BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9145
(111 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Human Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Human Receptor Protein Tyrosine Phosphatase Lar In
Complex With Sucrose Octasulphate
Length = 214
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDP-ATQMDA 84
G F+C A G+P+P ITW K G ++ + + + E+ G + + I P Q D
Sbjct: 21 GGVASFVCQATGEPKPRITWMKKGKKVSSQRF-EVIEFDDGAGSV---LRIQPLRVQRDE 76
Query: 85 GIYECYADN 93
IYEC A N
Sbjct: 77 AIYECTATN 85
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 31 FICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKS-KIEIDPATQMDAGIYEC 89
+C A G P P I+WFKD + V+ + +++S ++I+ + + D G YEC
Sbjct: 128 MLCAAGGNPDPEISWFKD------FLPVDPATSNGRIKQLRSGALQIESSEESDQGKYEC 181
Query: 90 YADN 93
A N
Sbjct: 182 VATN 185
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDP-ATQMDA 84
G F+C A G+P+P ITW K G ++ + + + E+ G + + I P Q D
Sbjct: 22 GGVASFVCQATGEPKPRITWMKKGKKVSSQRF-EVIEFDDGAGSV---LRIQPLRVQRDE 77
Query: 85 GIYECYADN 93
IYEC A N
Sbjct: 78 AIYECTATN 86
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKS-KIEIDPATQMDA 84
G +C A G P P I+WFKD + V+ + +++S ++I+ + + D
Sbjct: 124 GRTATMLCAAGGNPDPEISWFKD------FLPVDPAASNGRIKQLRSGALQIESSEESDQ 177
Query: 85 GIYECYADN 93
G YEC A N
Sbjct: 178 GKYECVATN 186
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 23 SVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDP-ATQ 81
V G FIC A G PRP I W K G ++ + + E+ G+ + + I P T
Sbjct: 18 GVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRF-EVIEFDDGSGSV---LRIQPLRTP 73
Query: 82 MDAGIYECYADNMYNVDTRTFKTDFSI 108
D IYEC A N NV + T ++
Sbjct: 74 RDEAIYECVASN--NVGEISVSTRLTV 98
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 19/101 (18%)
Query: 6 SSLSLKRSCQQVKYFPLSVLGHKI---------VFICMAKGKPRPHITWFKDGVELYAHM 56
+ L++ R Q + FP +G ++ +C A G P P ITWFKD +
Sbjct: 94 TRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKD------FL 147
Query: 57 YVNLHEWHYGTDRIKSK----IEIDPATQMDAGIYECYADN 93
V+ + +++S+ ++I+ + + D G YEC A N
Sbjct: 148 PVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATN 188
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 20 FPLSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEI-DP 78
FPL K+ C KG P+PHI W +G ++ M ++ Y + + I +P
Sbjct: 17 FPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGM-----DFRYSV--VDGSLLINNP 69
Query: 79 ATQMDAGIYECYADNMY-NVDTRTFKTDFS 107
DAG Y+C A N + + +R K F+
Sbjct: 70 NKTQDAGTYQCIATNSFGTIVSREAKLQFA 99
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 9/65 (13%)
Query: 33 CMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYAD 92
C A G+P+P W K+G L + + + GT + I DAG+Y+C A+
Sbjct: 317 CKANGRPKPTYRWLKNGDPLLTRDRIQIEQ---GT------LNITIVNLSDAGMYQCVAE 367
Query: 93 NMYNV 97
N + V
Sbjct: 368 NKHGV 372
Score = 30.8 bits (68), Expect = 0.22, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 33/80 (41%), Gaps = 17/80 (21%)
Query: 20 FPLSVLGHK---IVFICMAKGKPRPHITWFK-DGVELYAHMYVNLHEWHYGTDRIKSK-- 73
FP +V K + C A G P P I W + DG + R KS
Sbjct: 211 FPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARK-----------ARRHKSNGI 259
Query: 74 IEIDPATQMDAGIYECYADN 93
+EI Q DAG YEC A+N
Sbjct: 260 LEIPNFQQEDAGSYECVAEN 279
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 20 FPLSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEI-DP 78
FPL K+ C KG P+PHI W +G ++ M ++ Y + + I +P
Sbjct: 16 FPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGM-----DFRYSV--VDGSLLINNP 68
Query: 79 ATQMDAGIYECYADNMY-NVDTRTFKTDFS 107
DAG Y+C A N + + +R K F+
Sbjct: 69 NKTQDAGTYQCIATNSFGTIVSREAKLQFA 98
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 9/65 (13%)
Query: 33 CMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYAD 92
C A G+P+P W K+G L + + + GT + I DAG+Y+C A+
Sbjct: 316 CKANGRPKPTYRWLKNGDPLLTRDRIQIEQ---GT------LNITIVNLSDAGMYQCVAE 366
Query: 93 NMYNV 97
N + V
Sbjct: 367 NKHGV 371
Score = 30.8 bits (68), Expect = 0.22, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 33/80 (41%), Gaps = 17/80 (21%)
Query: 20 FPLSVLGHK---IVFICMAKGKPRPHITWFK-DGVELYAHMYVNLHEWHYGTDRIKSK-- 73
FP +V K + C A G P P I W + DG + R KS
Sbjct: 210 FPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARK-----------ARRHKSNGI 258
Query: 74 IEIDPATQMDAGIYECYADN 93
+EI Q DAG YEC A+N
Sbjct: 259 LEIPNFQQEDAGSYECVAEN 278
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 22 LSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDP-AT 80
+ V G F+C A G P+P +TW K G ++ + + + E+ + + I P T
Sbjct: 17 IGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETI-EFDESAGAV---LRIQPLRT 72
Query: 81 QMDAGIYECYADNMYN 96
D IYEC A N +
Sbjct: 73 PRDENIYECVAQNPHG 88
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 31 FICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKS-KIEIDPATQMDAGIYEC 89
+C A G P P ITWFKD + V+ + +++S ++I+ + + D G YEC
Sbjct: 128 MLCAASGNPDPEITWFKD------FLPVDPSTSNGRIKQLRSGGLQIESSEETDQGKYEC 181
Query: 90 YADNMYNV 97
A N V
Sbjct: 182 VASNSAGV 189
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Human Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 22 LSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDP-AT 80
+ V G F+C A G P+P +TW K G ++ + + + E+ + + I P T
Sbjct: 17 IGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETI-EFDESAGAV---LRIQPLRT 72
Query: 81 QMDAGIYECYADN 93
D +YEC A N
Sbjct: 73 PRDENVYECVAQN 85
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 16/102 (15%)
Query: 6 SSLSLKRSCQQVKYFPLSVLGHKI---------VFICMAKGKPRPHITWFKDGVELYAHM 56
+ L++ R Q FP +G ++ +C A G P P ITWFKD +
Sbjct: 94 AKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKD------FL 147
Query: 57 YVNLHEWHYGTDRIKS-KIEIDPATQMDAGIYECYADNMYNV 97
V+ + +++S ++I+ + + D G YEC A N V
Sbjct: 148 PVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGV 189
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Human Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 22 LSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDP-AT 80
+ V G F+C A G P+P +TW K G ++ + + + E+ + + I P T
Sbjct: 17 IGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETI-EFDESAGAV---LRIQPLRT 72
Query: 81 QMDAGIYECYADN 93
D +YEC A N
Sbjct: 73 PRDENVYECVAQN 85
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 16/102 (15%)
Query: 6 SSLSLKRSCQQVKYFPLSVLGHKI---------VFICMAKGKPRPHITWFKDGVELYAHM 56
+ L++ R Q FP +G ++ +C A G P P ITWFKD +
Sbjct: 94 AKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKD------FL 147
Query: 57 YVNLHEWHYGTDRIKS-KIEIDPATQMDAGIYECYADNMYNV 97
V+ + +++S ++I+ + + D G YEC A N V
Sbjct: 148 PVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGV 189
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 16/102 (15%)
Query: 6 SSLSLKRSCQQVKYFPLSVLGHKI---------VFICMAKGKPRPHITWFKDGVELYAHM 56
+ L++ R Q FP +G ++ +C A G P P ITWFKD +
Sbjct: 94 AKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKD------FL 147
Query: 57 YVNLHEWHYGTDRIKS-KIEIDPATQMDAGIYECYADNMYNV 97
V+ + +++S ++I+ + + D G YEC A N V
Sbjct: 148 PVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGV 189
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 22 LSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDP-AT 80
+ V G F+C A G P+P +TW K G ++ + + + E+ + + I P T
Sbjct: 17 IGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETI-EFDESAGAV---LRIQPLRT 72
Query: 81 QMDAGIYECYADN 93
D +YEC A N
Sbjct: 73 PRDENVYECVAQN 85
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 9/71 (12%)
Query: 25 LGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
+G + + C+A GKPRP + W +DG L + + + G + SK+ ++ D+
Sbjct: 308 IGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS----GGELRFSKLVLE-----DS 358
Query: 85 GIYECYADNMY 95
G+Y+C A+N +
