Query psy9145
Match_columns 111
No_of_seqs 106 out of 1644
Neff 11.2
Searched_HMMs 46136
Date Fri Aug 16 20:06:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9145.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9145hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04975 Ig4_SCFR_like Fourth i 99.8 3.2E-17 6.9E-22 87.3 11.2 87 22-108 14-101 (101)
2 cd05745 Ig3_Peroxidasin Third 99.8 1.6E-17 3.5E-22 83.9 8.5 74 25-106 1-74 (74)
3 cd05737 Ig_Myomesin_like_C C-t 99.8 5E-17 1.1E-21 85.4 10.6 81 22-106 12-92 (92)
4 cd05762 Ig8_MLCK Eighth immuno 99.8 1.1E-16 2.3E-21 85.0 11.9 81 22-107 11-91 (98)
5 cd05894 Ig_C5_MyBP-C C5 immuno 99.8 1.1E-16 2.4E-21 83.0 11.4 80 22-106 6-86 (86)
6 cd05852 Ig5_Contactin-1 Fifth 99.7 6.2E-17 1.3E-21 81.5 8.9 73 26-106 1-73 (73)
7 cd05851 Ig3_Contactin-1 Third 99.7 1.3E-16 2.8E-21 83.1 10.2 76 22-106 12-87 (88)
8 cd05735 Ig8_DSCAM Eight immuno 99.7 4.7E-16 1E-20 81.0 12.1 81 26-107 1-82 (88)
9 cd05859 Ig4_PDGFR-alpha Fourth 99.7 1.6E-16 3.5E-21 84.6 10.1 86 22-107 14-100 (101)
10 cd05863 Ig2_VEGFR-3 Second imm 99.7 8.5E-17 1.8E-21 79.5 8.3 67 29-108 1-67 (67)
11 cd05855 Ig_TrkB_d5 Fifth domai 99.7 2.5E-16 5.4E-21 80.2 10.2 76 31-106 3-78 (79)
12 cd05867 Ig4_L1-CAM_like Fourth 99.7 4.6E-16 9.9E-21 79.0 10.4 74 26-106 1-75 (76)
13 cd05892 Ig_Myotilin_C C-termin 99.7 3.8E-16 8.2E-21 79.0 9.7 74 29-106 1-75 (75)
14 cd05730 Ig3_NCAM-1_like Third 99.7 6E-16 1.3E-20 81.7 10.9 80 22-108 14-94 (95)
15 cd05891 Ig_M-protein_C C-termi 99.7 7.2E-16 1.6E-20 80.9 10.8 81 22-106 12-92 (92)
16 cd05869 Ig5_NCAM-1 Fifth immun 99.7 5.6E-16 1.2E-20 82.1 10.5 84 23-106 14-97 (97)
17 cd05748 Ig_Titin_like Immunogl 99.7 6E-16 1.3E-20 78.1 10.1 73 29-106 2-74 (74)
18 cd05857 Ig2_FGFR Second immuno 99.7 9.7E-16 2.1E-20 79.3 11.1 81 22-106 5-85 (85)
19 cd05728 Ig4_Contactin-2-like F 99.7 4.3E-16 9.4E-21 80.7 9.7 76 22-106 10-85 (85)
20 cd05732 Ig5_NCAM-1_like Fifth 99.7 6.6E-16 1.4E-20 81.6 10.6 85 22-106 12-96 (96)
21 cd04969 Ig5_Contactin_like Fif 99.7 3E-16 6.6E-21 79.0 8.9 73 26-106 1-73 (73)
22 cd05723 Ig4_Neogenin Fourth im 99.7 5.2E-16 1.1E-20 77.8 9.6 71 28-106 1-71 (71)
23 cd04972 Ig_TrkABC_d4 Fourth do 99.7 8.6E-16 1.9E-20 80.3 10.7 80 22-106 11-90 (90)
24 cd05747 Ig5_Titin_like M5, fif 99.7 1.7E-15 3.6E-20 79.5 11.4 78 22-104 14-91 (92)
25 cd04976 Ig2_VEGFR Second immun 99.7 3.4E-16 7.3E-21 78.5 8.2 71 29-108 1-71 (71)
26 cd05868 Ig4_NrCAM Fourth immun 99.7 1.8E-15 3.8E-20 76.8 10.3 75 26-106 1-75 (76)
27 cd04978 Ig4_L1-NrCAM_like Four 99.7 2.3E-15 5.1E-20 76.2 10.5 75 26-106 1-75 (76)
28 cd05744 Ig_Myotilin_C_like Imm 99.7 1.9E-15 4.2E-20 76.5 10.1 74 29-106 1-75 (75)
29 cd04968 Ig3_Contactin_like Thi 99.7 3.1E-15 6.8E-20 77.9 11.1 76 22-106 12-87 (88)
30 cd05864 Ig2_VEGFR-2 Second imm 99.7 5.5E-16 1.2E-20 77.3 7.8 68 30-107 2-69 (70)
31 cd05893 Ig_Palladin_C C-termin 99.7 1.6E-15 3.5E-20 76.7 9.6 74 29-106 1-75 (75)
32 cd05870 Ig5_NCAM-2 Fifth immun 99.7 1.5E-15 3.2E-20 80.6 9.7 85 22-106 12-98 (98)
33 cd05743 Ig_Perlecan_D2_like Im 99.7 1.7E-15 3.6E-20 77.2 9.4 77 26-107 1-77 (78)
34 cd04971 Ig_TrKABC_d5 Fifth dom 99.7 3.9E-15 8.4E-20 76.3 10.8 76 31-106 3-80 (81)
35 PF07679 I-set: Immunoglobulin 99.7 5.1E-15 1.1E-19 77.2 11.0 80 22-106 11-90 (90)
36 cd05865 Ig1_NCAM-1 First immun 99.7 4.3E-15 9.2E-20 78.5 10.5 81 22-106 11-95 (96)
37 cd05746 Ig4_Peroxidasin Fourth 99.7 1.9E-15 4.1E-20 75.3 7.7 68 29-104 1-68 (69)
38 cd05773 Ig8_hNephrin_like Eigh 99.6 2.2E-14 4.7E-19 77.5 12.3 82 25-107 22-105 (109)
39 cd05856 Ig2_FGFRL1-like Second 99.6 3.4E-15 7.3E-20 76.6 8.7 77 23-106 6-82 (82)
40 cd05876 Ig3_L1-CAM Third immun 99.6 2.5E-15 5.3E-20 75.3 7.9 70 29-106 1-70 (71)
41 cd05739 Ig3_RPTP_IIa_LAR_like 99.6 8.3E-15 1.8E-19 73.0 9.3 68 26-104 1-68 (69)
42 cd05760 Ig2_PTK7 Second immuno 99.6 1E-14 2.2E-19 74.2 9.3 74 29-109 1-75 (77)
43 cd05764 Ig_2 Subgroup of the i 99.6 1.1E-14 2.4E-19 73.5 9.4 73 26-106 1-74 (74)
44 cd05854 Ig6_Contactin-2 Sixth 99.6 4.2E-14 9E-19 73.2 11.1 79 27-107 1-82 (85)
45 cd05763 Ig_1 Subgroup of the i 99.6 1.4E-14 3.1E-19 73.2 9.1 73 29-106 1-74 (75)
46 cd04973 Ig1_FGFR First immunog 99.6 1.2E-14 2.7E-19 74.2 8.9 75 22-106 5-79 (79)
47 cd05725 Ig3_Robo Third immunog 99.6 9.6E-15 2.1E-19 72.7 7.9 69 29-106 1-69 (69)
48 cd07693 Ig1_Robo First immunog 99.6 5.8E-14 1.3E-18 74.4 11.4 85 22-106 12-99 (100)
49 cd05726 Ig4_Robo Fhird immunog 99.6 1.6E-14 3.5E-19 75.5 8.9 80 26-108 1-83 (90)
50 cd05858 Ig3_FGFR-2 Third immun 99.6 3.1E-14 6.7E-19 74.4 9.9 81 26-106 1-89 (90)
51 cd05731 Ig3_L1-CAM_like Third 99.6 1.2E-14 2.6E-19 72.7 7.9 70 29-106 1-70 (71)
52 cd05758 Ig5_KIRREL3-like Fifth 99.6 1.4E-13 3.1E-18 73.0 12.1 82 22-104 12-97 (98)
53 cd05848 Ig1_Contactin-5 First 99.6 4.9E-14 1.1E-18 74.2 10.1 70 24-100 17-87 (94)
54 cd05740 Ig_CEACAM_D4 Fourth im 99.6 4.6E-14 1E-18 73.9 9.8 76 22-106 14-90 (91)
55 cd05736 Ig2_Follistatin_like S 99.6 5.7E-14 1.2E-18 71.2 9.6 74 29-107 1-74 (76)
56 cd04974 Ig3_FGFR Third immunog 99.6 6.2E-14 1.3E-18 73.3 9.7 81 26-106 1-89 (90)
57 cd05742 Ig1_VEGFR_like First i 99.6 7.3E-14 1.6E-18 72.1 9.4 81 26-106 1-83 (84)
58 cd05765 Ig_3 Subgroup of the i 99.6 1.8E-14 3.9E-19 73.8 7.1 78 26-106 1-81 (81)
59 cd05866 Ig1_NCAM-2 First immun 99.6 2E-13 4.4E-18 71.5 10.5 78 22-105 11-90 (92)
60 cd05750 Ig_Pro_neuregulin Immu 99.6 7.8E-14 1.7E-18 70.4 8.7 73 29-103 1-74 (75)
61 cd05738 Ig2_RPTP_IIa_LAR_like 99.6 7.6E-14 1.6E-18 70.4 8.6 72 29-106 1-73 (74)
62 cd05724 Ig2_Robo Second immuno 99.6 1.1E-13 2.4E-18 71.6 9.2 76 22-105 7-85 (86)
63 cd05850 Ig1_Contactin-2 First 99.6 3.8E-13 8.1E-18 70.8 10.9 74 24-104 17-92 (94)
64 cd04970 Ig6_Contactin_like Six 99.6 3E-13 6.5E-18 69.9 10.4 79 27-107 1-82 (85)
65 cd07702 Ig2_VEGFR-1 Second imm 99.5 7.3E-14 1.6E-18 69.9 7.6 69 30-106 2-70 (72)
66 cd05729 Ig2_FGFR_like Second i 99.5 5.3E-13 1.2E-17 68.7 10.7 81 22-106 5-85 (85)
67 cd05756 Ig1_IL1R_like First im 99.5 1.6E-13 3.4E-18 72.3 8.5 78 22-106 10-94 (94)
68 cd05861 Ig1_PDGFR-alphabeta Fr 99.5 1.9E-12 4E-17 66.8 11.8 81 26-107 1-83 (84)
69 cd04977 Ig1_NCAM-1_like First 99.5 7.5E-13 1.6E-17 69.4 10.2 79 22-105 11-91 (92)
70 cd05853 Ig6_Contactin-4 Sixth 99.5 4.9E-13 1.1E-17 68.9 8.8 81 27-108 1-83 (85)
71 cd05722 Ig1_Neogenin First imm 99.5 1.2E-12 2.5E-17 69.1 9.9 79 22-106 10-95 (95)
72 cd05733 Ig6_L1-CAM_like Sixth 99.5 6.3E-13 1.4E-17 67.5 8.0 67 29-100 1-71 (77)
73 cd05849 Ig1_Contactin-1 First 99.5 2.7E-12 5.9E-17 67.4 10.6 67 25-100 18-86 (93)
74 cd05874 Ig6_NrCAM Sixth immuno 99.5 1.4E-12 3E-17 66.3 9.1 67 29-100 1-71 (77)
75 cd05749 Ig2_Tyro3_like Second 99.5 1.3E-12 2.7E-17 67.0 8.8 66 22-100 9-75 (81)
76 cd04967 Ig1_Contactin First Ig 99.5 5.1E-12 1.1E-16 66.1 10.4 70 24-100 17-87 (91)
77 cd05734 Ig7_DSCAM Seventh immu 99.4 4.5E-13 9.7E-18 68.4 6.1 74 29-105 1-78 (79)
78 cd05898 Ig5_KIRREL3 Fifth immu 99.4 1.1E-11 2.4E-16 65.5 11.5 82 22-104 12-97 (98)
79 cd05875 Ig6_hNeurofascin_like 99.4 2.7E-12 5.8E-17 65.2 8.9 68 29-101 1-72 (77)
80 cd05754 Ig3_Perlecan_like Thir 99.4 4.6E-12 1E-16 65.4 8.9 72 22-104 12-84 (85)
81 cd05895 Ig_Pro_neuregulin-1 Im 99.4 8.1E-12 1.8E-16 63.2 9.1 74 29-103 1-75 (76)
82 cd05752 Ig1_FcgammaR_like Frst 99.4 4.5E-12 9.9E-17 64.5 7.1 57 22-94 11-68 (78)
83 cd05882 Ig1_Necl-1 First (N-te 99.4 3.4E-11 7.5E-16 63.4 10.3 72 22-93 8-83 (95)
84 cd05860 Ig4_SCFR Fourth immuno 99.4 8E-11 1.7E-15 62.2 10.9 86 22-107 14-100 (101)
85 cd05757 Ig2_IL1R_like Second i 99.3 2.8E-11 6E-16 63.4 8.9 78 22-108 6-88 (92)
86 cd04979 Ig_Semaphorin_C Immuno 99.3 3E-11 6.4E-16 62.9 8.7 77 22-106 7-86 (89)
87 cd05873 Ig_Sema4D_like Immunog 99.3 5.4E-11 1.2E-15 61.6 9.4 64 22-95 7-71 (87)
88 cd07690 Ig1_CD4 First immunogl 99.3 6.3E-11 1.4E-15 62.3 8.0 78 22-99 3-92 (94)
89 cd07701 Ig1_Necl-3 First (N-te 99.3 1.3E-10 2.7E-15 61.3 9.1 80 21-105 7-94 (95)
90 smart00408 IGc2 Immunoglobulin 99.3 8.2E-11 1.8E-15 56.7 7.6 63 25-96 1-63 (63)
91 cd05862 Ig1_VEGFR First immuno 99.3 1.9E-10 4.1E-15 59.6 9.0 82 26-107 1-85 (86)
92 KOG3513|consensus 99.2 7.9E-11 1.7E-15 82.3 9.0 93 7-107 417-514 (1051)
93 cd05753 Ig2_FcgammaR_like Seco 99.2 1.3E-10 2.7E-15 59.9 7.6 64 22-98 10-74 (83)
94 smart00410 IG_like Immunoglobu 99.2 1.8E-09 4E-14 54.8 11.6 80 22-106 5-85 (86)
95 smart00409 IG Immunoglobulin. 99.2 1.8E-09 4E-14 54.8 11.6 80 22-106 5-85 (86)
96 KOG3513|consensus 99.2 2.4E-10 5.1E-15 80.0 10.3 78 22-108 342-422 (1051)
97 PF13895 Ig_2: Immunoglobulin 99.2 5.1E-10 1.1E-14 56.7 9.1 70 22-106 10-80 (80)
98 cd05871 Ig_Semaphorin_classIII 99.2 7.3E-10 1.6E-14 58.0 9.5 76 22-107 7-89 (91)
99 KOG4194|consensus 99.2 1.3E-10 2.9E-15 77.5 7.3 82 22-108 623-705 (873)
100 cd05717 Ig1_Necl-1-3_like Firs 99.2 1.9E-09 4E-14 56.8 9.7 79 22-105 8-94 (95)
101 cd05727 Ig2_Contactin-2-like S 99.1 2.6E-10 5.5E-15 60.0 6.2 72 22-98 14-86 (96)
102 cd05759 Ig2_KIRREL3-like Secon 99.1 1.2E-09 2.6E-14 56.0 8.7 76 29-105 2-79 (82)
103 cd05885 Ig2_Necl-4 Second immu 99.1 1.1E-09 2.4E-14 55.8 8.0 67 29-98 2-69 (80)
104 PHA02826 IL-1 receptor-like pr 99.1 1.5E-09 3.4E-14 65.5 9.6 68 22-96 140-212 (227)
105 PF00047 ig: Immunoglobulin do 99.1 1E-09 2.2E-14 53.6 7.3 63 26-91 1-64 (64)
106 PHA02785 IL-beta-binding prote 99.0 1.5E-08 3.2E-13 64.4 11.2 79 22-100 231-320 (326)
107 cd05872 Ig_Sema4B_like Immunog 99.0 7.8E-09 1.7E-13 53.3 8.1 77 22-109 7-83 (85)
108 cd05714 Ig_CSPGs_LP Immunoglob 99.0 3.4E-08 7.4E-13 53.0 10.7 84 25-108 1-104 (106)
109 cd05845 Ig2_L1-CAM_like Second 99.0 1.2E-09 2.6E-14 57.4 4.9 69 22-98 14-85 (95)
110 cd05900 Ig_Aggrecan Immunoglob 98.9 7E-08 1.5E-12 52.3 10.5 84 25-108 1-110 (112)
111 cd05896 Ig1_IL1RAPL-1_like Fir 98.9 2.6E-08 5.7E-13 52.9 8.4 81 22-106 11-104 (104)
112 cd05751 Ig1_LILRB1_like First 98.9 2.4E-08 5.2E-13 52.2 8.1 64 22-94 12-75 (91)
113 KOG4221|consensus 98.9 1.4E-08 3.1E-13 72.1 8.8 78 22-106 248-325 (1381)
114 cd05877 Ig_LP_like Immunoglobu 98.9 1.1E-07 2.4E-12 51.0 10.5 84 25-108 1-104 (106)
115 cd05878 Ig_Aggrecan_like Immun 98.9 1.7E-07 3.6E-12 50.7 10.9 84 25-108 1-108 (110)
116 PHA02785 IL-beta-binding prote 98.9 2.1E-08 4.6E-13 63.7 7.9 76 22-107 37-117 (326)
117 cd05902 Ig_Neurocan Immunoglob 98.9 1.9E-07 4.1E-12 50.5 10.5 84 25-108 1-108 (110)
118 cd05897 Ig2_IL1R2_like Second 98.9 4.3E-08 9.2E-13 51.6 7.7 73 22-100 6-83 (95)
119 cd05713 Ig_MOG_like Immunoglob 98.8 1.8E-07 3.8E-12 49.6 9.9 36 71-106 64-99 (100)
120 cd05879 Ig_P0 Immunoglobulin ( 98.8 1.6E-07 3.6E-12 51.2 9.9 81 22-105 9-113 (116)
121 PF13927 Ig_3: Immunoglobulin 98.8 9.4E-08 2E-12 47.5 7.7 61 25-93 14-75 (75)
122 PHA02826 IL-1 receptor-like pr 98.8 5E-08 1.1E-12 59.1 7.6 85 22-106 33-132 (227)
123 cd05901 Ig_Versican Immunoglob 98.7 1.2E-06 2.5E-11 47.8 10.9 38 71-108 78-115 (117)
124 cd05883 Ig2_Necl-2 Second immu 98.7 1.2E-06 2.7E-11 44.8 10.0 77 29-107 2-80 (82)
125 cd05881 Ig1_Necl-2 First (N-te 98.7 1.5E-06 3.2E-11 45.8 10.4 68 22-93 8-83 (95)
126 cd04983 IgV_TCR_alpha_like Imm 98.7 4.9E-07 1.1E-11 48.6 8.8 72 22-96 9-94 (109)
127 cd07694 Ig2_CD4 Second immunog 98.7 6.7E-07 1.5E-11 46.0 8.7 75 22-109 10-86 (88)
128 cd05718 Ig1_PVR_like First imm 98.7 6.9E-07 1.5E-11 47.1 9.1 79 27-106 1-97 (98)
129 cd05761 Ig2_Necl-1-4_like Seco 98.6 8.5E-07 1.8E-11 45.4 8.3 69 29-98 2-71 (82)
130 cd00098 IgC Immunoglobulin Con 98.6 2.7E-07 5.9E-12 48.3 6.6 73 25-97 12-87 (95)
131 cd05774 Ig_CEACAM_D1 First imm 98.6 6.9E-07 1.5E-11 47.9 8.1 84 22-105 9-104 (105)
132 cd05888 Ig1_Nectin-4_like Frst 98.6 1.7E-06 3.6E-11 46.0 9.5 36 71-106 63-99 (100)
133 cd05775 Ig_SLAM-CD84_like_N N- 98.6 5.1E-07 1.1E-11 47.7 7.5 83 24-106 2-96 (97)
134 cd07705 Ig2_Necl-1 Second immu 98.6 1.5E-06 3.2E-11 44.7 8.7 68 29-97 2-71 (83)
135 cd05741 Ig_CEACAM_D1_like Firs 98.6 8.7E-07 1.9E-11 46.1 7.9 77 26-105 1-91 (92)
136 cd00099 IgV Immunoglobulin var 98.6 8.4E-07 1.8E-11 47.3 7.8 72 22-96 2-91 (105)
137 cd05886 Ig1_Nectin-1_like Firs 98.6 4.3E-06 9.4E-11 44.4 10.1 35 72-106 63-98 (99)
138 cd05711 Ig_FcalphaRI Immunoglo 98.6 1.4E-06 3.1E-11 45.8 8.0 65 22-92 11-75 (94)
139 cd05846 Ig1_MRC-OX-2_like Firs 98.6 2.8E-06 6E-11 44.9 9.0 81 26-106 1-96 (97)
140 cd05884 Ig2_Necl-3 Second immu 98.5 1.4E-06 3E-11 44.8 7.5 69 29-97 2-71 (83)
141 cd05899 IgV_TCR_beta Immunoglo 98.5 9.1E-07 2E-11 47.7 7.2 73 22-95 9-95 (110)
142 cd04980 IgV_L_kappa Immunoglob 98.5 9.7E-07 2.1E-11 47.3 6.6 73 22-94 11-93 (106)
143 cd05880 Ig_EVA1 Immunoglobulin 98.5 4.2E-06 9E-11 45.6 8.7 76 22-97 9-104 (115)
144 KOG4194|consensus 98.5 9.4E-07 2E-11 59.8 7.2 78 22-106 717-795 (873)
145 cd04984 IgV_L_lambda Immunoglo 98.5 2.3E-06 5E-11 45.2 7.4 72 23-94 3-85 (98)
146 PF07686 V-set: Immunoglobulin 98.5 5.7E-06 1.2E-10 44.3 9.1 85 22-106 12-114 (114)
147 cd00096 Ig Immunoglobulin doma 98.4 9.3E-06 2E-10 39.0 8.8 66 30-96 2-67 (74)
148 KOG4222|consensus 98.4 1.6E-06 3.4E-11 61.9 7.4 92 13-109 30-130 (1281)
149 cd05715 Ig_P0-like Immunoglobu 98.4 9.2E-06 2E-10 44.3 9.1 76 22-97 9-105 (116)
150 cd04982 IgV_TCR_gamma Immunogl 98.4 1.7E-06 3.7E-11 47.0 6.1 72 22-93 9-98 (116)
151 cd05887 Ig1_Nectin-3_like Firs 98.4 2E-05 4.4E-10 41.5 9.5 36 71-106 59-95 (96)
152 PF08205 C2-set_2: CD80-like C 98.4 6.7E-06 1.4E-10 42.6 7.5 73 26-98 14-87 (89)
153 cd05755 Ig2_ICAM-1_like Second 98.3 1.6E-05 3.4E-10 42.3 8.6 73 23-98 13-88 (100)
154 KOG4221|consensus 98.3 5.2E-06 1.1E-10 59.7 8.5 76 16-99 145-220 (1381)
155 PHA02987 Ig domain OX-2-like p 98.3 1.6E-05 3.4E-10 46.5 9.0 85 22-106 26-121 (189)
156 KOG4222|consensus 98.2 2.1E-06 4.5E-11 61.3 4.6 78 22-107 236-313 (1281)
157 cd05889 Ig1_DNAM-1_like First 98.2 6.4E-05 1.4E-09 39.7 8.5 34 71-104 59-93 (96)
158 cd05716 Ig_pIgR Immunoglobulin 98.2 5.5E-05 1.2E-09 39.8 8.3 71 22-95 3-87 (98)
159 cd05720 Ig_CD8_alpha Immunoglo 98.1 3E-05 6.6E-10 41.4 7.2 71 23-93 3-90 (104)
160 cd07700 IgV_CD8_beta Immunoglo 98.1 2.9E-05 6.3E-10 41.7 6.8 72 22-93 2-93 (107)
161 cd07703 Ig2_Nectin-2_like Seco 98.1 5.2E-05 1.1E-09 40.0 7.5 78 27-107 16-94 (95)
162 cd05719 Ig2_PVR_like Second im 98.1 6.1E-05 1.3E-09 39.7 7.7 78 26-106 15-93 (95)
163 smart00407 IGc1 Immunoglobulin 98.1 0.0001 2.2E-09 37.0 8.0 66 29-94 2-70 (75)
164 cd05772 IgC_SIRP Signal-regula 98.0 0.00025 5.5E-09 38.4 9.5 71 24-95 19-92 (111)
165 cd07698 IgC_MHC_I_alpha3 Class 98.0 0.00013 2.7E-09 38.2 8.0 68 26-96 14-84 (93)
166 cd07706 IgV_TCR_delta Immunogl 98.0 7.2E-05 1.6E-09 40.6 6.8 72 22-93 10-93 (116)
167 cd05771 IgC_Tapasin_R Tapasin- 98.0 0.0003 6.6E-09 39.4 9.3 72 25-96 52-132 (139)
168 PHA03376 BARF1; Provisional 97.9 0.00041 8.8E-09 40.9 9.2 76 22-98 22-113 (221)
169 cd05712 Ig_Siglec_N Immunoglob 97.9 0.00018 3.9E-09 39.4 7.6 73 22-94 10-102 (119)
170 cd05766 IgC_MHC_II_beta Class 97.9 0.00044 9.5E-09 36.3 8.2 69 24-95 12-83 (94)
171 cd05770 IgC_beta2m Class I maj 97.8 0.00053 1.1E-08 36.0 8.2 66 25-93 14-81 (93)
172 cd07699 IgC_L Immunoglobulin C 97.8 0.00016 3.4E-09 38.5 6.1 71 25-95 16-89 (100)
173 cd05768 IgC_CH4 CH4 domain (fo 97.8 0.00012 2.6E-09 39.1 5.3 70 25-94 15-90 (102)
174 cd05847 IgC_CH2_IgE CH2 domain 97.7 0.00053 1.2E-08 36.0 7.3 74 25-98 13-89 (94)
175 cd04981 IgV_H Immunoglobulin ( 97.7 0.0012 2.7E-08 36.0 8.3 72 22-93 8-97 (117)
176 PF07654 C1-set: Immunoglobuli 97.6 0.00063 1.4E-08 34.7 6.4 68 25-95 7-77 (83)
177 cd05767 IgC_MHC_II_alpha Class 97.6 0.0016 3.5E-08 34.2 7.9 67 25-94 14-83 (94)
178 cd05771 IgC_Tapasin_R Tapasin- 97.6 0.00018 3.9E-09 40.4 4.6 35 73-107 2-36 (139)
179 smart00406 IGv Immunoglobulin 97.5 0.00098 2.1E-08 33.4 6.1 20 71-90 61-80 (81)
180 cd07692 Ig_CD3_epsilon Immunog 97.5 0.00079 1.7E-08 32.8 5.1 55 22-95 3-57 (65)
181 cd07704 Ig2_Nectin-3-4_like Se 97.4 0.0022 4.8E-08 33.9 7.0 73 22-97 12-86 (97)
182 cd07696 IgC_CH3 CH3 domain (th 97.4 0.0028 6.2E-08 33.4 7.1 72 24-95 12-86 (96)
183 cd07697 IgC_TCR_gamma T cell r 97.4 0.0036 7.7E-08 33.1 7.3 66 25-93 15-83 (96)
184 cd05769 IgC_TCR_beta T cell re 97.3 0.0039 8.5E-08 34.0 7.0 78 25-102 17-99 (115)
185 PHA02633 hypothetical protein; 97.2 0.0029 6.2E-08 30.5 5.2 35 73-107 19-53 (63)
186 cd04985 IgC_CH1 CH1 domain (fi 97.2 0.0058 1.3E-07 32.2 6.8 70 25-95 15-87 (95)
187 cd07691 Ig_CD3_gamma_delta Imm 97.2 0.0043 9.3E-08 30.5 5.7 50 25-93 5-54 (69)
188 cd04986 IgC_CH2 CH2 domain (se 96.6 0.013 2.8E-07 31.1 5.1 68 25-95 18-89 (99)
189 PF08204 V-set_CD47: CD47 immu 96.0 0.02 4.4E-07 31.9 4.1 83 24-107 25-120 (130)
190 KOG3515|consensus 95.9 0.0082 1.8E-07 42.4 2.7 66 22-97 18-84 (741)
191 cd05721 IgV_CTLA-4 Immunoglobu 95.7 0.14 3.1E-06 28.0 8.1 71 22-93 9-95 (115)
192 cd07689 Ig2_VCAM-1 Second immu 95.6 0.15 3.2E-06 27.2 7.1 71 21-94 10-85 (99)
193 KOG1480|consensus 95.6 0.0054 1.2E-07 43.2 1.0 70 22-99 140-210 (909)
194 PF06328 Lep_receptor_Ig: Ig-l 95.5 0.15 3.2E-06 26.6 6.3 64 21-91 13-81 (89)
195 PF11465 Receptor_2B4: Natural 95.2 0.22 4.8E-06 26.8 6.5 36 72-108 71-106 (108)
196 KOG4597|consensus 95.1 0.059 1.3E-06 36.3 4.4 80 23-107 208-292 (560)
197 PHA03042 CD47-like protein; Pr 95.0 0.49 1.1E-05 29.8 8.3 71 24-106 29-104 (286)
198 PF07354 Sp38: Zona-pellucida- 95.0 0.14 3.1E-06 31.9 5.7 49 39-95 11-60 (271)
199 cd05890 Ig2_Nectin-1_like Seco 94.9 0.23 5E-06 26.2 5.6 72 29-105 23-97 (98)
200 PF05790 C2-set: Immunoglobuli 94.7 0.27 5.9E-06 25.1 8.3 35 73-107 44-79 (80)
201 PHA03270 envelope glycoprotein 93.9 1.2 2.6E-05 30.0 8.4 85 8-92 216-305 (466)
202 KOG3515|consensus 93.4 0.4 8.6E-06 34.4 6.0 71 24-94 110-185 (741)
203 PHA02865 MHC-like TNF binding 91.0 1.6 3.4E-05 28.6 6.0 21 28-48 216-238 (338)
204 PHA03273 envelope glycoprotein 89.8 4.8 0.0001 27.6 8.4 46 8-53 232-280 (486)
205 PHA02982 hypothetical protein; 89.5 3.4 7.3E-05 25.4 7.8 74 22-97 35-125 (251)
206 PHA03269 envelope glycoprotein 88.9 5.2 0.00011 27.7 7.3 47 8-54 324-373 (566)
207 PHA03271 envelope glycoprotein 85.4 9.4 0.0002 26.0 7.4 35 21-55 255-292 (490)
208 PF06832 BiPBP_C: Penicillin-B 83.5 4.5 9.7E-05 20.8 8.4 56 28-100 31-86 (89)
209 PHA02914 Immunoglobulin-like d 81.8 8.9 0.00019 26.0 5.7 76 22-97 275-371 (500)
210 PHA03052 Hypothetical protein; 81.0 5.2 0.00011 19.8 4.0 32 21-52 7-41 (69)
211 PHA03376 BARF1; Provisional 74.7 3.2 6.8E-05 25.1 2.1 24 26-49 139-162 (221)
212 PHA03189 UL14 tegument protein 64.7 37 0.00081 22.3 9.2 28 73-101 135-162 (348)
213 PHA03112 IL-18 binding protein 61.9 28 0.00061 19.9 4.3 79 22-100 34-124 (141)
214 PF01688 Herpes_gI: Alphaherpe 60.1 33 0.00072 20.2 4.6 36 73-108 125-160 (161)
215 PF10430 Ig_Tie2_1: Tie-2 Ig-l 59.0 25 0.00055 18.4 9.0 34 7-47 3-37 (96)
216 PF15096 G6B: G6B family 56.0 9.9 0.00021 22.8 1.7 17 23-39 8-24 (224)
217 KOG1026|consensus 55.6 8 0.00017 28.4 1.5 71 22-107 203-273 (774)
218 PHA02914 Immunoglobulin-like d 53.6 71 0.0015 22.0 9.6 36 72-107 81-117 (500)
219 COG5475 Uncharacterized small 48.3 31 0.00068 16.3 2.7 16 85-100 29-44 (60)
220 PHA03291 envelope glycoprotein 45.1 95 0.0021 21.0 4.9 37 72-108 129-165 (401)
221 PHA03283 envelope glycoprotein 42.7 97 0.0021 22.1 4.9 35 72-106 134-168 (542)
222 PF02440 Adeno_E3_CR1: Adenovi 41.8 45 0.00097 16.2 3.1 21 23-47 2-22 (63)
223 PHA03292 envelope glycoprotein 41.2 1.1E+02 0.0025 20.8 5.1 38 72-109 128-165 (413)
