKTTAKWGRVDVLVNNA 109
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 81.5 bits (202), Expect = 2e-20
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 12/99 (12%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
+ A++TG+ +G+G + A LA+ GA++V+N G + TV E+
Sbjct: 22 SMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFG--------APDEIRTVTDEVAGL 73
Query: 66 -GGKAVPDYNSVVDGDKI---VQTALENFGRIDIVINNA 100
G + + +I + + FG DI++NNA
Sbjct: 74 SSGTVLHHPADMTKPSEIADMMAMVADRFGGADILVNNA 112
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 81.5 bits (202), Expect = 2e-20
Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 19/107 (17%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
+ +GR+A+VTG G G+GR A L+ G SVV+ D
Sbjct: 25 AQGKGSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGR---------RPDVLDAAAG 75
Query: 61 EIRSKGGKA-------VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
EI + G V D + V + F R+D+++NNA
Sbjct: 76 EIGGRTGNIVRAVVCDVGDPDQV---AALFAAVRAEFARLDLLVNNA 119
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 81.0 bits (201), Expect = 2e-20
Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 11/103 (10%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
M E GRVA+VTG GLG A LAE G SVVV +A++
Sbjct: 13 MKEVFDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASR--------NLEEASEAAQK 64
Query: 61 EIRSKGGKAVP---DYNSVVDGDKIVQTALENFGRIDIVINNA 100
G + + D ++ + K+++ E FG++D V+N A
Sbjct: 65 LTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFGKLDTVVNAA 107
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 81.0 bits (201), Expect = 3e-20
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 21/101 (20%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
R +G+ A++TG+ G+GR++A GA+V + D+ + A AEI
Sbjct: 5 RLEGKSALITGSARGIGRAFAEAYVREGATVAIADI---------DIERARQAAAEI--- 52
Query: 66 GGKA------VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
G A V +S+ D + +E+ G +DI++NNA
Sbjct: 53 GPAAYAVQMDVTRQDSI---DAAIAATVEHAGGLDILVNNA 90
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 81.1 bits (201), Expect = 3e-20
Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 15/98 (15%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
G+VAIVTGAGAG+G + A LA+ G V+ D+ AAD +I
Sbjct: 26 DLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADI---------DGDAADAAATKI--- 73
Query: 66 GGKAVP---DYNSVVDGDKIVQTALENFGRIDIVINNA 100
G A D + +V + FG +D ++ NA
Sbjct: 74 GCGAAACRVDVSDEQQIIAMVDACVAAFGGVDKLVANA 111
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 80.4 bits (199), Expect = 3e-20
Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 11/97 (11%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
V GAG +G A A G +V R+G+ +VAEI +
Sbjct: 4 TPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGR----RNGE-----KLAPLVAEIEAA 54
Query: 66 GGKAVPDYNSVVDGDKIVQT--ALENFGRIDIVINNA 100
GG+ V + D++ A + +++ I N
Sbjct: 55 GGRIVARSLDARNEDEVTAFLNAADAHAPLEVTIFNV 91
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 80.2 bits (199), Expect = 4e-20
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 17/99 (17%)
Query: 8 DGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGG 67
+ A+VTGA G+GRS AL LAE G +V VN S + A+ VV EI++KG
Sbjct: 3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVN--------YAGSKEKAEAVVEEIKAKGV 54
Query: 68 KA------VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
+ V D + V +++ + FG +D+++NNA
Sbjct: 55 DSFAIQANVADADEV---KAMIKEVVSQFGSLDVLVNNA 90
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 80.7 bits (200), Expect = 4e-20
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 11/98 (11%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
R DG+ A++TGA G+G A A GA +V++ RD + A
Sbjct: 17 RLDGKRALITGATKGIGADIARAFAAAGARLVLSG----RDVS----ELDAARRALGEQF 68
Query: 66 GGKAVPDYNSVVDGDKI---VQTALENFGRIDIVINNA 100
G + + D + A E FG +D+++NNA
Sbjct: 69 GTDVHTVAIDLAEPDAPAELARRAAEAFGGLDVLVNNA 106
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 80.7 bits (200), Expect = 5e-20
Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 18/100 (18%)
Query: 7 FDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKG 66
+ +VA+VTGAG G+GR A +LA+ + V+ ++ K+ D+VV EI+S G
Sbjct: 42 GENKVALVTGAGRGIGREIAKMLAKSVSHVICI---------SRTQKSCDSVVDEIKSFG 92
Query: 67 GKA------VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
++ V + +++ L +DI++NNA
Sbjct: 93 YESSGYAGDVSKKEEI---SEVINKILTEHKNVDILVNNA 129
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 80.2 bits (199), Expect = 5e-20
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 14/96 (14%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
F G+ +VTG G+GR+ A A GA V + DL V I
Sbjct: 3 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDL----------RPEGKEVAEAIGGA 52
Query: 66 GGKA-VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
+ + D + V+ A GR+D+++NNA
Sbjct: 53 FFQVDLEDERER---VRFVEEAAYALGRVDVLVNNA 85
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 80.3 bits (199), Expect = 5e-20
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 15/98 (15%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
+ G VA++TG +GLGR+ GA V V D +A+ + +
Sbjct: 2 KLTGEVALITGGASGLGRALVDRFVAEGARVAVLDK------------SAERLRELEVAH 49
Query: 66 GGKAVP---DYNSVVDGDKIVQTALENFGRIDIVINNA 100
GG AV D S+ D + + L FG+ID +I NA
Sbjct: 50 GGNAVGVVGDVRSLQDQKRAAERCLAAFGKIDTLIPNA 87
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 79.9 bits (198), Expect = 6e-20
Identities = 29/101 (28%), Positives = 39/101 (38%), Gaps = 17/101 (16%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
GR +VTG G+GR A + A GA+V V ++ V +
Sbjct: 7 DLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRS--------TADIDACVADLDQLG 58
Query: 66 GGKA------VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
GK V D D + A+E FG ID+V NA
Sbjct: 59 SGKVIGVQTDVSDRAQC---DALAGRAVEEFGGIDVVCANA 96
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 80.4 bits (199), Expect = 6e-20
Identities = 24/101 (23%), Positives = 35/101 (34%), Gaps = 17/101 (16%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
R +VTG G+GR A + A GA+V V + +
Sbjct: 38 DLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARS--------PRELSSVTAELGELG 89
Query: 66 GGKA------VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
G V D S +T ++ FG +D+V NA
Sbjct: 90 AGNVIGVRLDVSDPGSC---ADAARTVVDAFGALDVVCANA 127
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 79.9 bits (198), Expect = 7e-20
Identities = 21/104 (20%), Positives = 44/104 (42%), Gaps = 13/104 (12%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
++ + +VTG G+G + A GA + ++ + ++
Sbjct: 6 QSQRWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCA---------RNEYELNECLS 56
Query: 61 EIRSKGGKAVP---DYNSVVDGDKIVQTALENFG-RIDIVINNA 100
+ + KG + D + + +K++QT FG ++DI+INN
Sbjct: 57 KWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGKLDILINNL 100
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 79.6 bits (197), Expect = 7e-20
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 13/97 (13%)
Query: 8 DGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGG 67
+G+V +VTGA G+GR AL L + GA+V + G+ V E +S GG
Sbjct: 4 NGQVCVVTGASRGIGRGIALQLCKAGATVYIT---------GRHLDTLRVVAQEAQSLGG 54
Query: 68 KAVPDYNSVVDGDKIV----QTALENFGRIDIVINNA 100
+ VP ++ Q E GR+D+++NNA
Sbjct: 55 QCVPVVCDSSQESEVRSLFEQVDREQQGRLDVLVNNA 91
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 79.9 bits (198), Expect = 9e-20
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 15/98 (15%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
R + ++A++TGA +G+G + A GA V + D +AEI
Sbjct: 26 RLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGR---------RKDVLDAAIAEI--- 73
Query: 66 GGKAVP---DYNSVVDGDKIVQTALENFGRIDIVINNA 100
GG AV D ++ + D++ + GRID++ NA
Sbjct: 74 GGGAVGIQADSANLAELDRLYEKVKAEAGRIDVLFVNA 111
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 79.5 bits (197), Expect = 9e-20
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 14/97 (14%)
Query: 7 FDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKG 66
G+ A+VTG+ +G+G A +LA GA++V+N G +AEI G
Sbjct: 2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFG-----------DPAPALAEIARHG 50
Query: 67 GKAVPDYNSVVDGDKI---VQTALENFGRIDIVINNA 100
KAV + D +I A FG +DI++NNA
Sbjct: 51 VKAVHHPADLSDVAQIEALFALAEREFGGVDILVNNA 87
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 80.0 bits (198), Expect = 9e-20
Identities = 31/101 (30%), Positives = 42/101 (41%), Gaps = 19/101 (18%)
Query: 7 FDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK- 65
F G+VA +TG G GLG+ LL+ GA V+ R D +I S+
Sbjct: 24 FQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIAS----RKMD-----VLKATAEQISSQT 74
Query: 66 GGKAVP------DYNSVVDGDKIVQTALENFGRIDIVINNA 100
G K D + V V ++ G +IVINNA
Sbjct: 75 GNKVHAIQCDVRDPDMV---QNTVSELIKVAGHPNIVINNA 112
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 79.5 bits (197), Expect = 9e-20
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 15/98 (15%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
+ +VAI+TGA G+G + +LA GA VV+ DL + S
Sbjct: 8 ELENKVAIITGACGGIGLETSRVLARAGARVVLADL------------PETDLAGAAASV 55
Query: 66 GGKAVP---DYNSVVDGDKIVQTALENFGRIDIVINNA 100
G AV D + V ++ ++ FGR+DIV NNA
Sbjct: 56 GRGAVHHVVDLTNEVSVRALIDFTIDTFGRLDIVDNNA 93
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 79.6 bits (197), Expect = 1e-19
Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 18/99 (18%)
Query: 8 DGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGG 67
+ A VTG +G+G + A LA RG +V +K V +R+ G
Sbjct: 23 RPQTAFVTGVSSGIGLAVARTLAARGIAVYGCAR---------DAKNVSAAVDGLRAAGH 73
Query: 68 KA------VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
V + V V A+E FG I I++N+A
Sbjct: 74 DVDGSSCDVTSTDEV---HAAVAAAVERFGPIGILVNSA 109
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 79.6 bits (197), Expect = 1e-19
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 16/103 (15%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRS- 64
+ A++TG +G S A+ L ++G VVV+ S AA +VAE+ +
Sbjct: 8 ASECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRH--------SEGAAQRLVAELNAA 59
Query: 65 KGGKA------VPDYNSVVDG-DKIVQTALENFGRIDIVINNA 100
+ G A + +S++D + I+ + FGR D+++NNA
Sbjct: 60 RAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNA 102
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, infectious D center for structural genomics of
infectious diseases; HET: NAD; 2.05A {Bacillus anthracis
str} PDB: 3i3o_A*
Length = 291
Score = 79.5 bits (197), Expect = 1e-19
Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 21/103 (20%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
+ G+ ++TG +G+GR+ ++ A+ GA++ + L + D A+ + +
Sbjct: 44 KLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGD--------ANETKQYVEKE 95
Query: 66 GGKAVPDYNSVVDGD--------KIVQTALENFGRIDIVINNA 100
G K V ++ GD IVQ + G ++I++NN
Sbjct: 96 GVKCV-----LLPGDLSDEQHCKDIVQETVRQLGSLNILVNNV 133
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 79.1 bits (196), Expect = 1e-19
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 21/101 (20%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
R G+ +VTGA +G+GR+ L A GAS+V D + + +
Sbjct: 3 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDRE------------ERLLAEAVAAL 50
Query: 66 GGKA------VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
+A V D +V + + ALE FGR+ V + A
Sbjct: 51 EAEAIAVVADVSDPKAV---EAVFAEALEEFGRLHGVAHFA 88
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 79.2 bits (196), Expect = 1e-19
Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 17/100 (17%)
Query: 7 FDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKG 66
+VA +TG G+G+G A + G V+ + + G
Sbjct: 25 LRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASR--------SLPRVLTAARKLAGATG 76