Sbjct: 359 GMYQCVAENKH 369
Score = 30.0 bits (66), Expect = 0.33, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 13/78 (16%)
Query: 23 SVLGHKIVFICMAKGKPRPHITWFK-DGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQ 81
++ G + C A G P P I W K DG + +W + + I
Sbjct: 219 ALTGQMVTLECFAFGNPVPQIKWRKLDGSQ--------TSKWLSS----EPLLHIQNVDF 266
Query: 82 MDAGIYECYADNMYNVDT 99
D G YEC A+N+ DT
Sbjct: 267 EDEGTYECEAENIKGRDT 284
Score = 28.9 bits (63), Expect = 0.66, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 20 FPLSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPA 79
FP K+ C A+ P W +G EL M + D + S +P
Sbjct: 16 FPEGSAEEKVTLTCRARANPPATYRWKMNGTEL--KMGPDSRYRLVAGDLVIS----NPV 69
Query: 80 TQMDAGIYECYADN 93
DAG Y+C A N
Sbjct: 70 KAKDAGSYQCVATN 83
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Query: 21 PLSV-LGHKIVFICMA-KGKPRPHITWFKDGVELY---AHMYVNLHEWHYGTDRIKSKIE 75
P SV +G++ V C G P +WFKDG+ + A + D +
Sbjct: 113 PSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLI 172
Query: 76 IDPATQMDAGIYECYADNMYNVDTRT 101
DP T D+G Y C A N Y R+
Sbjct: 173 FDPVTAFDSGEYYCQAQNGYGTAMRS 198
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
Query: 25 LGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
+G + + C A GKPRP + W ++G L + V + D SK+ ++ D+
Sbjct: 307 IGSNLRWGCAAAGKPRPTVRWLRNGEPLASQNRVEV----LAGDLRFSKLSLE-----DS 357
Query: 85 GIYECYADNMY 95
G+Y+C A+N +
Sbjct: 358 GMYQCVAENKH 368
Score = 33.1 bits (74), Expect = 0.037, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 11/77 (14%)
Query: 23 SVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQM 82
+++G ++ C A G P P I W K L +W + ++I +
Sbjct: 218 ALVGQQVTLECFAFGNPVPRIKWRKVDGSLSP-------QWTTA----EPTLQIPSVSFE 266
Query: 83 DAGIYECYADNMYNVDT 99
D G YEC A+N DT
Sbjct: 267 DEGTYECEAENSKGRDT 283
Score = 30.8 bits (68), Expect = 0.21, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 20 FPLSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPA 79
FP +++ C A+ P W +G E+ + H+ G I ++P
Sbjct: 15 FPEESTEEQVLLACRARASPPATYRWKMNGTEMKLEPG-SRHQLVGGNLVI-----MNPT 68
Query: 80 TQMDAGIYECYADN 93
DAG+Y+C A N
Sbjct: 69 KAQDAGVYQCLASN 82
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 23 SVLGHKIVFICMAK-GKPRPHITWFKDGVELYAHMYVN--LHEWHYGTDRIKSKIEIDPA 79
+ +G++ V C + G P TWFKDG+ + + Y + ++ DP
Sbjct: 119 ATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPL 178
Query: 80 TQMDAGIYECYADNMY 95
+ D G Y C A N Y
Sbjct: 179 SASDTGEYSCEARNGY 194
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 29 IVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYE 88
+ F C + G P+P + W K+G E + ++ Y T I +D D G Y
Sbjct: 34 VKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYAT----WSIIMDSVVPSDKGNYT 89
Query: 89 CYADNMYNVDTRTFKTDF 106
C +N Y T++ D
Sbjct: 90 CIVENEYGSINHTYQLDV 107
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKD--------GVELYAHMYVNLHEWHYGTDRIKSKIE 75
LG + F+C P+PHI W K G + ++ + TD+ +
Sbjct: 128 ALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLH 187
Query: 76 IDPATQMDAGIYECYADN 93
+ + DAG Y C A N
Sbjct: 188 LRNVSFEDAGEYTCLAGN 205
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 29 IVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYE 88
+ F C + G P+P + W K+G E + ++ Y T I +D D G Y
Sbjct: 35 VKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYAT----WSIIMDSVVPSDKGNYT 90
Query: 89 CYADNMYNVDTRTFKTDF 106
C +N Y T++ D
Sbjct: 91 CIVENEYGSINHTYQLDV 108
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKD--------GVELYAHMYVNLHEWHYGTDRIKSKIE 75
LG + F+C P+PHI W K G + ++ + TD+ +
Sbjct: 129 ALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLH 188
Query: 76 IDPATQMDAGIYECYADN 93
+ + DAG Y C A N
Sbjct: 189 LRNVSFEDAGEYTCLAGN 206
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Query: 29 IVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYE 88
+ F C + G P P + W K+G E + ++ Y T I +D D G Y
Sbjct: 34 VKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYAT----WSIIMDSVVPSDKGNYT 89
Query: 89 CYADNMYNVDTRTFKTDF 106
C +N Y T++ D
Sbjct: 90 CIVENEYGSINHTYQLDV 107
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKD--------GVELYAHMYVNLHEWHYGTDRIKSKIE 75
LG + F+C P+PHI W K G + ++ + TD+ +
Sbjct: 128 ALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLH 187
Query: 76 IDPATQMDAGIYECYADN 93
+ + DAG Y C A N
Sbjct: 188 LRNVSFEDAGEYTCLAGN 205
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G+++ C P I+WF+DG L + Y N+ ++ + S +E+ P ++ D G
Sbjct: 33 GNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPS---ASYLEVTPDSENDFG 89
Query: 86 IYECYADNMYNVDTRTF 102
Y C A N ++ F
Sbjct: 90 NYNCTAVNRIGQESLEF 106
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 25 LGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
+GH ++ C A G P P+I W K+ V++ Y ++I+ + + D
Sbjct: 124 VGHTVLMTCKAIGNPTPNIYWIKN------QTKVDMSNPRYSLK--DGFLQIENSREEDQ 175
Query: 85 GIYECYADN 93
G YEC A+N
Sbjct: 176 GKYECVAEN 184
Score = 32.3 bits (72), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 25 LGHKIVFICMAKGKPRPHITWFKDGVELYA-HMYVNLHEWHYGTDRIKSKIEIDPA-TQM 82
+G F C A+G P P I W K+G ++ + E G S + I+P
Sbjct: 20 VGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGI----SILRIEPVRAGR 75
Query: 83 DAGIYECYADN 93
D YEC A+N
Sbjct: 76 DDAPYECVAEN 86
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 25 LGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
+G I C A G P P I WFKD L + L + + + I + D
Sbjct: 24 IGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNR-------NLTIRRVRKEDE 76
Query: 85 GIYECYA 91
G+Y C A
Sbjct: 77 GLYTCQA 83
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 25 LGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
+GH ++ C A G P P+I W K+ V++ Y ++I+ + + D
Sbjct: 126 VGHTVLMTCKAIGNPTPNIYWIKN------QTKVDMSNPRYSLK--DGFLQIENSREEDQ 177
Query: 85 GIYECYADNMYNVD 98
G YEC A+N +
Sbjct: 178 GKYECVAENSMGTE 191
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 25 LGHKIVFICMAKGKPRPHITWFKDGVELYA-HMYVNLHEWHYGTDRIKSKIEIDPA-TQM 82
+G F C A+G P P I W K+G ++ + E G S + I+P
Sbjct: 22 VGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGI----SILRIEPVRAGR 77
Query: 83 DAGIYECYADN 93
D YEC A+N
Sbjct: 78 DDAPYECVAEN 88
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G+ I C K P I W +D + L A NL + G I +EI P + D G
Sbjct: 115 GNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMI---LEIAPTSDNDFG 171
Query: 86 IYECYADN 93
Y C A N
Sbjct: 172 RYNCTATN 179
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 28 KIVFICMAKGKPRPHITW 45
++ +C A+G+P P ITW
Sbjct: 17 QVTLVCDAEGEPIPEITW 34
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G+ I C K P I W +D + L A NL + G I +EI P + D G
Sbjct: 115 GNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMI---LEIAPTSDNDFG 171
Query: 86 IYECYADN 93
Y C A N
Sbjct: 172 RYNCTATN 179
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 28 KIVFICMAKGKPRPHITW 45
++ +C A+G+P P ITW
Sbjct: 17 QVTLVCDAEGEPIPEITW 34
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 33 CMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYAD 92
C G P P ++W DG + + H+ + + S I I+P T DAGIY C A
Sbjct: 31 CKVSGLPTPDLSWQLDGKPVRPD---SAHKMLVRENGVHSLI-IEPVTSRDAGIYTCIAT 86
Query: 93 NMYNVDTRTFKTDFSITF 110
N R + FS+
Sbjct: 87 N------RAGQNSFSLEL 98
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G ++ F C A G P P I+WF++G + +E Y +++ + D G
Sbjct: 113 GEEMTFSCRASGSPEPAISWFRNG------KLIEENE-KYILKGSNTELTVRNIINSDGG 165
Query: 86 IYECYADNMYNVDTR 100
Y C A N D +
Sbjct: 166 PYVCRATNKAGEDEK 180
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G ++ F C A G P P I+WF++G + +E Y +++ + D G
Sbjct: 209 GEEMTFSCRASGSPEPAISWFRNG------KLIEENE-KYILKGSNTELTVRNIINSDGG 261
Query: 86 IYECYADNMYNVDTR 100
Y C A N D +
Sbjct: 262 PYVCRATNKAGEDEK 276