224 PHA03290 envelope glycoprotein 39.1 1.2E+02 0.0026 20.3 5.2 37 72-108 129-165 (357)
225 PHA03273 envelope glycoprotein 38.2 1.4E+02 0.003 21.0 5.0 37 72-108 198-234 (486)
226 PF13220 DUF4028: Protein of u 37.4 33 0.00072 16.0 1.6 16 82-97 8-23 (65)
227 PHA03289 envelope glycoprotein 36.2 1.3E+02 0.0029 20.0 5.5 38 72-109 122-159 (352)
228 PHA03240 envelope glycoprotein 33.9 40 0.00088 20.9 1.9 27 71-97 104-130 (258)
229 PHA03282 envelope glycoprotein 29.8 1.7E+02 0.0037 20.8 4.4 22 71-92 123-144 (540)
230 PF11049 KSHV_K1: Glycoprotein 29.1 83 0.0018 15.6 2.9 21 31-53 3-23 (71)
231 PF03921 ICAM_N: Intercellular 25.6 1.2E+02 0.0025 16.0 9.1 72 22-109 14-86 (91)
232 KOG0613|consensus 23.9 67 0.0014 25.4 2.0 75 22-99 345-420 (1205)
233 PHA03270 envelope glycoprotein 23.3 2.7E+02 0.0059 19.6 5.2 35 74-108 184-218 (466)
234 PHA03286 envelope glycoprotein 20.5 2.9E+02 0.0063 19.6 4.2 30 72-101 127-156 (492)
No 1
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.77 E-value=3.2e-17 Score=87.29 Aligned_cols=87 Identities=21% Similarity=0.319 Sum_probs=67.2
Q ss_pred eeecCCeEEEEeEEcc-cCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeE
Q psy9145 22 LSVLGHKIVFICMAKG-KPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTR 100 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~-~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~ 100 (111)
.+.+|+.+.|.|.+.| .|+|.+.|+++|..+...................+.|.|..++..|+|.|.|.|.|..|....
T Consensus 14 ~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~ 93 (101)
T cd04975 14 FVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASKSL 93 (101)
T ss_pred EEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccEEE
Confidence 5679999999999999 889999999999888643322111100011122467999999999999999999999999999
Q ss_pred EEEEEEEE
Q psy9145 101 TFKTDFSI 108 (111)
Q Consensus 101 ~~~l~v~~ 108 (111)
.+.|.|.+
T Consensus 94 t~~L~V~v 101 (101)
T cd04975 94 TFELYVNV 101 (101)
T ss_pred EEEEEEEC
Confidence 99888753
No 2
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.76 E-value=1.6e-17 Score=83.91 Aligned_cols=74 Identities=27% Similarity=0.485 Sum_probs=61.1
Q ss_pred cCCeEEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEEEEE
Q psy9145 25 LGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKT 104 (111)
Q Consensus 25 ~g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l 104 (111)
+|+.+.|.|.+.|.|.|.+.|++++..+....+.... . ...|.|..++..|.|.|.|.+.|..|.....+.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~----~----~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L 72 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVL----S----SGTLRISRVALHDQGQYECQAVNIVGSQRTVAQL 72 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEc----c----CCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEE
Confidence 5899999999999999999999999877543322211 1 2379999999999999999999999999988877
Q ss_pred EE
Q psy9145 105 DF 106 (111)
Q Consensus 105 ~v 106 (111)
.|
T Consensus 73 ~V 74 (74)
T cd05745 73 TV 74 (74)
T ss_pred eC
Confidence 64
No 3
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.76 E-value=5e-17 Score=85.36 Aligned_cols=81 Identities=20% Similarity=0.359 Sum_probs=65.5
Q ss_pred eeecCCeEEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEE
Q psy9145 22 LSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRT 101 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 101 (111)
.+.+|+.+.|.|.+.|.|.|.+.|++++..+....+..... ... ....|.|..++..|+|.|.|.+.|..|.....
T Consensus 12 ~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~---~~~-~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 87 (92)
T cd05737 12 TIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKV---EQG-KYASLTIKGVSSEDSGKYGIVVKNKYGGETVD 87 (92)
T ss_pred EEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEE---cCC-CEEEEEEccCChhhCEEEEEEEEECCCcceEE
Confidence 66899999999999999999999999998876544433221 111 12479999999999999999999999999988
Q ss_pred EEEEE
Q psy9145 102 FKTDF 106 (111)
Q Consensus 102 ~~l~v 106 (111)
+.|.|
T Consensus 88 ~~v~v 92 (92)
T cd05737 88 VTVSV 92 (92)
T ss_pred EEEeC
Confidence 87764
No 4
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.76 E-value=1.1e-16 Score=84.97 Aligned_cols=81 Identities=16% Similarity=0.236 Sum_probs=67.7
Q ss_pred eeecCCeEEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEE
Q psy9145 22 LSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRT 101 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 101 (111)
.+..|+.+.|.|.+.|.|+|.+.|++++..+....+.... .....+.|.|..+.+.|.|.|.|.+.|..|...++
T Consensus 11 ~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~-----~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~ 85 (98)
T cd05762 11 KVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIE-----NTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQ 85 (98)
T ss_pred EEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEE-----ecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEE
Confidence 5689999999999999999999999999988654443322 11123579999999999999999999999999999
Q ss_pred EEEEEE
Q psy9145 102 FKTDFS 107 (111)
Q Consensus 102 ~~l~v~ 107 (111)
+.|.|.
T Consensus 86 ~~l~V~ 91 (98)
T cd05762 86 VNLTVV 91 (98)
T ss_pred EEEEEe
Confidence 988875
No 5
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.75 E-value=1.1e-16 Score=83.01 Aligned_cols=80 Identities=21% Similarity=0.324 Sum_probs=64.9
Q ss_pred eeecCCeEEEEeEEcccCCCeEEEEECCEEecccc-ceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeE
Q psy9145 22 LSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHM-YVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTR 100 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~ 100 (111)
.+..|+.+.|.|.+.|.|.|.+.|++++..+.... +... ......+.|.|..+.+.|+|.|.|.+.|..|....
T Consensus 6 ~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~-----~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~ 80 (86)
T cd05894 6 VVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRV-----ESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHA 80 (86)
T ss_pred EEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEE-----EEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEE
Confidence 56799999999999999999999999998875432 2222 11112357999999999999999999999999998
Q ss_pred EEEEEE
Q psy9145 101 TFKTDF 106 (111)
Q Consensus 101 ~~~l~v 106 (111)
.+.|.|
T Consensus 81 ~~~l~V 86 (86)
T cd05894 81 SLFVKV 86 (86)
T ss_pred EEEEEC
Confidence 887764
No 6
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.74 E-value=6.2e-17 Score=81.51 Aligned_cols=73 Identities=25% Similarity=0.492 Sum_probs=60.3
Q ss_pred CCeEEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEEEEEE
Q psy9145 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTD 105 (111)
Q Consensus 26 g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~ 105 (111)
|+.+.|.|.+.|.|.|.+.|++++..+....+.... . ...|.|.+++..|.|.|.|.+.|..|....+..|.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~----~----~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 72 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIW----D----DGSLEILNITKLDEGSYTCFAENNRGKANSTGVLS 72 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEc----C----CCEEEECcCChhHCEEEEEEEECCCCceeEEEEEE
Confidence 678999999999999999999998776544333221 1 23799999999999999999999999999988876
Q ss_pred E
Q psy9145 106 F 106 (111)
Q Consensus 106 v 106 (111)
|
T Consensus 73 ~ 73 (73)
T cd05852 73 V 73 (73)
T ss_pred C
Confidence 4
No 7
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.73 E-value=1.3e-16 Score=83.10 Aligned_cols=76 Identities=25% Similarity=0.425 Sum_probs=62.2
Q ss_pred eeecCCeEEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEE
Q psy9145 22 LSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRT 101 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 101 (111)
.+.+|+.+.|.|.+.|.|.|.+.|++++..+....+... . ...|.|.+++..|.|.|.|.+.|..|.....
T Consensus 12 ~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~-----~----~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~ 82 (88)
T cd05851 12 YALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISM-----S----GAVLKIFNIQPEDEGTYECEAENIKGKDKHQ 82 (88)
T ss_pred EEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEec-----C----CCEEEECcCChhhCEEEEEEEEcCCCceEEE
Confidence 567999999999999999999999998865543222111 1 1368999999999999999999999999988
Q ss_pred EEEEE
Q psy9145 102 FKTDF 106 (111)
Q Consensus 102 ~~l~v 106 (111)
..|.|
T Consensus 83 ~~l~V 87 (88)
T cd05851 83 ARVYV 87 (88)
T ss_pred EEEEE
Confidence 88766
No 8
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.73 E-value=4.7e-16 Score=81.01 Aligned_cols=81 Identities=23% Similarity=0.365 Sum_probs=63.9
Q ss_pred CCeEEEEeEEcccCCCeEEEEECCEEecccc-ceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEEEEE
Q psy9145 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHM-YVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKT 104 (111)
Q Consensus 26 g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l 104 (111)
|+.+.|.|.+.|.|+|.+.|++++..+.... ++..... .......+.|.|..++..|.|.|.|.|.|..|.....+.|
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~-~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L 79 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTK-EVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQL 79 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEe-cCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEE
Confidence 7889999999999999999999998775432 2222211 1223334689999999999999999999999999999988
Q ss_pred EEE
Q psy9145 105 DFS 107 (111)
Q Consensus 105 ~v~ 107 (111)
.|.
T Consensus 80 ~V~ 82 (88)
T cd05735 80 TVQ 82 (88)
T ss_pred EEe
Confidence 875
No 9
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.73 E-value=1.6e-16 Score=84.64 Aligned_cols=86 Identities=24% Similarity=0.360 Sum_probs=66.7
Q ss_pred eeecCCeEEEEeEEcccCCCeEEEEECCEEeccccceeeEEe-EecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeE
Q psy9145 22 LSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEW-HYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTR 100 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~ 100 (111)
.+..|+.+.|.|.+.|.|.|.+.|+++|..+........... ........+.|.|..++..|+|.|.|.|.|..|....
T Consensus 14 ~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~ 93 (101)
T cd05859 14 FANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVKSY 93 (101)
T ss_pred EEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceEEE
Confidence 567899999999999999999999999998765432211100 0011122357999999999999999999999999999
Q ss_pred EEEEEEE
Q psy9145 101 TFKTDFS 107 (111)
Q Consensus 101 ~~~l~v~ 107 (111)
++.|.|.
T Consensus 94 t~~l~V~ 100 (101)
T cd05859 94 TFALQIQ 100 (101)
T ss_pred EEEEEEE
Confidence 9888875
No 10
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.73 E-value=8.5e-17 Score=79.52 Aligned_cols=67 Identities=18% Similarity=0.315 Sum_probs=56.3
Q ss_pred EEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEEEEEEEEE
Q psy9145 29 IVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFSI 108 (111)
Q Consensus 29 ~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~ 108 (111)
+.|.|.+.|.|.|.+.|+++|+.+.... ....|.|..+..+|+|.|.|.+.|..|....++.+.+.+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~-------------~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~v 67 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGKH-------------SQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELIV 67 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECcccC-------------CcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEEC
Confidence 3689999999999999999998875211 024799999999999999999999999888888777653
No 11
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.73 E-value=2.5e-16 Score=80.16 Aligned_cols=76 Identities=25% Similarity=0.529 Sum_probs=58.5
Q ss_pred EEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEEEEEEE
Q psy9145 31 FICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDF 106 (111)
Q Consensus 31 l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v 106 (111)
+.|.+.|.|.|.+.|+++|..+....+..............+.|.|..+...|+|.|.|.|.|..|....++.+..
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~f 78 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAHF 78 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEeec
Confidence 5788899999999999999988755433221111222223457999999999999999999999999998887754
No 12
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.72 E-value=4.6e-16 Score=78.96 Aligned_cols=74 Identities=20% Similarity=0.341 Sum_probs=60.2
Q ss_pred CCeEEEEeEEcccCCCeEEEEECCEEeccccce-eeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEEEEE
Q psy9145 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYV-NLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKT 104 (111)
Q Consensus 26 g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l 104 (111)
|+.+.|.|.+.|.|.|.+.|+++|..+...... ... .. ...|.|..++..|+|.|.|.+.|..|.......|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~---~~----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 73 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRH---VS----SGALILTDVQPSDTAVYQCEARNRHGNLLANAHV 73 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEE---ee----CCEEEECCCChhhCEEEEEEEECCCCeEEEEEEE
Confidence 688999999999999999999999877543211 111 11 2479999999999999999999999999888887
Q ss_pred EE
Q psy9145 105 DF 106 (111)
Q Consensus 105 ~v 106 (111)
.|
T Consensus 74 ~V 75 (76)
T cd05867 74 HV 75 (76)
T ss_pred EE
Confidence 76
No 13
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.71 E-value=3.8e-16 Score=78.96 Aligned_cols=74 Identities=22% Similarity=0.293 Sum_probs=58.1
Q ss_pred EEEEeEEcccCCCeEEEEECCEEeccc-cceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEEEEEEE
Q psy9145 29 IVFICMAKGKPRPHITWFKDGVELYAH-MYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDF 106 (111)
Q Consensus 29 ~~l~C~~~~~p~p~i~w~~~g~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v 106 (111)
+.|.|.+.|.|.|.+.|++++..+... .++... .......+|.|..++..|.|.|.|.+.|..|.......|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~----~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLY----QDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEE----EcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 468999999999999999999887632 232221 11111247999999999999999999999999999888764
No 14
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.71 E-value=6e-16 Score=81.66 Aligned_cols=80 Identities=25% Similarity=0.443 Sum_probs=65.0
Q ss_pred eeecCCeEEEEeEEcccCCCeEEEEECCEEeccc-cceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeE
Q psy9145 22 LSVLGHKIVFICMAKGKPRPHITWFKDGVELYAH-MYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTR 100 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~ 100 (111)
.+..|+.+.|.|.+.|.|.|.+.|+++|..+... .+... ... .+.|.|..++..|.|.|.|.+.|..|....
T Consensus 14 ~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~-----~~~--~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 86 (95)
T cd05730 14 TANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSF-----NED--GSEMTILDVDKLDEAEYTCIAENKAGEQEA 86 (95)
T ss_pred EEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEE-----eCC--CCEEEECCCChhhCEEEEEEEEcCCCeEEE
Confidence 5679999999999999999999999999877543 22111 111 236999999999999999999999999999
Q ss_pred EEEEEEEE
Q psy9145 101 TFKTDFSI 108 (111)
Q Consensus 101 ~~~l~v~~ 108 (111)
.+.|.|..
T Consensus 87 ~~~L~V~~ 94 (95)
T cd05730 87 EIHLKVFA 94 (95)
T ss_pred EEEEEEEe
Confidence 99888753
No 15
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.71 E-value=7.2e-16 Score=80.93 Aligned_cols=81 Identities=20% Similarity=0.392 Sum_probs=64.9
Q ss_pred eeecCCeEEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEE
Q psy9145 22 LSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRT 101 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 101 (111)
.+.+|+.+.|.|.+.+.|.|.+.|++++..+....++.... .... ...|.|..++.+|+|.|.|.+.|..|....+
T Consensus 12 ~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~---~~~~-~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 87 (92)
T cd05891 12 TIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKL---EQGK-YASLTIKGVTSEDSGKYSINVKNKYGGETVD 87 (92)
T ss_pred EEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEE---cCCC-EEEEEECCCChhhCEEEEEEEEeCCCceeeE
Confidence 66899999999999999999999999988775543332211 1111 2469999999999999999999999999998
Q ss_pred EEEEE
Q psy9145 102 FKTDF 106 (111)
Q Consensus 102 ~~l~v 106 (111)
+.|.|
T Consensus 88 ~~v~~ 92 (92)
T cd05891 88 VTVSV 92 (92)
T ss_pred EEEEC
Confidence 88764
No 16
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.71 E-value=5.6e-16 Score=82.08 Aligned_cols=84 Identities=23% Similarity=0.313 Sum_probs=61.7
Q ss_pred eecCCeEEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEEE
Q psy9145 23 SVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTF 102 (111)
Q Consensus 23 ~~~g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~ 102 (111)
...|+.+.|.|.+.|.|.|.+.|++++..+...................+.|.|..++..|.|.|.|.+.|..|....++
T Consensus 14 ~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~ 93 (97)
T cd05869 14 MELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQSM 93 (97)
T ss_pred EEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeEEE
Confidence 34589999999999999999999998766543211000000011112235799999999999999999999999999988
Q ss_pred EEEE
Q psy9145 103 KTDF 106 (111)
Q Consensus 103 ~l~v 106 (111)
.|.|
T Consensus 94 ~l~v 97 (97)
T cd05869 94 YLEV 97 (97)
T ss_pred EEEC
Confidence 8765
No 17
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.71 E-value=6e-16 Score=78.12 Aligned_cols=73 Identities=25% Similarity=0.365 Sum_probs=58.9
Q ss_pred EEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEEEEEEE
Q psy9145 29 IVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDF 106 (111)
Q Consensus 29 ~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v 106 (111)
+.|.|.+.|.|.|.+.|+++|..+....+.... .......|.|..+...|+|.|.|.+.|..|....++.|.|
T Consensus 2 ~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~-----~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 2 VRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIE-----TTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred EEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEE-----ECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 678999999999999999999887544333321 1112357999999999999999999999999998888764
No 18
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.71 E-value=9.7e-16 Score=79.26 Aligned_cols=81 Identities=22% Similarity=0.447 Sum_probs=63.0
Q ss_pred eeecCCeEEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEE
Q psy9145 22 LSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRT 101 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 101 (111)
.+..|+.+.|.|.+.|.|.|.+.|+++|..+.......... ... ....|.|..+...|.|.|.|.+.|..|.....