Query: 67 GKAVP------DYNSVVDGDKIVQTALENFGRIDIVINNA 100
+ +P +V V AL+ FGRIDI+IN A
Sbjct: 77 RRCLPLSMDVRAPPAV---MAAVDQALKEFGRIDILINCA 113
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 78.7 bits (195), Expect = 2e-19
Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 17/101 (16%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
R+A VTG G+G S L + G VV +S + + ++
Sbjct: 10 VMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGP--------NSPRRVKWLEDQKAL 61
Query: 66 GGKA------VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
G V D++S + G ID+++NNA
Sbjct: 62 GFDFYASEGNVGDWDST---KQAFDKVKAEVGEIDVLVNNA 99
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann
fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus}
SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 78.3 bits (194), Expect = 2e-19
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 17/97 (17%)
Query: 10 RVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGKA 69
V +VTGA G+G++ AL L + G V+VN S+KAA+ V +I + GG+A
Sbjct: 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYAR--------SAKAAEEVSKQIEAYGGQA 53
Query: 70 ------VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
V V + +++TA++ +G ID+V+NNA
Sbjct: 54 ITFGGDVSKEADV---EAMMKTAIDAWGTIDVVVNNA 87
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 78.7 bits (195), Expect = 2e-19
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 20/107 (18%)
Query: 3 EQVRFDGRVAIVTGAGA--GLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
+Q+ G+V +VTGA G+G A AE GA+V + ++ A+ V
Sbjct: 14 DQLSLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYAS--------RAQGAEENVK 65
Query: 61 EIRSKGG-KA------VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
E+ G KA V Y S +K+V+ + +FG+ID I NA
Sbjct: 66 ELEKTYGIKAKAYKCQVDSYESC---EKLVKDVVADFGQIDAFIANA 109
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 79.2 bits (196), Expect = 2e-19
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 13/101 (12%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
G+VAIVTG G+G++ L E G++VV+ R + S A + +K
Sbjct: 15 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIAS----RKLERLKSAADELQANLPPTK 70
Query: 66 GGKAVP------DYNSVVDGDKIVQTALENFGRIDIVINNA 100
+ +P + V + +V++ L+ FG+I+ ++NN
Sbjct: 71 QARVIPIQCNIRNEEEV---NNLVKSTLDTFGKINFLVNNG 108
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 78.3 bits (194), Expect = 2e-19
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 13/96 (13%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
R + ++TGA G+GR+ L A+ GA +V D+ + +
Sbjct: 2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDI---------EEGPLREAAEAVGAH 52
Query: 66 GGKA-VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
V D SV ++ AL + GR+D V++ A
Sbjct: 53 PVVMDVADPASV---ERGFAEALAHLGRLDGVVHYA 85
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 78.4 bits (194), Expect = 3e-19
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 14/103 (13%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
M GR A+VTGAG+G+GR+ A A GA V+ + V
Sbjct: 23 MTGPFSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWG----------RTDGVKEVAD 72
Query: 61 EIRSKGGKAVP---DYNSVVDGDKIVQTALENFGRIDIVINNA 100
EI GG A D + + + L R+D+++NNA
Sbjct: 73 EIADGGGSAEAVVADLADLEGAANVAE-ELAATRRVDVLVNNA 114
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 78.4 bits (194), Expect = 3e-19
Identities = 33/101 (32%), Positives = 47/101 (46%), Gaps = 21/101 (20%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
+ ++AIVTGAG+G+GR+ A+ LA G V + A AEI
Sbjct: 25 KTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGR---------RLDALQETAAEI--- 72
Query: 66 GGKA------VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
G A V D +SV + +E FGR+D++ NNA
Sbjct: 73 GDDALCVPTDVTDPDSV---RALFTATVEKFGRVDVLFNNA 110
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural genomics,
secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 77.9 bits (193), Expect = 3e-19
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 12/95 (12%)
Query: 10 RVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGKA 69
R A++TGA G+GR+ AL LAE G ++ ++ G++ + A+ V E R +G
Sbjct: 2 RKALITGASRGIGRAIALRLAEDGFALAIH--------YGQNREKAEEVAEEARRRGSPL 53
Query: 70 VPDYNSVV----DGDKIVQTALENFGRIDIVINNA 100
V + + +V A E G +D ++NNA
Sbjct: 54 VAVLGANLLEAEAATALVHQAAEVLGGLDTLVNNA 88
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 78.4 bits (194), Expect = 3e-19
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 17/99 (17%)
Query: 8 DGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGG 67
RVA VTG GLG + + L + G +V V+ + T + R G
Sbjct: 24 AKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSE--------RNDHVSTWLMHERDAGR 75
Query: 68 KA------VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
V D+ S ++ + L +FG++D++INNA
Sbjct: 76 DFKAYAVDVADFESC---ERCAEKVLADFGKVDVLINNA 111
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 78.0 bits (193), Expect = 3e-19
Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 20/108 (18%)
Query: 1 MPEQVRFDGRVAIVTGA-GAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVV 59
+ G+V +VT A G G+G + A GA VV++D +
Sbjct: 14 IDGHGLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDY---------HERRLGETR 64
Query: 60 AEIRSKG-GKA------VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
++ G G+ V +V D ++ +E GR+D+++NNA
Sbjct: 65 DQLADLGLGRVEAVVCDVTSTEAV---DALITQTVEKAGRLDVLVNNA 109
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 78.4 bits (194), Expect = 3e-19
Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 12/101 (11%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
M R+ G+V +VTG G G+G GA VV+ D +
Sbjct: 1 MATGTRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDK---------DESGGRALEQ 51
Query: 61 EIRSKGGKAVP-DYNSVVDGDKIVQTALENFGRIDIVINNA 100
E+ G + D D +V + FGR+D V+NNA
Sbjct: 52 ELP--GAVFILCDVTQEDDVKTLVSETIRRFGRLDCVVNNA 90
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 78.1 bits (193), Expect = 3e-19
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 12/97 (12%)
Query: 7 FDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKG 66
G + ++TGAG G+GR A A+ + +V+ D + G + A+ + G
Sbjct: 29 VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWD----INKHG-----LEETAAKCKGLG 79
Query: 67 GKAVPDYNSVVDGDKIVQTA---LENFGRIDIVINNA 100
K + + I +A G + I++NNA
Sbjct: 80 AKVHTFVVDCSNREDIYSSAKKVKAEIGDVSILVNNA 116
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 78.0 bits (193), Expect = 3e-19
Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 18/100 (18%)
Query: 7 FDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKG 66
D +VAIVTGA G+GR+ AL LA RGA V+ + A+ + A + G
Sbjct: 26 LDKQVAIVTGASRGIGRAIALELARRGAMVIGT---------ATTEAGAEGIGAAFKQAG 76
Query: 67 GKA------VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
+ V D +V D +V++ L+ FG +++++NNA
Sbjct: 77 LEGRGAVLNVNDATAV---DALVESTLKEFGALNVLVNNA 113
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 77.9 bits (193), Expect = 3e-19
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 13/98 (13%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
R DG+VAI+TG G+G + A E GA V++ S + + +
Sbjct: 3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGR---------HSDVGEKAAKSVGT- 52
Query: 66 GGKAVPDYNSVVDGD---KIVQTALENFGRIDIVINNA 100
+ + D D K+ + FG + ++NNA
Sbjct: 53 PDQIQFFQHDSSDEDGWTKLFDATEKAFGPVSTLVNNA 90
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 77.7 bits (192), Expect = 4e-19
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 12/98 (12%)
Query: 7 FDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK- 65
G+VA+VTG+ +G+G A LA +GA +V+N G + + V A + ++
Sbjct: 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFG--------DAAEIEKVRAGLAAQH 53
Query: 66 GGKAVPDYNSVVDGDKI---VQTALENFGRIDIVINNA 100
G K + D + G+ + V A+ GRIDI++NNA
Sbjct: 54 GVKVLYDGADLSKGEAVRGLVDNAVRQMGRIDILVNNA 91
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 77.5 bits (192), Expect = 4e-19
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 21/101 (20%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
R G+ A+VTGA G+G++ A LA GA+V+V+D+ +++ A A I
Sbjct: 3 RLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDI---------NAEGAKAAAASI--- 50
Query: 66 GGKA------VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
G KA + D SV + G IDI++NNA
Sbjct: 51 GKKARAIAADISDPGSV---KALFAEIQALTGGIDILVNNA 88
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 77.1 bits (191), Expect = 5e-19
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 9/100 (9%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
M + + +G+VA+VTGA G+G++ A LLAERGA V+ S A +
Sbjct: 1 MSQFMNLEGKVALVTGASRGIGKAIAELLAERGAKVIGT---------ATSESGAQAISD 51
Query: 61 EIRSKGGKAVPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
+ G + + + +++ + FG +DI++NNA
Sbjct: 52 YLGDNGKGMALNVTNPESIEAVLKAITDEFGGVDILVNNA 91
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 77.6 bits (192), Expect = 5e-19
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 16/95 (16%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
F +VAIVTG +G+G + L GA VV L K+ V +
Sbjct: 11 EFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSL---------DEKSDVNVSDHFKID 61
Query: 66 GGKAVPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
V + V + V+ + +GRIDI++NNA
Sbjct: 62 ----VTNEEEV---KEAVEKTTKKYGRIDILVNNA 89
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 77.2 bits (191), Expect = 6e-19
Identities = 26/101 (25%), Positives = 37/101 (36%), Gaps = 21/101 (20%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
G+ I+TG GLG A GA VV+ D+ + E+
Sbjct: 2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADV---------LDEEGAATAREL--- 49
Query: 66 GGKA------VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
G A V ++V A E FG +D ++NNA
Sbjct: 50 GDAARYQHLDVTIEEDW---QRVVAYAREEFGSVDGLVNNA 87
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 76.8 bits (190), Expect = 8e-19
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 17/100 (17%)
Query: 7 FDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKG 66
G+V++VTG+ G+GR+ A LA G++V++ +A G
Sbjct: 5 LQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTS--------GERAKAVAEEIANKYG 56
Query: 67 GKA------VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
KA + S+ +K + IDI++NNA
Sbjct: 57 VKAHGVEMNLLSEESI---NKAFEEIYNLVDGIDILVNNA 93
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 76.8 bits (190), Expect = 9e-19
Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 13/101 (12%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
+ ++TGA +G AL L E G V+++ ++ A+ V
Sbjct: 19 FQGHMTLSSAPILITGASQRVGLHCALRLLEHGHRVIISY---------RTEHAS---VT 66
Query: 61 EIRSKGGKAVP-DYNSVVDGDKIVQTALENFGRIDIVINNA 100
E+R G A+ D++ + + V++NA
Sbjct: 67 ELRQAGAVALYGDFSCETGIMAFIDLLKTQTSSLRAVVHNA 107
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
genomics, putative 3-oxoacyl-(acyl carrier protei
reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus
anthracis str}
Length = 255
Score = 76.8 bits (190), Expect = 9e-19
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 17/102 (16%)
Query: 8 DGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGG 67
G+VA+VTGA G+GR+ A LA GA V ++ G + A+ V EI+S GG
Sbjct: 6 KGKVALVTGASRGIGRAIAKRLANDGALVAIH--------YGNRKEEAEETVYEIQSNGG 57
Query: 68 KAVP---DYNSVVDGDKIVQTALENF------GRIDIVINNA 100
A + S+ + + + + DI+INNA
Sbjct: 58 SAFSIGANLESLHGVEALYSSLDNELQNRTGSTKFDILINNA 99
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 76.4 bits (189), Expect = 1e-18
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 13/99 (13%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
G+VA++TG+ +G+G + A A+ GA +V+ R ++ K
Sbjct: 4 GISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDR---------LHEAARSLKEK 54
Query: 66 GGKAVP----DYNSVVDGDKIVQTALENFGRIDIVINNA 100
G V D + D +V++ +FG DI++NNA