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 7 SLSLKRSCQQVKYFPLSVLGHKIVFICMAKGKPRPHITWFK-DGVELYAHMYVNLHEWHY 65
S++L + + LSV G F C A G+P I W+ G ++ + V + +
Sbjct: 1 SMALLQVTISLSKVELSV-GESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQK--- 55
Query: 66 GTDRIKSKIEIDPATQMDAGIYECYA 91
+ ++S++ I A DAGIY C A
Sbjct: 56 --EGVRSRLTIYNANIEDAGIYRCQA 79
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G K V C G P+P ++W K L + + + E G+ RI + + DAG
Sbjct: 115 GLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLE--SGSLRIHN------VQKEDAG 166
Query: 86 IYECYADN 93
Y C A N
Sbjct: 167 QYRCVAKN 174
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 31 FICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECY 90
F+C + P+P I+W ++ + + L + Y + I D GIY C
Sbjct: 27 FMCAVESYPQPEISWTRN------KILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCT 80
Query: 91 ADN 93
A+N
Sbjct: 81 ANN 83
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 13 SCQQVKYFPLSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKS 72
S Q + + G ++ F C A G P P I+WF++G + + L G++ +
Sbjct: 6 SMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILK----GSN---T 58
Query: 73 KIEIDPATQMDAGIYECYADNMYNVDTR 100
++ + D G Y C A N D +
Sbjct: 59 ELTVRNIINSDGGPYVCRATNKAGEDEK 86
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 28 KIVFICMAKGKPRPHITW 45
++ +C A+G+P P ITW
Sbjct: 111 QVTLVCDAEGEPIPEITW 128
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMD 83
V G + C+ G+P P + W K G +L A + D + + + A D
Sbjct: 27 VSGAEAELKCVVLGEPPPVVVWEKGGQQLAAS-----ERLSFPADGAEHGLLLTAALPTD 81
Query: 84 AGIYECYADN 93
AG+Y C A N
Sbjct: 82 AGVYVCRARN 91
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
F17r Mutant Complex
Length = 109
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMD 83
V G + C+ G+P P + W K G +L A + D + + + A D
Sbjct: 27 VSGAEAELKCVVLGEPPPVVVWEKGGQQLAAS-----ERLSFPADGAEHGLLLTAALPTD 81
Query: 84 AGIYECYADN 93
AG+Y C A N
Sbjct: 82 AGVYVCRARN 91
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 25 LGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
LG C G+P P I W++ G EL + ++ +D + + Q D
Sbjct: 21 LGEAAQLSCQIVGRPLPDIKWYRFGKEL-----IQSRKYKMSSDGRTHTLTVMTEEQEDE 75
Query: 85 GIYECYADN 93
G+Y C A N
Sbjct: 76 GVYTCIATN 84
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 25 LGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
+G I C A G P P I WFKD L + L + + + I + D
Sbjct: 680 IGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGN-------RNLTIRRVRKEDE 732
Query: 85 GIYECYA 91
G+Y C A
Sbjct: 733 GLYTCQA 739
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex
With Obscurin- Like 1
Length = 107
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMD 83
V G + C+ G+P P + W K G +L A + D + + + A D
Sbjct: 26 VSGAEAELKCVVLGEPPPVVVWEKGGQQLAAS-----ERLSFPADGAEHGLLLTAALPTD 80
Query: 84 AGIYECYADN 93
AG+Y C A N
Sbjct: 81 AGVYVCRARN 90
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human
Apep-1
Length = 99
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G ++ +G+P+P ++W ++ + E G R++ I A + DAG
Sbjct: 20 GQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLR----ILAAERGDAG 75
Query: 86 IYECYADNMYNV 97
Y C A N Y
Sbjct: 76 FYTCKAVNEYGA 87
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 25 LGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
LG + +C A G P P ++W KDG + + E H +D S++ I + D
Sbjct: 210 LGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDD--EKHIFSDD-SSELTIRNVDKNDE 266
Query: 85 GIYECYADN 93
Y C A+N
Sbjct: 267 AEYVCIAEN 275
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVEL 52
G + F C G P+P I WFKDG ++
Sbjct: 22 GMPVTFTCRVAGNPKPKIYWFKDGKQI 48
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVEL 52
G + F C G P+P I WFKDG ++
Sbjct: 23 GMPVTFTCRVAGNPKPKIYWFKDGKQI 49
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 35.0 bits (79), Expect = 0.011, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 35/80 (43%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G + C+A G P P I+W DG ++ + + ++ + S + I D G
Sbjct: 444 GPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGG 503
Query: 86 IYECYADNMYNVDTRTFKTD 105
+Y+C A + V + K +
Sbjct: 504 LYKCIAKSKVGVAEHSAKLN 523
Score = 33.5 bits (75), Expect = 0.031, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 15/69 (21%)
Query: 25 LGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
G VF C G P ++W KDG + H +S + I+ + D
Sbjct: 357 FGRPAVFTCQYTGNPIKTVSWMKDGKAI-GHS--------------ESVLRIESVKKEDK 401
Query: 85 GIYECYADN 93
G+Y+C+ N
Sbjct: 402 GMYQCFVRN 410
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 33 CMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSK---IEIDPATQMDAGIYEC 89
C A G P+P +TW K V Y +L + +D I+ + + +D + + G Y C
Sbjct: 736 CKADGFPKPQVTW-KKAVGDTPGEYKDLKK----SDNIRVEEGTLHVDNIQKTNEGYYLC 790
Query: 90 YADN 93
A N
Sbjct: 791 EAIN 794
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 15/86 (17%)
Query: 29 IVFICMAKGKPRPHITWFK--DGVELYAHMYVNLHEWHYGTDRIKS---KIEIDPATQMD 83
+ +C A+G P P W+K +G + +N DR+K + I A D
Sbjct: 266 MALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLN--------DRVKQVSGTLIIKDAVVED 317
Query: 84 AGIYECYADNMYNVDTRTFKTDFSIT 109
+G Y C +N +V + +T ++T
Sbjct: 318 SGKYLCVVNN--SVGGESVETVLTVT 341
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 10/83 (12%)
Query: 27 HKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSK---IEIDPATQMD 83
+ + F C A G P P I+W K+G E E G +++ + + ++ D
Sbjct: 31 NTVRFRCPAAGNPTPSISWLKNGREFRG-------EHRIGGIKLRHQQWSLVMESVVPSD 83
Query: 84 AGIYECYADNMYNVDTRTFKTDF 106
G Y C +N + +T+ D
Sbjct: 84 RGNYTCVVENKFGSIRQTYTLDV 106
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 34/94 (36%), Gaps = 21/94 (22%)
Query: 23 SVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVN--------------LHEWHYGTD 68
+VLG + F C +PHI W K H+ VN L W +
Sbjct: 126 AVLGSDVEFHCKVYSDAQPHIQWLK-------HVEVNGSKVGPDGTPYVTVLKSWISESV 178
Query: 69 RIKSKIEIDPATQMDAGIYECYADNMYNVDTRTF 102
++ + ++ D G Y C A N V + F
Sbjct: 179 EADVRLRLANVSERDGGEYLCRATNFIGVAEKAF 212
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 16/108 (14%)
Query: 1 MPTEDSSLSLKRSCQQVKYF----PLSV---LGHKIVFICMAKGKPRPHITWFKDGVELY 53
+ T SS L S +V F P+SV LG F C G ITW KD E+
Sbjct: 180 LGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIR 239
Query: 54 AHMYVNLHEWHYGTDRIK--SKIEIDPATQMDAGIYECYADNMYNVDT 99
+Y ++ + + + T+ DAG Y CYA N+ D+
Sbjct: 240 PG-------GNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDS 280
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 18 KYFPLSVL-GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEI 76
K P+ L G + C +G P ++W KD EL + + ++ T I I
Sbjct: 390 KPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTS-----IHI 444
Query: 77 DPATQMDAGIYECYADNMYNVDT 99
D G Y+C A N DT
Sbjct: 445 LNVDSADIGEYQCKASNDVGSDT 467
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 5/83 (6%)
Query: 25 LGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
LG + F C G ++W+KDG L + H + ++I Q
Sbjct: 115 LGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHN-----VATLQILQTDQSHV 169
Query: 85 GIYECYADNMYNVDTRTFKTDFS 107
G Y C A N + + K S
Sbjct: 170 GQYNCSASNPLGTASSSAKLTLS 192
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Query: 23 SVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQM 82
+ +G I C G P I W+K+ +L + + + + +K++
Sbjct: 17 AAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVD-----HS 71
Query: 83 DAGIYECYADN 93
D G Y C A+N
Sbjct: 72 DVGEYTCKAEN 82
>pdb|3QQN|A Chain A, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
pdb|3QQN|B Chain B, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
Length = 137
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 20/83 (24%)