T Consensus 5 ~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~--~~~--~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~ 80 (85)
T cd05857 5 AVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYK--VRN--QHWSLIMESVVPSDKGNYTCVVENEYGSINHT 80 (85)
T ss_pred EcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeE--EeC--CceEEEEccCCcccCEEEEEEEEeCCCEEEEE
Confidence 35689999999999999999999999998876433221110 111 12368899999999999999999999999998
Q ss_pred EEEEE
Q psy9145 102 FKTDF 106 (111)
Q Consensus 102 ~~l~v 106 (111)
+.|.|
T Consensus 81 ~~l~v 85 (85)
T cd05857 81 YHLDV 85 (85)
T ss_pred EEEEC
Confidence 88764
No 19
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.71 E-value=4.3e-16 Score=80.65 Aligned_cols=76 Identities=24% Similarity=0.495 Sum_probs=63.4
Q ss_pred eeecCCeEEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEE
Q psy9145 22 LSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRT 101 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 101 (111)
.+..|+.+.|.|.+.|.|.|.+.|++++..+....+... . ...|.|..++..|.|.|.|.+.|..|....+
T Consensus 10 ~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~-----~----~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~ 80 (85)
T cd05728 10 EADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEV-----E----AGDLRITKLSLSDSGMYQCVAENKHGTIYAS 80 (85)
T ss_pred EEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEE-----e----CCEEEEeeCCHHHCEEEEEEEECCCCeEEEE
Confidence 567999999999999999999999999987754433222 1 1368899999999999999999999999888
Q ss_pred EEEEE
Q psy9145 102 FKTDF 106 (111)
Q Consensus 102 ~~l~v 106 (111)
+.|.|
T Consensus 81 ~~l~V 85 (85)
T cd05728 81 AELAV 85 (85)
T ss_pred EEEEC
Confidence 87764
No 20
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.71 E-value=6.6e-16 Score=81.59 Aligned_cols=85 Identities=22% Similarity=0.291 Sum_probs=62.9
Q ss_pred eeecCCeEEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEE
Q psy9145 22 LSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRT 101 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 101 (111)
.+.+|+.+.|.|.+.|.|.|.+.|++++..+...................+.|.|..++..|.|.|.|.+.|..|....+
T Consensus 12 ~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s 91 (96)
T cd05732 12 TAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQS 91 (96)
T ss_pred eEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcEEE
Confidence 56799999999999999999999999875543221100001111112223579999999999999999999999999888
Q ss_pred EEEEE
Q psy9145 102 FKTDF 106 (111)
Q Consensus 102 ~~l~v 106 (111)
+.|.|
T Consensus 92 ~~l~v 96 (96)
T cd05732 92 MYLEV 96 (96)
T ss_pred EEEeC
Confidence 87764
No 21
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.71 E-value=3e-16 Score=79.02 Aligned_cols=73 Identities=26% Similarity=0.510 Sum_probs=60.5
Q ss_pred CCeEEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEEEEEE
Q psy9145 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTD 105 (111)
Q Consensus 26 g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~ 105 (111)
|+.+.|.|.+.|.|.|.+.|++++..+....+.... . ...|.|.+++..|.|.|.|.+.|..|....++.|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~-----~---~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 72 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIW-----P---DGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLS 72 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEEC-----C---CCeEEEccCChhHCEEEEEEEECCCCceEEEEEEE
Confidence 688999999999999999999999877544433321 1 13699999999999999999999999999988876
Q ss_pred E
Q psy9145 106 F 106 (111)
Q Consensus 106 v 106 (111)
|
T Consensus 73 V 73 (73)
T cd04969 73 V 73 (73)
T ss_pred C
Confidence 4
No 22
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.71 E-value=5.2e-16 Score=77.78 Aligned_cols=71 Identities=23% Similarity=0.518 Sum_probs=56.9
Q ss_pred eEEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEEEEEEE
Q psy9145 28 KIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDF 106 (111)
Q Consensus 28 ~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v 106 (111)
.+.|.|.+.|.|.|.+.|++++..+....+..... ...+.+..++..|.|.|.|.|.|..|....++.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~--------~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVK--------EHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEe--------cCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 36899999999999999999998775544333211 124777799999999999999999999999888764
No 23
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.70 E-value=8.6e-16 Score=80.33 Aligned_cols=80 Identities=18% Similarity=0.279 Sum_probs=63.6
Q ss_pred eeecCCeEEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEE
Q psy9145 22 LSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRT 101 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 101 (111)
.+..|+.+.|.|.+.|.|.|.+.|++++..+........ ........|.|..++..|.|.|.|.+.|..|....+
T Consensus 11 ~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~-----~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~ 85 (90)
T cd04972 11 VVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTL-----ETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVS 85 (90)
T ss_pred EEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEE-----EecCCEEEEEEecCCcccCEEEEEEEECCCCceeEE
Confidence 467999999999999999999999999987643322111 111123579999999999999999999999999988
Q ss_pred EEEEE
Q psy9145 102 FKTDF 106 (111)
Q Consensus 102 ~~l~v 106 (111)
+.|.|
T Consensus 86 ~~L~v 90 (90)
T cd04972 86 VQVTV 90 (90)
T ss_pred EEEeC
Confidence 87754
No 24
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.70 E-value=1.7e-15 Score=79.52 Aligned_cols=78 Identities=23% Similarity=0.423 Sum_probs=63.5
Q ss_pred eeecCCeEEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEE
Q psy9145 22 LSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRT 101 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 101 (111)
.+.+|+.+.|.|.+.|.|.|.+.|++++..+....+..... ....+.|.|..++..|.|.|.|.+.|..|.....
T Consensus 14 ~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~-----~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~ 88 (92)
T cd05747 14 TVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITS-----TEYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQ 88 (92)
T ss_pred EEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEE-----cCCeeEEEECCCCcccCEeEEEEEEcCCCCEeEE
Confidence 56899999999999999999999999998775544333221 1113579999999999999999999999998887
Q ss_pred EEE
Q psy9145 102 FKT 104 (111)
Q Consensus 102 ~~l 104 (111)
+.|
T Consensus 89 ~~l 91 (92)
T cd05747 89 FTL 91 (92)
T ss_pred EEe
Confidence 765
No 25
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.70 E-value=3.4e-16 Score=78.46 Aligned_cols=71 Identities=20% Similarity=0.320 Sum_probs=57.8
Q ss_pred EEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEEEEEEEEE
Q psy9145 29 IVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFSI 108 (111)
Q Consensus 29 ~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~ 108 (111)
+.|.|.+.|.|.|.+.|+++|..+....+.. .. ...|.|..+...|+|.|.|.+.|..|....++.+.|.+
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~-----~~----~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~v 71 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTK-----KS----GHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLVV 71 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEE-----cC----CCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEEC
Confidence 3689999999999999999998876542211 11 24799999999999999999999999988888877653
No 26
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.69 E-value=1.8e-15 Score=76.79 Aligned_cols=75 Identities=23% Similarity=0.440 Sum_probs=59.6
Q ss_pred CCeEEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEEEEEE
Q psy9145 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTD 105 (111)
Q Consensus 26 g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~ 105 (111)
|+.+.|.|.+.|.|.|.+.|+++|+.+......... .... ..+.+..++..|.|.|.|.+.|..|....++.|.
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~--~~~~----~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 74 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSR--KVDG----DTIIFSKVQERSSAVYQCNASNEYGYLLANAFVN 74 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceE--EecC----CEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEE
Confidence 678999999999999999999999877532111110 1111 3688899999999999999999999999999887
Q ss_pred E
Q psy9145 106 F 106 (111)
Q Consensus 106 v 106 (111)
|
T Consensus 75 v 75 (76)
T cd05868 75 V 75 (76)
T ss_pred e
Confidence 6
No 27
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.68 E-value=2.3e-15 Score=76.23 Aligned_cols=75 Identities=21% Similarity=0.314 Sum_probs=60.3
Q ss_pred CCeEEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEEEEEE
Q psy9145 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTD 105 (111)
Q Consensus 26 g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~ 105 (111)
|+.+.|.|.+.|.|.|.+.|++++..+....... . .... ...|.|..++..|.|.|.|.+.|..|.....+.|.
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~-~-~~~~----~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 74 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDP-R-RRVD----GGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVH 74 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcc-e-EEcc----CCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEE
Confidence 7889999999999999999999998775433210 0 0011 24799999999999999999999999999888877
Q ss_pred E
Q psy9145 106 F 106 (111)
Q Consensus 106 v 106 (111)
|
T Consensus 75 V 75 (76)
T cd04978 75 V 75 (76)
T ss_pred E
Confidence 6
No 28
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.68 E-value=1.9e-15 Score=76.47 Aligned_cols=74 Identities=24% Similarity=0.278 Sum_probs=57.7
Q ss_pred EEEEeEEcccCCCeEEEEECCEEeccc-cceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEEEEEEE
Q psy9145 29 IVFICMAKGKPRPHITWFKDGVELYAH-MYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDF 106 (111)
Q Consensus 29 ~~l~C~~~~~p~p~i~w~~~g~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v 106 (111)
+.|.|.+.|.|.|.+.|++++..+... .+.... ........|.|..++..|.|.|.|.+.|..|....+..|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~----~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLY----QDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEE----EcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 468999999999999999999887643 222221 11112246999999999999999999999999998887764
No 29
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.68 E-value=3.1e-15 Score=77.87 Aligned_cols=76 Identities=25% Similarity=0.434 Sum_probs=61.9
Q ss_pred eeecCCeEEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEE
Q psy9145 22 LSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRT 101 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 101 (111)
.+.+|+.+.|.|.+.|.|.|.+.|++++.......... . ....|.|..++.+|+|.|.|.+.|..|....+
T Consensus 12 ~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~-----~----~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~ 82 (88)
T cd04968 12 YALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS-----M----SGAVLKIPNIQFEDEGTYECEAENIKGKDTHQ 82 (88)
T ss_pred EEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE-----E----eCCEEEECCCCcccCEEEEEEEEECCCcEEEE
Confidence 46799999999999999999999999876544332211 0 12479999999999999999999999999888
Q ss_pred EEEEE
Q psy9145 102 FKTDF 106 (111)
Q Consensus 102 ~~l~v 106 (111)
..|.|
T Consensus 83 ~~l~V 87 (88)
T cd04968 83 GRIYV 87 (88)
T ss_pred EEEEE
Confidence 88776
No 30
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.68 E-value=5.5e-16 Score=77.35 Aligned_cols=68 Identities=19% Similarity=0.305 Sum_probs=55.3
Q ss_pred EEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEEEEEEEE
Q psy9145 30 VFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFS 107 (111)
Q Consensus 30 ~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~ 107 (111)
.|.|.+.|.|.|.+.|+++|+.+...... .. ...|.|..+...|+|.|.|.+.|..|.......+.+.
T Consensus 2 ~~~c~v~G~P~P~v~W~k~g~~l~~~~~~-------~~---~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 2 KIPVKYYGYPPPEVKWYKNGQLIVLNHTF-------KR---GVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred EEEeEEEEeCCCEEEEEECCEECCCCCEE-------cc---CCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence 58899999999999999999887643221 11 1369999999999999999999999988777766654
No 31
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.68 E-value=1.6e-15 Score=76.70 Aligned_cols=74 Identities=28% Similarity=0.385 Sum_probs=57.6
Q ss_pred EEEEeEEcccCCCeEEEEECCEEeccc-cceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEEEEEEE
Q psy9145 29 IVFICMAKGKPRPHITWFKDGVELYAH-MYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDF 106 (111)
Q Consensus 29 ~~l~C~~~~~p~p~i~w~~~g~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v 106 (111)
+.|.|.+.|.|.|.+.|++++..+... .+..... .......|.|..++..|.|.|.|.|.|..|..+.+..|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~----~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQ----DNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEE----cCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 468999999999999999999877542 2222211 1111236899999999999999999999999999888764
No 32
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.68 E-value=1.5e-15 Score=80.61 Aligned_cols=85 Identities=21% Similarity=0.315 Sum_probs=60.4
Q ss_pred eeecCCeEEEEeEEcccCCCeEEEEEC--CEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceee
Q psy9145 22 LSVLGHKIVFICMAKGKPRPHITWFKD--GVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT 99 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p~i~w~~~--g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~ 99 (111)
.+.+|+.+.|.|.+.|.|.|.+.|++. +..+.........+...........|.|.+++..|.|.|.|.+.|..|...
T Consensus 12 ~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~ 91 (98)
T cd05870 12 TTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIGGHQ 91 (98)
T ss_pred EEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCCcce
Confidence 567999999999999999999999983 433321110000000111111134799999999999999999999999988
Q ss_pred EEEEEEE
Q psy9145 100 RTFKTDF 106 (111)
Q Consensus 100 ~~~~l~v 106 (111)
.++.|.|
T Consensus 92 ~~~~l~~ 98 (98)
T cd05870 92 KSMYLDI 98 (98)
T ss_pred eEEEEeC
Confidence 8877754
No 33
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.68 E-value=1.7e-15 Score=77.24 Aligned_cols=77 Identities=22% Similarity=0.347 Sum_probs=60.0
Q ss_pred CCeEEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEEEEEE
Q psy9145 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTD 105 (111)
Q Consensus 26 g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~ 105 (111)
|+.+.|.|.+.|.|.|.+.|++++..+....+.... .......|.|.+++..|.|.|.|.+.|..|.......+.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~-----~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~ 75 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSIT-----SEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGI 75 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEE-----ECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEE
Confidence 688999999999999999999988766543333221 111135799999999999999999999999887776655
Q ss_pred EE
Q psy9145 106 FS 107 (111)
Q Consensus 106 v~ 107 (111)
+.
T Consensus 76 ~~ 77 (78)
T cd05743 76 LT 77 (78)
T ss_pred EE
Confidence 43
No 34
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.68 E-value=3.9e-15 Score=76.34 Aligned_cols=76 Identities=22% Similarity=0.491 Sum_probs=57.6
Q ss_pred EEeEEcccCCCeEEEEECCEEeccccceeeEEeEe--cCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEEEEEEE
Q psy9145 31 FICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHY--GTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDF 106 (111)
Q Consensus 31 l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v 106 (111)
+.|.+.|.|.|.+.|+++|..+............. ......+.|.|..++..|+|.|.|.|.|..|...+.+.+..
T Consensus 3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~~ 80 (81)
T cd04971 3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAHF 80 (81)
T ss_pred EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEeee
Confidence 67899999999999999999887554322211100 11223457999999999999999999999999998887653
No 35
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.67 E-value=5.1e-15 Score=77.22 Aligned_cols=80 Identities=28% Similarity=0.480 Sum_probs=68.2
Q ss_pred eeecCCeEEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEE
Q psy9145 22 LSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRT 101 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 101 (111)
.+.+|+.+.|.|.+.+.|.|.+.|++++..+....+...... . ....|.|..++..|.|.|.|.+.|..|.....
T Consensus 11 ~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~--~---~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~ 85 (90)
T PF07679_consen 11 TVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESD--G---GSSSLTIKNVTREDAGTYTCVASNSSGEATAS 85 (90)
T ss_dssp EEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEE--T---TEEEEEESSESGGGSEEEEEEEEETTEEEEEE
T ss_pred EEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecc--c---ceeEEccCCCChhhCEEEEEEEEECCCEEEEE
Confidence 568999999999999999999999999998887555554322 1 24689999999999999999999999999999
Q ss_pred EEEEE
Q psy9145 102 FKTDF 106 (111)
Q Consensus 102 ~~l~v 106 (111)
+.|.|
T Consensus 86 ~~l~V 90 (90)
T PF07679_consen 86 VNLTV 90 (90)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 88875
No 36
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.67 E-value=4.3e-15 Score=78.48 Aligned_cols=81 Identities=26% Similarity=0.486 Sum_probs=61.1
Q ss_pred eeecCCeEEEEeEEcccCC-CeEEEEE-CCEEecccc-ceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCC-ce
Q psy9145 22 LSVLGHKIVFICMAKGKPR-PHITWFK-DGVELYAHM-YVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY-NV 97 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~-p~i~w~~-~g~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~-g~ 97 (111)
.+..|+.+.|.|.+.|.|. |.+.|++ ++..+.... +.... ......++|.|..++..|.|.|.|.|.|.. |.
T Consensus 11 ~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~----~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~ 86 (96)
T cd05865 11 EISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVV----RNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGE 86 (96)
T ss_pred EECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEE----eCCCCceEEEEeccChhhCEEEEEEEEcCCCCc
Confidence 4678999999999999995 7999998 676544322 22211 111123579999999999999999999997 88
Q ss_pred eeEEEEEEE
Q psy9145 98 DTRTFKTDF 106 (111)
Q Consensus 98 ~~~~~~l~v 106 (111)
..+++.|.|
T Consensus 87 ~~~s~~l~v 95 (96)
T cd05865 87 SEATVNVKI 95 (96)
T ss_pred EEEEEEEEE
Confidence 888887765
No 37
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.65 E-value=1.9e-15 Score=75.32 Aligned_cols=68 Identities=29% Similarity=0.531 Sum_probs=55.3
Q ss_pred EEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEEEEE
Q psy9145 29 IVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKT 104 (111)
Q Consensus 29 ~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l 104 (111)
+.|.|.+.|.|.|.+.|++++..+....+... .. ...|.|..++..|.|.|.|.+.|..|....++.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~-----~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHI-----SP---EGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEE-----CC---CCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 46899999999999999999987754433322 11 2479999999999999999999999999888765
No 38
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.65 E-value=2.2e-14 Score=77.50 Aligned_cols=82 Identities=21% Similarity=0.273 Sum_probs=61.9
Q ss_pred cCCeEEEEeEEcccCCCeEEEEECCEEecccc-ceeeEEeEecCcceEEEEEEcCCC-CCCCEEEEEEeecCCceeeEEE
Q psy9145 25 LGHKIVFICMAKGKPRPHITWFKDGVELYAHM-YVNLHEWHYGTDRIKSKIEIDPAT-QMDAGIYECYADNMYNVDTRTF 102 (111)
Q Consensus 25 ~g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~C~~~n~~g~~~~~~ 102 (111)
.|..+.|.|.+.|.|.|.+.|++++..+.... ++..... .......+.|.|..++ ..|.|.|.|.|.|..|.....+
T Consensus 22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~-~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i 100 (109)
T cd05773 22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTE-HTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDI 100 (109)
T ss_pred CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEee-ccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEE
Confidence 56889999999999999999999998875322 2221111 1111223579999987 5899999999999999998888
Q ss_pred EEEEE
Q psy9145 103 KTDFS 107 (111)
Q Consensus 103 ~l~v~ 107 (111)
.|.+.
T Consensus 101 ~L~~~ 105 (109)
T cd05773 101 QLVST 105 (109)
T ss_pred EEEec
Confidence 88764
No 39
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.65 E-value=3.4e-15 Score=76.60 Aligned_cols=77 Identities=29% Similarity=0.497 Sum_probs=60.7
Q ss_pred eecCCeEEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEEE
Q psy9145 23 SVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTF 102 (111)
Q Consensus 23 ~~~g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~ 102 (111)
...|+.+.|.|.+.+.|.|.+.|++++..+........ ......|.|..++..|+|.|.|.+.|..|.....+
T Consensus 6 ~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~-------~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~ 78 (82)
T cd05856 6 RPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGES-------RKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATY 78 (82)
T ss_pred ccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCcccee-------cCceEEEEEccCChhhCEEEEEEEEcCCccEEEEE
Confidence 35799999999999999999999998876543322111 11124799999999999999999999999988887
Q ss_pred EEEE
Q psy9145 103 KTDF 106 (111)
Q Consensus 103 ~l~v 106 (111)
.|.|
T Consensus 79 ~v~v 82 (82)
T cd05856 79 KVDV 82 (82)
T ss_pred EEeC
Confidence 7654
No 40
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.65 E-value=2.5e-15 Score=75.31 Aligned_cols=70 Identities=21% Similarity=0.415 Sum_probs=55.1
Q ss_pred EEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEEEEEEE
Q psy9145 29 IVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDF 106 (111)
Q Consensus 29 ~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v 106 (111)
+.|.|.+.|.|.|.+.|++++..+..... .. .. ....|.|..++..|.|.|.|.+.|..|.....+.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~-~~-----~~--~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRT-KK-----LN--NNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCce-eE-----Ec--CCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 36889999999999999998865543211 11 01 1247999999999999999999999999998888776
No 41
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.64 E-value=8.3e-15 Score=72.98 Aligned_cols=68 Identities=25% Similarity=0.488 Sum_probs=52.8
Q ss_pred CCeEEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEEEEE
Q psy9145 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKT 104 (111)
Q Consensus 26 g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l 104 (111)
|+.+.|.|.+.|.|.|.+.|++++..+........ . ...|.|.++. |.|.|.|.|.|..|....+..|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~-----~----~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV-----G----RNVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceec-----C----ccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 67899999999999999999999987654322111 1 1357777764 7899999999999998887765
No 42
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.63 E-value=1e-14 Score=74.17 Aligned_cols=74 Identities=26% Similarity=0.545 Sum_probs=55.3
Q ss_pred EEEEeEEcccCCCeEEEEECCEEeccccc-eeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEEEEEEEE
Q psy9145 29 IVFICMAKGKPRPHITWFKDGVELYAHMY-VNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFS 107 (111)
Q Consensus 29 ~~l~C~~~~~p~p~i~w~~~g~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~ 107 (111)
+.|.|.+.|.|.|.+.|+++|..+..... ... ... ...|.|..++..|.|.|.|.+.|..|....+..+.|.
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~-----~~~--~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~ 73 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSV-----SSK--ERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLS 73 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEE-----eCC--CCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEE
Confidence 46899999999999999999987654321 111 111 2378999999999999999999999987655555554
Q ss_pred EE
Q psy9145 108 IT 109 (111)
Q Consensus 108 ~~ 109 (111)
++
T Consensus 74 v~ 75 (77)
T cd05760 74 II 75 (77)
T ss_pred Ee
Confidence 43
No 43
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.63 E-value=1.1e-14 Score=73.45 Aligned_cols=73 Identities=26% Similarity=0.477 Sum_probs=56.9
Q ss_pred CCeEEEEeEEcccCCCeEEEEE-CCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEEEEE
Q psy9145 26 GHKIVFICMAKGKPRPHITWFK-DGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKT 104 (111)
Q Consensus 26 g~~~~l~C~~~~~p~p~i~w~~-~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l 104 (111)
|+.+.|.|.+.|.|.|.+.|++ ++..+....+.... . ...|.|..+...|.|.|.|.+.|..|..+..+.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~----~----~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 72 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVY----D----NGTLDILITTVKDTGSFTCIASNAAGEATATVEL 72 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEe----c----CCEEEEEECChhhCEEEEEEEECCCCeEEEEEEE
Confidence 6889999999999999999997 56555433222111 1 1368888999999999999999999998888877
Q ss_pred EE
Q psy9145 105 DF 106 (111)
Q Consensus 105 ~v 106 (111)
.|
T Consensus 73 ~v 74 (74)
T cd05764 73 HI 74 (74)
T ss_pred EC
Confidence 64
No 44
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.62 E-value=4.2e-14 Score=73.18 Aligned_cols=79 Identities=16% Similarity=0.247 Sum_probs=59.2
Q ss_pred CeEEEEeEEcccCCC--eEEEEECCEEecccc-ceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEEEE
Q psy9145 27 HKIVFICMAKGKPRP--HITWFKDGVELYAHM-YVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFK 103 (111)
Q Consensus 27 ~~~~l~C~~~~~p~p--~i~w~~~g~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~ 103 (111)
+.+.|.|.+.|.|.| .+.|++++..+.... ....... ......+.|.|..++..|.|.|.|.|.|..|..+++..
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~--~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~ 78 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRM--EVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASAT 78 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEE--EecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEE
Confidence 468899999999987 479999998775322 1111111 11112357999999999999999999999999999998
Q ss_pred EEEE
Q psy9145 104 TDFS 107 (111)
Q Consensus 104 l~v~ 107 (111)
|.|.