Sbjct: 55 FGVRVLEVAVDVATPEGVDAVVESVRSSFGGADILVNNA 93
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 76.0 bits (188), Expect = 2e-18
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 14/95 (14%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
GR +VTGAG G+GR L GA VV R + + +
Sbjct: 4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVS----RTQA---------DLDSLVRE 50
Query: 66 GGKAVPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
P + D + + AL + G +D+++NNA
Sbjct: 51 CPGIEPVCVDLGDWEA-TERALGSVGPVDLLVNNA 84
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 76.4 bits (189), Expect = 2e-18
Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 17/95 (17%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
+V IVTGA G+GR+ A + G+ V+ + D + +
Sbjct: 5 DLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSI------HDPGEAKYDHIECD---- 54
Query: 66 GGKAVPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
V + + V + + +G I +++NNA
Sbjct: 55 ----VTNPDQV---KASIDHIFKEYGSISVLVNNA 82
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 76.0 bits (188), Expect = 2e-18
Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 18/100 (18%)
Query: 7 FDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKG 66
+ +VA+VTGA G+G A LA +GA+VV S +A+ ++ KG
Sbjct: 3 LNEKVALVTGASRGIGFEVAHALASKGATVVGT---------ATSQASAEKFENSMKEKG 53
Query: 67 GKA------VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
KA + D S+ IDI++NNA
Sbjct: 54 FKARGLVLNISDIESI---QNFFAEIKAENLAIDILVNNA 90
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 76.1 bits (188), Expect = 2e-18
Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 7 FDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKG 66
G+ A+VTG+ AG+G++ A L GA+V++N G+ + + + EIR++
Sbjct: 8 LKGKTALVTGSTAGIGKAIATSLVAEGANVLIN---------GRREENVNETIKEIRAQY 58
Query: 67 GKAVPDYNSV-VDGDKIVQTALENFGRIDIVINNA 100
A+ + ++ Q +E + ++DI+INN
Sbjct: 59 PDAILQPVVADLGTEQGCQDVIEKYPKVDILINNL 93
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 75.6 bits (187), Expect = 2e-18
Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 14/95 (14%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
F G A+VTGAG G+GR L GA VV R + + +
Sbjct: 4 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVT----RTNSD---------LVSLAKE 50
Query: 66 GGKAVPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
P + D D + AL G +D+++NNA
Sbjct: 51 CPGIEPVCVDLGDWDA-TEKALGGIGPVDLLVNNA 84
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 75.7 bits (187), Expect = 2e-18
Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 14/100 (14%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
VA+VTG +G+G + LL E GA+V + + +R +
Sbjct: 5 DLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCAR---------DGERLRAAESALRQR 55
Query: 66 --GGKAVPDYNSVVDGDKI---VQTALENFGRIDIVINNA 100
G + V+D ++ + G I++NNA
Sbjct: 56 FPGARLFASVCDVLDALQVRAFAEACERTLGCASILVNNA 95
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 75.3 bits (186), Expect = 3e-18
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 16/97 (16%)
Query: 4 QVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIR 63
+ F G+ VTGAG G+G + AL E GA V D ++ +++ D
Sbjct: 2 HMDFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQEQYPFATEVMD------- 54
Query: 64 SKGGKAVPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
V D V ++ Q L R+D ++N A
Sbjct: 55 ------VADAAQV---AQVCQRLLAETERLDALVNAA 82
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 75.3 bits (186), Expect = 3e-18
Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 15/98 (15%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
+ G+ AIV G G+G + L E GA V++ G++ + E
Sbjct: 5 NYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLT---------GRNESNIARIREEF--- 52
Query: 66 GGKAVP---DYNSVVDGDKIVQTALENFGRIDIVINNA 100
G + D + + + A + G ID++ NA
Sbjct: 53 GPRVHALRSDIADLNEIAVLGAAAGQTLGAIDLLHINA 90
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 75.3 bits (186), Expect = 4e-18
Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 15/95 (15%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
R +V ++TGA G+G +R VV +AD + +
Sbjct: 25 RNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRS--------IKPSADPDIHTVAG- 75
Query: 66 GGKAVPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
D + D+IV+ +E FGRID ++NNA
Sbjct: 76 ------DISKPETADRIVREGIERFGRIDSLVNNA 104
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 74.8 bits (185), Expect = 4e-18
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 15/98 (15%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
R G+VA+VTG +G+G LL GA V +D+ + A + AE+
Sbjct: 3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDI---------NEAAGQQLAAEL--- 50
Query: 66 GGKAVPDYNSVVDGD---KIVQTALENFGRIDIVINNA 100
G +++ + V ++ G +++++NNA
Sbjct: 51 GERSMFVRHDVSSEADWTLVMAAVQRRLGTLNVLVNNA 88
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 75.0 bits (185), Expect = 5e-18
Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Query: 9 GRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGK 68
G+V +VTG G+G+S +L VV + +S + + +
Sbjct: 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGV-------ARSEAPLKKLKEKYGDRFFY 54
Query: 69 AVPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
V D ++V A++ G+ID ++ NA
Sbjct: 55 VVGDITEDSVLKQLVNAAVKGHGKIDSLVANA 86
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 74.9 bits (185), Expect = 5e-18
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 15/98 (15%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
R G+VA+V+G G+G S+ + GA VV D+ + + AE+
Sbjct: 4 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDI---------LDEEGKAMAAEL--- 51
Query: 66 GGKAVPDYNSVVDGD---KIVQTALENFGRIDIVINNA 100
A + V V TA+ FG + +++NNA
Sbjct: 52 ADAARYVHLDVTQPAQWKAAVDTAVTAFGGLHVLVNNA 89
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 74.8 bits (185), Expect = 5e-18
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 11/96 (11%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
R DG A VTGAG+G+G A GA +++ D R+ A D E+ +
Sbjct: 8 RLDGACAAVTGAGSGIGLEICRAFAASGARLILID----REAA-----ALDRAAQELGAA 58
Query: 66 GGKAVP-DYNSVVDGDKIVQTALENFGRIDIVINNA 100
+ D A E + I++N+A
Sbjct: 59 VAARIVADVTDAEAMTAAAAEA-EAVAPVSILVNSA 93
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 75.5 bits (186), Expect = 6e-18
Identities = 24/103 (23%), Positives = 34/103 (33%), Gaps = 20/103 (19%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
F GR A VTG G+G L +G V + D D + D +A + ++
Sbjct: 5 DFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIAD----IRQD-----SIDKALATLEAE 55
Query: 66 GGKA--------VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
G V FG + I+ NNA
Sbjct: 56 GSGPEVMGVQLDVASREGF---KMAADEVEARFGPVSILCNNA 95
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 74.1 bits (183), Expect = 9e-18
Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 20/106 (18%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
R +A+VTGAG+G+GR+ ++ LA GA+V DL AA V +
Sbjct: 4 RLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDL---------DRAAAQETVRLLGGP 54
Query: 66 GGKAVPDYNSVV----------DGDKIVQTALENFGRI-DIVINNA 100
G K P + +++ F R +V++ A
Sbjct: 55 GSKEGPPRGNHAAFQADVSEARAARCLLEQVQACFSRPPSVVVSCA 100
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 73.8 bits (182), Expect = 1e-17
Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 21/104 (20%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
+AI+TGA G+G A LA G VV+ +S + + V EI
Sbjct: 4 EKQKGLAIITGASQGIGAVIAAGLATDGYRVVLI---------ARSKQNLEKVHDEIMRS 54
Query: 66 GGKA---------VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
+ D D ++ + +G +DI++N A
Sbjct: 55 NKHVQEPIVLPLDITDCTKA---DTEIKDIHQKYGAVDILVNAA 95
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 73.8 bits (182), Expect = 1e-17
Identities = 14/99 (14%), Positives = 28/99 (28%), Gaps = 12/99 (12%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
+ I A G+G + L +R V + + +
Sbjct: 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVI--------LDRVENPTALAELKAINP 53
Query: 66 GGKAVPDY----NSVVDGDKIVQTALENFGRIDIVINNA 100
V + K+++ + +DI+IN A
Sbjct: 54 KVNITFHTYDVTVPVAESKKLLKKIFDQLKTVDILINGA 92
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 74.1 bits (183), Expect = 1e-17
Identities = 26/100 (26%), Positives = 39/100 (39%), Gaps = 17/100 (17%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
R +VAI+TG G+G + A L GA VV+ D+ + V I S
Sbjct: 13 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADI---------ADDHGQKVCNNIGSP 63
Query: 66 GGKA-----VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
+ V V +V T + G++DI+ N
Sbjct: 64 DVISFVHCDVTKDEDV---RNLVDTTIAKHGKLDIMFGNV 100
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
dehydrogenase, methotrexate resistance, oxidoreductase;
HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Length = 291
Score = 73.9 bits (182), Expect = 2e-17
Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 29/114 (25%)
Query: 8 DGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK-G 66
VA+VTGA LGRS A L G +V ++ S+ A+ + A + ++
Sbjct: 8 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHR--------SAAEANALSATLNARRP 59
Query: 67 GKAV--------------------PDYNSVVDGDKIVQTALENFGRIDIVINNA 100
A+ ++V ++GR D+++NNA
Sbjct: 60 NSAITVQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNA 113
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 74.4 bits (183), Expect = 2e-17
Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 29/114 (25%)
Query: 8 DGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK-G 66
VA+VTGA LGRS A L G +V ++ S+ A+ + A + ++
Sbjct: 45 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHR--------SAAEANALSATLNARRP 96
Query: 67 GKAV--------------------PDYNSVVDGDKIVQTALENFGRIDIVINNA 100
A+ ++V ++GR D+++NNA
Sbjct: 97 NSAITVQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNA 150
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 73.0 bits (180), Expect = 2e-17
Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 12/91 (13%)
Query: 10 RVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGKA 69
AIVT G AL L+E G +V +D S K D + A +
Sbjct: 2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDE---------SFKQKDELEAFAETYPQLK 52
Query: 70 VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
++++ +G++D++++N
Sbjct: 53 PMSEQEP---AELIEAVTSAYGQVDVLVSND 80
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 73.4 bits (181), Expect = 3e-17
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 13/96 (13%)
Query: 8 DGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGG 67
GR+A+VTG G+G+ A L E GA V + + ++A + G
Sbjct: 28 AGRIALVTGGSRGIGQMIAQGLLEAGARVFIC---------ARDAEACADTATRLS-AYG 77
Query: 68 KAVP---DYNSVVDGDKIVQTALENFGRIDIVINNA 100
D +S ++ Q E R+DI++NNA
Sbjct: 78 DCQAIPADLSSEAGARRLAQALGELSARLDILVNNA 113
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 73.1 bits (180), Expect = 3e-17
Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 13/99 (13%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
G+ IVTGA G+GR A LA+ GA VVV R + VV+
Sbjct: 25 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTA----RSKE-----TLQKVVSHCLEL 75
Query: 66 GGKAVP----DYNSVVDGDKIVQTALENFGRIDIVINNA 100
G + + ++ V A + G +D++I N
Sbjct: 76 GAASAHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNH 114
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 72.1 bits (178), Expect = 4e-17
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 17/96 (17%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
R DG+V I+T A G+G++ AL A GA V+ D+ + + +
Sbjct: 3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDI---------NESKLQELEKYPGIQ 53
Query: 66 GGKA-VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
V + R+D++ N A
Sbjct: 54 TRVLDVTKKKQ-------IDQFANEVERLDVLFNVA 82