Query: 25 LGHKIVFICMAKGKPRPHITWF-------------KDGVEL-YAHMYVNLHEWHYGTDRI 70
+G + C A G P P I W+ DG L H++ H+
Sbjct: 35 VGGSVELHCEAVGSPVPEIQWWFEGQGPNDIXSQLWDGARLDRVHIHATYHQ------HA 88
Query: 71 KSKIEIDPATQMDAGIYECYADN 93
S I ID + D G YEC A N
Sbjct: 89 ASTISIDTLVEEDTGTYECRASN 111
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From
The Neural Cell Adhesion Molecule
Length = 107
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 25 LGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHY-GTDRIKSKIEIDPATQMD 83
L + C A G P P +TW KDG + + ++Y G++ I K++ + D
Sbjct: 27 LSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELIIKKVD-----KSD 81
Query: 84 AGIYECYADN 93
Y C A+N
Sbjct: 82 EAEYICIAEN 91
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 31 FICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECY 90
F A G+PRP W KDG + L E D+ +EI D+G+Y C
Sbjct: 26 FAVKATGEPRPTAIWTKDGKAITQGGKYKLSE-----DKGGFFLEIHKTDTSDSGLYTCT 80
Query: 91 ADN 93
N
Sbjct: 81 VKN 83
>pdb|3QR2|A Chain A, Wild Type Cd147 Ig0 Domain
pdb|3QR2|B Chain B, Wild Type Cd147 Ig0 Domain
Length = 137
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 20/83 (24%)
Query: 25 LGHKIVFICMAKGKPRPHITWF-------------KDGVEL-YAHMYVNLHEWHYGTDRI 70
+G + C A G P P I W+ DG L H++ H+
Sbjct: 35 VGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQ------HA 88
Query: 71 KSKIEIDPATQMDAGIYECYADN 93
S I ID + D G YEC A N
Sbjct: 89 ASTISIDTLVEEDTGTYECRASN 111
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 34.3 bits (77), Expect = 0.018, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 10/83 (12%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSK---IEIDPATQM 82
+ + F C A G P P I+W K+G E E G +++ + + ++
Sbjct: 138 ANTVRFRCPAAGNPTPSISWLKNGREFRG-------EHRIGGIKLRHQQWSLVMESVVPS 190
Query: 83 DAGIYECYADNMYNVDTRTFKTD 105
D G Y C +N + +T+ D
Sbjct: 191 DRGNYTCVVENKFGSIRQTYTLD 213
Score = 29.3 bits (64), Expect = 0.51, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 8/79 (10%)
Query: 23 SVLGHKIVFICMAKGKPRPHITWFKD--------GVELYAHMYVNLHEWHYGTDRIKSKI 74
+VLG + F C +PHI W K G + ++ V TD+ +
Sbjct: 234 AVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVL 293
Query: 75 EIDPATQMDAGIYECYADN 93
+ T DAG Y C A N
Sbjct: 294 SLHNVTFEDAGEYTCLAGN 312
>pdb|1HCF|X Chain X, Crystal Structure Of Trkb-D5 Bound To Neurotrophin-45
pdb|1HCF|Y Chain Y, Crystal Structure Of Trkb-D5 Bound To Neurotrophin-45
Length = 101
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 14/78 (17%)
Query: 36 KGKPRPHITWFKDGVELYAHMYV-------NLHEWHYGTDRIKSKIEIDPATQMDAGIYE 88
KG P+P + WF +G L Y+ N E+H +++D T M+ G Y
Sbjct: 26 KGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYH-------GCLQLDNPTHMNNGDYT 78
Query: 89 CYADNMYNVDTRTFKTDF 106
A N Y D + F
Sbjct: 79 LIAKNEYGKDEKQISAHF 96
>pdb|1WWB|X Chain X, Ligand Binding Domain Of Human Trkb Receptor
Length = 103
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 14/79 (17%)
Query: 35 AKGKPRPHITWFKDGVELYAHMYV-------NLHEWHYGTDRIKSKIEIDPATQMDAGIY 87
KG P+P + WF +G L Y+ N E+H +++D T M+ G Y
Sbjct: 25 VKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYH-------GCLQLDNPTHMNNGDY 77
Query: 88 ECYADNMYNVDTRTFKTDF 106
A N Y D + F
Sbjct: 78 TLIAKNEYGKDEKQISAHF 96
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 33.5 bits (75), Expect = 0.029, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 8/65 (12%)
Query: 29 IVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYE 88
I F C GKP P + W K+G + Y + S + I + D G Y+
Sbjct: 330 IEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVG--------GSNLRILGVVKSDEGFYQ 381
Query: 89 CYADN 93
C A+N
Sbjct: 382 CVAEN 386
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 11/70 (15%)
Query: 22 LSVLGHKIVFICMAKGKPRPHITWFK--DGVELYAHMYVNLHEWHYGTDRIKSKIEIDPA 79
+++ G V C G P P TW + + ++L + Y L S + I
Sbjct: 232 IAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLG---------GSNLLISNV 282
Query: 80 TQMDAGIYEC 89
T D+G Y C
Sbjct: 283 TDDDSGTYTC 292
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G + C G+P P +TW G ++++ H + TD + + I +D Q D G
Sbjct: 22 GKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIEN--TDDLTTLIIMDVQKQ-DGG 78
Query: 86 IYECYADNMYNVDTRTFK 103
+Y N + D+ T
Sbjct: 79 LYTLSLGNEFGSDSATVN 96
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 5/68 (7%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G F C G+P P +TW + G + T + KS EI D G
Sbjct: 29 GESARFSCDTDGEPVPTVTWLRKG-----QVLSTSARHQVTTTKYKSTFEISSVQASDEG 83
Query: 86 IYECYADN 93
Y +N
Sbjct: 84 NYSVVVEN 91
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 5/68 (7%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G F C G+P P +TW + G + T + KS EI D G
Sbjct: 23 GESARFSCDTDGEPVPTVTWLRKG-----QVLSTSARHQVTTTKYKSTFEISSVQASDEG 77
Query: 86 IYECYADN 93
Y +N
Sbjct: 78 NYSVVVEN 85
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 10/80 (12%)
Query: 29 IVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSK---IEIDPATQMDAG 85
+ F C A G P P + W K+G E E G +++++ + ++ D G
Sbjct: 37 VKFRCPAGGNPMPTMRWLKNGKEFK-------QEHRIGGYKVRNQHWSLIMESVVPSDKG 89
Query: 86 IYECYADNMYNVDTRTFKTD 105
Y C +N Y T+ D
Sbjct: 90 NYTCVVENEYGSINHTYHLD 109
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 23 SVLGHKIVFICMAKGKPRPHITWFK 47
+V+G + F+C +PHI W K
Sbjct: 130 TVVGGDVEFVCKVYSDAQPHIQWIK 154
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 33.5 bits (75), Expect = 0.034, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 15/69 (21%)
Query: 25 LGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
G VF C G P ++W KDG + +S + I+ + D
Sbjct: 321 FGRPAVFTCQYTGNPIKTVSWMKDGKAI---------------GHSESVLRIESVKKEDK 365
Query: 85 GIYECYADN 93
G+Y+C+ N
Sbjct: 366 GMYQCFVRN 374
Score = 33.1 bits (74), Expect = 0.039, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 17/113 (15%)
Query: 3 TEDSSLSLKRSCQQVKYFPLSVL-GHKIVFICMAKGKPRPHITWFK--DGVELYAHMYVN 59
TE S S R+ V+ PL ++ H I +C A+G P P W+K +G + +N
Sbjct: 204 TEPISSSAPRTPALVQK-PLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLN 262
Query: 60 LHEWHYGTDRIKS---KIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFSIT 109
DR+K + I A D+G Y C +N +V + +T ++T
Sbjct: 263 --------DRVKQVSGTLIIKDAVVEDSGKYLCVVNN--SVGGESVETVLTVT 305
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 33.1 bits (74), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 10/81 (12%)
Query: 29 IVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSK---IEIDPATQMDAG 85
+ F C A G P P + W K+G E E G +++++ + ++ D G
Sbjct: 37 VKFRCPAGGNPMPTMRWLKNGKEFK-------QEHRIGGYKVRNQHWSLIMESVVPSDKG 89
Query: 86 IYECYADNMYNVDTRTFKTDF 106
Y C +N Y T+ D
Sbjct: 90 NYTCVVENEYGSINHTYHLDV 110
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 23 SVLGHKIVFICMAKGKPRPHITWFK 47
+V+G + F+C +PHI W K
Sbjct: 130 TVVGGDVEFVCKVYSDAQPHIQWIK 154
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 33.1 bits (74), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G + C G+P P +TW G ++++ H + TD + + I +D Q D G
Sbjct: 20 GKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIEN--TDDLTTLIIMDVQKQ-DGG 76
Query: 86 IYECYADNMYNVDTRTFK 103
+Y N + D+ T
Sbjct: 77 LYTLSLGNEFGSDSATVN 94
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 33.1 bits (74), Expect = 0.037, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 15/69 (21%)
Query: 25 LGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
G VF C G P ++W KDG + H +S + I+ + D
Sbjct: 327 FGRPAVFTCQYTGNPIKTVSWMKDGKAI-GHS--------------ESVLRIESVKKEDK 371
Query: 85 GIYECYADN 93
G+Y+C+ N
Sbjct: 372 GMYQCFVRN 380
Score = 33.1 bits (74), Expect = 0.042, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 17/113 (15%)
Query: 3 TEDSSLSLKRSCQQVKYFPLSVL-GHKIVFICMAKGKPRPHITWFK--DGVELYAHMYVN 59
TE S S R+ V+ PL ++ H I +C A+G P P W+K +G + +N