T Consensus 79 L~V~ 82 (85)
T cd05854 79 LVVR 82 (85)
T ss_pred EEEE
Confidence 8775
No 45
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.62 E-value=1.4e-14 Score=73.21 Aligned_cols=73 Identities=25% Similarity=0.383 Sum_probs=54.0
Q ss_pred EEEEeEEcccCCCeEEEEECCEEeccc-cceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEEEEEEE
Q psy9145 29 IVFICMAKGKPRPHITWFKDGVELYAH-MYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDF 106 (111)
Q Consensus 29 ~~l~C~~~~~p~p~i~w~~~g~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v 106 (111)
+.|.|.+.|.|.|.+.|++++...... ...+... ... ...|.|..++..|.|.|.|.+.|..|.....+.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~--~~~---~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHV--MPE---DDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEE--ecC---CCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 368899999999999999987532211 1111110 011 136889999999999999999999999988888776
No 46
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.62 E-value=1.2e-14 Score=74.19 Aligned_cols=75 Identities=24% Similarity=0.448 Sum_probs=59.7
Q ss_pred eeecCCeEEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEE
Q psy9145 22 LSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRT 101 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 101 (111)
.+.+|+.+.|.|.+.+. .+.+.|+++|..+....+.... . ..|.|..++..|+|.|.|.+.|..|.....
T Consensus 5 ~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~-----~----~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~ 74 (79)
T cd04973 5 SAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT-----G----EEVQIKDAVPRDSGLYACVTSSPSGSDTTY 74 (79)
T ss_pred EecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe-----C----CEEEECCCChhhCEEEEEEEeCCCCcccEE
Confidence 56799999999999886 5689999999877654333221 1 268999999999999999999999987777
Q ss_pred EEEEE
Q psy9145 102 FKTDF 106 (111)
Q Consensus 102 ~~l~v 106 (111)
+.|.|
T Consensus 75 ~~v~V 79 (79)
T cd04973 75 FSVNV 79 (79)
T ss_pred EEEeC
Confidence 76654
No 47
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.61 E-value=9.6e-15 Score=72.73 Aligned_cols=69 Identities=26% Similarity=0.436 Sum_probs=54.4
Q ss_pred EEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEEEEEEE
Q psy9145 29 IVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDF 106 (111)
Q Consensus 29 ~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v 106 (111)
+.|.|.+.|.|.|.+.|++++..+... +.... . ...|.|..++..|.|.|.|.+.|..|.......|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~~----~----~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKG-RAEIL----D----DKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCC-cEEEe----e----CCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 468999999999999999987655322 22111 1 237999999999999999999999999988887764
No 48
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.61 E-value=5.8e-14 Score=74.41 Aligned_cols=85 Identities=22% Similarity=0.397 Sum_probs=56.8
Q ss_pred eeecCCeEEEEeEEcccCCCeEEEEECCEEeccccc-eeeEEeEecCcc-eEEEEEEcCCCCCCCEEEEEEeecCCce-e
Q psy9145 22 LSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMY-VNLHEWHYGTDR-IKSKIEIDPATQMDAGIYECYADNMYNV-D 98 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~-~~~~~~~~~~~~-~~~~l~i~~~~~~~~g~y~C~~~n~~g~-~ 98 (111)
.+.+|+.+.|.|.+.|.|.|.+.|+++|..+..... ............ ....+.....+..|.|.|.|.+.|..|. .
T Consensus 12 ~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~~~ 91 (100)
T cd07693 12 IVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAV 91 (100)
T ss_pred EEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEcccccee
Confidence 567999999999999999999999999987764210 000000011111 1111222334689999999999999998 6
Q ss_pred eEEEEEEE
Q psy9145 99 TRTFKTDF 106 (111)
Q Consensus 99 ~~~~~l~v 106 (111)
+..+.|.|
T Consensus 92 s~~~~l~v 99 (100)
T cd07693 92 SRNASLEV 99 (100)
T ss_pred cceEEEEe
Confidence 66676655
No 49
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.61 E-value=1.6e-14 Score=75.50 Aligned_cols=80 Identities=21% Similarity=0.379 Sum_probs=58.9
Q ss_pred CCeEEEEeEEcccCCCeEEEEECCEEeccc--cc-eeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEEE
Q psy9145 26 GHKIVFICMAKGKPRPHITWFKDGVELYAH--MY-VNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTF 102 (111)
Q Consensus 26 g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~--~~-~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~ 102 (111)
|+.+.|.|.+.+.|.|.+.|++++...... .. .......... ...|.|.+++..|.|.|.|.+.|..|.....+
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 77 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQ---TGDLTITNVQRSDVGYYICQTLNVAGSILTKA 77 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECC---CCeEEEeeCChhhCEEEEEEEEcCCCceEEEE
Confidence 688999999999999999999987543110 00 0000111111 23699999999999999999999999999998
Q ss_pred EEEEEE
Q psy9145 103 KTDFSI 108 (111)
Q Consensus 103 ~l~v~~ 108 (111)
.|.|..
T Consensus 78 ~l~V~~ 83 (90)
T cd05726 78 YLEVTD 83 (90)
T ss_pred EEEEee
Confidence 888764
No 50
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.61 E-value=3.1e-14 Score=74.42 Aligned_cols=81 Identities=23% Similarity=0.398 Sum_probs=57.4
Q ss_pred CCeEEEEeEEcccCCCeEEEEEC----CEEeccccceeeEEeEe----cCcceEEEEEEcCCCCCCCEEEEEEeecCCce
Q psy9145 26 GHKIVFICMAKGKPRPHITWFKD----GVELYAHMYVNLHEWHY----GTDRIKSKIEIDPATQMDAGIYECYADNMYNV 97 (111)
Q Consensus 26 g~~~~l~C~~~~~p~p~i~w~~~----g~~~~~~~~~~~~~~~~----~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~ 97 (111)
|+.+.|.|.+.|.|.|.+.|+++ +..+............. ........|.|..++.+|.|.|.|.+.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 68899999999999999999984 33332211111000000 00111257999999999999999999999999
Q ss_pred eeEEEEEEE
Q psy9145 98 DTRTFKTDF 106 (111)
Q Consensus 98 ~~~~~~l~v 106 (111)
...+..|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 988888876
No 51
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.61 E-value=1.2e-14 Score=72.67 Aligned_cols=70 Identities=30% Similarity=0.584 Sum_probs=54.9
Q ss_pred EEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEEEEEEE
Q psy9145 29 IVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDF 106 (111)
Q Consensus 29 ~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v 106 (111)
+.|.|.+.|.|.|.+.|++++..+... .... .. ....|.|.+++..|.|.|.|.+.|..|.....+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~-----~~--~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPAD-RTKF-----EN--FNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCC-ceeE-----ec--CCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 468999999999999999988765422 1111 11 1247999999999999999999999999988887765
No 52
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.60 E-value=1.4e-13 Score=72.96 Aligned_cols=82 Identities=22% Similarity=0.300 Sum_probs=62.2
Q ss_pred eeecCCeEEEEeEEcccCCC-eEEEEECCEEeccc--cceeeEEeEecCcceEEEEEEcCCCCCC-CEEEEEEeecCCce
Q psy9145 22 LSVLGHKIVFICMAKGKPRP-HITWFKDGVELYAH--MYVNLHEWHYGTDRIKSKIEIDPATQMD-AGIYECYADNMYNV 97 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p-~i~w~~~g~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~~-~g~y~C~~~n~~g~ 97 (111)
.+..|+.+.|.|.+.|.|.| .+.|++++..+... .++...... ......+.|.|..++..| .|.|.|.|.|..|.
T Consensus 12 ~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~-~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~ 90 (98)
T cd05758 12 YAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDP-SPGGVLSTLTISNTQESDFQTSYNCTAWNSFGS 90 (98)
T ss_pred EEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEec-CCCceEEEEEECCccccccceeEEEEEEcCCCc
Confidence 45789999999999999999 59999999877543 233332211 112234579999999855 89999999999999
Q ss_pred eeEEEEE
Q psy9145 98 DTRTFKT 104 (111)
Q Consensus 98 ~~~~~~l 104 (111)
....+.|
T Consensus 91 ~~~~~~L 97 (98)
T cd05758 91 GTAIISL 97 (98)
T ss_pred ccEEEEe
Confidence 8888765
No 53
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.60 E-value=4.9e-14 Score=74.23 Aligned_cols=70 Identities=23% Similarity=0.446 Sum_probs=53.3
Q ss_pred ecCCeEEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCC-CCCCEEEEEEeecCCceeeE
Q psy9145 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPAT-QMDAGIYECYADNMYNVDTR 100 (111)
Q Consensus 24 ~~g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~C~~~n~~g~~~~ 100 (111)
..|+.+.|.|.+.|.|.|.+.|+++|..+......... .. ...|.|..+. ..|.|.|.|.|.|..|....
T Consensus 17 ~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~---~~----~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S 87 (94)
T cd05848 17 SDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYS---LI----DGNLIISNPSEVKDSGRYQCLATNSIGSILS 87 (94)
T ss_pred CCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEE---ee----CCeEEEccCCccCcCEEEEEEEEcCCCeEEe
Confidence 35789999999999999999999999877543222111 11 1367787774 68999999999999997743
No 54
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.59 E-value=4.6e-14 Score=73.88 Aligned_cols=76 Identities=21% Similarity=0.397 Sum_probs=59.3
Q ss_pred eeecCCeEEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCcee-eE
Q psy9145 22 LSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD-TR 100 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~-~~ 100 (111)
.+.+|+.+.|.|.+.|. .|.+.|++++..+... +... ... ...|.|..++..|.|.|.|.+.|..|.. +.
T Consensus 14 ~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~~~-----~~~--~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~ 84 (91)
T cd05740 14 PPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RLQL-----SND--NRTLTFNNVTRSDTGHYQCEASNEVSNMTSD 84 (91)
T ss_pred ccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CEEE-----eCC--CCEEEECcCChhhCEEEEEEEEcCCCCEEee
Confidence 56789999999999999 9999999998876432 2211 111 2379999999999999999999999975 44
Q ss_pred EEEEEE
Q psy9145 101 TFKTDF 106 (111)
Q Consensus 101 ~~~l~v 106 (111)
.+.|.|
T Consensus 85 ~~~L~V 90 (91)
T cd05740 85 PYILNV 90 (91)
T ss_pred eEEEEe
Confidence 666665
No 55
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.59 E-value=5.7e-14 Score=71.17 Aligned_cols=74 Identities=27% Similarity=0.483 Sum_probs=57.6
Q ss_pred EEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEEEEEEEE
Q psy9145 29 IVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFS 107 (111)
Q Consensus 29 ~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~ 107 (111)
+.|.|.+.|.|.|.+.|++++..+.......... ... ...|.|..++..|.|.|.|.+.|..|.....+.|.|.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~--~~~---~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTL--IAN---GSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEE--eCC---CCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 3689999999999999999998775433222211 111 1368999999999999999999999999988888764
No 56
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.58 E-value=6.2e-14 Score=73.28 Aligned_cols=81 Identities=22% Similarity=0.329 Sum_probs=56.5
Q ss_pred CCeEEEEeEEcccCCCeEEEEECC----EEecccc--ceeeEEeEecC--cceEEEEEEcCCCCCCCEEEEEEeecCCce
Q psy9145 26 GHKIVFICMAKGKPRPHITWFKDG----VELYAHM--YVNLHEWHYGT--DRIKSKIEIDPATQMDAGIYECYADNMYNV 97 (111)
Q Consensus 26 g~~~~l~C~~~~~p~p~i~w~~~g----~~~~~~~--~~~~~~~~~~~--~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~ 97 (111)
|+.+.|.|.+.|.|.|.+.|++++ ..+.... ........... ......|.|.+++..|.|.|.|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 678999999999999999999853 2221111 10111000000 011236889999999999999999999999
Q ss_pred eeEEEEEEE
Q psy9145 98 DTRTFKTDF 106 (111)
Q Consensus 98 ~~~~~~l~v 106 (111)
..++..|.|
T Consensus 81 ~~~sa~L~V 89 (90)
T cd04974 81 SHHSAWLTV 89 (90)
T ss_pred ccCCEEEEe
Confidence 999888876
No 57
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.58 E-value=7.3e-14 Score=72.09 Aligned_cols=81 Identities=19% Similarity=0.242 Sum_probs=58.1
Q ss_pred CCeEEEEeEEccc--CCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEEEE
Q psy9145 26 GHKIVFICMAKGK--PRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFK 103 (111)
Q Consensus 26 g~~~~l~C~~~~~--p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~ 103 (111)
|+.+.|.|.+.+. |.|.+.|.+++......................+.|.|..++..|.|.|.|.+.|..|....+..
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 7889999999998 78899999876544321111000000111223468999999999999999999999999888887
Q ss_pred EEE
Q psy9145 104 TDF 106 (111)
Q Consensus 104 l~v 106 (111)
|.|
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 765
No 58
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.58 E-value=1.8e-14 Score=73.76 Aligned_cols=78 Identities=28% Similarity=0.365 Sum_probs=55.7
Q ss_pred CCeEEEEeEEcccCCCeEEEEECCE--E-eccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEEE
Q psy9145 26 GHKIVFICMAKGKPRPHITWFKDGV--E-LYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTF 102 (111)
Q Consensus 26 g~~~~l~C~~~~~p~p~i~w~~~g~--~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~ 102 (111)
|+.+.|.|.+.|.|.|.+.|++++. . ............... ....|.|..++..|.|.|.|.+.|..|.....+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 77 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVT---NIGQLVIYNAQPQDAGLYTCTARNSGGLLRANF 77 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEc---cccEEEEccCCcccCEEEEEEEecCCceEEEEE
Confidence 6889999999999999999998632 1 110000000000001 124799999999999999999999999999988
Q ss_pred EEEE
Q psy9145 103 KTDF 106 (111)
Q Consensus 103 ~l~v 106 (111)
.|.|
T Consensus 78 ~l~v 81 (81)
T cd05765 78 PLSV 81 (81)
T ss_pred EEeC
Confidence 8765
No 59
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.57 E-value=2e-13 Score=71.52 Aligned_cols=78 Identities=27% Similarity=0.520 Sum_probs=58.3
Q ss_pred eeecCCeEEEEeEEcccCCCeEEEEE-CCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCcee-e
Q psy9145 22 LSVLGHKIVFICMAKGKPRPHITWFK-DGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD-T 99 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p~i~w~~-~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~-~ 99 (111)
.+..|+.+.|.|.+.|.|. .+.|++ ++..+....+.... .......|.|..++..|+|.|.|.|.|..|.. .
T Consensus 11 ~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~-----~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 84 (92)
T cd05866 11 ELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQ-----KEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQE 84 (92)
T ss_pred EEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEE-----eCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEE
Confidence 5679999999999999997 899998 46655443333221 11112479999999999999999999999975 4
Q ss_pred EEEEEE
Q psy9145 100 RTFKTD 105 (111)
Q Consensus 100 ~~~~l~ 105 (111)
+++.|.
T Consensus 85 ~~i~l~ 90 (92)
T cd05866 85 ATVVLE 90 (92)
T ss_pred EEEEEE
Confidence 455554
No 60
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.56 E-value=7.8e-14 Score=70.40 Aligned_cols=73 Identities=30% Similarity=0.497 Sum_probs=54.6
Q ss_pred EEEEeEEcc-cCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEEEE
Q psy9145 29 IVFICMAKG-KPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFK 103 (111)
Q Consensus 29 ~~l~C~~~~-~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~ 103 (111)
+.|.|.+.| .|.|.+.|++++..+....+.... ..........|.|..++..|.|.|.|.+.|..|....++.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~--~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNI--KIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceE--EEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 368999998 999999999999877654332210 0111122357999999999999999999999998877654
No 61
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.56 E-value=7.6e-14 Score=70.41 Aligned_cols=72 Identities=26% Similarity=0.492 Sum_probs=52.9
Q ss_pred EEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCcee-eEEEEEEE
Q psy9145 29 IVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD-TRTFKTDF 106 (111)
Q Consensus 29 ~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~-~~~~~l~v 106 (111)
+.|.|.+.|.|.|.+.|++++..+......+... .. ...|.|..++..|.|.|.|.+.|..|.. +....|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~---~~---~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQ---LR---SGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEE---cC---CcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 3689999999999999999988765322111111 11 2368899999999999999999999974 45555544
No 62
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.56 E-value=1.1e-13 Score=71.61 Aligned_cols=76 Identities=28% Similarity=0.515 Sum_probs=58.5
Q ss_pred eeecCCeEEEEeEE-cccCCCeEEEEECCEEecccc-ceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceee
Q psy9145 22 LSVLGHKIVFICMA-KGKPRPHITWFKDGVELYAHM-YVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT 99 (111)
Q Consensus 22 ~~~~g~~~~l~C~~-~~~p~p~i~w~~~g~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~ 99 (111)
.+.+|+.+.|.|.+ .+.|.|.+.|++++..+.... +.... . ...|.|..++..|.|.|.|.+.|..|...
T Consensus 7 ~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~----~----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 78 (86)
T cd05724 7 QVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIV----D----DGNLLIAEARKSDEGTYKCVATNMVGERE 78 (86)
T ss_pred EEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEc----c----CCEEEEeECCcccCEEEEEEEEeccCcee
Confidence 56799999999998 789999999999998766422 21111 1 23799999999999999999999999754
Q ss_pred -EEEEEE
Q psy9145 100 -RTFKTD 105 (111)
Q Consensus 100 -~~~~l~ 105 (111)
..+.|.
T Consensus 79 s~~~~l~ 85 (86)
T cd05724 79 SAAARLS 85 (86)
T ss_pred eeeEEEE
Confidence 344443
No 63
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.55 E-value=3.8e-13 Score=70.85 Aligned_cols=74 Identities=20% Similarity=0.292 Sum_probs=53.9
Q ss_pred ecCCeEEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCC-CCCCEEEEEEeecCCceeeE-E
Q psy9145 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPAT-QMDAGIYECYADNMYNVDTR-T 101 (111)
Q Consensus 24 ~~g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~C~~~n~~g~~~~-~ 101 (111)
..|+.+.|.|.+.|.|.|.+.|+++|..+......... .. ...|.|..+. ..|.|.|.|.|.|..|.... .
T Consensus 17 ~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~---~~----~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~ 89 (94)
T cd05850 17 SPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYT---LV----AGNLVINNPQKARDAGSYQCLAINRCGTVVSRE 89 (94)
T ss_pred CCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEE---EE----CCeEEEccCCccCcCEEEEEEEEcCcCcEEEEE
Confidence 34678999999999999999999999887532211111 11 1367787754 58999999999999997654 4
Q ss_pred EEE
Q psy9145 102 FKT 104 (111)
Q Consensus 102 ~~l 104 (111)
+.|
T Consensus 90 a~l 92 (94)
T cd05850 90 ANL 92 (94)
T ss_pred EEE
Confidence 443
No 64
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.55 E-value=3e-13 Score=69.94 Aligned_cols=79 Identities=20% Similarity=0.275 Sum_probs=58.1
Q ss_pred CeEEEEeEEcccCCC--eEEEEECCEEeccccc-eeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEEEE
Q psy9145 27 HKIVFICMAKGKPRP--HITWFKDGVELYAHMY-VNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFK 103 (111)
Q Consensus 27 ~~~~l~C~~~~~p~p--~i~w~~~g~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~ 103 (111)
+.+.|.|.+.+.|.| .+.|+++|..+..... ...... ......+.|.|..++..|+|.|.|.+.|..|....+..
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 78 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRV--GGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASAD 78 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEE--ecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEE
Confidence 468899999999987 5689999987754321 100000 00111357999999999999999999999999988888
Q ss_pred EEEE
Q psy9145 104 TDFS 107 (111)
Q Consensus 104 l~v~ 107 (111)
|.|.
T Consensus 79 l~V~ 82 (85)
T cd04970 79 LIVR 82 (85)
T ss_pred EEEE
Confidence 8775
No 65
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.55 E-value=7.3e-14 Score=69.95 Aligned_cols=69 Identities=22% Similarity=0.305 Sum_probs=52.7
Q ss_pred EEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEEEEEEE
Q psy9145 30 VFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDF 106 (111)
Q Consensus 30 ~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v 106 (111)
.|.|.+.|.|.|.+.|++++..+..... ... ... .+|.|.+++.+|+|.|.|.+.|..........+.+
T Consensus 2 ~l~c~v~g~P~P~v~W~kdg~~l~~~~~-~~~---~~~----~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~ 70 (72)
T cd07702 2 RLTPKVKAFPAPEVIWLKDGLPAAEKCS-RYH---VDG----YSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITL 70 (72)
T ss_pred eEEeeEEEcCCCeEEEEECCEECCCCCc-EEE---eCC----CEEEECcCCHHHCEEEEEEEEccccceEeeEEEEE
Confidence 6889999999999999999987654311 111 111 36999999999999999999999777666655544
No 66
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.54 E-value=5.3e-13 Score=68.71 Aligned_cols=81 Identities=28% Similarity=0.525 Sum_probs=61.9
Q ss_pred eeecCCeEEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEE
Q psy9145 22 LSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRT 101 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 101 (111)
.+..|+.+.|.|.+.+.|.+.+.|++++..+......... ........|.|..++..|.|.|.|.+.|..|....+
T Consensus 5 ~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~----~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~ 80 (85)
T cd05729 5 AVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGY----KVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHT 80 (85)
T ss_pred EecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEE----EccCcEEEEEEeECCcccCEEEEEEEEECCceEEEE
Confidence 3468999999999999999999999998776533222211 111112468889999999999999999999998888
Q ss_pred EEEEE
Q psy9145 102 FKTDF 106 (111)
Q Consensus 102 ~~l~v 106 (111)
+.|.|
T Consensus 81 ~~l~v 85 (85)
T cd05729 81 YKVDV 85 (85)
T ss_pred EEEeC
Confidence 87764
No 67
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.54 E-value=1.6e-13 Score=72.27 Aligned_cols=78 Identities=21% Similarity=0.302 Sum_probs=59.6
Q ss_pred eeecCCeEEEEeEEcc-----cCCCeEEEEECCEEeccc--cceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecC
Q psy9145 22 LSVLGHKIVFICMAKG-----KPRPHITWFKDGVELYAH--MYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNM 94 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~-----~p~p~i~w~~~g~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~ 94 (111)
.+.+|+.+.|.|.+.+ .|.|.+.|++++..+... ...+.. .. ...|.|..+..+|+|.|.|.+.|.
T Consensus 10 ~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~---~~----~~~L~I~~~~~~DsG~Y~C~~~N~ 82 (94)
T cd05756 10 YVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMH---QQ----KDLLWFLPAALEDSGLYTCVVRNS 82 (94)
T ss_pred EEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceee---ec----CCeEEEccCCcccCeEEEEEEcCC
Confidence 4568999999999988 688899999988653321 111111 11 237899999999999999999999
Q ss_pred CceeeEEEEEEE
Q psy9145 95 YNVDTRTFKTDF 106 (111)
Q Consensus 95 ~g~~~~~~~l~v 106 (111)
.|..+..+.|.|
T Consensus 83 ~g~~~~~~~L~v 94 (94)
T cd05756 83 TYCMKVSISLTV 94 (94)
T ss_pred CccEEEEEEEEC
Confidence 999888887764
No 68
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.52 E-value=1.9e-12 Score=66.84 Aligned_cols=81 Identities=20% Similarity=0.356 Sum_probs=56.9
Q ss_pred CCeEEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCc--eeeEEEE
Q psy9145 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN--VDTRTFK 103 (111)
Q Consensus 26 g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g--~~~~~~~ 103 (111)
|+.+.|.|.+.+.|.+.+.|++.+......... ............+.|.|..++..|+|.|.|.+.|..+ ....++.
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~ 79 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPE-VEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVN 79 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceE-EEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEE
Confidence 788999999999999999999876543221111 0011112223346899999999999999999999876 5566666
Q ss_pred EEEE
Q psy9145 104 TDFS 107 (111)
Q Consensus 104 l~v~ 107 (111)
|.|.
T Consensus 80 i~V~ 83 (84)
T cd05861 80 ITVH 83 (84)
T ss_pred EEEe
Confidence 6653
No 69
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.52 E-value=7.5e-13 Score=69.43 Aligned_cols=79 Identities=28% Similarity=0.554 Sum_probs=57.2
Q ss_pred eeecCCeEEEEeEEcccCCCeEEEEE-CCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCce-ee
Q psy9145 22 LSVLGHKIVFICMAKGKPRPHITWFK-DGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV-DT 99 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p~i~w~~-~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~-~~ 99 (111)
.+..|+.+.|.|.+.|.| +.+.|++ ++..+....+.... ......+.|.|..++..|+|.|.|.+.|..|. ..
T Consensus 11 ~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~~~~~~~----~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~ 85 (92)
T cd04977 11 EISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVV----QNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESE 85 (92)
T ss_pred EECCCCeEEEEEEeEeeC-CeEEEECCCCCEeccCCCEEEE----eCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcce
Confidence 567999999999999986 5899997 56555432222211 12223458999999999999999999999764 55
Q ss_pred EEEEEE
Q psy9145 100 RTFKTD 105 (111)
Q Consensus 100 ~~~~l~ 105 (111)
.++.|.