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 72.1 bits (178), Expect = 5e-17
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 22/97 (22%)
Query: 10 RVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGKA 69
R IVTG G G+G+ L E G V D+ K + A+ +
Sbjct: 3 RGVIVTGGGHGIGKQICLDFLEAGDKVCFIDI---------DEKRS----ADFAKERPNL 49
Query: 70 ------VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
V D ++ K V+ A+E RID+++NNA
Sbjct: 50 FYFHGDVADPLTL---KKFVEYAMEKLQRIDVLVNNA 83
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 72.2 bits (178), Expect = 5e-17
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 9/94 (9%)
Query: 7 FDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKG 66
GR A+VTGA G+G + A +GA V ++ G + A++
Sbjct: 25 LTGRKALVTGATGGIGEAIARCFHAQGAIVGLH---------GTREDKLKEIAADLGKDV 75
Query: 67 GKAVPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
+ + ++ + A IDI++NNA
Sbjct: 76 FVFSANLSDRKSIKQLAEVAEREMEGIDILVNNA 109
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 71.5 bits (176), Expect = 8e-17
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 17/100 (17%)
Query: 10 RVAIVTGAGAGLGRSYALLLAERGA------SVVVNDLGGQRDGDGKSSKAADTVVAEIR 63
+ ++TGAG G+GR+ AL A V+V +++ + + E R
Sbjct: 3 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVL--------SSRTAADLEKISLECR 54
Query: 64 SKGGKAVPDYNSVVDGD---KIVQTALENFGRIDIVINNA 100
++G + D ++ +E +G ID ++NNA
Sbjct: 55 AEGALTDTITADISDMADVRRLTTHIVERYGHIDCLVNNA 94
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 71.0 bits (175), Expect = 1e-16
Identities = 17/94 (18%), Positives = 44/94 (46%), Gaps = 13/94 (13%)
Query: 7 FDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKG 66
G+ +++TGA +G+G + A LL + G+ V+++ G + + ++ ++
Sbjct: 12 LTGKTSLITGASSGIGSAIARLLHKLGSKVIIS---------GSNEEKLKSLGNALKDNY 62
Query: 67 GKAVPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
V + + + ++ + +DI++ NA
Sbjct: 63 TIEVCN---LANKEE-CSNLISKTSNLDILVCNA 92
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 71.9 bits (177), Expect = 2e-16
Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 12/96 (12%)
Query: 7 FDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKG 66
DG+VA+VTGA G+G + A + A GA+VV D AA+ + G
Sbjct: 211 LDGKVAVVTGAARGIGATIAEVFARDGATVVAID----------VDGAAEDLKRVADKVG 260
Query: 67 GKAVP-DYNSVVDGDKIVQTALENFG-RIDIVINNA 100
G A+ D + DKI E+ G ++DI++NNA
Sbjct: 261 GTALTLDVTADDAVDKITAHVTEHHGGKVDILVNNA 296
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 70.3 bits (173), Expect = 2e-16
Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 17/95 (17%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
F+G+VA+VTGA G+G + L GA V V D A + +
Sbjct: 25 GFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADR------AVAGIAADLHLPGD---- 74
Query: 66 GGKAVPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
+ + D + GR+DIV+NNA
Sbjct: 75 ----LREAAYA---DGLPGAVAAGLGRLDIVVNNA 102
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 69.5 bits (171), Expect = 5e-16
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 15/98 (15%)
Query: 8 DGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRS--K 65
G++A+VT +GLG + AL LA GA +++ R+ + + + I S
Sbjct: 6 QGKLAVVTAGSSGLGFASALELARNGARLLLFS----RNRE-----KLEAAASRIASLVS 56
Query: 66 GGKAVP---DYNSVVDGDKIVQTALENFGRIDIVINNA 100
G + D D D++ + A + G DI++ +
Sbjct: 57 GAQVDIVAGDIREPGDIDRLFEKARD-LGGADILVYST 93
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 68.7 bits (169), Expect = 1e-15
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 18/98 (18%)
Query: 9 GRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGK 68
+V ++TGA G+G A L GA ++ LG +R + + EIR GG
Sbjct: 4 DKVILITGASGGIGEGIARELGVAGAKIL---LGARR------QARIEAIATEIRDAGGT 54
Query: 69 AVP------DYNSVVDGDKIVQTALENFGRIDIVINNA 100
A+ D +SV Q A++ +GRID+++NNA
Sbjct: 55 ALAQVLDVTDRHSV---AAFAQAAVDTWGRIDVLVNNA 89
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 68.3 bits (168), Expect = 1e-15
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 15/91 (16%)
Query: 10 RVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGKA 69
R A+VTG G+GR+ A L RG V + +AA ++ G
Sbjct: 3 RKALVTGGSRGIGRAIAEALVARGYRVAIASRN--------PEEAAQSL-------GAVP 47
Query: 70 VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
+P D +V+ ALE G + ++++ A
Sbjct: 48 LPTDLEKDDPKGLVKRALEALGGLHVLVHAA 78
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 67.6 bits (166), Expect = 2e-15
Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 15/95 (15%)
Query: 9 GRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGK 68
IVTGAG+GLGR+ + L ERG V + R + G
Sbjct: 3 LGHIIVTGAGSGLGRALTIGLVERGHQVSMMG----RRYQ-----RLQQQELLL---GNA 50
Query: 69 AVP---DYNSVVDGDKIVQTALENFGRIDIVINNA 100
+ D D D A+E G ++V++ A
Sbjct: 51 VIGIVADLAHHEDVDVAFAAAVEWGGLPELVLHCA 85
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase,
lactamase inhibitor, AN biosynthesis, NADPH,
oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces
clavuligerus} PDB: 2jap_A*
Length = 247
Score = 67.6 bits (166), Expect = 2e-15
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 18/101 (17%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
G+VA++TGA +G+G + A LA GA+V + +R + + E+ +
Sbjct: 4 ALQGKVALITGASSGIGEATARALAAEGAAVA---IAARR------VEKLRALGDELTAA 54
Query: 66 GGKAVP------DYNSVVDGDKIVQTALENFGRIDIVINNA 100
G K D V D V + +E G +DI++NNA
Sbjct: 55 GAKVHVLELDVADRQGV---DAAVASTVEALGGLDILVNNA 92
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 65.0 bits (159), Expect = 2e-14
Identities = 8/100 (8%), Positives = 25/100 (25%), Gaps = 18/100 (18%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
+ + + +V G LG + + + D + + + S
Sbjct: 14 LVPRGSHMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDF--RENPNADHSFTIK---- 67
Query: 61 EIRSKGGKAVPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
+ +++ ++D + A
Sbjct: 68 ---------DSGEEEI---KSVIEKINSKSIKVDTFVCAA 95
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
1.60A {Thermococcus sibiricus}
Length = 235
Score = 64.9 bits (159), Expect = 2e-14
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 19/100 (19%)
Query: 8 DGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGG 67
+ +VA++TGA G+G + A LA G ++ LG + + + E+ + G
Sbjct: 1 EMKVAVITGASRGIGEAIARALARDGYALA---LGARS------VDRLEKIAHELMQEQG 51
Query: 68 KA-------VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
V SV ++ + LE FG +D+V+ NA
Sbjct: 52 VEVFYHHLDVSKAESV---EEFSKKVLERFGDVDVVVANA 88
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 65.0 bits (159), Expect = 2e-14
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
G VA++TG +GLG + A L +GAS V+ DL + + ++ +
Sbjct: 9 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDL---------PNSGGEAQAKKLGNN 59
Query: 66 GGKAVPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
A D S D + A FGR+D+ +N A
Sbjct: 60 CVFAPADVTSEKDVQTALALAKGKFGRVDVAVNCA 94
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 64.9 bits (159), Expect = 3e-14
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
+ RV IVTGA +GLG + +LA+ GA+V+ DL A + AE+ +
Sbjct: 4 QLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDL---------KPPAGEEPAAELGAA 54
Query: 66 GGKAVPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
D + D + A + FG + ++N A
Sbjct: 55 VRFRNADVTNEADATAALAFAKQEFGHVHGLVNCA 89
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 65.0 bits (159), Expect = 3e-14
Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 9/100 (9%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
M +F+G AIV+G GLG + L G VV+ DL +++ +
Sbjct: 22 MVTIKQFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADL---------AAEKGKALAD 72
Query: 61 EIRSKGGKAVPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
E+ ++ + S ++ A + V+ +
Sbjct: 73 ELGNRAEFVSTNVTSEDSVLAAIEAANQLGRLRYAVVAHG 112
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 63.7 bits (156), Expect = 6e-14
Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 17/100 (17%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
+ F R +VTG G+G + A LA G V V G G D
Sbjct: 7 EGAKPPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSG-APKGLFGVEVD---- 61
Query: 61 EIRSKGGKAVPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
V D ++V D+ E+ G ++++++NA
Sbjct: 62 ---------VTDSDAV---DRAFTAVEEHQGPVEVLVSNA 89
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 64.4 bits (157), Expect = 6e-14
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 13/98 (13%)
Query: 9 GRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGK 68
++ ++TGA +G GR A LA G V RD G+++ + + R
Sbjct: 5 KKIILITGASSGFGRLTAEALAGAGHRVY----ASMRDIVGRNASNVEAIAGFARDNDVD 60
Query: 69 AVP------DYNSVVDGDKIVQTALENFGRIDIVINNA 100
SV D+ + + GRID++I+NA
Sbjct: 61 LRTLELDVQSQVSV---DRAIDQIIGEDGRIDVLIHNA 95
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 63.5 bits (155), Expect = 8e-14
Identities = 13/95 (13%), Positives = 21/95 (22%), Gaps = 14/95 (14%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
+ R +V G LG R V D+ + E
Sbjct: 4 SGEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVIVKMTDSFTE---- 59
Query: 66 GGKAVPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
D L ++D ++ A
Sbjct: 60 ----------QADQVTAEVGKLLGDQKVDAILCVA 84
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 62.9 bits (154), Expect = 1e-13
Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 21/92 (22%)
Query: 9 GRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGK 68
+ +V A G+GR+ A +L++ GA V + ++ +
Sbjct: 19 DKGVLVLAASRGIGRAVADVLSQEGAEVTIC---------ARNEELLKRSGHRY------ 63
Query: 69 AVPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
V D K + E +DI++ NA
Sbjct: 64 ------VVCDLRKDLDLLFEKVKEVDILVLNA 89
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 61.8 bits (151), Expect = 3e-13
Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 17/94 (18%)
Query: 7 FDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKG 66
R +VTG G+G + A A+ G V + +S + + +A
Sbjct: 19 HMSRSVLVTGGNRGIGLAIARAFADAGDKVAIT---------YRSGEPPEGFLAVKCD-- 67
Query: 67 GKAVPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
+ D V ++ + E G ++++I NA
Sbjct: 68 ---ITDTEQV---EQAYKEIEETHGPVEVLIANA 95
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
genomics, structural genomics consortium,
oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
c.2.1.2
Length = 279
Score = 61.9 bits (151), Expect = 4e-13
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 14/100 (14%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
R+ R+A+VTGA G+G + A L ++G VV G R + + AE +S
Sbjct: 29 RWRDRLALVTGASGGIGAAVARALVQQGLKVV----GCARTVG-----NIEELAAECKSA 79
Query: 66 G--GKAVPDYNSVVDGDKI---VQTALENFGRIDIVINNA 100
G G +P + + + I +DI INNA
Sbjct: 80 GYPGTLIPYRCDLSNEEDILSMFSAIRSQHSGVDICINNA 119
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 60.8 bits (148), Expect = 8e-13
Identities = 16/93 (17%), Positives = 26/93 (27%), Gaps = 14/93 (15%)
Query: 8 DGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGG 67
IV G LG + + G +V+ DL D + I G
Sbjct: 2 SSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQAD-----------SNILVDGN 50
Query: 68 KAVPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
K + + + ++D V A
Sbjct: 51 KNWTEQEQSILE---QTASSLQGSQVDGVFCVA 80
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
rossman fold, structural genomics, NPPSFA; 2.40A
{Thermus thermophilus}
Length = 234
Score = 60.2 bits (147), Expect = 1e-12
Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 14/94 (14%)
Query: 9 GRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGK 68
++TGA G+G + A LL +G V + RD + AE+
Sbjct: 5 KGAVLITGASRGIGEATARLLHAKGYRVGLMA----RDEK-----RLQALAAELEGALPL 55
Query: 69 A--VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
V + + V E FG + ++NNA
Sbjct: 56 PGDVREEGDW---ARAVAAMEEAFGELSALVNNA 86