Sbjct: 210 TEPISSSAPRTPALVQK-PLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLN 268
Query: 60 LHEWHYGTDRIKS---KIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFSIT 109
DR+K + I A D+G Y C +N +V + +T ++T
Sbjct: 269 --------DRVKQVSGTLIIKDAVVEDSGKYLCVVNN--SVGGESVETVLTVT 311
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 10/80 (12%)
Query: 29 IVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSK---IEIDPATQMDAG 85
+ F C A G P P + W K+G E E G +++++ + ++ D G
Sbjct: 29 VKFRCPAGGNPMPTMRWLKNGKEFK-------QEHRIGGYKVRNQHWSLIMESVVPSDKG 81
Query: 86 IYECYADNMYNVDTRTFKTD 105
Y C +N Y T+ D
Sbjct: 82 NYTCVVENEYGSINHTYHLD 101
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 23 SVLGHKIVFICMAKGKPRPHITWFKD--------GVELYAHMYVNLHEWHYGTDRIKSKI 74
+V+G + F+C +PHI W K G + ++ V TD+ +
Sbjct: 122 TVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVL 181
Query: 75 EIDPATQMDAGIYECYADNMYNVD 98
I T DAG Y C A N +
Sbjct: 182 YIRNVTFEDAGEYTCLAGNSIGIS 205
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 33.1 bits (74), Expect = 0.038, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 15/69 (21%)
Query: 25 LGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
G VF C G P ++W KDG + +S + I+ + D
Sbjct: 324 FGRPAVFTCQYTGNPIKTVSWMKDGKAI---------------GHSESVLRIESVKKEDK 368
Query: 85 GIYECYADN 93
G+Y+C+ N
Sbjct: 369 GMYQCFVRN 377
Score = 28.5 bits (62), Expect = 0.93, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 15/84 (17%)
Query: 31 FICMAKGKPRPHITWFK--DGVELYAHMYVNLHEWHYGTDRIKS---KIEIDPATQMDAG 85
+CMA+ P P W+K +G + +N DR+K + I A D+G
Sbjct: 235 LLCMAQSYPTPSFRWYKFIEGTTRKQAVVLN--------DRVKQVSGTLIIKDAVVEDSG 286
Query: 86 IYECYADNMYNVDTRTFKTDFSIT 109
Y C +N +V + +T ++T
Sbjct: 287 KYLCVVNN--SVGGESVETVLTVT 308
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 33.1 bits (74), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 10/80 (12%)
Query: 29 IVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSK---IEIDPATQMDAG 85
+ F C A G P P + W K+G E E G +++++ + ++ D G
Sbjct: 29 VKFRCPAGGNPMPTMRWLKNGKEFK-------QEHRIGGYKVRNQHWSLIMESVVPSDKG 81
Query: 86 IYECYADNMYNVDTRTFKTD 105
Y C +N Y T+ D
Sbjct: 82 NYTCVVENEYGSINHTYHLD 101
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 23 SVLGHKIVFICMAKGKPRPHITWFKD--------GVELYAHMYVNLHEWHYGTDRIKSKI 74
+V+G + F+C +PHI W K G + ++ V TD+ +
Sbjct: 122 TVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVL 181
Query: 75 EIDPATQMDAGIYECYADNMYNVD 98
I T DAG Y C A N +
Sbjct: 182 YIRNVTFEDAGEYTCLAGNSIGIS 205
>pdb|2E7C|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Myosin-Binding Protein C, Fast-Type
Length = 118
Score = 33.1 bits (74), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 8/77 (10%)
Query: 25 LGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
+G ++ + +GKPRP + W K G L + H T + + A + D+
Sbjct: 38 VGEQLNLVVPFQGKPRPQVVWTKGGAPL------DTSRVHVRTSDFDTVFFVRQAARSDS 91
Query: 85 GIYECYA--DNMYNVDT 99
G YE +NM + T
Sbjct: 92 GEYELSVQIENMKDTAT 108
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 10/80 (12%)
Query: 29 IVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSK---IEIDPATQMDAG 85
+ F C A G P P + W K+G E E G +++++ + ++ D G
Sbjct: 28 VKFRCPAGGNPMPTMRWLKNGKEFK-------QEHRIGGYKVRNQHWSLIMESVVPSDKG 80
Query: 86 IYECYADNMYNVDTRTFKTD 105
Y C +N Y T+ D
Sbjct: 81 NYTCVVENEYGSINHTYHLD 100
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 23 SVLGHKIVFICMAKGKPRPHITWFKD--------GVELYAHMYVNLHEWHYGTDRIKSKI 74
+V+G + F+C +PHI W K G + ++ V TD+ +
Sbjct: 121 TVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVL 180
Query: 75 EIDPATQMDAGIYECYADNMYNVD 98
I T DAG Y C A N +
Sbjct: 181 YIRNVTFEDAGEYTCLAGNSIGIS 204
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 10/80 (12%)
Query: 29 IVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSK---IEIDPATQMDAG 85
+ F C A G P P + W K+G E E G +++++ + ++ D G
Sbjct: 27 VKFRCPAGGNPMPTMRWLKNGKEFK-------QEHRIGGYKVRNQHWSLIMESVVPSDKG 79
Query: 86 IYECYADNMYNVDTRTFKTD 105
Y C +N Y T+ D
Sbjct: 80 NYTCVVENEYGSINHTYHLD 99
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 23 SVLGHKIVFICMAKGKPRPHITWFKD--------GVELYAHMYVNLHEWHYGTDRIKSKI 74
+V+G + F+C +PHI W K G + ++ V TD+ +
Sbjct: 120 TVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVL 179
Query: 75 EIDPATQMDAGIYECYADNMYNVD 98
I T DAG Y C A N +
Sbjct: 180 YIRNVTFEDAGEYTCLAGNSIGIS 203
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 33.1 bits (74), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 10/80 (12%)
Query: 29 IVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSK---IEIDPATQMDAG 85
+ F C A G P P + W K+G E E G +++++ + ++ D G
Sbjct: 31 VKFRCPAGGNPMPTMRWLKNGKEF-------KQEHRIGGYKVRNQHWSLIMESVVPSDKG 83
Query: 86 IYECYADNMYNVDTRTFKTD 105
Y C +N Y T+ D
Sbjct: 84 NYTCVVENEYGSINHTYHLD 103
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 32.7 bits (73), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 10/80 (12%)
Query: 29 IVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSK---IEIDPATQMDAG 85
+ F C A G P P + W K+G E E G +++++ + ++ D G
Sbjct: 29 VKFRCPAGGNPMPTMRWLKNGKEFK-------QEHRIGGYKVRNQHWSLIMESVVPSDKG 81
Query: 86 IYECYADNMYNVDTRTFKTD 105
Y C +N Y T+ D
Sbjct: 82 NYTCVVENEYGSINHTYHLD 101
Score = 28.9 bits (63), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 23 SVLGHKIVFICMAKGKPRPHITWFKD--------GVELYAHMYVNLHEWHYGTDRIKSKI 74
+V+G + F+C +PHI W K G + ++ V TD+ +
Sbjct: 122 TVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVL 181
Query: 75 EIDPATQMDAGIYECYADNMYNVD 98
I T DAG Y C A N +
Sbjct: 182 YIRNVTFEDAGEYTCLAGNSIGIS 205
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 32.7 bits (73), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 10/80 (12%)
Query: 29 IVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSK---IEIDPATQMDAG 85
+ F C A G P P + W K+G E E G +++++ + ++ D G
Sbjct: 30 VKFRCPAGGNPMPTMRWLKNGKEF-------KQEHRIGGYKVRNQHWSLIMESVVPSDKG 82
Query: 86 IYECYADNMYNVDTRTFKTD 105
Y C +N Y T+ D
Sbjct: 83 NYTCVVENEYGSINHTYHLD 102
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 10/80 (12%)
Query: 29 IVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSK---IEIDPATQMDAG 85
+ F C A G P P + W K+G E E G +++++ + ++ D G
Sbjct: 26 VKFRCPAGGNPMPTMRWLKNGKEF-------KQEHRIGGYKVRNQHWSLIMESVVPSDKG 78
Query: 86 IYECYADNMYNVDTRTFKTD 105
Y C +N Y T+ D
Sbjct: 79 NYTCVVENEYGSINHTYHLD 98
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 12/84 (14%)
Query: 21 PLSV---LGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIK--SKIE 75
P+SV LG F C G ITW KD E+ +Y ++ + +
Sbjct: 12 PVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPG-------GNYKMTLVENTATLT 64
Query: 76 IDPATQMDAGIYECYADNMYNVDT 99
+ T+ DAG Y CYA N+ D+
Sbjct: 65 VLKVTKGDAGQYTCYASNVAGKDS 88
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 18 KYFPLSVL-GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEI 76
K P+ L G + C +G P ++W KD EL + + ++ T I I
Sbjct: 198 KPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTS-----IHI 252
Query: 77 DPATQMDAGIYECYADN 93
D G Y+C A N
Sbjct: 253 LNVDSADIGEYQCKASN 269
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 32.7 bits (73), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 12/84 (14%)
Query: 21 PLSV---LGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIK--SKIE 75
P+SV LG F C G ITW KD E+ +Y ++ + +
Sbjct: 12 PVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPG-------GNYKMTLVENTATLT 64
Query: 76 IDPATQMDAGIYECYADNMYNVDT 99
+ T+ DAG Y CYA N+ D+
Sbjct: 65 VLKVTKGDAGQYTCYASNVAGKDS 88
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 18 KYFPLSVL-GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEI 76
K P+ L G + C +G P ++W KD EL + + ++ T I I