T Consensus 86 ~sv~l~ 91 (92)
T cd04977 86 ATVNLK 91 (92)
T ss_pred eEEEEE
Confidence 566554
No 70
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.51 E-value=4.9e-13 Score=68.94 Aligned_cols=81 Identities=16% Similarity=0.133 Sum_probs=58.7
Q ss_pred CeEEEEeEEcc--cCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEEEEE
Q psy9145 27 HKIVFICMAKG--KPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKT 104 (111)
Q Consensus 27 ~~~~l~C~~~~--~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l 104 (111)
+.+.|.|.+.+ .+.+.+.|+++|+.+....... +..........+.|.|.+++..|.|.|.|.+.|..+....+..|
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~-~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L 79 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGD-HFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADL 79 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCc-cEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEE
Confidence 46789999976 4577899999999886321110 00011111112479999999999999999999999999999988
Q ss_pred EEEE
Q psy9145 105 DFSI 108 (111)
Q Consensus 105 ~v~~ 108 (111)
.|.+
T Consensus 80 ~V~~ 83 (85)
T cd05853 80 IVRG 83 (85)
T ss_pred EEec
Confidence 8763
No 71
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.49 E-value=1.2e-12 Score=69.05 Aligned_cols=79 Identities=30% Similarity=0.500 Sum_probs=55.5
Q ss_pred eeecCCeEEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCC-----CCCCCEEEEEEeecC-C
Q psy9145 22 LSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPA-----TQMDAGIYECYADNM-Y 95 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~~~g~y~C~~~n~-~ 95 (111)
.+.+|+.+.|.|.+.+.|.|.+.|+++|..+.......... ... ..+.+..+ ++.|.|.|.|.+.|. .
T Consensus 10 ~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~--~~~----~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~ 83 (95)
T cd05722 10 VAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQ--LPN----GSLLITSVVHSKHNKPDEGFYQCVAQNDSL 83 (95)
T ss_pred EEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEE--ccC----CeEEEeeeeccCCCCCcCEEEEEEEECCcc
Confidence 45689999999999999999999999998776433211110 111 13344333 578999999999999 9
Q ss_pred cee-eEEEEEEE
Q psy9145 96 NVD-TRTFKTDF 106 (111)
Q Consensus 96 g~~-~~~~~l~v 106 (111)
|.. +..+.|.|
T Consensus 84 G~~~s~~~~l~v 95 (95)
T cd05722 84 GSIVSRTARLTV 95 (95)
T ss_pred CcEEEeeeEEeC
Confidence 876 44565543
No 72
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.48 E-value=6.3e-13 Score=67.54 Aligned_cols=67 Identities=27% Similarity=0.483 Sum_probs=47.4
Q ss_pred EEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCC----CCCEEEEEEeecCCceeeE
Q psy9145 29 IVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQ----MDAGIYECYADNMYNVDTR 100 (111)
Q Consensus 29 ~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~~~g~y~C~~~n~~g~~~~ 100 (111)
+.|.|.+.|.|.|.+.|++++..+........... .. ...|.|..++. .|.|.|.|.|.|..|....
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~--~~---~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMK--PD---SGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEe--CC---CCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 46899999999999999999987754322221111 11 23677776643 6799999999999997544
No 73
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.48 E-value=2.7e-12 Score=67.44 Aligned_cols=67 Identities=22% Similarity=0.401 Sum_probs=51.5
Q ss_pred cCCeEEEEeEEcccCCCeEEEEECCEEeccc-cceeeEEeEecCcceEEEEEEcCCC-CCCCEEEEEEeecCCceeeE
Q psy9145 25 LGHKIVFICMAKGKPRPHITWFKDGVELYAH-MYVNLHEWHYGTDRIKSKIEIDPAT-QMDAGIYECYADNMYNVDTR 100 (111)
Q Consensus 25 ~g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~C~~~n~~g~~~~ 100 (111)
.|+.+.|.|.+.|.|.|.+.|++++..+... .+... . ...|.|..+. ..|.|.|.|.|.|..|....
T Consensus 18 ~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~-----~----~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s 86 (93)
T cd05849 18 TEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSM-----V----GGNLVINNPDKYKDAGRYVCIVSNIYGKVRS 86 (93)
T ss_pred cCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEE-----E----CCEEEECcCCcCCCCEEEEEEEEeCcceEEE
Confidence 3557999999999999999999998876432 12111 1 2368888875 58999999999999997654
No 74
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.48 E-value=1.4e-12 Score=66.27 Aligned_cols=67 Identities=25% Similarity=0.495 Sum_probs=46.1
Q ss_pred EEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCC----CCCEEEEEEeecCCceeeE
Q psy9145 29 IVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQ----MDAGIYECYADNMYNVDTR 100 (111)
Q Consensus 29 ~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~~~g~y~C~~~n~~g~~~~ 100 (111)
+.|.|.+.|.|.|.+.|++++..+......... .... .+.|.|..+.. .|.|.|.|.|.|..|....
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~---~~~~--~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVT---MKPN--TGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEE---EeCC--CceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 468999999999999999999876432211111 0111 13566665543 3789999999999998655
No 75
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.47 E-value=1.3e-12 Score=66.98 Aligned_cols=66 Identities=23% Similarity=0.388 Sum_probs=51.6
Q ss_pred eeecCCeEEEEeEEcccCCC-eEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeE
Q psy9145 22 LSVLGHKIVFICMAKGKPRP-HITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTR 100 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p-~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~ 100 (111)
.+..|+.+.|.|.+.|.|.| .+.|+++|..+.... . . ..+.|.+..+ .|.|.|.|.|.|..|....
T Consensus 9 ~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~~--~-------~--~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s 75 (81)
T cd05749 9 SVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDPP--A-------P--SPSVLNVPGL--NETSKFSCEAHNAKGVTTS 75 (81)
T ss_pred EEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCCC--C-------C--CCCEEEEccc--cCCeEEEEEEEeccCcEEe
Confidence 56799999999999999999 799999998775311 0 0 0136777776 4679999999999996554
No 76
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.45 E-value=5.1e-12 Score=66.12 Aligned_cols=70 Identities=24% Similarity=0.435 Sum_probs=51.6
Q ss_pred ecCCeEEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCC-CCCCEEEEEEeecCCceeeE
Q psy9145 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPAT-QMDAGIYECYADNMYNVDTR 100 (111)
Q Consensus 24 ~~g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~C~~~n~~g~~~~ 100 (111)
..|+.+.|.|.+.|.|.|.+.|++++..+......... .. ...|.|.++. ..|.|.|.|.+.|..|....
T Consensus 17 ~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~---~~----~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S 87 (91)
T cd04967 17 SDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYS---LV----GGNLVISNPSKAKDAGRYQCLASNIVGTVLS 87 (91)
T ss_pred CCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEE---EE----CCEEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence 45578999999999999999999999877432211111 01 1367787776 48999999999999997544
No 77
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.45 E-value=4.5e-13 Score=68.38 Aligned_cols=74 Identities=19% Similarity=0.296 Sum_probs=49.1
Q ss_pred EEEEeEEcccCCCeEEEEECCEEeccccc-e--eeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCcee-eEEEEE
Q psy9145 29 IVFICMAKGKPRPHITWFKDGVELYAHMY-V--NLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD-TRTFKT 104 (111)
Q Consensus 29 ~~l~C~~~~~p~p~i~w~~~g~~~~~~~~-~--~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~-~~~~~l 104 (111)
+.|.|.+.|.|.|.+.|++++........ . ...+.... ....|.|..+...|.|.|.|.+.|..|.. +..+.|
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l 77 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLL---SNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVL 77 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEe---cCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEE
Confidence 46899999999999999986432111000 0 00000000 12478999999999999999999999976 445555
Q ss_pred E
Q psy9145 105 D 105 (111)
Q Consensus 105 ~ 105 (111)
.
T Consensus 78 ~ 78 (79)
T cd05734 78 T 78 (79)
T ss_pred e
Confidence 4
No 78
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.45 E-value=1.1e-11 Score=65.50 Aligned_cols=82 Identities=20% Similarity=0.274 Sum_probs=61.0
Q ss_pred eeecCCeEEEEeEEcccCCCe-EEEEECCEEeccc--cceeeEEeEecCcceEEEEEEcCCCCCC-CEEEEEEeecCCce
Q psy9145 22 LSVLGHKIVFICMAKGKPRPH-ITWFKDGVELYAH--MYVNLHEWHYGTDRIKSKIEIDPATQMD-AGIYECYADNMYNV 97 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p~-i~w~~~g~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~~-~g~y~C~~~n~~g~ 97 (111)
.+.+|+.+.|.|.+.+.|.|. +.|.+++..+... .++.+... .......+.|.|.++...| .|.|.|.|.|..|.
T Consensus 12 ~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~-~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~ 90 (98)
T cd05898 12 YAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERT-STGSGVLSTLTINNIMEADFQTHYNCTAWNSFGS 90 (98)
T ss_pred EEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEE-ccCCCcEEEEEECCCccccCCcEEEEEEEeCCcc
Confidence 567999999999998888875 7888776655432 23333222 1223345789999998767 68999999999999
Q ss_pred eeEEEEE
Q psy9145 98 DTRTFKT 104 (111)
Q Consensus 98 ~~~~~~l 104 (111)
.+..+.|
T Consensus 91 d~~~i~L 97 (98)
T cd05898 91 GTAIIQL 97 (98)
T ss_pred ceEEEEe
Confidence 9988876
No 79
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.45 E-value=2.7e-12 Score=65.20 Aligned_cols=68 Identities=24% Similarity=0.422 Sum_probs=46.3
Q ss_pred EEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCC----CCCCEEEEEEeecCCceeeEE
Q psy9145 29 IVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPAT----QMDAGIYECYADNMYNVDTRT 101 (111)
Q Consensus 29 ~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~----~~~~g~y~C~~~n~~g~~~~~ 101 (111)
+.|.|.+.|.|.|.+.|++++..+........... .. ...|.|..+. ..|.|.|.|.|.|..|.....
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~--~~---~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMR--RR---SGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEe--CC---CceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 36899999999999999999986532222111110 11 2367776653 245899999999999976543
No 80
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.42 E-value=4.6e-12 Score=65.45 Aligned_cols=72 Identities=28% Similarity=0.442 Sum_probs=56.5
Q ss_pred eeecCCeEEEEeEEcc-cCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeE
Q psy9145 22 LSVLGHKIVFICMAKG-KPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTR 100 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~-~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~ 100 (111)
.+.+|+.+.|.|.+.+ .|.+.+.|++++..+.... .. ....|.|..++.+|.|.|.|.+.|..|....
T Consensus 12 ~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~--------~~---~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~ 80 (85)
T cd05754 12 EVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA--------MD---FNGILTIRNVQLSDAGTYVCTGSNMLDTDEA 80 (85)
T ss_pred EEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc--------cc---cCCEEEECCCCHHHCEEEEEEEeccCCeEeE
Confidence 4579999999999864 6888999999875432210 01 1247999999999999999999999999888
Q ss_pred EEEE
Q psy9145 101 TFKT 104 (111)
Q Consensus 101 ~~~l 104 (111)
...|
T Consensus 81 ~~~l 84 (85)
T cd05754 81 TATL 84 (85)
T ss_pred EEEE
Confidence 7654
No 81
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.41 E-value=8.1e-12 Score=63.22 Aligned_cols=74 Identities=24% Similarity=0.420 Sum_probs=51.4
Q ss_pred EEEEeEEcc-cCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEEEE
Q psy9145 29 IVFICMAKG-KPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFK 103 (111)
Q Consensus 29 ~~l~C~~~~-~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~ 103 (111)
+.|.|.+.+ .|.+.+.|+++++.+.......... ..........|.|..+...|+|.|.|.+.|..|....++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~-~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKI-KIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceE-EEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 368999864 6778999999988775322111000 0011111357999999999999999999999998877654
No 82
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.38 E-value=4.5e-12 Score=64.48 Aligned_cols=57 Identities=23% Similarity=0.487 Sum_probs=46.2
Q ss_pred eeecCCeEEEEeEEcccCC-CeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecC
Q psy9145 22 LSVLGHKIVFICMAKGKPR-PHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNM 94 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~-p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~ 94 (111)
.+.+|+.+.|.|.+.+.|. +.+.|++++..+... ...|.|..+ ..|+|.|.|.+.|.
T Consensus 11 ~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~~---------------~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 11 TIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLETT---------------TNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred EeeCCCCEEEEEeCCCCCCCccEEEEECCEEeecc---------------CCeEEEeec-ccCCEEeEEECCCC
Confidence 5679999999999988776 469999999876321 136778888 89999999999885
No 83
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.37 E-value=3.4e-11 Score=63.44 Aligned_cols=72 Identities=14% Similarity=0.192 Sum_probs=50.2
Q ss_pred eeecCCeEEEEeEEcccCCCeEEEEECCEEecccccee---eEEeE-ecCcceEEEEEEcCCCCCCCEEEEEEeec
Q psy9145 22 LSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVN---LHEWH-YGTDRIKSKIEIDPATQMDAGIYECYADN 93 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~---~~~~~-~~~~~~~~~l~i~~~~~~~~g~y~C~~~n 93 (111)
.+.+|+.+.|.|.+.+.|.|.+.|++++..+....... ..+.. .........|.|.+++..|.|.|.|.+..
T Consensus 8 tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 8 TVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred EEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence 56899999999999999999999998765321110000 00000 11111235899999999999999999988
No 84
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.35 E-value=8e-11 Score=62.16 Aligned_cols=86 Identities=15% Similarity=0.230 Sum_probs=66.6
Q ss_pred eeecCCeEEEEeEEcccCCCe-EEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeE
Q psy9145 22 LSVLGHKIVFICMAKGKPRPH-ITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTR 100 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p~-i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~ 100 (111)
.+.+|+.+.|.|...++|+|. +.|.+++..+................+-.+.|.+.+++..+.|.|.|.+.|.....+.
T Consensus 14 ~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~ 93 (101)
T cd05860 14 FVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASASV 93 (101)
T ss_pred EEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeEEE
Confidence 568999999999999999998 9999987765432221111111122334578999999999999999999999999999
Q ss_pred EEEEEEE
Q psy9145 101 TFKTDFS 107 (111)
Q Consensus 101 ~~~l~v~ 107 (111)
++.|.|.
T Consensus 94 tF~l~v~ 100 (101)
T cd05860 94 TFNVYVN 100 (101)
T ss_pred EEEEEEe
Confidence 9988764
No 85
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.34 E-value=2.8e-11 Score=63.43 Aligned_cols=78 Identities=22% Similarity=0.262 Sum_probs=59.2
Q ss_pred eeecCCeEEEEeEEcc-----cCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCc
Q psy9145 22 LSVLGHKIVFICMAKG-----KPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN 96 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~-----~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g 96 (111)
.+..|....|.|...+ .|.|.+.|+++++.+........ ....|.|..+..+|+|.|.|.+.|..+
T Consensus 6 ~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~---------~~~~L~I~~v~~~DsG~YtC~~~n~~~ 76 (92)
T cd05757 6 ILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV---------KGSKLLIQNVTEEDAGNYTCKLTFTHN 76 (92)
T ss_pred EEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe---------cCCEEEEeeCChhhCEEEEEEEEecCC
Confidence 4568999999998643 25789999999988764332110 124799999999999999999999988
Q ss_pred eeeEEEEEEEEE
Q psy9145 97 VDTRTFKTDFSI 108 (111)
Q Consensus 97 ~~~~~~~l~v~~ 108 (111)
.....+...+.+
T Consensus 77 ~~~~~~t~t~~l 88 (92)
T cd05757 77 GKQYNVTRTISL 88 (92)
T ss_pred CEEEEEEEEEEE
Confidence 877776655544
No 86
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.34 E-value=3e-11 Score=62.94 Aligned_cols=77 Identities=19% Similarity=0.326 Sum_probs=54.5
Q ss_pred eeecCCeEEEEeEEcccCCCeEEEEECCEEeccccc--eeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCC-cee
Q psy9145 22 LSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMY--VNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY-NVD 98 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~-g~~ 98 (111)
.+.+|+.+.|.|...+ |.+.+.|++++..+..... .+.. .. ...|.|..++..|.|.|.|.+.+.. +..
T Consensus 7 ~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~---~~----~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~ 78 (89)
T cd04979 7 TVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLL---VT----EDGLLIRSVSPADAGVYTCQSVEHGFKQT 78 (89)
T ss_pred EEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEE---Ec----CCCEEEccCCHHHCEEEEEEEecCcccee
Confidence 5678999999999876 7789999998876543210 1111 11 1258899999999999999998654 444
Q ss_pred eEEEEEEE
Q psy9145 99 TRTFKTDF 106 (111)
Q Consensus 99 ~~~~~l~v 106 (111)
..++.|.|
T Consensus 79 ~~~~~l~V 86 (89)
T cd04979 79 LATYSLNV 86 (89)
T ss_pred EeEEEEEE
Confidence 55565555
No 87
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.33 E-value=5.4e-11 Score=61.59 Aligned_cols=64 Identities=25% Similarity=0.328 Sum_probs=50.3
Q ss_pred eeecCCeEEEEeEEcccCCCeEEEEECCEEecccc-ceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCC
Q psy9145 22 LSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHM-YVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY 95 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 95 (111)
.+..|+.+.|.|... .+.+.+.|+++|..+.... +... . ...|.|.+++..|.|.|.|.+.+..
T Consensus 7 ~v~~G~~v~L~C~~~-~~~~~i~W~~ng~~i~~~~~r~~~-----~----~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 7 TFKLGNNAELKCSPK-SNLARVVWKFDGKVLTPESAKYLL-----Y----RDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred EEECCCCEEEEEECC-CCCCeEEEEECCEECCCCCceEEE-----E----CCcEEEeCCCHHHCEEEEEEEEecc
Confidence 567999999999975 4678899999999886542 2211 1 1368999999999999999999864
No 88
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.28 E-value=6.3e-11 Score=62.26 Aligned_cols=78 Identities=14% Similarity=0.107 Sum_probs=53.0
Q ss_pred eeecCCeEEEEeEEcccCCCeEEEEECCEEe-cccc-----------ceeeEEeEecCcceEEEEEEcCCCCCCCEEEEE
Q psy9145 22 LSVLGHKIVFICMAKGKPRPHITWFKDGVEL-YAHM-----------YVNLHEWHYGTDRIKSKIEIDPATQMDAGIYEC 89 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p~i~w~~~g~~~-~~~~-----------~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C 89 (111)
.+.+|+.+.|.|...+.+.+.+.|+++++.. .... ..+..............|.|.+++..|+|.|.|
T Consensus 3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C 82 (94)
T cd07690 3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYIC 82 (94)
T ss_pred EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEE
Confidence 4578999999999998899999999766332 1100 000100000112224579999999999999999
Q ss_pred EeecCCceee
Q psy9145 90 YADNMYNVDT 99 (111)
Q Consensus 90 ~~~n~~g~~~ 99 (111)
.+.|..+..+
T Consensus 83 ~v~~~~~~~~ 92 (94)
T cd07690 83 EVEDKKEEVE 92 (94)
T ss_pred EECCccceEE
Confidence 9999877543
No 89
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.28 E-value=1.3e-10 Score=61.31 Aligned_cols=80 Identities=16% Similarity=0.181 Sum_probs=53.6
Q ss_pred ceeecCCeEEEEeEEcccCCCeEEEEECCEEec--------cccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEee
Q psy9145 21 PLSVLGHKIVFICMAKGKPRPHITWFKDGVELY--------AHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYAD 92 (111)
Q Consensus 21 ~~~~~g~~~~l~C~~~~~p~p~i~w~~~g~~~~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~ 92 (111)
..+.+|+.+.|.|.+.+.|.+.+.|++.+.... ...+.... .......+|.|..++..|+|.|.|.+.
T Consensus 7 v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~----~~~~~~~sL~I~~v~~~DsG~Y~C~~~ 82 (95)
T cd07701 7 VTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELV----RASWHELSISISDVSLSDEGQYTCSLF 82 (95)
T ss_pred EEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEE----ECCCCcEEEEECcCCcccCEEEEEEeE
Confidence 367899999999999999999999986432211 11122110 111123579999999999999999999
Q ss_pred cCCceeeEEEEEE
Q psy9145 93 NMYNVDTRTFKTD 105 (111)
Q Consensus 93 n~~g~~~~~~~l~ 105 (111)
+..+. .....|.
T Consensus 83 t~~~~-~~~~~l~ 94 (95)
T cd07701 83 TMPVK-TSKAYLT 94 (95)
T ss_pred eecCc-cEEEEEE
Confidence 85333 4444443
No 90
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.27 E-value=8.2e-11 Score=56.69 Aligned_cols=63 Identities=35% Similarity=0.628 Sum_probs=48.6
Q ss_pred cCCeEEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCc
Q psy9145 25 LGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN 96 (111)
Q Consensus 25 ~g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g 96 (111)
+|+.+.|.|...+.+.+.+.|++++..+.. ..... . ....|.|..++..|.|.|.|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~~----~---~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE--SNRLS----A---SGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCC--CCEEe----c---CCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 478999999988888899999998877651 11110 1 124789999999999999999998765
No 91
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.26 E-value=1.9e-10 Score=59.57 Aligned_cols=82 Identities=20% Similarity=0.239 Sum_probs=55.3
Q ss_pred CCeEEEEeEEcccCC--CeEEEEECCEEeccccceee-EEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEEE
Q psy9145 26 GHKIVFICMAKGKPR--PHITWFKDGVELYAHMYVNL-HEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTF 102 (111)
Q Consensus 26 g~~~~l~C~~~~~p~--p~i~w~~~g~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~ 102 (111)
|+.+.|.|.+.+.+. ..+.|...+........... ...........+.|.|..++..|.|.|.|.+.|..|....+.
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 788999999987654 46799876653311100000 000001122346899999999999999999999999888888
Q ss_pred EEEEE
Q psy9145 103 KTDFS 107 (111)
Q Consensus 103 ~l~v~ 107 (111)
.|.|.
T Consensus 81 ~~~V~ 85 (86)
T cd05862 81 IVIVH 85 (86)
T ss_pred EEEEe
Confidence 77763
No 92
>KOG3513|consensus
Probab=99.24 E-value=7.9e-11 Score=82.32 Aligned_cols=93 Identities=26% Similarity=0.459 Sum_probs=72.6
Q ss_pred cceeeccccceeecc-----eeecCCeEEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCC
Q psy9145 7 SLSLKRSCQQVKYFP-----LSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQ 81 (111)
Q Consensus 7 ~~~~~~~~~~~~~~~-----~~~~g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 81 (111)
.+.++.+.+.....+ .+..|..+.+.|...+.|.|.+.|.+.+..+....++.... ..+|.|.++++
T Consensus 417 ~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~e--------dGtL~I~n~t~ 488 (1051)
T KOG3513|consen 417 ELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILE--------DGTLEISNVTR 488 (1051)
T ss_pred EEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECC--------CCcEEecccCc
Confidence 445555544333333 56789999999999999999999999887555555554422 24899999999
Q ss_pred CCCEEEEEEeecCCceeeEEEEEEEE
Q psy9145 82 MDAGIYECYADNMYNVDTRTFKTDFS 107 (111)
Q Consensus 82 ~~~g~y~C~~~n~~g~~~~~~~l~v~ 107 (111)
.|.|.|.|.|.|..|.......|.|.
T Consensus 489 ~DaG~YtC~A~N~~G~a~~~~~L~Vk 514 (1051)
T KOG3513|consen 489 SDAGKYTCVAENKLGKAESTGNLIVK 514 (1051)
T ss_pred ccCcEEEEEEEcccCccceEEEEEEe
Confidence 99999999999999999998888764
No 93
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.24 E-value=1.3e-10 Score=59.86 Aligned_cols=64 Identities=25% Similarity=0.331 Sum_probs=50.1
Q ss_pred eeecCCeEEEEeEEc-ccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCcee
Q psy9145 22 LSVLGHKIVFICMAK-GKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD 98 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~-~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 98 (111)
.+.+|+.+.|.|.+. +.+.+.+.|++++..+.... ....+.|..++.+|+|.|.|.+.+..|..
T Consensus 10 ~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~~-------------~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~ 74 (83)
T cd05753 10 VVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYSH-------------SNSNLSIPQATLSDSGSYHCSGIIGSYDY 74 (83)
T ss_pred eecCCCCEEEEeeCCCCCcceEEEEEECCeEccccC-------------CCceEEECccCHHHCEEEEEEEEeCCcee
Confidence 457999999999985 45566799999987553211 02368999999999999999999998843
No 94
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.22 E-value=1.8e-09 Score=54.81 Aligned_cols=80 Identities=25% Similarity=0.443 Sum_probs=59.9
Q ss_pred eeecCCeEEEEeEEcccCCCeEEEEEC-CEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeE
Q psy9145 22 LSVLGHKIVFICMAKGKPRPHITWFKD-GVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTR 100 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p~i~w~~~-g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~ 100 (111)
.+..|+.+.|.|.+.+.+.+.+.|+++ +..+.......... ... ...|.+..++..|.|.|.|.+.+..+....