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 61.1 bits (148), Expect = 1e-12
Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 21/110 (19%)
Query: 1 MPE---QVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADT 57
MPE R A+VTG G+G L+ G VV+ RD
Sbjct: 1 MPETCPNTVTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVL----TCRD-----VTKGHE 51
Query: 58 VVAEIRSKGGKAVP-------DYNSVVDGDKIVQTALENFGRIDIVINNA 100
V ++++ + V D + + + +FG++DI++NNA
Sbjct: 52 AVEKLKNSNHENVVFHQLDVTDPIATM--SSLADFIKTHFGKLDILVNNA 99
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the
center for structural genomics of I diseases, csgid,
niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 59.9 bits (146), Expect = 1e-12
Identities = 14/94 (14%), Positives = 29/94 (30%), Gaps = 17/94 (18%)
Query: 7 FDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKG 66
+VTG G+G++ LL + V+N S++ + A+
Sbjct: 2 NAMANYLVTGGSKGIGKAVVELLLQNKNHTVINI----DIQQSFSAENLKFIKAD----- 52
Query: 67 GKAVPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
+ + ++ D + NA
Sbjct: 53 ---LTKQQDI---TNVLDII--KNVSFDGIFLNA 78
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 59.9 bits (146), Expect = 2e-12
Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 13/95 (13%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
VA+VTG +GLG + L + GA VVV D+ G+ VVA++ +
Sbjct: 6 EIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGED------------VVADLGDR 53
Query: 66 GGKAVPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
A D + A E G + IV+N A
Sbjct: 54 ARFAAADVTDEAAVASALDLA-ETMGTLRIVVNCA 87
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 58.4 bits (142), Expect = 6e-12
Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 13/95 (13%)
Query: 9 GRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGK 68
+TGA +G G + A AE G S+V L G+R + + E+ S +
Sbjct: 21 SSTLFITGATSGFGEACARRFAEAGWSLV---LTGRR------EERLQALAGEL-SAKTR 70
Query: 69 AVP---DYNSVVDGDKIVQTALENFGRIDIVINNA 100
+P D V E F + +INNA
Sbjct: 71 VLPLTLDVRDRAAMSAAVDNLPEEFATLRGLINNA 105
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics,
unknown function, oxidoreductase, PSI- 2; 2.40A
{Corynebacterium glutamicum}
Length = 245
Score = 58.0 bits (141), Expect = 9e-12
Identities = 14/96 (14%), Positives = 34/96 (35%), Gaps = 15/96 (15%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
++A+VTGA G+G L+ + G++ + + +
Sbjct: 2 SLKKKIAVVTGATGGMGIEIVKDLSRDHIVYAL----------GRNPEHLAALAEIEGVE 51
Query: 66 GGKA-VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
++ + + V L+N +D +++ A
Sbjct: 52 PIESDIVKEVLE---EGGVD-KLKNLDHVDTLVHAA 83
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 57.8 bits (140), Expect = 1e-11
Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 19/100 (19%)
Query: 8 DGRVAIVTGAGAGLGRSYALLLAER-GASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKG 66
VA+VTG G+G + L VV+ RD V +++++G
Sbjct: 3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVL----TARD-----VTRGQAAVQQLQAEG 53
Query: 67 GKAVP------DYNSVVDGDKIVQTALENFGRIDIVINNA 100
D S+ + + +G +D+++NNA
Sbjct: 54 LSPRFHQLDIDDLQSI---RALRDFLRKEYGGLDVLVNNA 90
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 56.9 bits (138), Expect = 3e-11
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 21/97 (21%)
Query: 8 DGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGG 67
R ++TGA +GLG A LA RGA+V++ RD K AA T+ ++
Sbjct: 15 AQRTVVITGANSGLGAVTARELARRGATVIM----AVRDTR-KGEAAARTMAGQVE---- 65
Query: 68 KAVPDYNSVVDGD----KIVQTALENFGRIDIVINNA 100
V + D V+ + D++INNA
Sbjct: 66 --------VRELDLQDLSSVRRFADGVSGADVLINNA 94
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain
dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 56.2 bits (136), Expect = 4e-11
Identities = 13/91 (14%), Positives = 30/91 (32%), Gaps = 22/91 (24%)
Query: 10 RVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGKA 69
+ +++G G+G + +L G +V D+ V+A++ + G
Sbjct: 2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDI------------RDAEVIADLSTAEG-- 47
Query: 70 VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
I + +D ++ A
Sbjct: 48 --------RKQAIADVLAKCSKGMDGLVLCA 70
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 54.5 bits (132), Expect = 1e-10
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 12/90 (13%)
Query: 11 VAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGKAV 70
+ ++TGA +GLG A L G + L G R TV + + G
Sbjct: 3 LIVITGASSGLGAELAKLYDAEGKATY---LTG-RSES-----KLSTVTNCLSNNVGYRA 53
Query: 71 PDYNSVVDGDKIVQTALENFGRIDIVINNA 100
D + ++ Q + V+++A
Sbjct: 54 RD---LASHQEVEQLFEQLDSIPSTVVHSA 80
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Length = 266
Score = 54.9 bits (133), Expect = 1e-10
Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 26/102 (25%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQR-------DGDGKSSKAADTV 58
++ ++TGA +G+G + A +E G ++ L +R + D
Sbjct: 13 GSMKKLVVITGASSGIGEAIARRFSEEGHPLL---LLARRVERLKALNLPNTLCAQVD-- 67
Query: 59 VAEIRSKGGKAVPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
V D + D + A + +G D ++NNA
Sbjct: 68 -----------VTDKYTF---DTAITRAEKIYGPADAIVNNA 95
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold,
short-chain dehydrogenase/reducta ALLO-threonine
dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Length = 248
Score = 54.5 bits (132), Expect = 1e-10
Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 15/93 (16%)
Query: 11 VAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGKAV 70
+ +VTGA AG G ++G V+ G+R + + E+ G
Sbjct: 2 IVLVTGATAGFGECITRRFIQQGHKVI---ATGRR------QERLQELKDEL---GDNLY 49
Query: 71 PDYNSVVDGDKI---VQTALENFGRIDIVINNA 100
V + I + + + IDI++NNA
Sbjct: 50 IAQLDVRNRAAIEEMLASLPAEWCNIDILVNNA 82
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 53.9 bits (130), Expect = 3e-10
Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 21/107 (19%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAE---RGASVVVNDLGGQRDGDGKSSKAADTVVAEI 62
V ++TGA G GR+ A LA G+ ++V+ +S + E+
Sbjct: 3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVS---------ARSESMLRQLKEEL 53
Query: 63 RSK--GGKAVP---DYNSVVDGDKIVQTALENFG----RIDIVINNA 100
++ K V D + +++ E + ++INNA
Sbjct: 54 GAQQPDLKVVLAAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNA 100
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty
acid, structural genomi structural genomics/proteomics
initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus}
SCOP: c.2.1.2
Length = 242
Score = 53.4 bits (129), Expect = 4e-10
Identities = 29/91 (31%), Positives = 38/91 (41%), Gaps = 19/91 (20%)
Query: 10 RVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGKA 69
R A+VTG +GLGR+ AL L RG VVV DL +R+G+ D
Sbjct: 3 RSALVTGGASGLGRAAALALKARGYRVVVLDL--RREGEDLIYVEGD------------- 47
Query: 70 VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
V V V A E + V++ A
Sbjct: 48 VTREEDVRRA---VARAQE-EAPLFAVVSAA 74
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann
fold; HET: NAI; 1.80A {Pseudomonas SP}
Length = 255
Score = 53.4 bits (129), Expect = 5e-10
Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 20/98 (20%)
Query: 11 VAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGKA- 69
V +TG+ +G+G + LLA G +V+ D G + A++ + GG+
Sbjct: 3 VIAITGSASGIGAALKELLARAGHTVIGIDRG------------QADIEADLSTPGGRET 50
Query: 70 -----VPDYNSVVDGD--KIVQTALENFGRIDIVINNA 100
+ V+DG + + +N
Sbjct: 51 AVAAVLDRCGGVLDGLVCCAGVGVTAANSGLVVAVNYF 88
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.00A {Streptomyces avermitilis}
Length = 281
Score = 52.7 bits (127), Expect = 1e-09
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 11/92 (11%)
Query: 10 RVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGKA 69
+V +VTGA +G GR+ A G +V+ G R + D + +A
Sbjct: 6 KVWLVTGASSGFGRAIAEAAVAAGDTVI----GTARR----TEALDD--LVAAYPDRAEA 55
Query: 70 VP-DYNSVVDGDKIVQTALENFGRIDIVINNA 100
+ D D + L +GR+D+++NNA
Sbjct: 56 ISLDVTDGERIDVVAADVLARYGRVDVLVNNA 87
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain
oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A
{Saccharomyces cerevisiae}
Length = 287
Score = 52.7 bits (127), Expect = 1e-09
Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 23/106 (21%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERG---ASVVVNDLGGQRDGDGKSSKAADTVVAEI 62
R + ++TGA AG+G++ AL E ++ L +R + + + I
Sbjct: 30 RLAKKTVLITGASAGIGKATALEYLEASNGDMKLI---LAARR------LEKLEELKKTI 80
Query: 63 RSKGGKA--------VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
+ A + + ++ + F IDI++NNA
Sbjct: 81 DQEFPNAKVHVAQLDITQAEKI---KPFIENLPQEFKDIDILVNNA 123
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 46.4 bits (110), Expect = 2e-07
Identities = 17/94 (18%), Positives = 26/94 (27%), Gaps = 14/94 (14%)
Query: 7 FDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKG 66
G+ A+V +G A LLA GA VV+ + A + +
Sbjct: 117 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDK---------AQAAADSVNKRF 167
Query: 67 GKAVPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
V + D + E V
Sbjct: 168 KVNVTAAETADDASRA-----EAVKGAHFVFTAG 196
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B),
NAD(P)-binding rossmann-fold structural genomics,
NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Length = 207
Score = 44.9 bits (107), Expect = 4e-07
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 19/90 (21%)
Query: 12 AIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGKAVP 71
++TGA GLG A A +G ++++ R A + E+ G +A+P
Sbjct: 3 VLITGATGGLGG--AFARALKGHDLLLSG----RRAG-----ALAELAREV---GARALP 48
Query: 72 -DYNSVVDGDKIVQTALENFGRIDIVINNA 100
D + D + + LE G +D++++
Sbjct: 49 AD---LADELE-AKALLEEAGPLDLLVHAV 74
>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones,
alternative binding mode, oxidoreductase; HET: TES;
1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A*
1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A*
3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A*
3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
Length = 327
Score = 42.0 bits (99), Expect = 6e-06
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 10/95 (10%)
Query: 10 RVAIVTGAGAGLGRSYALLLAE---RGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKG 66
V ++TG +G+G A+ LA + V RD +
Sbjct: 3 TVVLITGCSSGIGLHLAVRLASDPSQSFKVY----ATLRDLKTQGRLWEAARALACPPGS 58
Query: 67 GKAVP-DYNSVVDGDKIVQTALENFGRIDIVINNA 100
+ + D + E GR+D+++ NA
Sbjct: 59 LETLQLDVRDSKSVAAARERVTE--GRVDVLVCNA 91
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 39.9 bits (94), Expect = 2e-05
Identities = 10/93 (10%), Positives = 28/93 (30%), Gaps = 28/93 (30%)
Query: 8 DGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGG 67
+ ++ GA LG + L ++ + + + V +I +
Sbjct: 2 NAMKILLIGASGTLGSAVKERLEKKAEVITA-------------GRHSGDVTVDITNIDS 48
Query: 68 KAVPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
++ E G++D +++
Sbjct: 49 ---------------IKKMYEQVGKVDAIVSAT 66
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 39.9 bits (93), Expect = 4e-05
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 5 VRFDGRVAIVTGAGAG-LGRSYALLLAERGASVVV 38
V F + ++TGAG G +G L + GA VVV
Sbjct: 472 VTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVV 506
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 4e-05
Identities = 25/105 (23%), Positives = 35/105 (33%), Gaps = 23/105 (21%)
Query: 5 VRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRS 64
V + G V LGRS ++A V S +A VV +
Sbjct: 1786 VFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAA----------SFSQEALQYVVERVGK 1835
Query: 65 KGGKAVP--DYNS-----VVDGDKI-VQTA---LENFG--RIDIV 96
+ G V +YN V GD + T L +IDI+
Sbjct: 1836 RTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDII 1880
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 38.1 bits (89), Expect = 1e-04
Identities = 19/94 (20%), Positives = 32/94 (34%), Gaps = 11/94 (11%)