Sbjct: 198 KPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTS-----IHI 252
Query: 77 DPATQMDAGIYECYADN 93
D G Y+C A N
Sbjct: 253 LNVDSADIGEYQCKASN 269
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 32.7 bits (73), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 9/49 (18%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGV-------ELYAHMYVNLHEWHYGT 67
G +V C+A G P PH WFK+ + +LY YV+L H GT
Sbjct: 133 GSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLE--HQGT 179
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 32.7 bits (73), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 10/72 (13%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVEL-YAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
G V C +G P P ITW +G + YA + +++ I A D
Sbjct: 26 GQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTC---------EAGVAELHIQDALPEDH 76
Query: 85 GIYECYADNMYN 96
G Y C A+N
Sbjct: 77 GTYTCLAENALG 88
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 32.7 bits (73), Expect = 0.058, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G ++ C+A G P P I W+K G +L + + + I ++ D+G
Sbjct: 237 GMDLLLECIASGVPTPDIAWYKKGGDLPSD--------KAKFENFNKALRITNVSEEDSG 288
Query: 86 IYECYADN 93
Y C A N
Sbjct: 289 EYFCLASN 296
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 31 FICMAKGKPRPHITWFKDGVEL 52
+C A G P+P + W +G L
Sbjct: 332 LVCRANGNPKPTVQWMVNGEPL 353
>pdb|3BFO|A Chain A, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|B Chain B, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|C Chain C, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|D Chain D, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 91
Score = 32.7 bits (73), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 9/49 (18%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGV-------ELYAHMYVNLHEWHYGT 67
G +V C+A G P PH WFK+ + +LY YV+L H GT
Sbjct: 18 GSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLE--HQGT 64
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 32.7 bits (73), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDG--VELYAHMYVNLHEWHY-GTDRIKSKIEIDPATQM 82
G + C +G P I W KDG V+ +Y+ + E H+ G +KS +
Sbjct: 17 GQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKS------VERS 70
Query: 83 DAGIYECYADN 93
DAG Y C ++
Sbjct: 71 DAGRYWCQVED 81
>pdb|2EO1|A Chain A, Solution Structure Of The Ig Domain Of Human Obscn
Protein
Length = 102
Score = 32.3 bits (72), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 38 KPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNM 94
+ + +TW+KDG +L + V + G R ++ + A Q +AG Y C A
Sbjct: 37 QAQTEVTWYKDGKKLSSSSKVRVE--AVGCTR---RLVVQQAGQAEAGEYSCEAGGQ 88
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From
Human Roundabout Homo1
Length = 118
Score = 32.3 bits (72), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
Query: 30 VFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYEC 89
V C+A G P P I W KDGV L + + + G +I+ A D G Y C
Sbjct: 27 VLSCVATGSPVPTILWRKDGV-LVSTQDSRIKQLENGVLQIRY------AKLGDTGRYTC 79
Query: 90 YADN 93
A
Sbjct: 80 IAST 83
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 32.3 bits (72), Expect = 0.077, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 7/69 (10%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELY-AHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
GH + F+C A G P P I W L A L + GT +E+ A D
Sbjct: 400 GHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGT------LEVRYAQVQDN 453
Query: 85 GIYECYADN 93
G Y C A N
Sbjct: 454 GTYLCIAAN 462
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 32.0 bits (71), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 12/70 (17%)
Query: 36 KGKPRPHITWFKDGVELYAHMYVNLHEWHYG-TDRIK----SKIEIDPATQMDAGIYECY 90
KG P P + W KDGV L +L +G + R++ + I +D G Y+C
Sbjct: 134 KGIPEPTLIWIKDGVPLD-----DLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCI 188
Query: 91 ADNMYNVDTR 100
A N+ V TR
Sbjct: 189 AQNL--VGTR 196
Score = 32.0 bits (71), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 33 CMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYAD 92
C +GKP P I WFKDG E + H + + + + D G Y C A
Sbjct: 31 CKVEGKPEPTIEWFKDG-EPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAK 89
Query: 93 N 93
N
Sbjct: 90 N 90
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 32.0 bits (71), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 12/70 (17%)
Query: 36 KGKPRPHITWFKDGVELYAHMYVNLHEWHYG-TDRIK----SKIEIDPATQMDAGIYECY 90
KG P P + W KDGV L +L +G + R++ + I +D G Y+C
Sbjct: 134 KGIPEPTLIWIKDGVPLD-----DLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCI 188
Query: 91 ADNMYNVDTR 100
A N+ V TR
Sbjct: 189 AQNL--VGTR 196
Score = 32.0 bits (71), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 33 CMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYAD 92
C +GKP P I WFKDG E + H + + + + D G Y C A
Sbjct: 31 CKVEGKPEPTIEWFKDG-EPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAK 89
Query: 93 N 93
N
Sbjct: 90 N 90
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 10/80 (12%)
Query: 29 IVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSK---IEIDPATQMDAG 85
+ F C A G P P W K+G E E G +++++ + + D G
Sbjct: 36 VKFRCPAGGNPXPTXRWLKNGKEFK-------QEHRIGGYKVRNQHWSLIXESVVPSDKG 88
Query: 86 IYECYADNMYNVDTRTFKTD 105
Y C +N Y T+ D
Sbjct: 89 NYTCVVENEYGSINHTYHLD 108
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 23 SVLGHKIVFICMAKGKPRPHITWFK 47
+V+G + F+C +PHI W K
Sbjct: 129 TVVGGDVEFVCKVYSDAQPHIQWIK 153
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 10/80 (12%)
Query: 29 IVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSK---IEIDPATQMDAG 85
+ F C A G P P W K+G E E G +++++ + + D G
Sbjct: 29 VKFRCPAGGNPXPTXRWLKNGKEFK-------QEHRIGGYKVRNQHWSLIXESVVPSDKG 81
Query: 86 IYECYADNMYNVDTRTFKTD 105
Y C +N Y T+ D
Sbjct: 82 NYTCVVENEYGSINHTYHLD 101
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 23 SVLGHKIVFICMAKGKPRPHITWFKD--------GVELYAHMYVNLHEWHYGTDRIKSKI 74
+V+G + F+C +PHI W K G + ++ V TD+ +
Sbjct: 122 TVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVL 181
Query: 75 EIDPATQMDAGIYECYADNMYNVD 98
I T DAG Y C A N +
Sbjct: 182 YIRNVTFEDAGEYTCLAGNSIGIS 205
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 9/76 (11%)
Query: 23 SVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQM 82
+++G + C A G P P I W K + M G I+++
Sbjct: 125 ALMGQNVTLECFALGNPVPDIRWRK----VLEPMPSTAEISTSGAVLKIFNIQLE----- 175
Query: 83 DAGIYECYADNMYNVD 98
D GIYEC A+N+ D
Sbjct: 176 DEGIYECEAENIRGKD 191
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 31 FICMAKGKPRPHITWFKDGVELYA-HMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYEC 89
+C G P+P + W++ G E+ A + + E+ G ++ I T DA +Y+
Sbjct: 24 LVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLI----IASVTDDDATVYQV 79
Query: 90 YADNM 94
A N
Sbjct: 80 RATNQ 84
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 37 GKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN 96
GKP P ITW K G +L + N H T S + + + DAG Y A N +
Sbjct: 130 GKPDPVITWQK-GQDLIDN---NGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFG 185
Query: 97 VDTRTFKTDFS 107
+D +T + D +
Sbjct: 186 IDQKTVELDVA 196
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 37 GKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN 96
GKP P ITW K G +L + N H T S + + + DAG Y A N +
Sbjct: 128 GKPDPVITWQK-GQDLIDN---NGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFG 183
Query: 97 VDTRTFKTDFS 107
+D +T + D +
Sbjct: 184 IDQKTVELDVA 194
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 31 FICMAKGKPRPHITWFKDGVELYA-HMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYEC 89
+C G P+P + W++ G E+ A + + E+ G ++ I T DA +Y+
Sbjct: 22 LVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLI----IASVTDDDATVYQV 77