T Consensus 5 ~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~---~~~--~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~ 79 (86)
T smart00410 5 TVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSR---SGS--NSTLTISNVTPEDSGTYTCAATNSSGSASS 79 (86)
T ss_pred EEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEE---cCC--eeEEEEEeeccccCeEEEEEEEcCCCeEEE
Confidence 456899999999998888889999997 66654232322211 111 357999999999999999999998888777
Q ss_pred EEEEEE
Q psy9145 101 TFKTDF 106 (111)
Q Consensus 101 ~~~l~v 106 (111)
.+.|.|
T Consensus 80 ~~~l~V 85 (86)
T smart00410 80 TTTLTV 85 (86)
T ss_pred EEEEEE
Confidence 765554
No 95
>smart00409 IG Immunoglobulin.
Probab=99.22 E-value=1.8e-09 Score=54.81 Aligned_cols=80 Identities=25% Similarity=0.443 Sum_probs=59.9
Q ss_pred eeecCCeEEEEeEEcccCCCeEEEEEC-CEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeE
Q psy9145 22 LSVLGHKIVFICMAKGKPRPHITWFKD-GVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTR 100 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p~i~w~~~-g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~ 100 (111)
.+..|+.+.|.|.+.+.+.+.+.|+++ +..+.......... ... ...|.+..++..|.|.|.|.+.+..+....
T Consensus 5 ~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~---~~~--~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~ 79 (86)
T smart00409 5 TVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSR---SGS--NSTLTISNVTPEDSGTYTCAATNSSGSASS 79 (86)
T ss_pred EEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEE---cCC--eeEEEEEeeccccCeEEEEEEEcCCCeEEE
Confidence 456899999999998888889999997 66654232322211 111 357999999999999999999998888777
Q ss_pred EEEEEE
Q psy9145 101 TFKTDF 106 (111)
Q Consensus 101 ~~~l~v 106 (111)
.+.|.|
T Consensus 80 ~~~l~V 85 (86)
T smart00409 80 TTTLTV 85 (86)
T ss_pred EEEEEE
Confidence 765554
No 96
>KOG3513|consensus
Probab=99.22 E-value=2.4e-10 Score=80.03 Aligned_cols=78 Identities=24% Similarity=0.497 Sum_probs=66.3
Q ss_pred eeecCCeEEEEeEEcccCCCeEEEEECCEEeccccc---eeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCcee
Q psy9145 22 LSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMY---VNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD 98 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~---~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 98 (111)
.+..|+.+.+-|.+.|.|.|.+.|+++|.++....+ ... . ...|.|..+...|.|.|+|.|.|..|..
T Consensus 342 ~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i-----~----~g~L~is~v~~~dsg~YQC~A~Nk~G~i 412 (1051)
T KOG3513|consen 342 EADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKI-----D----DGTLIISNVQESDSGVYQCIAENKYGTI 412 (1051)
T ss_pred EecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEE-----e----CCEEEEEecccccCeEEEeeeecccceE
Confidence 567899999999999999999999999988875444 222 1 2489999999999999999999999999
Q ss_pred eEEEEEEEEE
Q psy9145 99 TRTFKTDFSI 108 (111)
Q Consensus 99 ~~~~~l~v~~ 108 (111)
.++..|.|..
T Consensus 413 ~anA~L~V~a 422 (1051)
T KOG3513|consen 413 YANAELKVLA 422 (1051)
T ss_pred eeeeEEEEEc
Confidence 9988887753
No 97
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.21 E-value=5.1e-10 Score=56.71 Aligned_cols=70 Identities=21% Similarity=0.476 Sum_probs=52.7
Q ss_pred eeecCCeEEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCc-eeeE
Q psy9145 22 LSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN-VDTR 100 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g-~~~~ 100 (111)
.+.+|+.+.|.|.+.+.|.+.+.|++++..+..... .+.+..+...+.|.|.|.+.+..+ ..+.
T Consensus 10 ~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~---------------~~~~~~~~~~~~g~y~C~~~~~~~~~~s~ 74 (80)
T PF13895_consen 10 SVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQN---------------GLFIPNVSPEDSGNYTCRASNGSGSNTST 74 (80)
T ss_dssp EEETTSEEEEEEEEESSSSSEEEEEETTEEEEEESS---------------EEEESSEEGGGTEEEEEEEEETTEEEEEE
T ss_pred EEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeeee---------------eeeeeeeccccCEEEEEEEEeCCCCeEee
Confidence 467999999999999988899999998866652211 255677788999999999999665 3444
Q ss_pred EEEEEE
Q psy9145 101 TFKTDF 106 (111)
Q Consensus 101 ~~~l~v 106 (111)
.+.|.|
T Consensus 75 ~~~v~V 80 (80)
T PF13895_consen 75 SVNVTV 80 (80)
T ss_dssp EEEEEE
T ss_pred eEEeeC
Confidence 555543
No 98
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.20 E-value=7.3e-10 Score=57.97 Aligned_cols=76 Identities=14% Similarity=0.334 Sum_probs=52.6
Q ss_pred eeecCCeEEEEeEEcccCCCeEEEEEC--CEEecc----ccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEee-cC
Q psy9145 22 LSVLGHKIVFICMAKGKPRPHITWFKD--GVELYA----HMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYAD-NM 94 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p~i~w~~~--g~~~~~----~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~-n~ 94 (111)
...+|+.+.|.|.. +.|.|.+.|++. +..... ..+... ....|.|..+...|+|.|.|.+. +.
T Consensus 7 ~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~---------~~~~L~I~~~~~~DsG~Y~C~a~~~~ 76 (91)
T cd05871 7 YGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIH---------TERGLLLRSLQRSDAGVYTCTAVEHS 76 (91)
T ss_pred EEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEE---------ecCeEEEeeCChhHCEEEEEEEEccC
Confidence 45789999999996 578899999973 222111 111111 12368999999999999999997 56
Q ss_pred CceeeEEEEEEEE
Q psy9145 95 YNVDTRTFKTDFS 107 (111)
Q Consensus 95 ~g~~~~~~~l~v~ 107 (111)
.+.....+.|.|.
T Consensus 77 ~~~~~~~~~l~v~ 89 (91)
T cd05871 77 FSQTLAKYTLHVI 89 (91)
T ss_pred CeEEEEEEEEEEe
Confidence 6656666666653
No 99
>KOG4194|consensus
Probab=99.18 E-value=1.3e-10 Score=77.50 Aligned_cols=82 Identities=29% Similarity=0.372 Sum_probs=64.0
Q ss_pred eeecCCeEEEEeEEcccCCCeEEEEECCEE-eccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeE
Q psy9145 22 LSVLGHKIVFICMAKGKPRPHITWFKDGVE-LYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTR 100 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p~i~w~~~g~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~ 100 (111)
....|+.+.+.|.+.|.|.|.|.|.++|.. ++....-+++-. .++ -.+.|.+++.+|.|.|.|.|.|.+|..+.
T Consensus 623 tl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vm--ped---d~f~Itnvk~eD~GiYtC~A~n~AG~isa 697 (873)
T KOG4194|consen 623 TLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVM--PED---DVFFITNVKIEDQGIYTCTAQNVAGQISA 697 (873)
T ss_pred eeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeec--CCC---CEEEEecccccccceeEEeeeccccceee
Confidence 678999999999999999999999997755 443322222211 111 26889999999999999999999999999
Q ss_pred EEEEEEEE
Q psy9145 101 TFKTDFSI 108 (111)
Q Consensus 101 ~~~l~v~~ 108 (111)
...|.|.-
T Consensus 698 nAtL~V~e 705 (873)
T KOG4194|consen 698 NATLTVLE 705 (873)
T ss_pred ceEEEEec
Confidence 88887753
No 100
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.15 E-value=1.9e-09 Score=56.78 Aligned_cols=79 Identities=19% Similarity=0.268 Sum_probs=52.5
Q ss_pred eeecCCeEEEEeEEcccCCCeEEEEECCEEe-c-------cccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeec
Q psy9145 22 LSVLGHKIVFICMAKGKPRPHITWFKDGVEL-Y-------AHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADN 93 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p~i~w~~~g~~~-~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n 93 (111)
.+.+|+.+.|.|.+.+.+.+.+.|++.+... . ...++... ........|.|..++..|.|.|.|.+.+
T Consensus 8 ~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~----~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 83 (95)
T cd05717 8 TVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLV----NFSANELSISISNVSLSDEGRYTCSLYT 83 (95)
T ss_pred EEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEE----cCCCCeeEEEEccCCcccCEEEEEEEec
Confidence 5679999999999988888899998633211 1 01111110 1111234799999999999999999987
Q ss_pred CCceeeEEEEEE
Q psy9145 94 MYNVDTRTFKTD 105 (111)
Q Consensus 94 ~~g~~~~~~~l~ 105 (111)
... ......|.
T Consensus 84 ~~~-~~~~~~~~ 94 (95)
T cd05717 84 MPV-QTAKATVT 94 (95)
T ss_pred CCC-ceEEEEEE
Confidence 653 34444444
No 101
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.15 E-value=2.6e-10 Score=60.01 Aligned_cols=72 Identities=14% Similarity=0.248 Sum_probs=52.0
Q ss_pred eeecCCeEEEEeEE-cccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCcee
Q psy9145 22 LSVLGHKIVFICMA-KGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD 98 (111)
Q Consensus 22 ~~~~g~~~~l~C~~-~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 98 (111)
.+.+|+.+.|.|.. .|.|.|.+.|++++.........+. .... ..+.|.+..++..|.|.|.|.|.|.....
T Consensus 14 ~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~--~~~~---~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 14 KVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRR--FVSQ---TNGNLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred eeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCe--EEeC---CCCcEEEeecCHhhCceeEEEEEecccCC
Confidence 46789999999987 6889999999998764321111110 0011 12479999999999999999999976543
No 102
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.15 E-value=1.2e-09 Score=55.97 Aligned_cols=76 Identities=25% Similarity=0.432 Sum_probs=47.8
Q ss_pred EEEEeEEcc-cCCCeEEEEECCEEeccccceeeEEeEecC-cceEEEEEEcCCCCCCCEEEEEEeecCCceeeEEEEEE
Q psy9145 29 IVFICMAKG-KPRPHITWFKDGVELYAHMYVNLHEWHYGT-DRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTD 105 (111)
Q Consensus 29 ~~l~C~~~~-~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~ 105 (111)
+.|.|.+.| .|.+.+.|+++|+.+......... ..... ....+.|.+......+.+.|.|.+.|..........+.
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~-~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~ 79 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKEL-LKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVT 79 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCceeeeeE-ecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEE
Confidence 579999976 688899999999876532211110 00001 11234677776666788999999998776544444333
No 103
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=99.13 E-value=1.1e-09 Score=55.76 Aligned_cols=67 Identities=21% Similarity=0.408 Sum_probs=48.3
Q ss_pred EEEEeEE-cccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCcee
Q psy9145 29 IVFICMA-KGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD 98 (111)
Q Consensus 29 ~~l~C~~-~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 98 (111)
+.|.|.. .+.|++.+.||++++.+.......... ......+.|.+...+..|.+.|.|.|.|..+..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~---~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENG---KTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcccccCC---ceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 6789998 478899999999999886432111100 001123568888888889999999999998864
No 104
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.12 E-value=1.5e-09 Score=65.52 Aligned_cols=68 Identities=25% Similarity=0.369 Sum_probs=51.8
Q ss_pred eeecCCeEEEEeEEc-----ccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCc
Q psy9145 22 LSVLGHKIVFICMAK-----GKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN 96 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~-----~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g 96 (111)
.+.+|+.+.|.|.+. +.|.|.+.|+++++.+....+.... .. ...|.|.+++..|+|.|.|.+....+
T Consensus 140 ~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~~----~~---~~~L~I~~V~~~DsG~YtC~a~~~~~ 212 (227)
T PHA02826 140 QFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQLR----NN---NSTLVIKSATHDDSGIYTCNLRFNKN 212 (227)
T ss_pred eEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEEEe----CC---CCEEEECcCCHHhCEEEEEEEEEeEC
Confidence 456899999999975 3457899999999987644433221 11 23799999999999999999998643
No 105
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.12 E-value=1e-09 Score=53.57 Aligned_cols=63 Identities=27% Similarity=0.508 Sum_probs=44.3
Q ss_pred CCeEEEEeEE-cccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEe
Q psy9145 26 GHKIVFICMA-KGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYA 91 (111)
Q Consensus 26 g~~~~l~C~~-~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~ 91 (111)
|+.+.|.|.+ .+.+.+.+.|++++............ .........|.|.+++.+|+|.|.|.+
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~---~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRS---TNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEE---ETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEee---cccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 67777889999987654433222111 122211224999999999999999975
No 106
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.02 E-value=1.5e-08 Score=64.37 Aligned_cols=79 Identities=18% Similarity=0.433 Sum_probs=55.1
Q ss_pred eeecCCeEEEEeEEcccCCC---eEEEEECCEEecccc-----ceeeEEeEec---CcceEEEEEEcCCCCCCCEEEEEE
Q psy9145 22 LSVLGHKIVFICMAKGKPRP---HITWFKDGVELYAHM-----YVNLHEWHYG---TDRIKSKIEIDPATQMDAGIYECY 90 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p---~i~w~~~g~~~~~~~-----~~~~~~~~~~---~~~~~~~l~i~~~~~~~~g~y~C~ 90 (111)
.+..|+.+.|.|.+.|.|.+ .+.|+++|..+.... +.......+. .......|.|.+++..|.|.|.|.
T Consensus 231 ~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~ 310 (326)
T PHA02785 231 VTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCM 310 (326)
T ss_pred EecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEE
Confidence 44679999999999988864 799999998775321 1111110000 111235799999999999999999
Q ss_pred eecCCceeeE
Q psy9145 91 ADNMYNVDTR 100 (111)
Q Consensus 91 ~~n~~g~~~~ 100 (111)
|.|..|....
T Consensus 311 A~n~~~~~~~ 320 (326)
T PHA02785 311 AFTIPSISKT 320 (326)
T ss_pred EEeccCceEe
Confidence 9998865443
No 107
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=99.01 E-value=7.8e-09 Score=53.26 Aligned_cols=77 Identities=16% Similarity=0.331 Sum_probs=55.0
Q ss_pred eeecCCeEEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEE
Q psy9145 22 LSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRT 101 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 101 (111)
.+..|+.+.|.|...+. ...+.|++++..+....+.... ...+.|..++..|+|.|.|.+. +.|....-
T Consensus 7 tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~---------~~GLlI~~~~~~dsG~Y~C~s~-E~gf~~~~ 75 (85)
T cd05872 7 TVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVG---------TDGLLILVTSPEHSGTYRCYSE-EEGFQQLV 75 (85)
T ss_pred EEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEe---------CCCCEEEECCHhhCEEEEEEEe-cCCCeEEE
Confidence 56799999999998765 5689999999877543332221 1247788999999999999877 45655555
Q ss_pred EEEEEEEE
Q psy9145 102 FKTDFSIT 109 (111)
Q Consensus 102 ~~l~v~~~ 109 (111)
....+.++
T Consensus 76 ~~y~l~v~ 83 (85)
T cd05872 76 ASYSLNVV 83 (85)
T ss_pred EEEEEEEe
Confidence 55555443
No 108
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=99.00 E-value=3.4e-08 Score=52.95 Aligned_cols=84 Identities=20% Similarity=0.279 Sum_probs=55.2
Q ss_pred cCCeEEEEeEEcccC------CCeEEEEECC-----E-Eecc--cccee------eEEeEecCcceEEEEEEcCCCCCCC
Q psy9145 25 LGHKIVFICMAKGKP------RPHITWFKDG-----V-ELYA--HMYVN------LHEWHYGTDRIKSKIEIDPATQMDA 84 (111)
Q Consensus 25 ~g~~~~l~C~~~~~p------~p~i~w~~~g-----~-~~~~--~~~~~------~~~~~~~~~~~~~~l~i~~~~~~~~ 84 (111)
.|+.+.|.|.....+ .+.+.|++.. . .+.. ..... .............+|.|.+++..|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 489999999986543 4679999852 1 1110 00000 0000001122346899999999999
Q ss_pred EEEEEEeecCCceeeEEEEEEEEE
Q psy9145 85 GIYECYADNMYNVDTRTFKTDFSI 108 (111)
Q Consensus 85 g~y~C~~~n~~g~~~~~~~l~v~~ 108 (111)
|.|.|.+.+..+.....+.|.|..
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEE
Confidence 999999999888888888887754
No 109
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.00 E-value=1.2e-09 Score=57.38 Aligned_cols=69 Identities=17% Similarity=0.217 Sum_probs=51.1
Q ss_pred eeecCCeEEEEeE-EcccCCCeEEEEECCEEec-cccceeeEEeEecCcceEEEEEEcCCCCCCCE-EEEEEeecCCcee
Q psy9145 22 LSVLGHKIVFICM-AKGKPRPHITWFKDGVELY-AHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG-IYECYADNMYNVD 98 (111)
Q Consensus 22 ~~~~g~~~~l~C~-~~~~p~p~i~w~~~g~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g-~y~C~~~n~~g~~ 98 (111)
.+.+|+.+.|.|. ..|.|.|.+.|+.++.... ...+... .. .+.|.|.+++..|.| .|.|.|.|.....
T Consensus 14 ~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~-----~~---~GnL~fs~v~~~D~g~~Y~C~a~~~~~~~ 85 (95)
T cd05845 14 EVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSM-----GQ---NGNLYFANVEEQDSHPDYICHAHFPGLRT 85 (95)
T ss_pred EEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEE-----CC---CceEEEEEEehhhCCCCeEEEEEcccccc
Confidence 5679999999998 5899999999997653322 1222211 11 257999999999999 7999999976543
No 110
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.94 E-value=7e-08 Score=52.30 Aligned_cols=84 Identities=20% Similarity=0.255 Sum_probs=53.8
Q ss_pred cCCeEEEEeEEcccC------------CCeEEEEEC--CEE---ecc-ccceee-----EEeEecC---cceEEEEEEcC
Q psy9145 25 LGHKIVFICMAKGKP------------RPHITWFKD--GVE---LYA-HMYVNL-----HEWHYGT---DRIKSKIEIDP 78 (111)
Q Consensus 25 ~g~~~~l~C~~~~~p------------~p~i~w~~~--g~~---~~~-~~~~~~-----~~~~~~~---~~~~~~l~i~~ 78 (111)
.|+++.|.|...... .+.+.|++. +.. +.. ...... .+..... .....+|.|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 489999999986432 358999973 211 100 011100 0111111 22356899999
Q ss_pred CCCCCCEEEEEEeecCCceeeEEEEEEEEE
Q psy9145 79 ATQMDAGIYECYADNMYNVDTRTFKTDFSI 108 (111)
Q Consensus 79 ~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~ 108 (111)
++.+|+|.|.|.+.+........+.|.|..
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence 999999999999998777777777776653
No 111
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.93 E-value=2.6e-08 Score=52.87 Aligned_cols=81 Identities=15% Similarity=0.265 Sum_probs=53.5
Q ss_pred eeecCCeEEEEeEEc-----------ccCCCeEEEEECCEEeccccceeeE--EeEecCcceEEEEEEcCCCCCCCEEEE
Q psy9145 22 LSVLGHKIVFICMAK-----------GKPRPHITWFKDGVELYAHMYVNLH--EWHYGTDRIKSKIEIDPATQMDAGIYE 88 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~-----------~~p~p~i~w~~~g~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~~~g~y~ 88 (111)
.+.+|+.+.+.|..- ......+.|++++............ +-+.. ...|.+..+..+|+|.|.
T Consensus 11 ~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~----~~~Lwf~Pa~~eDSG~Y~ 86 (104)
T cd05896 11 MVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKE----EDSIWFRPAELQDSGLYT 86 (104)
T ss_pred EEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEe----CCEEEEEeCChhhCeEEE
Confidence 567999999999961 1123369999987444332221110 11111 137999999999999999
Q ss_pred EEeecCCceeeEEEEEEE
Q psy9145 89 CYADNMYNVDTRTFKTDF 106 (111)
Q Consensus 89 C~~~n~~g~~~~~~~l~v 106 (111)
|.+.|.......++.|.|
T Consensus 87 C~~rN~t~C~~~~i~l~V 104 (104)
T cd05896 87 CVLRNSTYCMKVSMSLTV 104 (104)
T ss_pred EEECCCCcceEEEEEEEC
Confidence 999998876666665543
No 112
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.92 E-value=2.4e-08 Score=52.19 Aligned_cols=64 Identities=19% Similarity=0.315 Sum_probs=47.0
Q ss_pred eeecCCeEEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecC
Q psy9145 22 LSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNM 94 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~ 94 (111)
.+..|+++.|.|... .+...+.|+++|........ ......+.+.|..++..|+|.|.|...+.
T Consensus 12 vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~--------~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 12 VVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKP--------PEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred ccCCCCcEEEEEecC-CCCCEEEEEECCCCcccccc--------CCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 567999999999885 55677889998864332110 11112357999999999999999999886
No 113
>KOG4221|consensus
Probab=98.91 E-value=1.4e-08 Score=72.05 Aligned_cols=78 Identities=26% Similarity=0.515 Sum_probs=59.5
Q ss_pred eeecCCeEEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEE
Q psy9145 22 LSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRT 101 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 101 (111)
.+..|+.+.|.|.+.+.|.|.+.|.++|..+.-.. .++.. .. .+.|.+..++..|+|.|.|.|.|..-...++
T Consensus 248 ~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds-~rivl--~g----~~slliS~a~~~dSg~YtC~Atn~~D~idas 320 (1381)
T KOG4221|consen 248 VVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDS-YRIVL--VG----GSSLLISNATDDDSGKYTCRATNTNDSIDAS 320 (1381)
T ss_pred ccccCCcEEEEEEecCCCCCceEEeeCCeeeeecc-eEEEE--ec----ccceEEeccccccCceEEEEecCCCcccccc
Confidence 56799999999999999999999999998876543 22211 11 1368899999999999999999955555555
Q ss_pred EEEEE
Q psy9145 102 FKTDF 106 (111)
Q Consensus 102 ~~l~v 106 (111)
..|.|
T Consensus 321 aev~V 325 (1381)
T KOG4221|consen 321 AEVTV 325 (1381)
T ss_pred eEEEE
Confidence 54444
No 114
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.90 E-value=1.1e-07 Score=50.96 Aligned_cols=84 Identities=14% Similarity=0.183 Sum_probs=54.5
Q ss_pred cCCeEEEEeEEcccC------CCeEEEEECCE----E--ec-cccce-e----e-EEeEec-CcceEEEEEEcCCCCCCC
Q psy9145 25 LGHKIVFICMAKGKP------RPHITWFKDGV----E--LY-AHMYV-N----L-HEWHYG-TDRIKSKIEIDPATQMDA 84 (111)
Q Consensus 25 ~g~~~~l~C~~~~~p------~p~i~w~~~g~----~--~~-~~~~~-~----~-~~~~~~-~~~~~~~l~i~~~~~~~~ 84 (111)
.|+.+.|.|.....| ...+.|++... . +. ..... . . .+.... ......+|.|.+++..|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 489999999986542 35699998431 1 00 00000 0 0 011111 111235799999999999
Q ss_pred EEEEEEeecCCceeeEEEEEEEEE
Q psy9145 85 GIYECYADNMYNVDTRTFKTDFSI 108 (111)
Q Consensus 85 g~y~C~~~n~~g~~~~~~~l~v~~ 108 (111)
|.|.|.+.+..+.....+.|.|..
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEEE
Confidence 999999999999888888888764
No 115
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.89 E-value=1.7e-07 Score=50.71 Aligned_cols=84 Identities=20% Similarity=0.311 Sum_probs=54.9
Q ss_pred cCCeEEEEeEEcccC----------CCeEEEEEC--CEEecc----cccee----e-EEeEe---cCcceEEEEEEcCCC
Q psy9145 25 LGHKIVFICMAKGKP----------RPHITWFKD--GVELYA----HMYVN----L-HEWHY---GTDRIKSKIEIDPAT 80 (111)
Q Consensus 25 ~g~~~~l~C~~~~~p----------~p~i~w~~~--g~~~~~----~~~~~----~-~~~~~---~~~~~~~~l~i~~~~ 80 (111)
.|+++.|.|.....+ ...+.|++. ++.... ..... . .+... ........|.|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 488999999986543 245999984 222110 00000 0 01111 112234679999999
Q ss_pred CCCCEEEEEEeecCCceeeEEEEEEEEE
Q psy9145 81 QMDAGIYECYADNMYNVDTRTFKTDFSI 108 (111)
Q Consensus 81 ~~~~g~y~C~~~n~~g~~~~~~~l~v~~ 108 (111)
..|.|.|.|.+..........+.|.|..