Query: 10 RVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGKA 69
+VTGA G+G L + + + RD + + + I+
Sbjct: 4 GSVVVTGANRGIGLGLVQQLVKDKNIRHI--IATARDVEKATE------LKSIKDSRVHV 55
Query: 70 VP-DYNSVVDGDKIVQTALENFGR--IDIVINNA 100
+P D V E G + ++INNA
Sbjct: 56 LPLTVTCDKSLDTFVSKVGEIVGSDGLSLLINNA 89
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 33.9 bits (78), Expect = 0.003
Identities = 10/97 (10%), Positives = 30/97 (30%), Gaps = 14/97 (14%)
Query: 10 RVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGKA 69
++TG GLG L R+ + + ++
Sbjct: 22 NSILITGCNRGLGLGLVKALLNLPQPPQHL-FTTCRNREQAKE------LEDLAKNHSNI 74
Query: 70 ------VPDYNSVVDGDKIVQTALENFGRIDIVINNA 100
+ ++++ ++ ++ ++++ NNA
Sbjct: 75 HILEIDLRNFDAYDKLVADIEGVTKD-QGLNVLFNNA 110
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.010
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 8/49 (16%)
Query: 26 ALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGKAVPDYN 74
ALL +V+++ + G GK+ A D S + D+
Sbjct: 143 ALLELRPAKNVLIDGVLGS----GKTWVALDVC----LSYKVQCKMDFK 183
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 31.5 bits (72), Expect = 0.025
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 8/40 (20%)
Query: 10 RVAIVTGAG-AGLGRSYALLLAERGASVVV----NDLGGQ 44
RV +V GAG +GL A L RG VV+ DLGG+
Sbjct: 393 RVLVV-GAGPSGL--EAARALGVRGYDVVLAEAGRDLGGR 429
Score = 31.1 bits (71), Expect = 0.038
Identities = 12/58 (20%), Positives = 22/58 (37%)
Query: 9 GRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKG 66
+V + LG A LLA++G V + G Q ++ + + + G
Sbjct: 524 KKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENG 581
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 31.6 bits (72), Expect = 0.030
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 8/40 (20%)
Query: 10 RVAIVTGAG-AGLGRSYALLLAERGASVVV----NDLGGQ 44
V IV GAG +G A +L E G +V + +GG
Sbjct: 391 SVLIV-GAGPSGS--EAARVLMESGYTVHLTDTAEKIGGH 427
Score = 28.9 bits (65), Expect = 0.26
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 9 GRVAIVTGAGAGLGRSYALLLAERGASVVV 38
RV I+ + S A LA G V +
Sbjct: 529 KRVVILNADTYFMAPSLAEKLATAGHEVTI 558
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for
structural genomics; HET: MSE; 1.50A {Streptococcus
agalactiae}
Length = 451
Score = 31.4 bits (72), Expect = 0.034
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 10 RVAIVTGAGAGL-GRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTV 58
+V ++ G G + A LLA+ GA V VND + S + +
Sbjct: 11 KVLVL---GLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGI 57
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 31.1 bits (71), Expect = 0.043
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 8/40 (20%)
Query: 10 RVAIVTGAG-AGLGRSYALLLAERGASVVV----NDLGGQ 44
+A+V GAG AGL ++A+ A RG V + +++GGQ
Sbjct: 375 NLAVV-GAGPAGL--AFAINAAARGHQVTLFDAHSEIGGQ 411
Score = 25.0 bits (55), Expect = 5.8
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 9 GRVAIVTGAGAGLGRSYALLLAERGASVVVN 39
+VAI+ G G A+ L++ G S N
Sbjct: 495 NKVAIIGCGGIGF--DTAMYLSQPGESTSQN 523
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing
protein, oxidoreductase; HET: FAD; 1.20A
{Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB:
1c0i_A* 1c0l_A* 1c0k_A*
Length = 363
Score = 30.8 bits (69), Expect = 0.047
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 10 RVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAA 55
RV ++ G+G +G S AL+LA +G SV + L D S A
Sbjct: 8 RVVVL-GSGV-IGLSSALILARKGYSVHI--LARDLPEDVSSQTFA 49
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding,
cell cycle, cell division, cell shape, cell WAL
biogenesis/degradation; HET: KCX VSV; 1.46A
{Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A*
2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A*
2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A*
2uag_A*
Length = 439
Score = 30.6 bits (70), Expect = 0.058
Identities = 13/60 (21%), Positives = 18/60 (30%), Gaps = 11/60 (18%)
Query: 10 RVAIVTGAGAGL-GRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGK 68
V I+ G GL G S RG + V D + D + + G
Sbjct: 7 NVVII---GLGLTGLSCVDFFLARGVTPRVMD-------TRMTPPGLDKLPEAVERHTGS 56
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 30.3 bits (68), Expect = 0.085
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 5 VRFDGRVAIVTGAGAG-LGRSYALLLAERGASVVV 38
+ F G+ A++TGAGAG +G L GA V+V
Sbjct: 648 LTFQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIV 682
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER;
HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A*
2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A*
1kif_A* 1an9_A* 1evi_A*
Length = 351
Score = 30.0 bits (67), Expect = 0.088
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 8/51 (15%)
Query: 10 RVAIVTGAG-AGLGRSYALLLAERGASVVVND----LGGQRDGDGKSSKAA 55
RV ++ GAG GL S AL + ER SV+ + + AA
Sbjct: 2 RVVVI-GAGVIGL--STALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAA 49
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP;
2.10A {Pyrococcus furiosus}
Length = 421
Score = 30.0 bits (68), Expect = 0.093
Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 12/46 (26%)
Query: 12 AIVTGAG-AGLGRSYALLLAERGASVVV----NDLGG-----QRDG 47
A+V GAG GL LA G ++V +GG G
Sbjct: 3 AVVVGAGLGGL--LAGAFLARNGHEIIVLEKSAMIGGRFTNLPYKG 46
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 29.9 bits (67), Expect = 0.098
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 5 VRFDGRVAIVTGAGAG-LGRSYALLLAERGASVVV 38
V F + ++TGAG G +G L + GA VVV
Sbjct: 671 VTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVV 705
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate
dehydrogenase (EC...; 1574749, chorismate mutase type
II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae}
SCOP: a.100.1.12 c.2.1.6
Length = 298
Score = 29.6 bits (67), Expect = 0.12
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 9 GRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVV 59
++ IV G G LG +A L G + + D + AD V+
Sbjct: 22 HKIVIVGGYGK-LGGLFARYLRASGYPISILDREDWAVAE-SILANADVVI 70
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant,
homotetramer, GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 29.4 bits (65), Expect = 0.14
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 12 AIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGD 48
++ G+G G +YA L G V + D+G G
Sbjct: 49 VVIVGSGPI-GCTYARELVGAGYKVAMFDIGEIDSGL 84
>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces
nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*
Length = 496
Score = 29.3 bits (66), Expect = 0.15
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 2 PEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAE 61
++ G V +VTG G+G A LAE+GA+ +V L +R G + A + AE
Sbjct: 233 GKRPPVHGSV-LVTGGTGGIGGRVARRLAEQGAAHLV--LTSRR---GADAPGAAELRAE 286
Query: 62 IRSKG 66
+ G
Sbjct: 287 LEQLG 291
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Length = 425
Score = 29.3 bits (66), Expect = 0.17
Identities = 14/46 (30%), Positives = 17/46 (36%), Gaps = 12/46 (26%)
Query: 12 AIVTGAG-AGLGRSYALLLAERGASVVV----NDLGG-----QRDG 47
+V GAG GL A L++ G V V GG G
Sbjct: 3 TVVIGAGLGGL--LSAARLSKAGHEVEVFERLPITGGRFTNLSYKG 46
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A
3a97_A 3adp_A* 3f3s_A*
Length = 319
Score = 28.8 bits (65), Expect = 0.26
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 9 GRVAIVTGAGAGL-GRSYALLLAERGASVVVND 40
G V IV G+GL GRS+A+L A G V + D
Sbjct: 7 GDVLIV---GSGLVGRSWAMLFASGGFRVKLYD 36
>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty
acid biosynthesis II, short-chain dehydrogenase
reductase superfamily; HET: NAI; 1.80A {Yersinia pestis}
PDB: 3zu4_A* 3zu5_A* 3zu2_A*
Length = 405
Score = 28.5 bits (63), Expect = 0.31
Identities = 19/102 (18%), Positives = 32/102 (31%), Gaps = 13/102 (12%)
Query: 9 GRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAA-------DTVVAE 61
+ +V GA G G + + A + LG + G+ K
Sbjct: 47 PKRVLVIGASTGYGLAARITAAFGCG---ADTLGVFFERPGEEGKPGTSGWYNSAAFHKF 103
Query: 62 IRSKGGKAVP---DYNSVVDGDKIVQTALENFGRIDIVINNA 100
KG A D S + ++ G++D VI +
Sbjct: 104 AAQKGLYAKSINGDAFSDEIKQLTIDAIKQDLGQVDQVIYSL 145
>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH,
oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora
spinosa}
Length = 795
Score = 28.5 bits (64), Expect = 0.31
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYAL-LLAERGASVVVNDLGGQRDGDGKSSKAADTVV 59
MP G V + G G LG A L+ ERG +V L +R G ++ A +V
Sbjct: 523 MPPVWDAAGTVLVTGGTG-ALGAEVARHLVIERGVRNLV--LVSRR---GPAASGAAELV 576
Query: 60 AEIRSKG 66
A++ + G
Sbjct: 577 AQLTAYG 583
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 28.2 bits (63), Expect = 0.38
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 9/48 (18%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVV---NDLGGQR 45
M E +D V +V G G +G + A +AERG V+V + +
Sbjct: 1 MTE--SYD--VVVV-GGGP-VGLATAWQVAERGHRVLVLERHTFFNEN 42
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A
{Homo sapiens} SCOP: a.102.4.4
Length = 367
Score = 28.1 bits (61), Expect = 0.41
Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 6/43 (13%)
Query: 24 SYALL--LAERG----ASVVVNDLGGQRDGDGKSSKAADTVVA 60
+YALL L G A L Q G DTV+A
Sbjct: 310 AYALLHLLLHEGKAEMADQASAWLTRQGSFQGGFRSTQDTVIA 352
>2kw5_A SLR1183 protein; structural genomics, northeast structural
genomics consortium (NESG), PSI-2, protein structure
initiative, unknown function; NMR {Synechocystis} PDB:
3mer_A
Length = 202
Score = 27.9 bits (62), Expect = 0.42
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 4/33 (12%)
Query: 9 GRVAIVTGAGAGLGRSYALLLAERGASVVVNDL 41
G++ + G GR A LA G V D
Sbjct: 31 GKILCL---AEGEGR-NACFLASLGYEVTAVDQ 59
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 27.7 bits (62), Expect = 0.54
Identities = 8/43 (18%), Positives = 20/43 (46%), Gaps = 7/43 (16%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVV---NDLGGQR 45
++D + I+ G+G+ +G + G +V++ + Q
Sbjct: 2 KYD--LIII-GSGS-VGAAAGYYATRAGLNVLMTDAHMPPHQH 40
>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase,
oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora
erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*
Length = 486
Score = 27.7 bits (62), Expect = 0.68
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 2 PEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAE 61
++ + G V +VTG G+G A LA RGA ++ L + G + A +VAE
Sbjct: 220 DDEWKPTGTV-LVTGGTGGVGGQIARWLARRGAPHLL--LVSRS---GPDADGAGELVAE 273
Query: 62 IRSKG 66
+ + G
Sbjct: 274 LEALG 278
>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2;
short-chain dehydrogenase/reductase, rossman fold; 1.95A
{Streptomyces fradiae}
Length = 511
Score = 27.5 bits (61), Expect = 0.70
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
+ G V ++TG +GR A LA GA +V L +R G + A +
Sbjct: 252 GAASWQPSGTV-LITGGMGAIGRRLARRLAAEGAERLV--LTSRR---GPEAPGAAELAE 305
Query: 61 EIRSKG 66
E+R G
Sbjct: 306 ELRGHG 311
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic
hydroxylase, nicotine degradation, mono-oxygenase; HET:
FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2
d.16.1.2
Length = 397
Score = 27.3 bits (61), Expect = 0.71
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 10 RVAIVTGAG-AGLGRSYALLLAERGASVVV 38
R+A+V G +GL + AL+L + G V V
Sbjct: 7 RIAVV-GGSISGL--TAALMLRDAGVDVDV 33
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND
FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2
d.16.1.1 PDB: 3cox_A*
Length = 507
Score = 27.4 bits (60), Expect = 0.81
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVV 38
+ + R A+V G+G G G AL L + G +
Sbjct: 6 LADGDRVP---ALVIGSGYG-GAVAALRLTQAGIPTQI 39
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 27.5 bits (61), Expect = 0.87
Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 6/59 (10%)