Query: 90 YADN 93
A N
Sbjct: 78 RATN 81
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 37 GKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN 96
GKP P ITW K G +L + N H T S + + + DAG Y A N +
Sbjct: 130 GKPDPVITWQK-GQDLIDN---NGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFG 185
Query: 97 VDTRTFKTDFS 107
+D +T + D +
Sbjct: 186 IDQKTVELDVA 196
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 31 FICMAKGKPRPHITWFKDGVELYA-HMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYEC 89
+C G P+P + W++ G E+ A + + E+ G ++ I T DA +Y+
Sbjct: 24 LVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY----HQLIIASVTDDDATVYQV 79
Query: 90 YADN 93
A N
Sbjct: 80 RATN 83
>pdb|4HWU|A Chain A, Crystal Structure Of The Ig-C2 Type 1 Domain From Mouse
Fibroblast Growth Factor Receptor 2 (Fgfr2)
[nysgrc-005912]
pdb|4HWU|B Chain B, Crystal Structure Of The Ig-C2 Type 1 Domain From Mouse
Fibroblast Growth Factor Receptor 2 (Fgfr2)
[nysgrc-005912]
Length = 95
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 11/82 (13%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G + CM K I+W KDGV L + L I ++I AT D+G
Sbjct: 16 GESLELQCMLKDAAV--ISWTKDGVHLGPNNRTVL---------IGEYLQIKGATPRDSG 64
Query: 86 IYECYADNMYNVDTRTFKTDFS 107
+Y C A + +T F + +
Sbjct: 65 LYACTAARTVDSETWIFMVNVT 86
>pdb|2CR3|A Chain A, Solution Structure Of The First Ig-Like Domain Of Human
Fibroblast Growth Factor Receptor 1
Length = 99
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 9/65 (13%)
Query: 43 ITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTF 102
I W +DGV+L + ++E+ + D+G+Y C + DT F
Sbjct: 34 INWLRDGVQLAESNRTRI---------TGEEVEVQDSVPADSGLYACVTSSPSGSDTTYF 84
Query: 103 KTDFS 107
+ S
Sbjct: 85 SVNVS 89
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLH-EWHYGTDRIKSKIEIDPATQMDA 84
G F G P P ++WF+DG + + + G ++K+ I T+ ++
Sbjct: 20 GSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDG----RAKLTIPAVTKANS 75
Query: 85 GIYECYADNMYNVDTRT 101
G Y A N T T
Sbjct: 76 GRYSLKATNGSGQATST 92
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLH-EWHYGTDRIKSKIEIDPATQMDA 84
G F G P P ++WF+DG + + + G ++K+ I T+ ++
Sbjct: 20 GSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDG----RAKLTIPAVTKANS 75
Query: 85 GIYECYADNMYNVDTRT 101
G Y A N T T
Sbjct: 76 GRYSLKATNGSGQATST 92
>pdb|2VAJ|A Chain A, Crystal Structure Of Ncam2 Ig1 (I4122 Cell Unit)
Length = 93
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 25 LGHKIVFICMAKGKPRPHITWFK-DGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMD 83
+G F C A G+P I W+ G ++ + V + + + ++S++ I A D
Sbjct: 14 VGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQK-----EGVRSRLTIYNANIED 67
Query: 84 AGIYECYA 91
AGIY C A
Sbjct: 68 AGIYRCQA 75
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 25 LGHKIVFICMAKGKPRPHITWFK-DGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMD 83
+G F C A G+P I W+ G ++ + V + + + ++S++ I A D
Sbjct: 16 VGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQK-----EGVRSRLTIYNANIED 69
Query: 84 AGIYECYA 91
AGIY C A
Sbjct: 70 AGIYRCQA 77
>pdb|2ENS|A Chain A, Solution Structure Of The Third Ig-Like Domain From Human
Advanced Glycosylation End Product-Specific Receptor
Length = 96
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 26/83 (31%), Gaps = 14/83 (16%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G + C +P P I W KDGV L EI P D G
Sbjct: 25 GGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPV-----------LILPEIGP---QDQG 70
Query: 86 IYECYADNMYNVDTRTFKTDFSI 108
Y C A + + + SI
Sbjct: 71 TYSCVATHSSHGPQESRAVSISI 93
>pdb|2CKN|A Chain A, Nmr Structure Of The First Ig Module Of Mouse Fgfr1
Length = 95
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 9/65 (13%)
Query: 43 ITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTF 102
I W +DGV+L + ++E+ + D+G+Y C + DT F
Sbjct: 40 INWLRDGVQLVESNRTRI---------TGEEVEVRDSIPADSGLYACVTSSPSGSDTTYF 90
Query: 103 KTDFS 107
+ S
Sbjct: 91 SVNVS 95
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G + C G P P ++W K+ L + + NL + R + I+ + D+G
Sbjct: 237 GKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNL---KFEAGRT-AYFTINGVSTADSG 292
Query: 86 IYECYADNMYNVDTRTF 102
Y N Y +T F
Sbjct: 293 KYGLVVKNKYGSETSDF 309
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 17 VKYFPLSVLGH-KIVFIC-MAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKI 74
V+Y V G ++ C +A K HI W+KD E +++ E H D I + +
Sbjct: 11 VEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDERE------ISVDEKHDFKDGICTLL 64
Query: 75 EIDPATQMDAGIYE 88
I ++ DAGIYE
Sbjct: 65 -ITEFSKKDAGIYE 77
>pdb|2LE9|A Chain A, Ragec2-S100a13 Tetrameric Complex
pdb|2LE9|D Chain D, Ragec2-S100a13 Tetrameric Complex
Length = 93
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 26/83 (31%), Gaps = 14/83 (16%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G + C +P P I W KDGV L EI P D G
Sbjct: 18 GGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPV-----------LILPEIGP---QDQG 63
Query: 86 IYECYADNMYNVDTRTFKTDFSI 108
Y C A + + + SI
Sbjct: 64 TYSCVATHSSHGPQESRAVSISI 86
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
Query: 19 YFPLSVLGHKIV------FICMAKGKPRPHITWFKD 48
YF ++L ++V F C +G P P + WFKD
Sbjct: 43 YFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKD 78
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 29.3 bits (64), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G + C G P P ++W K+ L + NL + R + I+ + D+G
Sbjct: 132 GKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNL---KFEAGRT-AYFTINGVSTADSG 187
Query: 86 IYECYADNMYNVDTRTF 102
Y N Y +T F
Sbjct: 188 KYGLVVKNKYGSETSDF 204
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKD 48
V G F C +G P P + WFKD
Sbjct: 54 VEGSAARFDCKVEGYPDPEVMWFKD 78
>pdb|1I8L|A Chain A, Human B7-1CTLA-4 Co-Stimulatory Complex
pdb|1I8L|B Chain B, Human B7-1CTLA-4 Co-Stimulatory Complex
Length = 208
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 16/55 (29%)
Query: 31 FICMAKGK-PRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
IC G P PH++W ++G EL A I + + DP T++ A
Sbjct: 126 IICSTSGGFPEPHLSWLENGEELNA---------------INTTVSQDPETELYA 165
>pdb|1DR9|A Chain A, Crystal Structure Of A Soluble Form Of B7-1 (Cd80)
Length = 201
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 16/55 (29%)
Query: 31 FICMAKGK-PRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
IC G P PH++W ++G EL A I + + DP T++ A
Sbjct: 126 IICSTSGGFPEPHLSWLENGEELNA---------------INTTVSQDPETELYA 165
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 28.9 bits (63), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDG 49
G C A+G+P P I W+K G
Sbjct: 24 GEPATLNCKAEGRPTPTIEWYKGG 47
Score = 28.9 bits (63), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 15/79 (18%)
Query: 22 LSVLGHKIVFICMA-KGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRI---KSKIEID 77
+ +G V C +G P P I+W KDG L +RI K+ I
Sbjct: 122 MVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDK-----------DERITIRGGKLMIT 170
Query: 78 PATQMDAGIYECYADNMYN 96
+ DAG Y C NM
Sbjct: 171 YTRKSDAGKYVCVGTNMVG 189
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 28.9 bits (63), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDG 49
G C A+G+P P I W+K G
Sbjct: 24 GEPATLNCKAEGRPTPTIEWYKGG 47
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 28.5 bits (62), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 37 GKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKI-EIDPATQMDAGIYECYADNMY 95
G P P ++W+ +G + + +LH+ + S I E+ A+ DAG Y C A N
Sbjct: 31 GLPAPDVSWYLNGRTVQSD---DLHKMIVSEKGLHSLIFEVVRAS--DAGAYACVAKNRA 85
Query: 96 NVDTRTFKTD 105
T T + D
Sbjct: 86 GEATFTVQLD 95
>pdb|3P2T|A Chain A, Crystal Structure Of Leukocyte Ig-Like Receptor Lilrb4