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 9999999999999888888888888764
No 116
>PHA02785 IL-beta-binding protein; Provisional
Probab=98.87 E-value=2.1e-08 Score=63.70 Aligned_cols=76 Identities=22% Similarity=0.351 Sum_probs=56.1
Q ss_pred eeecCCeEEEEeEE-----cccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCc
Q psy9145 22 LSVLGHKIVFICMA-----KGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN 96 (111)
Q Consensus 22 ~~~~g~~~~l~C~~-----~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g 96 (111)
.+.+|+.+.+.|.. .|.|.+.+.|++++..... ... .... ..+.+..+...|+|.|.|.+.|..|
T Consensus 37 ~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~~--~~~-----~~~g---~~l~i~~~~~~DsG~Y~C~a~N~~g 106 (326)
T PHA02785 37 MELENEPVILPCPQINTLSSGYNILDILWEKRGADNDR--IIP-----IDNG---SNMLILNPTQSDSGIYICITKNETY 106 (326)
T ss_pred hhhcCCCEEEECCCccccccCCCCceEEEEECCCccce--EEE-----ccCC---ceEEEcccCcccCeEEEEEEECCCc
Confidence 44689999999996 6888899999998742111 000 1111 2467888889999999999999998
Q ss_pred eeeEEEEEEEE
Q psy9145 97 VDTRTFKTDFS 107 (111)
Q Consensus 97 ~~~~~~~l~v~ 107 (111)
....++.|.|.
T Consensus 107 ~~~~s~~L~V~ 117 (326)
T PHA02785 107 CDMMSLNLTIV 117 (326)
T ss_pred ceEEEEEEEEE
Confidence 87777777664
No 117
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.86 E-value=1.9e-07 Score=50.46 Aligned_cols=84 Identities=18% Similarity=0.238 Sum_probs=53.5
Q ss_pred cCCeEEEEeEEcccC-------CCeEEEEECC-----EEec----ccc--------ceeeEEeEecCcceEEEEEEcCCC
Q psy9145 25 LGHKIVFICMAKGKP-------RPHITWFKDG-----VELY----AHM--------YVNLHEWHYGTDRIKSKIEIDPAT 80 (111)
Q Consensus 25 ~g~~~~l~C~~~~~p-------~p~i~w~~~g-----~~~~----~~~--------~~~~~~~~~~~~~~~~~l~i~~~~ 80 (111)
.|+.+.|.|.....| .+.+.|.+.. .... ... ..+.............+|.|.+++
T Consensus 1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~ 80 (110)
T cd05902 1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR 80 (110)
T ss_pred CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence 378899999965332 3679998741 1110 000 001111111112235689999999
Q ss_pred CCCCEEEEEEeecCCceeeEEEEEEEEE
Q psy9145 81 QMDAGIYECYADNMYNVDTRTFKTDFSI 108 (111)
Q Consensus 81 ~~~~g~y~C~~~n~~g~~~~~~~l~v~~ 108 (111)
..|.|.|.|.+.......+..+.|.|..
T Consensus 81 ~~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 81 YSDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred HHHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 9999999999999777778888887764
No 118
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.86 E-value=4.3e-08 Score=51.59 Aligned_cols=73 Identities=15% Similarity=0.236 Sum_probs=51.1
Q ss_pred eeecCCeEEEEeEE-c----ccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCc
Q psy9145 22 LSVLGHKIVFICMA-K----GKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN 96 (111)
Q Consensus 22 ~~~~g~~~~l~C~~-~----~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g 96 (111)
.+..|....+.|.- . ..+.|.+.||+++..+...... ... +.. ...|.+..+...|+|.|.|.+.+..|
T Consensus 6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~-~~~--~~~---~~~L~I~~v~~~D~G~YtC~~~~~~~ 79 (95)
T cd05897 6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEK-FYS--LKG---STYLHIIDVSLNDSGYYTCKLQFTHE 79 (95)
T ss_pred EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcc-eEe--cCC---CCEEEEEEcChhhCEEEEEEEEEeeC
Confidence 44678899999973 2 2356789999999876533211 110 011 13699999999999999999999876
Q ss_pred eeeE
Q psy9145 97 VDTR 100 (111)
Q Consensus 97 ~~~~ 100 (111)
...-
T Consensus 80 g~~y 83 (95)
T cd05897 80 GKKY 83 (95)
T ss_pred CEEE
Confidence 5533
No 119
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.85 E-value=1.8e-07 Score=49.61 Aligned_cols=36 Identities=17% Similarity=0.330 Sum_probs=31.6
Q ss_pred EEEEEEcCCCCCCCEEEEEEeecCCceeeEEEEEEE
Q psy9145 71 KSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDF 106 (111)
Q Consensus 71 ~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v 106 (111)
..+|.|.+++..|.|.|.|.+.+..+.....+.|.|
T Consensus 64 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 64 SVALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV 99 (100)
T ss_pred cEEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEEE
Confidence 467999999999999999999998888777777776
No 120
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.84 E-value=1.6e-07 Score=51.18 Aligned_cols=81 Identities=15% Similarity=0.252 Sum_probs=50.9
Q ss_pred eeecCCeEEEEeEEccc----CCCeEEEEE---------------CCEEeccc-----cceeeEEeEecCcceEEEEEEc
Q psy9145 22 LSVLGHKIVFICMAKGK----PRPHITWFK---------------DGVELYAH-----MYVNLHEWHYGTDRIKSKIEID 77 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~----p~p~i~w~~---------------~g~~~~~~-----~~~~~~~~~~~~~~~~~~l~i~ 77 (111)
.+..|+.+.|.|..... ....+.|.. +|+..... .+..+. ........++.|.
T Consensus 9 ~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~---g~~~~~daSI~I~ 85 (116)
T cd05879 9 YGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWV---GNPSRKDGSIVIH 85 (116)
T ss_pred EEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEe---CCCCcCeeEEEEc
Confidence 56789999999998653 235799932 22221100 011111 1112234689999
Q ss_pred CCCCCCCEEEEEEeecCCceeeEEEEEE
Q psy9145 78 PATQMDAGIYECYADNMYNVDTRTFKTD 105 (111)
Q Consensus 78 ~~~~~~~g~y~C~~~n~~g~~~~~~~l~ 105 (111)
+++..|.|.|.|.+.|..+.......+.
T Consensus 86 nv~~sD~G~Y~C~v~n~p~~~~~~~~~~ 113 (116)
T cd05879 86 NLDYTDNGTFTCDVKNPPDIVGKSSQVT 113 (116)
T ss_pred cCCcccCEEEEEEEEcCCCcCCceeEEE
Confidence 9999999999999999877554444333
No 121
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.80 E-value=9.4e-08 Score=47.55 Aligned_cols=61 Identities=31% Similarity=0.653 Sum_probs=40.8
Q ss_pred cCCeEEEEeEEcccC-CCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeec
Q psy9145 25 LGHKIVFICMAKGKP-RPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADN 93 (111)
Q Consensus 25 ~g~~~~l~C~~~~~p-~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n 93 (111)
.+..+.|.|.+.+.+ .+.+.|+ ........ .........+.|.+..+...|.|.|.|.+.|
T Consensus 14 ~~~~~~l~C~~~~~~~~~~~~W~-~~~~~~~~-------~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 14 SGGSVTLTCSAEGGPPPPSISWY-DSNPSFNS-------NSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp TTEEEEEEEEESSEESSEEEEEE-TEEEEEEE-------EEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred eceeEEEEEEEccccCCeEEEEE-ecCCceee-------eeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 444499999998877 7789999 11110000 0011122246899999999999999999986
No 122
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.80 E-value=5e-08 Score=59.06 Aligned_cols=85 Identities=18% Similarity=0.343 Sum_probs=55.9
Q ss_pred eeecCCeEEEEeEEcccC-----------CCeEEEEECCEEeccc---cceeeEEeEecC-cceEEEEEEcCCCCCCCEE
Q psy9145 22 LSVLGHKIVFICMAKGKP-----------RPHITWFKDGVELYAH---MYVNLHEWHYGT-DRIKSKIEIDPATQMDAGI 86 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p-----------~p~i~w~~~g~~~~~~---~~~~~~~~~~~~-~~~~~~l~i~~~~~~~~g~ 86 (111)
.+.+|+.+.|.|.+.+.+ .+.+.|++.+....-. .+.......... ......|.|.+++..|+|.
T Consensus 33 ~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~DsG~ 112 (227)
T PHA02826 33 YAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDEGI 112 (227)
T ss_pred EecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHCEE
Confidence 567999999999986643 3589999976432110 000000000000 0012479999999999999
Q ss_pred EEEEeecCCceeeEEEEEEE
Q psy9145 87 YECYADNMYNVDTRTFKTDF 106 (111)
Q Consensus 87 y~C~~~n~~g~~~~~~~l~v 106 (111)
|.|.+.|..+.....+.|.|
T Consensus 113 Y~C~a~N~~~~~~~~i~L~V 132 (227)
T PHA02826 113 YICTISSGNICEESTIRLTF 132 (227)
T ss_pred EEEEEEECCcceEEEEEEEE
Confidence 99999998887777776655
No 123
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.74 E-value=1.2e-06 Score=47.78 Aligned_cols=38 Identities=24% Similarity=0.277 Sum_probs=34.1
Q ss_pred EEEEEEcCCCCCCCEEEEEEeecCCceeeEEEEEEEEE
Q psy9145 71 KSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFSI 108 (111)
Q Consensus 71 ~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~ 108 (111)
..+|.|.+++..|.|.|.|.+.+.....+..+.|.|..
T Consensus 78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 78 DASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred ceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 46899999999999999999999999888888888764
No 124
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.71 E-value=1.2e-06 Score=44.76 Aligned_cols=77 Identities=22% Similarity=0.238 Sum_probs=48.9
Q ss_pred EEEEeEEc-ccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCce-eeEEEEEEE
Q psy9145 29 IVFICMAK-GKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV-DTRTFKTDF 106 (111)
Q Consensus 29 ~~l~C~~~-~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~-~~~~~~l~v 106 (111)
+.|.|.+. +.|.+.|.|++++..+...... ...........++|.+..-+..|...|.|.+.|..-. ...++.|.|
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~--~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V 79 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTV--EETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEV 79 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccc--eeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEE
Confidence 57899986 5677889999999888654221 0011112223456777666666777899999986643 333445544
Q ss_pred E
Q psy9145 107 S 107 (111)
Q Consensus 107 ~ 107 (111)
.
T Consensus 80 ~ 80 (82)
T cd05883 80 Q 80 (82)
T ss_pred E
Confidence 3
No 125
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.70 E-value=1.5e-06 Score=45.80 Aligned_cols=68 Identities=15% Similarity=0.241 Sum_probs=47.6
Q ss_pred eeecCCeEEEEeEEcccCCCeEEEEECCEEec--------cccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeec
Q psy9145 22 LSVLGHKIVFICMAKGKPRPHITWFKDGVELY--------AHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADN 93 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p~i~w~~~g~~~~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n 93 (111)
.+.+|+.+.|.|.........+.|++.+..+. ...++... .. .....+|.|..++..|.|.|.|.+..
T Consensus 8 tv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~--~~--~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 8 TVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLV--NF--SSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred EEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEE--eC--CCCEEEEEECcCCcccCEEEEEEEEc
Confidence 56799999999999887777788987653321 11122211 11 12235799999999999999998876
No 126
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.70 E-value=4.9e-07 Score=48.57 Aligned_cols=72 Identities=14% Similarity=0.188 Sum_probs=49.0
Q ss_pred eeecCCeEEEEeEEcccCCCeEEEEECCE--Ee---c---------cccceeeEEeEecCcceEEEEEEcCCCCCCCEEE
Q psy9145 22 LSVLGHKIVFICMAKGKPRPHITWFKDGV--EL---Y---------AHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIY 87 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p~i~w~~~g~--~~---~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y 87 (111)
.+.+|+.+.|.|...+.+.+.+.|++... .. . ...+..+. .........|.|.+++..|+|.|
T Consensus 9 ~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~---~~~~~~~~~L~I~~~~~~DsG~Y 85 (109)
T cd04983 9 SVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSAT---LDKSRKSSSLHISAAQLSDSAVY 85 (109)
T ss_pred EEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEE---EcccCCEEEEEECCCCHHHCEEE
Confidence 56899999999999877778899997421 00 0 00111111 11122346899999999999999
Q ss_pred EEEeecCCc
Q psy9145 88 ECYADNMYN 96 (111)
Q Consensus 88 ~C~~~n~~g 96 (111)
.|.+.+..+
T Consensus 86 ~C~~~~~~~ 94 (109)
T cd04983 86 FCALSESGG 94 (109)
T ss_pred EEEEecCCC
Confidence 999987643
No 127
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.70 E-value=6.7e-07 Score=45.98 Aligned_cols=75 Identities=13% Similarity=0.232 Sum_probs=49.3
Q ss_pred eeecCCeEEEEeEEcccCC--CeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceee
Q psy9145 22 LSVLGHKIVFICMAKGKPR--PHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT 99 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~--p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~ 99 (111)
.+..|+++.|.|.....+. +.+.|...+...-.... ...-+|.+..++..|+|.|.|.+....-..
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~~-----------~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~- 77 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQILN-----------QDKKTLNLVQLGPNDSGTWDCIVSVNSSEK- 77 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCccEEEeCCCCccceecc-----------CCccEEEeceeCcccCCEEEEEEEECceEE-
Confidence 4569999999999965444 48999864432211000 001378999999999999999997553333
Q ss_pred EEEEEEEEEE
Q psy9145 100 RTFKTDFSIT 109 (111)
Q Consensus 100 ~~~~l~v~~~ 109 (111)
.+.+.|.++
T Consensus 78 -~~~~~V~Vl 86 (88)
T cd07694 78 -TLKLDIKVL 86 (88)
T ss_pred -EEEeeEEEE
Confidence 444455544
No 128
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.69 E-value=6.9e-07 Score=47.08 Aligned_cols=79 Identities=13% Similarity=0.106 Sum_probs=48.8
Q ss_pred CeEEEEeEEcccC---CCeEEEEECCEE----ecc---c------cceeeEEeEecC-cceEEEEEEcCCCCCCCEEEEE
Q psy9145 27 HKIVFICMAKGKP---RPHITWFKDGVE----LYA---H------MYVNLHEWHYGT-DRIKSKIEIDPATQMDAGIYEC 89 (111)
Q Consensus 27 ~~~~l~C~~~~~p---~p~i~w~~~g~~----~~~---~------~~~~~~~~~~~~-~~~~~~l~i~~~~~~~~g~y~C 89 (111)
+.+.|.|.....+ ...+.|++.... +.. . ..... +..+.. ......|.|.+++..|+|.|.|
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~-R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C 79 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEG-RVSFLNSSLEDATISISNLRLEDEGNYIC 79 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCc-eEEEeCCCCCceEEEEccCCcccCEEEEE
Confidence 4688999986544 346999984321 100 0 00000 000111 1124689999999999999999
Q ss_pred Eeec-CCceeeEEEEEEE
Q psy9145 90 YADN-MYNVDTRTFKTDF 106 (111)
Q Consensus 90 ~~~n-~~g~~~~~~~l~v 106 (111)
.+.. ..|.....+.|.|
T Consensus 80 ~v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 80 EFATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEEeCCCCcEEEEEEEEe
Confidence 9874 6777887777766
No 129
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.64 E-value=8.5e-07 Score=45.43 Aligned_cols=69 Identities=22% Similarity=0.325 Sum_probs=42.6
Q ss_pred EEEEeEEcc-cCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCcee
Q psy9145 29 IVFICMAKG-KPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD 98 (111)
Q Consensus 29 ~~l~C~~~~-~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 98 (111)
+.|.|.+.+ .|.+.+.|++++..+.... ..............+.+.+......+.+.|.|.+.+.....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~ 71 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS 71 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence 578999965 5888999999998775322 11110000111223455555555556789999999877653
No 130
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.64 E-value=2.7e-07 Score=48.32 Aligned_cols=73 Identities=25% Similarity=0.444 Sum_probs=47.5
Q ss_pred cCCeEEEEeEEccc-CC-CeEEEEECCEEeccccc-eeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCce
Q psy9145 25 LGHKIVFICMAKGK-PR-PHITWFKDGVELYAHMY-VNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV 97 (111)
Q Consensus 25 ~g~~~~l~C~~~~~-p~-p~i~w~~~g~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~ 97 (111)
.|+.+.|.|.+.|. |. ..+.|+++|..+..... ..............+.|.+......+.+.|.|.+.+....
T Consensus 12 ~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 12 LGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred cCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 68999999999987 53 57999999987754332 1111111111222345666655556899999999886653
No 131
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.63 E-value=6.9e-07 Score=47.90 Aligned_cols=84 Identities=15% Similarity=0.214 Sum_probs=50.0
Q ss_pred eeecCCeEEEEeEEcccCCCeEEEEECCE-----Eecc-cc--ceeeEEeEecCc-ce--EEEEEEcCCCCCCCEEEEEE
Q psy9145 22 LSVLGHKIVFICMAKGKPRPHITWFKDGV-----ELYA-HM--YVNLHEWHYGTD-RI--KSKIEIDPATQMDAGIYECY 90 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p~i~w~~~g~-----~~~~-~~--~~~~~~~~~~~~-~~--~~~l~i~~~~~~~~g~y~C~ 90 (111)
.+.+|+++.|.|.........+.|++... .+.. .. ........+... .. +++|.|.+++..|.|.|.|.
T Consensus 9 ~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~~~ 88 (105)
T cd05774 9 QVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYTLQ 88 (105)
T ss_pred cccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEEEE
Confidence 55799999999976444344799998421 1110 00 000000000010 00 24799999999999999999
Q ss_pred eecCC-ceeeEEEEEE
Q psy9145 91 ADNMY-NVDTRTFKTD 105 (111)
Q Consensus 91 ~~n~~-g~~~~~~~l~ 105 (111)
+.+.. ......+.|.
T Consensus 89 v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 89 TITTNFQVEQATVHLQ 104 (105)
T ss_pred EEeCCccEEEEEEEEE
Confidence 99877 4455555554
No 132
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.63 E-value=1.7e-06 Score=45.99 Aligned_cols=36 Identities=17% Similarity=0.175 Sum_probs=29.8
Q ss_pred EEEEEEcCCCCCCCEEEEEEeec-CCceeeEEEEEEE
Q psy9145 71 KSKIEIDPATQMDAGIYECYADN-MYNVDTRTFKTDF 106 (111)
Q Consensus 71 ~~~l~i~~~~~~~~g~y~C~~~n-~~g~~~~~~~l~v 106 (111)
...|.|.+++..|.|.|.|.+.+ ..|..+..+.|.|
T Consensus 63 ~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 63 DGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV 99 (100)
T ss_pred ceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence 46799999999999999999987 7776666666665
No 133
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.63 E-value=5.1e-07 Score=47.72 Aligned_cols=83 Identities=16% Similarity=0.157 Sum_probs=51.2
Q ss_pred ecCCeEEEEeEEcc-cCCCeEEEEECCEEeccccc-------eeeE---EeEecCcceEEEEEEcCCCCCCCEEEEEEee
Q psy9145 24 VLGHKIVFICMAKG-KPRPHITWFKDGVELYAHMY-------VNLH---EWHYGTDRIKSKIEIDPATQMDAGIYECYAD 92 (111)
Q Consensus 24 ~~g~~~~l~C~~~~-~p~p~i~w~~~g~~~~~~~~-------~~~~---~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~ 92 (111)
..|+.+.|.|.... .....+.|++....+..... .... ..+..-.....+|.|.+++..|+|.|.|...
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 37999999998754 34456999986432221110 0000 0011111223679999999999999999999
Q ss_pred cCCcee-eEEEEEEE
Q psy9145 93 NMYNVD-TRTFKTDF 106 (111)
Q Consensus 93 n~~g~~-~~~~~l~v 106 (111)
+..|.. ...+.|.|
T Consensus 82 ~~~~~~~~~~f~L~v 96 (97)
T cd05775 82 TKNGVTITKEFTLHI 96 (97)
T ss_pred cCCCCeEEEEEEEEe
Confidence 877654 44555554
No 134
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.62 E-value=1.5e-06 Score=44.67 Aligned_cols=68 Identities=24% Similarity=0.302 Sum_probs=43.4
Q ss_pred EEEEeEEcc-cCCCeEEEEECCEEeccccceeeEEeEec-CcceEEEEEEcCCCCCCCEEEEEEeecCCce
Q psy9145 29 IVFICMAKG-KPRPHITWFKDGVELYAHMYVNLHEWHYG-TDRIKSKIEIDPATQMDAGIYECYADNMYNV 97 (111)
Q Consensus 29 ~~l~C~~~~-~p~p~i~w~~~g~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~ 97 (111)
+.|.|.+.+ +|.+.+.|+++|..+..... ........ .....+.+.+......+...|.|.+.+....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~ 71 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH 71 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence 578999976 58889999999987754321 11111011 1122345666555566778999999987754
No 135
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.60 E-value=8.7e-07 Score=46.11 Aligned_cols=77 Identities=16% Similarity=0.166 Sum_probs=48.4
Q ss_pred CCeEEEEeEEcccCCCeEEEEECCEEecccc-------ceee------EEeEecCcceEEEEEEcCCCCCCCEEEEEEee
Q psy9145 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHM-------YVNL------HEWHYGTDRIKSKIEIDPATQMDAGIYECYAD 92 (111)
Q Consensus 26 g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~-------~~~~------~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~ 92 (111)
|+.+.|.|.........+.|++......... .... .+..... ..+|.|.+++..|+|.|.|...
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~---~~sL~I~~l~~~DsG~Y~c~v~ 77 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYP---NGSLLIQNLTKEDSGTYTLQII 77 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcC---CceEEEccCCchhcEEEEEEEE
Confidence 7889999988765566799998542211100 0000 0111111 1579999999999999999999
Q ss_pred cCCce-eeEEEEEE
Q psy9145 93 NMYNV-DTRTFKTD 105 (111)
Q Consensus 93 n~~g~-~~~~~~l~ 105 (111)
...+. ....+.|.
T Consensus 78 ~~~~~~~~~~~~l~ 91 (92)
T cd05741 78 STNGVTENAKFFLR 91 (92)
T ss_pred cCCCcEEEEEEEEE
Confidence 87743 34445444
No 136
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.59 E-value=8.4e-07 Score=47.25 Aligned_cols=72 Identities=14% Similarity=0.219 Sum_probs=47.8
Q ss_pred eeecCCeEEEEeEEccc-CCCeEEEEECCE-----Eecc------------ccceeeEEeEecCcceEEEEEEcCCCCCC
Q psy9145 22 LSVLGHKIVFICMAKGK-PRPHITWFKDGV-----ELYA------------HMYVNLHEWHYGTDRIKSKIEIDPATQMD 83 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~-p~p~i~w~~~g~-----~~~~------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~ 83 (111)
.+..|+.+.|.|..... ....+.|++... .+.. ..+..... ........|.|.+++..|
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~sL~I~~v~~~D 78 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTR---DSSKSSFTLTISSLQPED 78 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEE---eccCCEEEEEECCCCHHH
Confidence 35689999999999765 567799998322 1100 01111111 111124579999999999
Q ss_pred CEEEEEEeecCCc
Q psy9145 84 AGIYECYADNMYN 96 (111)
Q Consensus 84 ~g~y~C~~~n~~g 96 (111)
.|.|.|.+.+..+
T Consensus 79 ~G~Y~C~v~~~~~ 91 (105)
T cd00099 79 SAVYYCAVSLSGG 91 (105)
T ss_pred CEEEEEEEecCCC
Confidence 9999999998765
No 137
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.58 E-value=4.3e-06 Score=44.37 Aligned_cols=35 Identities=14% Similarity=0.224 Sum_probs=30.8
Q ss_pred EEEEEcCCCCCCCEEEEEEeec-CCceeeEEEEEEE
Q psy9145 72 SKIEIDPATQMDAGIYECYADN-MYNVDTRTFKTDF 106 (111)
Q Consensus 72 ~~l~i~~~~~~~~g~y~C~~~n-~~g~~~~~~~l~v 106 (111)
++|.|.+++..|.|.|.|.+.+ +.|..+..+.|.|
T Consensus 63 aSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 63 GTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred ceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 6899999999999999999998 7887777777765
No 138
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.56 E-value=1.4e-06 Score=45.78 Aligned_cols=65 Identities=20% Similarity=0.374 Sum_probs=44.2
Q ss_pred eeecCCeEEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEee
Q psy9145 22 LSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYAD 92 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~ 92 (111)
++..|++++|.|.... ..-.+.|+++|....... ... .......+.+.|..++..|+|.|.|...
T Consensus 11 vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~---~~~--~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 11 VVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLH---LYE--KHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred ccCCCCeEEEEEecCC-CCCEEEEEECCCCCCcee---ccc--ccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 5679999999998754 445689999875422110 000 0112224578999999999999999865
No 139
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.55 E-value=2.8e-06 Score=44.86 Aligned_cols=81 Identities=16% Similarity=0.092 Sum_probs=49.6
Q ss_pred CCeEEEEeEEcccCCC-eEEEEECCE----Eec-c---cc-----ceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEe
Q psy9145 26 GHKIVFICMAKGKPRP-HITWFKDGV----ELY-A---HM-----YVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYA 91 (111)
Q Consensus 26 g~~~~l~C~~~~~p~p-~i~w~~~g~----~~~-~---~~-----~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~ 91 (111)
|+.+.|.|........ .+.|++... .+. . .. ...-...........++|.|.+++.+|.|.|.|..