Query: 8 DGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKG 66
++TG G G A L RGA +V L + G + V E R +G
Sbjct: 1884 HKSY-VITGGLGGFGLQLAQWLRLRGAQKLV--LTSRS---GIRTGYQARQVREWRRQG 1936
>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase,
epimerization, oxidoreductase; 1.88A {Streptomyces
venezuelae}
Length = 525
Score = 27.1 bits (60), Expect = 0.96
Identities = 17/71 (23%), Positives = 24/71 (33%), Gaps = 7/71 (9%)
Query: 2 PEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVV------NDLGGQRDGDGKSSKAA 55
+ DG V +VTGA A LA GA ++ G +
Sbjct: 245 SPWWQADGTV-LVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGL 303
Query: 56 DTVVAEIRSKG 66
+VAE+ G
Sbjct: 304 AGLVAELADLG 314
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES
protein structure initiative, northeast structural
genomics consortium; HET: FAD; 2.60A {Cytophaga
hutchinsonii}
Length = 421
Score = 27.1 bits (60), Expect = 0.97
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 7/39 (17%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSY-ALLLAERGASVVV 38
M + + D V ++ GAG + A L+ + G V +
Sbjct: 1 MQRE-KVD--VLVI---GAGPAGTVAASLVNKSGFKVKI 33
>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima
dehydrogenase; shikimate, NADPH, dehydroshikimate,
bifunctional enzyme; HET: DHK TLA NAP; 1.78A
{Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*
Length = 523
Score = 27.0 bits (60), Expect = 0.99
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 9 GRVAIVTGAGAGLGRSYALLLAERGASVVV 38
+ +V GAG G G++ A E+GA VV+
Sbjct: 364 SKTVVVIGAG-GAGKALAYGAKEKGAKVVI 392
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin,
bacteroides F oxidoreductase; HET: FAD; 2.09A
{Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A*
2y6r_A* 3p9u_A*
Length = 398
Score = 27.0 bits (60), Expect = 1.1
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 10 RVAIVTGAG-AGLGRSYALLLAERGASVVV 38
VAI+ G G GL + A LL + G V V
Sbjct: 28 NVAII-GGGPVGL--TMAKLLQQNGIDVSV 54
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 26.9 bits (59), Expect = 1.2
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 12 AIVTGAGAGLGRSYALLLAERGASVVV 38
A+V G G G AL L E G ++
Sbjct: 8 AVVIGTGYG-AAVSALRLGEAGVQTLM 33
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L)
stereospecific opine dehydrogenase, oxidoreductase;
1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Length = 359
Score = 26.9 bits (59), Expect = 1.2
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 10 RVAIVTGAGAGLGRSYALLLAERGASVVV 38
A++ G G G G ++A LA +G SV+
Sbjct: 6 TYAVL-GLGNG-GHAFAAYLALKGQSVLA 32
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 26.7 bits (59), Expect = 1.3
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 7/39 (17%)
Query: 1 MPEQVRFDGRVAIVTGAG-AGLGRSYALLLAERGASVVV 38
M E ++D ++ G G AG S A L+ RG +++
Sbjct: 2 MKEL-KYD---VLIIGGGFAGS--SAAYQLSRRGLKILL 34
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 26.6 bits (59), Expect = 1.4
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 14 VTGAGAGLGRSYALLLAERGASVVVNDL 41
VTGA LGR LA + + DL
Sbjct: 8 VTGAAGQLGRVMRERLAPMAEILRLADL 35
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 26.4 bits (59), Expect = 1.4
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 10 RVAIVTGAGAGLGRSYALLLAERGASVVV---NDLGGQ 44
++ G G +G + A LA+ + + +GG+
Sbjct: 19 EAVVI-GGG-IIGSAIAYYLAKENKNTALFESGTMGGR 54
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase;
HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A*
3rp6_A*
Length = 407
Score = 26.5 bits (59), Expect = 1.4
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 10 RVAIVTGAG-AGLGRSYALLLAERGASVVV 38
+ ++ GAG GL S A+ L + G V
Sbjct: 25 KAIVI-GAGIGGL--SAAVALKQSGIDCDV 51
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold,
cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A
{Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Length = 677
Score = 26.5 bits (58), Expect = 1.5
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 8 DGR--VAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRD 46
DGR V++ G G G + + +V +GG+
Sbjct: 530 DGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGGKAR 570
>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL
oxidoreductase, alpha/beta domain, rossmann fold; HET:
SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A*
3phj_A*
Length = 269
Score = 26.4 bits (59), Expect = 1.6
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVV 38
+ + + A++ GAG G ++ A L ++G V V
Sbjct: 115 QKNYQNALILGAG-GSAKALACELKKQGLQVSV 146
>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A
{Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*
Length = 397
Score = 26.5 bits (59), Expect = 1.7
Identities = 20/97 (20%), Positives = 32/97 (32%), Gaps = 18/97 (18%)
Query: 14 VTGAGAGLGRSY------ALLLAERGASVVVND-L--GGQRDGDGKSSKAADTVVAEIRS 64
V G GAG Y LL + SVV+ D L + ++ + + +
Sbjct: 7 VCG-GAG----YIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDG 61
Query: 65 KGGKAVPDYNSVVDGD----KIVQTALENFGRIDIVI 97
Y ++ GD + G ID V+
Sbjct: 62 PKPPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVV 98
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 26.5 bits (58), Expect = 1.7
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 6/34 (17%)
Query: 6 RFDGRVAIVTGAG-AGLGRSYALLLAERGASVVV 38
R VAI+ G G AG L L + G V +
Sbjct: 23 RSK--VAII-GGGPAGS--VAGLTLHKLGHDVTI 51
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 26.4 bits (58), Expect = 1.9
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 11 VAIVTGAGAGLGRSY-ALLLAERGASVVV 38
+ ++ G G G S A +A RG V++
Sbjct: 10 LIVI---GGGPGGSTLASFVAMRGHRVLL 35
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 26.2 bits (58), Expect = 1.9
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 11 VAIVTGAGAGLGRSYALLLAERGASVVV 38
V +V GAG S A+ + GA V++
Sbjct: 129 VVVVGSGGAGF--SAAISATDSGAKVIL 154
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 26.2 bits (57), Expect = 2.2
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 10 RVAIVTGAGAGLGRSYALLLAERGASV 36
VA++ G +G S A +L
Sbjct: 2 SVALIVGVTGIIGNSLAEILPLADTPG 28
>3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1,
structural genomics, structu genomics consortium, SGC,
metallopeptidase M20 family; 2.26A {Homo sapiens}
Length = 485
Score = 26.1 bits (58), Expect = 2.2
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 28 LLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGK 68
L GA V D+G Q+ DG+S ++AE+ S K
Sbjct: 62 TLQRLGARVASVDMGPQQLPDGQSLPIPPVILAELGSDPTK 102
>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group
transfer, pyrimidine biosynthesis, transferase; 2.40A
{Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A*
2bmu_A* 2bri_A*
Length = 244
Score = 25.8 bits (57), Expect = 2.2
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 4 QVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGG 43
+V D VA+V G G L R Y + + +S D G
Sbjct: 50 KVSEDHEVAVVVGGGK-LARKYIEVAEKFNSSETFKDFIG 88
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose
reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2
c.2.1.1
Length = 352
Score = 26.0 bits (58), Expect = 2.3
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 9 GRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQR 45
G +V GAG +G L GA VV +R
Sbjct: 169 GTTVLVIGAGP-IGLVSVLAAKAYGAFVVCTARSPRR 204
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics,
protein structure initiative, midwest center for
structural genomics, kinase; 2.30A {Pseudomonas
syringae PV}
Length = 228
Score = 25.7 bits (57), Expect = 2.4
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 9 GRVAIVTGAGAGLGRSYALL-----LAERGASVVV 38
GR+ + GA G+G++YA+L +G V+
Sbjct: 5 GRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMA 39
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase,
inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A
{Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A*
1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A*
3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A*
3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Length = 389
Score = 25.7 bits (57), Expect = 2.5
Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 12 AIVTGAGAGLGRSYALLLAERGASVVV 38
IV GAG+ +G + LA++G ++
Sbjct: 6 VIVVGAGS-MGMAAGYQLAKQGVKTLL 31
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein
complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A
{Pyrococcus horikoshii}
Length = 493
Score = 26.1 bits (57), Expect = 2.6
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 17/67 (25%)
Query: 11 VAIVTGAG-AGLGRSYALLLAERGASVVV----NDLGGQ-------RDGDGKSS-KAADT 57
VAI+ G G AG+G A L ++ +V + LGG ++G K S K +
Sbjct: 111 VAII-GGGPAGIG---AALELQQYLTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEE 166
Query: 58 VVAEIRS 64
+V ++
Sbjct: 167 LVGKLNE 173
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 25.8 bits (56), Expect = 2.6
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 2 PEQVRFDG-RVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADT 57
E + F G ++A++ G G +GR+ A LA+ G V + G RD ++A
Sbjct: 12 HENLYFQGMKIAVL-GTGT-VGRTMAGALADLGHEVTI----GTRDPKATLARAEPD 62
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 25.7 bits (56), Expect = 2.8
Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 18 GAGLGRSYALLLAERGASVVVNDL 41
G G +++L E G SV D
Sbjct: 65 ACGTGV-DSIMLVEEGFSVTSVDA 87
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 25.8 bits (57), Expect = 2.8
Identities = 9/27 (33%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 13 IVTGAG-AGLGRSYALLLAERGASVVV 38
++ G+G AGL + A+ + GA V++
Sbjct: 130 VIIGSGGAGL--AAAVSARDAGAKVIL 154
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 25.8 bits (57), Expect = 3.0
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 13 IVTGAG-AGLGRSYALLLAERGASVVV 38
+V GAG AG + +L + GA+V++
Sbjct: 125 LVVGAGSAGF--NASLAAKKAGANVIL 149
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 25.7 bits (56), Expect = 3.0
Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 17 AGAGLGRSYALLLAERGASVVVNDL 41
G G GR +L L+ G V D
Sbjct: 127 LGCGQGR-NSLYLSLLGYDVTSWDH 150
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase;
HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB:
2r0g_A* 2r0p_A* 3ept_A*
Length = 549
Score = 25.8 bits (57), Expect = 3.1
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
Query: 1 MPEQVRFDGRVAIVTGAG-AGLGRSYALLLAERGASVVV 38
M + D V I+ G G G+ + AL LA R +V
Sbjct: 21 MNAPIETD--VLIL-GGGPVGM--ALALDLAHRQVGHLV 54
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide
acetyltransferase; 2-oxoacid dehydrogenases
acyltransferase; 2.50A {Listeria monocytogenes}
Length = 256
Score = 25.7 bits (57), Expect = 3.1
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 68 KAVPDYNSVVDGDKIVQTALENFG 91
K P NS GDKI++ A N
Sbjct: 89 KEFPQLNSTWAGDKIIEHANINIS 112
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A
{Sulfolobus tokodaii}
Length = 472
Score = 25.6 bits (57), Expect = 3.3
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query: 13 IVTGAG-AGLGRSYALLLAERGASVVV 38
+ G+G AGL S + L G V +
Sbjct: 3 YIIGSGIAGL--SAGVALRRAGKKVTL 27
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase,
membrane pyrophosphotase, ION pump; 2.60A {Thermotoga
maritima} PDB: 4av6_A
Length = 735
Score = 25.5 bits (56), Expect = 3.3
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 8/35 (22%)
Query: 52 SKAADTVVAEIRS-----KG---GKAVPDYNSVVD 78
+KAA +V EIR G GKA PDYN ++
Sbjct: 576 TKAAMKMVDEIRRQAREIPGLLEGKAKPDYNRCIE 610
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET:
FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2
d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A*
1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A*
1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A*
1phh_A* ...