(Ilt3LIR- 5CD85K)
Length = 196
Score = 28.5 bits (62), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 21 PLSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPAT 80
PL G + +C ++ + F E AH + L H G + +++ + P T
Sbjct: 109 PLVTSGKSVTLLCQSRSP----MDTFLLCKERAAHPLLCLRSEH-GAQQHQAEFPMSPVT 163
Query: 81 QMDAGIYECYADNMYN 96
+ G Y C++ + ++
Sbjct: 164 SVHGGTYRCFSSHGFS 179
>pdb|3QP3|A Chain A, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|B Chain B, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|C Chain C, Crystal Structure Of Titin Domain M4, Tetragonal Form
Length = 103
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 5/68 (7%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G FI + KP + W+ +GVEL + HY +EI D+G
Sbjct: 23 GQNTRFILNVQSKPTAEVKWYHNGVELQESSKI-----HYTNTSGVLTLEILDCHTDDSG 77
Query: 86 IYECYADN 93
Y N
Sbjct: 78 TYRAVCTN 85
>pdb|2Y23|A Chain A, Crystal Structure Of The Myomesin Domains My9-My11
Length = 312
Score = 28.5 bits (62), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 17 VKYFPLSVLGH-KIVFIC-MAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKI 74
V+Y V G ++ C +A K HI W+KD E +++ E H D I + +
Sbjct: 226 VEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDERE------ISVDEKHDFKDGICTLL 279
Query: 75 EIDPATQMDAGIYEC 89
I ++ DAGIYE
Sbjct: 280 -ITEFSKKDAGIYEV 293
>pdb|3RBS|A Chain A, Crystal Structure Of The Myomesin Domains 10 And 11
Length = 207
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 17 VKYFPLSVLGH-KIVFIC-MAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKI 74
V+Y V G ++ C +A K HI W+KD E +++ E H D I + +
Sbjct: 121 VEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDERE------ISVDEKHDFKDGICTLL 174
Query: 75 EIDPATQMDAGIYEC 89
I ++ DAGIYE
Sbjct: 175 -ITEFSKKDAGIYEV 188
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From
Human Roundabout Homolog 2
Length = 100
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 9/60 (15%)
Query: 33 CMAKGKPRPHITWFKDGVELYAH-MYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYA 91
C A G P P I+W K+G + E GT +IK + I D G Y C A
Sbjct: 30 CKATGDPLPVISWLKEGFTFPGRDPRATIQE--QGTLQIK-NLRIS-----DTGTYTCVA 81
>pdb|1GL4|B Chain B, Nidogen-1 G2PERLECAN IG3 COMPLEX
Length = 98
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 28/78 (35%), Gaps = 13/78 (16%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRI--KSKIEIDPATQMD 83
G + FIC AK K Y ++ LH + + + I D
Sbjct: 25 GADVTFICTAKSK-----------SPAYTLVWTRLHNGKLPSRAMDFNGILTIRNVQPSD 73
Query: 84 AGIYECYADNMYNVDTRT 101
AG Y C NM+ +D T
Sbjct: 74 AGTYVCTGSNMFAMDQGT 91
>pdb|4EXP|X Chain X, Structure Of Mouse Interleukin-34 In Complex With Mouse
Fms
Length = 283
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 83 DAGIYECYADNMYNVDTRTFKTDFSI 108
DAGIY C A N +V TRT +F +
Sbjct: 256 DAGIYSCVASN--DVGTRTATMNFQV 279
>pdb|3EJJ|X Chain X, Structure Of M-Csf Bound To The First Three Domains Of Fms
Length = 289
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 83 DAGIYECYADNMYNVDTRTFKTDFSI 108
DAGIY C A N +V TRT +F +
Sbjct: 256 DAGIYSCVASN--DVGTRTATMNFQV 279
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 61 HEWHYG--TDRIKSKIEIDPATQMDAGIYECYADNMY 95
+ WH+G ++ + I A D+G++ CYA+N +
Sbjct: 235 NSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTF 271
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 61 HEWHYG--TDRIKSKIEIDPATQMDAGIYECYADNMY 95
+ WH+G ++ + I A D+G++ CYA+N +
Sbjct: 260 NSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTF 296
>pdb|1L6Z|A Chain A, Crystal Structure Of Murine Ceacam1a[1,4]: A Coronavirus
Receptor And Cell Adhesion Molecule In The Cea Family
Length = 216
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 71 KSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFSITFD 111
S + IDP + DAG Y+C N +V R+ I FD
Sbjct: 162 NSILRIDPIKREDAGEYQCEISNPVSV-RRSNSIKLDIIFD 201
>pdb|4EOW|H Chain H, Crystal Structure Of A Disease-Associated Anti-Human
Gm-Csf Autoantibody Mb007
Length = 228
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Query: 9 SLKRSCQQVKYFPLSVLGHKIVFICMAKGKPRPHITWF--KDGVELYAHMYVNLHEWHYG 66
S+K SC+ Y S + I ++ A G+ + W + GV YA + +
Sbjct: 17 SVKVSCKASGY---SFSRYGIKWVRQAPGQGLEWMGWINTRSGVPAYAQGFTGRFVFSLD 73
Query: 67 TDRIKSKIEIDPATQMDAGIYEC 89
T + +EI D GIY C
Sbjct: 74 TSVDTAFLEISSLKTEDTGIYYC 96
>pdb|2PET|A Chain A, Lutheran Glycoprotein, N-Terminal Domains 1 And 2.
pdb|2PF6|A Chain A, Lutheran Glycoprotein, N-Terminal Domains 1 And 2
pdb|2PF6|B Chain B, Lutheran Glycoprotein, N-Terminal Domains 1 And 2
Length = 231
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 30 VFICMAK-GKPRPHITWFKDGVELYAHMYVN 59
+ C ++ G P P ITW+++G L + +N
Sbjct: 138 IATCNSRNGNPAPKITWYRNGQRLEVPVEMN 168
>pdb|3R4D|A Chain A, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
pdb|3R4D|C Chain C, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
Length = 208
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 71 KSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFSITFD 111
S + IDP + DAG Y+C N +V R+ I FD
Sbjct: 162 NSILRIDPIKREDAGEYQCEISNPVSV-RRSNSIKLDIIFD 201
>pdb|2O26|X Chain X, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|Y Chain Y, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|U Chain U, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|W Chain W, Structure Of A Class Iii Rtk Signaling Assembly
Length = 290
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 45 WFKDGVELYAHMYVNLHEWHYGT---DRIKSKIEIDPATQMDAGIYECYADNMY 95
W K + V + WH G +R + + I A D+G++ CYA+N +
Sbjct: 223 WLKMNPQPQHIAQVKHNSWHRGDFNYER-QETLTISSARVDDSGVFMCYANNTF 275
>pdb|1SY6|A Chain A, Crystal Structure Of Cd3gammaepsilon Heterodimer In
Complex With Okt3 Fab Fragment
Length = 204
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 15/61 (24%)
Query: 29 IVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYE 88
++ C A+ K +ITWFKDG ++ + + +W+ G++ DP G+Y+
Sbjct: 21 VLLTCDAEAK---NITWFKDG-KMIGFLTEDKKKWNLGSN------AKDP-----RGMYQ 65
Query: 89 C 89
C
Sbjct: 66 C 66
>pdb|1OGM|X Chain X, Dex49a From Penicillium Minioluteum
pdb|1OGO|X Chain X, Dex49a From Penicillium Minioluteum Complex With
Isomaltose
Length = 574
Score = 25.8 bits (55), Expect = 6.0, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 48 DGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYAD 92
DG E+Y + V+ WH D I KI A+ A I++C+ D
Sbjct: 376 DGPEIYPNSVVHDVFWHVNDDAI--KIYYSGASVSRATIWKCHND 418
>pdb|1ADQ|A Chain A, Crystal Structure Of A Human Igm Rheumatoid Factor Fab
In Complex With Its Autoantigen Igg Fc
Length = 206
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/64 (20%), Positives = 28/64 (43%)
Query: 30 VFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYEC 89
V + +++ P+ W+ DGV+++ + T R+ S + + +D Y+C
Sbjct: 25 VVVDVSQEDPQVQFNWYVDGVQVHNAKTKPREQQFNSTYRVVSVLTVLHQNWLDGKEYKC 84
Query: 90 YADN 93
N
Sbjct: 85 KVSN 88
>pdb|1G1C|A Chain A, I1 Domain From Titin
pdb|1G1C|B Chain B, I1 Domain From Titin
Length = 99
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 37 GKPRPHITWFKDGVEL 52
GKP P W+K+GV++
Sbjct: 31 GKPDPECEWYKNGVKI 46
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,559,522
Number of Sequences: 62578
Number of extensions: 143247
Number of successful extensions: 716
Number of sequences better than 100.0: 153
Number of HSP's better than 100.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 457
Number of HSP's gapped (non-prelim): 229
length of query: 111
length of database: 14,973,337
effective HSP length: 75
effective length of query: 36
effective length of database: 10,279,987
effective search space: 370079532
effective search space used: 370079532
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)