Length = 394
Score = 25.4 bits (56), Expect = 3.4
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 11 VAIVTGAG-AGLGRSYALLLAERGASVVV 38
VAI+ GAG +GL LL + G V+
Sbjct: 5 VAII-GAGPSGL--LLGQLLHKAGIDNVI 30
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent
methyltransferase; NP_104914.1; HET: MSE; 1.60A
{Mesorhizobium loti}
Length = 243
Score = 25.5 bits (56), Expect = 3.5
Identities = 11/42 (26%), Positives = 14/42 (33%), Gaps = 6/42 (14%)
Query: 2 PEQVRFDGRVAIVTG-----AGAGLGRSYALLLAERGASVVV 38
E + V G G G G + E GAS V+
Sbjct: 30 AEWPALRAMLPEVGGLRIVDLGCGFGW-FCRWAHEHGASYVL 70
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 25.4 bits (56), Expect = 3.6
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 13 IVTGAGAGLGRSYALLLAERGASVVV 38
+V G G G + ++ A GA V+V
Sbjct: 45 VVAGYGIA-GVAASIEAARAGADVLV 69
>4a01_A Proton pyrophosphatase; hydrolase, membrane protein, proton
pumping; HET: DMU; 2.35A {Vigna radiata}
Length = 766
Score = 25.5 bits (56), Expect = 3.6
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 8/35 (22%)
Query: 52 SKAADTVVAEIRS-----KG---GKAVPDYNSVVD 78
AA +V E+R G G A PDY + V
Sbjct: 598 GSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVK 632
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 25.2 bits (55), Expect = 3.7
Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 13/89 (14%)
Query: 10 RVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGKA 69
R+ ++ GA +GR A + G + R+ S+ ++ ++ G
Sbjct: 6 RILLI-GATGYIGRHVAKASLDLGHPTFL----LVRESTASSNSEKAQLLESFKASGANI 60
Query: 70 VP-DYNSVVDGDKIVQTALENFGRIDIVI 97
V + + A++N +D+VI
Sbjct: 61 VHGSIDDHAS----LVEAVKN---VDVVI 82
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure
initiative dependent methyltransferase; HET: SAI; 1.94A
{Leishmania major} SCOP: c.66.1.42
Length = 254
Score = 25.4 bits (55), Expect = 3.7
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 17 AGAGLGRSYALLLAERGASVVVNDL 41
GAG+GR LL + A+ + +
Sbjct: 100 CGAGIGRITKNLLTKLYATTDLLEP 124
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related
protein; ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 25.2 bits (55), Expect = 3.8
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 18 GAGLGRSYALLLAERGASVVVNDL 41
G G G+ ++L L ERG VV+ D
Sbjct: 62 GGGTGK-WSLFLQERGFEVVLVDP 84
>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding,
fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}
Length = 422
Score = 25.5 bits (55), Expect = 3.9
Identities = 14/100 (14%), Positives = 30/100 (30%), Gaps = 8/100 (8%)
Query: 9 GRVAIVTGAGAGLGRSYALLLAER-GASVVVNDLGGQRDGDGKSS---KAADTVVAEIRS 64
+ +V GA +G G + + A GA + + + ++
Sbjct: 61 PKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKA 120
Query: 65 KGGKAVPDYNSVVDGDKIVQTAL----ENFGRIDIVINNA 100
G + Q E G++D+V+ +
Sbjct: 121 AGLYSKSINGDAFSDAARAQVIELIKTEMGGQVDLVVYSL 160
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1,
ATP-grAsp domain, carbamoylphosphate synthase subunit
(split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Length = 331
Score = 25.2 bits (55), Expect = 4.4
Identities = 11/85 (12%), Positives = 23/85 (27%), Gaps = 15/85 (17%)
Query: 13 IVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGKAVPD 72
++T AG + + V D + AD VP
Sbjct: 8 LITSAGRRAKLVEYFVKEFKTGRVSTAD----CSPLASALYMADQHY---------IVPK 54
Query: 73 YNSVVDGDKIVQTALENFGRIDIVI 97
+ V D ++ + + ++
Sbjct: 55 IDEVEYIDHLLTLCQDE--GVTALL 77
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Length = 499
Score = 25.3 bits (56), Expect = 4.4
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 1 MPEQVRFDGRVAIVTGAG-AGLGRSYALLLAERGASVVV 38
R D V +V GAG AGL A L G V+V
Sbjct: 5 HHHHHRSDASVIVV-GAGPAGL--MLAGELRLGGVDVMV 40
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central
beta-sheet surrounded by five alpha-helices; 8.80A {Homo
sapiens}
Length = 239
Score = 24.9 bits (55), Expect = 4.7
Identities = 7/28 (25%), Positives = 10/28 (35%), Gaps = 5/28 (17%)
Query: 68 KAVPDYNSVVDGDKIVQTALENFGRIDI 95
VP+ NS I Q +D+
Sbjct: 81 LKVPEANSSWMDTVIRQ-----NHVVDV 103
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 25.0 bits (55), Expect = 5.1
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 6/34 (17%)
Query: 6 RFDGRVAIVTGAG-AGLGRSYALLLAERGASVVV 38
+D V +V G G G + A A+ G ++
Sbjct: 4 TYD--VLVV-GGGPGGS--TAARYAAKYGLKTLM 32
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid
dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter
salexigens}
Length = 267
Score = 25.0 bits (55), Expect = 5.4
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 14 VTGAGAGLGRSYALLLAERGASVVVND 40
VTGA G+G + L V ++D
Sbjct: 7 VTGAAGGVGSAIRPHLGTLAHEVRLSD 33
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella
burnetii}
Length = 181
Score = 24.6 bits (53), Expect = 5.5
Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 5 VRFDGRVAIVTGAGAGLGRS-YALLLAERGASVVVNDLGGQRDGDGK 50
+ D ++TG A +G+S +L L +RG +V +D+ + + +
Sbjct: 12 LVIDKMGVLITG-EANIGKSELSLALIDRGHQLVCDDVIDLKQENNQ 57
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance,
transferase; HET: SAH; 1.48A {Escherichia coli} PDB:
2xva_A* 4dq0_A* 2i6g_A*
Length = 199
Score = 24.7 bits (54), Expect = 5.9
Identities = 9/21 (42%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 17 AGAGLGRSYALLLAERGASVV 37
G G GR +L LA G V
Sbjct: 39 LGCGNGR-NSLYLAANGYDVD 58
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 24.8 bits (54), Expect = 6.0
Identities = 8/22 (36%), Positives = 9/22 (40%), Gaps = 3/22 (13%)
Query: 16 GAGAGLGRSYALLLAERGASVV 37
G G G LA+RG V
Sbjct: 60 GCGEGW---LLRALADRGIEAV 78
>2zog_A Cytosolic non-specific dipeptidase; metallopeptidase,
protein-inhibitor complex, CNDP2, CNDP DIP 2, bestatin,
L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus
musculus} PDB: 2zof_A*
Length = 479
Score = 25.0 bits (55), Expect = 6.1
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 28 LLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGK 68
+ G SV + D+G Q+ DG ++ ++ S K
Sbjct: 55 DVQRLGGSVELVDIGKQKLPDGSEIPLPPILLGKLGSDPQK 95
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET:
SAM; 1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 24.8 bits (54), Expect = 6.3
Identities = 7/25 (28%), Positives = 8/25 (32%), Gaps = 1/25 (4%)
Query: 17 AGAGLGRSYALLLAERGASVVVNDL 41
G G G A + G V D
Sbjct: 50 LGCGAGY-QAEAMLAAGFDVDATDG 73
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 24.8 bits (54), Expect = 6.5
Identities = 12/24 (50%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 18 GAGLGRSYALLLAERGASVVVNDL 41
G G L LAERG VV DL
Sbjct: 49 ACGTGI-PTLELAERGYEVVGLDL 71
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.30A {Chromobacterium violaceum
atcc 12472}
Length = 381
Score = 24.7 bits (53), Expect = 7.1
Identities = 5/29 (17%), Positives = 13/29 (44%)
Query: 10 RVAIVTGAGAGLGRSYALLLAERGASVVV 38
++ ++ AGL + L A ++ +
Sbjct: 2 KILVIGAGPAGLVFASQLKQARPLWAIDI 30
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 24.7 bits (55), Expect = 7.2
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 47 GDGKSSKAADTVVAE 61
G GKSS A DT+ AE
Sbjct: 34 GSGKSSLAMDTIYAE 48
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis,
merohedral twinning, enzyme mechanism, hydroxylase,
flavoprotein; HET: FAD VAK; 2.49A {Streptomyces
purpurascens}
Length = 535
Score = 24.6 bits (54), Expect = 7.2
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Query: 11 VAIVTGAG-AGLGRSYALLLAERGASVVV 38
V +V GAG GL S A+ LA +G V+V
Sbjct: 8 VLVV-GAGLGGL--STAMFLARQGVRVLV 33
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 24.5 bits (53), Expect = 7.4
Identities = 7/24 (29%), Positives = 10/24 (41%), Gaps = 1/24 (4%)
Query: 18 GAGLGRSYALLLAERGASVVVNDL 41
AG+GR + G V +L
Sbjct: 90 AAGMGR-LTFPFLDLGWEVTALEL 112
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Length = 500
Score = 24.6 bits (54), Expect = 7.6
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
Query: 11 VAIVTGAG-AGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKA 54
V +V GAG AG+ A L G VVV + + S+
Sbjct: 14 VIVV-GAGPAGM--MLAGELRLAGVEVVVLE---RLVERTGESRG 52
>1xmt_A Putative acetyltransferase; structural genomics, protein
structure initiative, CESG, AT1G77540, center for
eukaryotic structural genomics; 1.15A {Arabidopsis
thaliana} SCOP: d.108.1.1 PDB: 2q44_A 2evn_A 2il4_A*
2q4y_A*
Length = 103
Score = 23.9 bits (52), Expect = 7.7
Identities = 11/72 (15%), Positives = 19/72 (26%), Gaps = 11/72 (15%)
Query: 2 PEQVRF--DGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVV 59
+ RF + A + G+ L+ V + G G +S
Sbjct: 12 EGKRRFETEDHEAFIEYKMRNNGKVMDLV------HTYVPS---FKRGLGLASHLCVAAF 62
Query: 60 AEIRSKGGKAVP 71
S +P
Sbjct: 63 EHASSHSISIIP 74
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD;
1.75A {Pseudomonas aeruginosa}
Length = 399
Score = 24.5 bits (54), Expect = 7.8
Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 7/39 (17%)
Query: 1 MPEQVRFDGRVAIVTGAG-AGLGRSYALLLAERGASVVV 38
M + D V I G G G A LL +G VVV
Sbjct: 2 MTDN-HID--VLIN-GCGIGGA--MLAYLLGRQGHRVVV 34
>2yyb_A Hypothetical protein TTHA1606; structural genomics, unknown
function; 2.60A {Thermus thermophilus}
Length = 242
Score = 24.5 bits (54), Expect = 8.0
Identities = 7/20 (35%), Positives = 11/20 (55%), Gaps = 3/20 (15%)
Query: 2 PEQVRFDGRVAIVTGAGAGL 21
+ V V +V+G+G GL
Sbjct: 160 LDHVE---TVILVSGSGTGL 176
>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid
synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A*
3tdc_A*
Length = 793
Score = 24.4 bits (53), Expect = 8.2
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 21 LGRSYALLLAERGASVV-VNDLGGQRDGDG 49
L + + E G S + D+ G+ +G G
Sbjct: 210 LNSVHCKHVEEDGESRYVITDIIGKEEGLG 239
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 24.5 bits (53), Expect = 8.3
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 3/22 (13%)
Query: 16 GAGAGLGRSYALLLAERGASVV 37
GAG G Y++ LA +G V
Sbjct: 42 GAGTG---GYSVALANQGLFVY 60
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein;
HET: AHZ; 2.70A {Neurospora crassa}
Length = 344
Score = 24.3 bits (52), Expect = 8.8
Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 2/38 (5%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVV 38
+ D + IV GL +Y L + +
Sbjct: 74 LDAHAETD--IVIVGAGSCGLSAAYVLSTLRPDLRITI 109
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 24.3 bits (53), Expect = 8.8
Identities = 5/24 (20%), Positives = 7/24 (29%), Gaps = 1/24 (4%)
Query: 18 GAGLGRSYALLLAERGASVVVNDL 41
G G L + + DL
Sbjct: 45 ACGTGN-LTENLCPKFKNTWAVDL 67
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus
sphaericus} SCOP: c.2.1.7 c.58.1.1
Length = 364
Score = 24.4 bits (54), Expect = 8.9
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 8 DGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAE 61
+G V G G + ++ L GA +VV D+ + + AD V
Sbjct: 172 EGLAVSVQGLGN-VAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPN 224
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 24.0 bits (52), Expect = 9.0
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 17 AGAGLGRSYALLLAERGASVVVNDL 41
AG G GR L+++G V+ DL
Sbjct: 53 AGCGQGR-IGGYLSKQGHDVLGTDL 76
>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure,
metal binding protein; HET: ATP; 1.60A {Azotobacter
vinelandii}
Length = 270
Score = 24.0 bits (52), Expect = 9.8
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 4 QVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVND 40
R + ++ I TGAG R + A G V
Sbjct: 65 AARKNHKLLIGTGAGT-RARHLYSIAAGLGLPAGVLA 100
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.135 0.370
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,623,352
Number of extensions: 99284
Number of successful extensions: 908
Number of sequences better than 10.0: 1
Number of HSP's gapped: 638
Number of HSP's successfully gapped: 350
Length of query: 100
Length of database: 6,701,793
Length adjustment: 66
Effective length of query: 34
Effective length of database: 4,859,007
Effective search space: 165206238
Effective search space used: 165206238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.2 bits)