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 7889999987544332 599987321 111 0 00 00000000111222467999999999999999987
Q ss_pred e-cCCceeeEEEEEEE
Q psy9145 92 D-NMYNVDTRTFKTDF 106 (111)
Q Consensus 92 ~-n~~g~~~~~~~l~v 106 (111)
. .+.|..+..+.|.|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 6 57777777777766
No 140
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.55 E-value=1.4e-06 Score=44.76 Aligned_cols=69 Identities=22% Similarity=0.360 Sum_probs=42.8
Q ss_pred EEEEeEEcc-cCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCce
Q psy9145 29 IVFICMAKG-KPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV 97 (111)
Q Consensus 29 ~~l~C~~~~-~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~ 97 (111)
+.|.|.+.+ .|...+.|+++|..+...................+.+.+..-...+...|.|.+.+..-.
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 578999976 677789999999886533211111100011223345666655556677899999986654
No 141
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.55 E-value=9.1e-07 Score=47.71 Aligned_cols=73 Identities=15% Similarity=0.301 Sum_probs=46.7
Q ss_pred eeecCCeEEEEeEEcccCCCeEEEEECC--EEecc---cc--cee------eEEeEecCc-ceEEEEEEcCCCCCCCEEE
Q psy9145 22 LSVLGHKIVFICMAKGKPRPHITWFKDG--VELYA---HM--YVN------LHEWHYGTD-RIKSKIEIDPATQMDAGIY 87 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p~i~w~~~g--~~~~~---~~--~~~------~~~~~~~~~-~~~~~l~i~~~~~~~~g~y 87 (111)
.+.+|+.+.|.|...+ +.+.+.||+.. ..+.. .. ... ..++..... .....|.|..++.+|+|.|
T Consensus 9 ~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Dsg~Y 87 (110)
T cd05899 9 IKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDSAVY 87 (110)
T ss_pred EEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhCEEE
Confidence 5689999999999877 66789999842 11110 00 000 001111111 1235799999999999999
Q ss_pred EEEeecCC
Q psy9145 88 ECYADNMY 95 (111)
Q Consensus 88 ~C~~~n~~ 95 (111)
.|.+.+..
T Consensus 88 ~Ca~~~~~ 95 (110)
T cd05899 88 LCASSLGG 95 (110)
T ss_pred EEEeeCCC
Confidence 99988653
No 142
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.51 E-value=9.7e-07 Score=47.31 Aligned_cols=73 Identities=14% Similarity=0.195 Sum_probs=45.5
Q ss_pred eeecCCeEEEEeEEcccC-CCeEEEEECC--EE---ecccc-c---eeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEe
Q psy9145 22 LSVLGHKIVFICMAKGKP-RPHITWFKDG--VE---LYAHM-Y---VNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYA 91 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p-~p~i~w~~~g--~~---~~~~~-~---~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~ 91 (111)
.+.+|+.+.|.|...+.. ...+.|++.. .. +.... . ....++..........|.|.+++.+|.|.|.|.+
T Consensus 11 ~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~ 90 (106)
T cd04980 11 SVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVYYCQQ 90 (106)
T ss_pred EECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEEEEEE
Confidence 568999999999987655 5679999732 11 11000 0 0000111111222356999999999999999988
Q ss_pred ecC
Q psy9145 92 DNM 94 (111)
Q Consensus 92 ~n~ 94 (111)
.+.
T Consensus 91 ~~~ 93 (106)
T cd04980 91 YGT 93 (106)
T ss_pred eCC
Confidence 653
No 143
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.48 E-value=4.2e-06 Score=45.61 Aligned_cols=76 Identities=24% Similarity=0.287 Sum_probs=46.0
Q ss_pred eeecCCeEEEEeEEcccC----CCeEEEEEC----CEE--ec-cccce------eeE-EeE--ecCcceEEEEEEcCCCC
Q psy9145 22 LSVLGHKIVFICMAKGKP----RPHITWFKD----GVE--LY-AHMYV------NLH-EWH--YGTDRIKSKIEIDPATQ 81 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p----~p~i~w~~~----g~~--~~-~~~~~------~~~-~~~--~~~~~~~~~l~i~~~~~ 81 (111)
.+.+|+.+.|.|.....+ ...+.|++. +.. +. ..... +.. +.. ........+|.|..++.
T Consensus 9 ~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~v~~ 88 (115)
T cd05880 9 EAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQLQP 88 (115)
T ss_pred EEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEeeCCh
Confidence 567999999999975433 235999741 111 10 00000 000 000 01112245799999999
Q ss_pred CCCEEEEEEeecCCce
Q psy9145 82 MDAGIYECYADNMYNV 97 (111)
Q Consensus 82 ~~~g~y~C~~~n~~g~ 97 (111)
.|.|.|.|.+.|....
T Consensus 89 ~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 89 TDNGTYTCQVKNPPDV 104 (115)
T ss_pred hhCEEEEEEEEeCCCC
Confidence 9999999999987664
No 144
>KOG4194|consensus
Probab=98.48 E-value=9.4e-07 Score=59.79 Aligned_cols=78 Identities=24% Similarity=0.488 Sum_probs=60.8
Q ss_pred eeecCCeEEEEeEEcccCC-CeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeE
Q psy9145 22 LSVLGHKIVFICMAKGKPR-PHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTR 100 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~-p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~ 100 (111)
.+..|+...+.|.+.+.|. |++.|+++.+++....++... .. ..-+.+......|.|.|.|...+..|....
T Consensus 717 ~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~-----d~--dQllvv~~~~~~daG~yTcem~~~~~~~~~ 789 (873)
T KOG4194|consen 717 LVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITERHTFP-----DG--DQLLVVKENLVEDAGIYTCEMSNTLGTERI 789 (873)
T ss_pred EEEecceEEEEEecCCCCCCccccccCCCCceEEeecccCC-----CC--CeEEEEEehhhhhcceEEEEEEeeccceee
Confidence 7789999999999999888 999999988777655443321 11 235777777889999999999999998777
Q ss_pred EEEEEE
Q psy9145 101 TFKTDF 106 (111)
Q Consensus 101 ~~~l~v 106 (111)
.+.+.+
T Consensus 790 ~i~l~~ 795 (873)
T KOG4194|consen 790 HICLLV 795 (873)
T ss_pred EEEEEE
Confidence 665544
No 145
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.47 E-value=2.3e-06 Score=45.20 Aligned_cols=72 Identities=11% Similarity=0.160 Sum_probs=44.9
Q ss_pred eecCCeEEEEeEEccc--CCCeEEEEECC--EEec---ccc----ceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEe
Q psy9145 23 SVLGHKIVFICMAKGK--PRPHITWFKDG--VELY---AHM----YVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYA 91 (111)
Q Consensus 23 ~~~g~~~~l~C~~~~~--p~p~i~w~~~g--~~~~---~~~----~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~ 91 (111)
+.+|+.+.|.|..... ....+.||+.. ..+. ... .....++..........|.|..++..|+|.|.|-+
T Consensus 3 v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~ 82 (98)
T cd04984 3 VSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQV 82 (98)
T ss_pred cCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEEE
Confidence 5689999999998654 45679999732 1111 000 00001111122223457999999999999999988
Q ss_pred ecC
Q psy9145 92 DNM 94 (111)
Q Consensus 92 ~n~ 94 (111)
.+.
T Consensus 83 ~~~ 85 (98)
T cd04984 83 WDS 85 (98)
T ss_pred ccC
Confidence 753
No 146
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.47 E-value=5.7e-06 Score=44.32 Aligned_cols=85 Identities=11% Similarity=0.152 Sum_probs=51.9
Q ss_pred eeecCCeEEEEeEEc-ccCCCeEEEEECCE-----Eec-c-cc-ceeeE--------EeEecCcceEEEEEEcCCCCCCC
Q psy9145 22 LSVLGHKIVFICMAK-GKPRPHITWFKDGV-----ELY-A-HM-YVNLH--------EWHYGTDRIKSKIEIDPATQMDA 84 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~-~~p~p~i~w~~~g~-----~~~-~-~~-~~~~~--------~~~~~~~~~~~~l~i~~~~~~~~ 84 (111)
.+.+|+.+.|.|... ......+.|++... .+. . .. ..... ...........+|.|.+++..|.
T Consensus 12 ~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~Ds 91 (114)
T PF07686_consen 12 TVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPSDS 91 (114)
T ss_dssp EEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGGGE
T ss_pred EEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcCcC
Confidence 568999999999998 44556799997211 111 0 00 00000 00111112245799999999999
Q ss_pred EEEEEEeecC-CceeeEEEEEEE
Q psy9145 85 GIYECYADNM-YNVDTRTFKTDF 106 (111)
Q Consensus 85 g~y~C~~~n~-~g~~~~~~~l~v 106 (111)
|.|.|.+... .......+.|.|
T Consensus 92 G~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 92 GTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp EEEEEEEEESSEEEEEEEEEEEE
T ss_pred EEEEEEEEECCCCEECCcEEEEC
Confidence 9999998887 334444455544
No 147
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.44 E-value=9.3e-06 Score=39.03 Aligned_cols=66 Identities=33% Similarity=0.561 Sum_probs=43.9
Q ss_pred EEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCc
Q psy9145 30 VFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN 96 (111)
Q Consensus 30 ~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g 96 (111)
.+.|...+.+...+.|++++......... ..............+.+..++..|.|.|.|.+.+..+
T Consensus 2 ~l~C~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 67 (74)
T cd00096 2 TLTCLASGPPPPTITWLKNGKPLPSSVLT-RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAG 67 (74)
T ss_pred EEEEEecCCCCCcEEEEECCEECCCcccE-EeccccCcceeEEEEEECccCcccCcEEEEEEecCcC
Confidence 57899988677889999977654432211 0000111222245788999999999999999988663
No 148
>KOG4222|consensus
Probab=98.42 E-value=1.6e-06 Score=61.86 Aligned_cols=92 Identities=22% Similarity=0.410 Sum_probs=58.5
Q ss_pred cccceeecc---eeecCCeEEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCC----C-CCCC
Q psy9145 13 SCQQVKYFP---LSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPA----T-QMDA 84 (111)
Q Consensus 13 ~~~~~~~~~---~~~~g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~----~-~~~~ 84 (111)
.++.+++-+ .+..++.+.|.|.+.|.|+|.+.|+++|....... ...+++..... +|.+..+ . ..|.
T Consensus 30 ~~p~iiehp~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e-~~shR~~lp~g----sLf~l~~ahg~~a~~d~ 104 (1281)
T KOG4222|consen 30 QPPRIIEHPHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGE-PGSHRFLLPDG----SLFLLRLAHGKKAGHDH 104 (1281)
T ss_pred CCCceEecchhhhccCCCCceeecCCCCCCCCceecccCCcccCCCC-CCCcceecCCc----cEEEEecccCCcccCCC
Confidence 344455444 55789999999999999999999999996443221 12222222222 2332222 2 2389
Q ss_pred EEEEEEeecCCcee-eEEEEEEEEEE
Q psy9145 85 GIYECYADNMYNVD-TRTFKTDFSIT 109 (111)
Q Consensus 85 g~y~C~~~n~~g~~-~~~~~l~v~~~ 109 (111)
|.|.|.+.|..|.. ++...|.+.++
T Consensus 105 G~y~cvasn~~g~avSr~a~L~vavl 130 (1281)
T KOG4222|consen 105 GVYSCVASNRLGEAVSRGASLIVAVL 130 (1281)
T ss_pred ceeEeeecCccceeeecCceEEEEEe
Confidence 99999999999965 34456665554
No 149
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.42 E-value=9.2e-06 Score=44.25 Aligned_cols=76 Identities=17% Similarity=0.252 Sum_probs=45.7
Q ss_pred eeecCCeEEEEeEEcccC----CCeEEEEECCE------Eec-c-ccc------eee-EEeE--ecCcceEEEEEEcCCC
Q psy9145 22 LSVLGHKIVFICMAKGKP----RPHITWFKDGV------ELY-A-HMY------VNL-HEWH--YGTDRIKSKIEIDPAT 80 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p----~p~i~w~~~g~------~~~-~-~~~------~~~-~~~~--~~~~~~~~~l~i~~~~ 80 (111)
.+..|+.+.|.|...... ...+.|++... .+. . ... .+. .+.. ........+|.|.+++
T Consensus 9 ~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 88 (116)
T cd05715 9 YAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIHNLQ 88 (116)
T ss_pred EEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEeeCC
Confidence 557999999999885432 24599986211 110 0 000 000 0000 0111223679999999
Q ss_pred CCCCEEEEEEeecCCce
Q psy9145 81 QMDAGIYECYADNMYNV 97 (111)
Q Consensus 81 ~~~~g~y~C~~~n~~g~ 97 (111)
..|.|.|.|.+.|.-..
T Consensus 89 ~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 89 FTDNGTYTCDVKNPPDI 105 (116)
T ss_pred cccCEEEEEEEEeCCCC
Confidence 99999999999987664
No 150
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.41 E-value=1.7e-06 Score=47.04 Aligned_cols=72 Identities=17% Similarity=0.294 Sum_probs=45.5
Q ss_pred eeecCCeEEEEeEEcc--cCCCeEEEEEC--CEEe---c-ccc--ce------eeEEeEecCcc--eEEEEEEcCCCCCC
Q psy9145 22 LSVLGHKIVFICMAKG--KPRPHITWFKD--GVEL---Y-AHM--YV------NLHEWHYGTDR--IKSKIEIDPATQMD 83 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~--~p~p~i~w~~~--g~~~---~-~~~--~~------~~~~~~~~~~~--~~~~l~i~~~~~~~ 83 (111)
.+.+|+.+.|.|...+ .+.+.+.|++. +..+ . ... .. ...++...... ....|.|.+++..|
T Consensus 9 ~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~D 88 (116)
T cd04982 9 TREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEKED 88 (116)
T ss_pred EeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCHHH
Confidence 5678999999999876 56778999983 2111 0 000 00 00011111111 24579999999999
Q ss_pred CEEEEEEeec
Q psy9145 84 AGIYECYADN 93 (111)
Q Consensus 84 ~g~y~C~~~n 93 (111)
+|.|.|.+..
T Consensus 89 sg~Y~C~~~~ 98 (116)
T cd04982 89 SATYYCAYWE 98 (116)
T ss_pred CEEEEEEEec
Confidence 9999998864
No 151
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.38 E-value=2e-05 Score=41.55 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=31.4
Q ss_pred EEEEEEcCCCCCCCEEEEEEe-ecCCceeeEEEEEEE
Q psy9145 71 KSKIEIDPATQMDAGIYECYA-DNMYNVDTRTFKTDF 106 (111)
Q Consensus 71 ~~~l~i~~~~~~~~g~y~C~~-~n~~g~~~~~~~l~v 106 (111)
.++|.|.+++..|.|.|.|.+ ..+.|..+.+..|.|
T Consensus 59 d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 59 DATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTV 95 (96)
T ss_pred ccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEE
Confidence 468999999999999999986 568888888888876
No 152
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=98.37 E-value=6.7e-06 Score=42.58 Aligned_cols=73 Identities=22% Similarity=0.407 Sum_probs=43.8
Q ss_pred CCeEEEEeEE-cccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCcee
Q psy9145 26 GHKIVFICMA-KGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD 98 (111)
Q Consensus 26 g~~~~l~C~~-~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 98 (111)
|+.+.+.|.+ .+.|.|.+.|+.++......................+.|.+..-+..+...+.|.+.+..-..
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~~ 87 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALSQ 87 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCCE
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccCC
Confidence 6799999987 578999999999887662111111110000111223456665544456788999999876544
No 153
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.35 E-value=1.6e-05 Score=42.27 Aligned_cols=73 Identities=12% Similarity=0.243 Sum_probs=46.7
Q ss_pred eecCCeEEEEeEEcc-cCCCe--EEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCcee
Q psy9145 23 SVLGHKIVFICMAKG-KPRPH--ITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD 98 (111)
Q Consensus 23 ~~~g~~~~l~C~~~~-~p~p~--i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 98 (111)
+.+|+.+.+.|.+.+ .|.+. +.||+++..+......... ........++.+..-+.++...|.|.+.+..+..
T Consensus 13 ~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~---~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~~ 88 (100)
T cd05755 13 QPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNT---KSPVNAPATITITVDREDHGANFSCETELDLRPE 88 (100)
T ss_pred ccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceecccc---CCCceeEEEEEEecchhhCCcEEEEEEEeccCcc
Confidence 469999999999965 66666 6999998877543211100 0111123456665444455568999999876643
No 154
>KOG4221|consensus
Probab=98.34 E-value=5.2e-06 Score=59.73 Aligned_cols=76 Identities=22% Similarity=0.349 Sum_probs=58.3
Q ss_pred ceeecceeecCCeEEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCC
Q psy9145 16 QVKYFPLSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY 95 (111)
Q Consensus 16 ~~~~~~~~~~g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 95 (111)
+..+...+..|+.+.|.|.+.+.+-|.+.|.++.+.+....++.... +..|.|..+...|.|.|+|.+.+..
T Consensus 145 ~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~lp--------sG~L~I~~~qp~d~g~yrc~vt~g~ 216 (1381)
T KOG4221|consen 145 LQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIVLP--------SGALEISGLQPSDTGEYRCVVTGGA 216 (1381)
T ss_pred cCccceeEecCCcEEEEEEEcCccCceeEEecccccccCCCcEEEcC--------CCcEEecccccCCCceEEEEEecCC
Confidence 33344477899999999999999989999999887665444332211 2479999999999999999999876
Q ss_pred ceee
Q psy9145 96 NVDT 99 (111)
Q Consensus 96 g~~~ 99 (111)
-...
T Consensus 217 ~~r~ 220 (1381)
T KOG4221|consen 217 SQRT 220 (1381)
T ss_pred cCCc
Confidence 6543
No 155
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.33 E-value=1.6e-05 Score=46.45 Aligned_cols=85 Identities=14% Similarity=0.155 Sum_probs=52.8
Q ss_pred eeecCCeEEEEeEEc-ccCCCeEEEEECCEEecc--ccceee-----EEeE-ecCcceEEEEEEcCCCCCCCEEEEEEee
Q psy9145 22 LSVLGHKIVFICMAK-GKPRPHITWFKDGVELYA--HMYVNL-----HEWH-YGTDRIKSKIEIDPATQMDAGIYECYAD 92 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~-~~p~p~i~w~~~g~~~~~--~~~~~~-----~~~~-~~~~~~~~~l~i~~~~~~~~g~y~C~~~ 92 (111)
.+.+|+.+.|.|... +...+.+.|++....+.. ...... .+.. .......+.+.|.+++.+|.|.|.|...
T Consensus 26 ~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F~ 105 (189)
T PHA02987 26 TVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIFN 105 (189)
T ss_pred EEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEEE
Confidence 568999999999984 656788999985322210 000000 0111 1111123679999999999999999877
Q ss_pred c-CCc-eeeEEEEEEE
Q psy9145 93 N-MYN-VDTRTFKTDF 106 (111)
Q Consensus 93 n-~~g-~~~~~~~l~v 106 (111)
- +.| ..+....|.|
T Consensus 106 tfp~G~~~~gt~CLtV 121 (189)
T PHA02987 106 TLLSKNNEKGVVCLNV 121 (189)
T ss_pred ecCCCCCceeEEEEEE
Confidence 5 445 4555555544
No 156
>KOG4222|consensus
Probab=98.23 E-value=2.1e-06 Score=61.31 Aligned_cols=78 Identities=24% Similarity=0.434 Sum_probs=60.7
Q ss_pred eeecCCeEEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEE
Q psy9145 22 LSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRT 101 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 101 (111)
.+..|..+.|.|.+.|.|.|.+.|.+++..++... +.... . +.++.+.+.+..|.|.|.|.+.|..|....+
T Consensus 236 ~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~r-y~i~~---d----~qtl~i~r~tp~deg~y~C~a~n~vG~l~as 307 (1281)
T KOG4222|consen 236 AVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSR-YSILD---D----TQTLRIDRVTPTDEGTYVCPAENLVGGLEAS 307 (1281)
T ss_pred eeecccccccccccCCCCCCceeeeccCCCCCccc-eeeee---c----cccccccccCCCcccceeeeccccccccccc
Confidence 66789999999999999999999998765554332 22211 1 1378889999999999999999999988777
Q ss_pred EEEEEE
Q psy9145 102 FKTDFS 107 (111)
Q Consensus 102 ~~l~v~ 107 (111)
..+.|.
T Consensus 308 a~ltV~ 313 (1281)
T KOG4222|consen 308 ATLTVQ 313 (1281)
T ss_pred cceEEe
Confidence 766654
No 157
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.17 E-value=6.4e-05 Score=39.69 Aligned_cols=34 Identities=18% Similarity=0.286 Sum_probs=28.4
Q ss_pred EEEEEEcCCCCCCCEEEEEEeec-CCceeeEEEEE
Q psy9145 71 KSKIEIDPATQMDAGIYECYADN-MYNVDTRTFKT 104 (111)
Q Consensus 71 ~~~l~i~~~~~~~~g~y~C~~~n-~~g~~~~~~~l 104 (111)
..+|.|.+++..|.|.|.|.+.. +.|..++.+.+
T Consensus 59 d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~ 93 (96)
T cd05889 59 DMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEV 93 (96)
T ss_pred ccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEE
Confidence 36899999999999999998864 68887777755
No 158
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.16 E-value=5.5e-05 Score=39.83 Aligned_cols=71 Identities=20% Similarity=0.191 Sum_probs=45.1
Q ss_pred eeecCCeEEEEeEEcc-cCCCeEEEEECCE-----Eec--------cccceeeEEeEecCcceEEEEEEcCCCCCCCEEE
Q psy9145 22 LSVLGHKIVFICMAKG-KPRPHITWFKDGV-----ELY--------AHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIY 87 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~-~p~p~i~w~~~g~-----~~~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y 87 (111)
.+.+|+.+.|.|.... .....+.|++... .+. ...+.... .........|.|..++.+|+|.|
T Consensus 3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~---~~~~~~~~~L~I~~v~~~DsG~Y 79 (98)
T cd05716 3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLT---DDPDNGVFTVTLNQLRKEDAGWY 79 (98)
T ss_pred EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEE---ecCCCCEEEEEEcCCCHHHCEEE
Confidence 4578999999999754 3456789997431 110 00111110 01112235799999999999999
Q ss_pred EEEeecCC
Q psy9145 88 ECYADNMY 95 (111)
Q Consensus 88 ~C~~~n~~ 95 (111)
.|.+....
T Consensus 80 ~C~~~~~~ 87 (98)
T cd05716 80 WCGVGDDG 87 (98)
T ss_pred EEEcccCC
Confidence 99877643
No 159
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.15 E-value=3e-05 Score=41.44 Aligned_cols=71 Identities=11% Similarity=0.207 Sum_probs=43.6
Q ss_pred eecCCeEEEEeEEcccCCCeEEEEECC----EEe---c-ccc--ce----e---eEEeEecCcceEEEEEEcCCCCCCCE
Q psy9145 23 SVLGHKIVFICMAKGKPRPHITWFKDG----VEL---Y-AHM--YV----N---LHEWHYGTDRIKSKIEIDPATQMDAG 85 (111)
Q Consensus 23 ~~~g~~~~l~C~~~~~p~p~i~w~~~g----~~~---~-~~~--~~----~---~~~~~~~~~~~~~~l~i~~~~~~~~g 85 (111)
+.+|+.+.|.|.........+.|++.. ..+ . ... .. . ..++..........|.|..++.+|+|
T Consensus 3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDsg 82 (104)
T cd05720 3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENEG 82 (104)
T ss_pred ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHCE
Confidence 468999999999865545669999832 111 1 000 00 0 01111111122357999999999999
Q ss_pred EEEEEeec
Q psy9145 86 IYECYADN 93 (111)
Q Consensus 86 ~y~C~~~n 93 (111)
.|.|-+.+
T Consensus 83 tY~Ca~~~ 90 (104)
T cd05720 83 YYFCSVAS 90 (104)
T ss_pred EEEEEEcc
Confidence 99997764
No 160
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.12 E-value=2.9e-05 Score=41.68 Aligned_cols=72 Identities=18% Similarity=0.344 Sum_probs=43.2
Q ss_pred eeecCCeEEEEeEEcccC-CCeEEEEECCEE-----ec-----c-ccce----ee--EEeEe--cCcceEEEEEEcCCCC
Q psy9145 22 LSVLGHKIVFICMAKGKP-RPHITWFKDGVE-----LY-----A-HMYV----NL--HEWHY--GTDRIKSKIEIDPATQ 81 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p-~p~i~w~~~g~~-----~~-----~-~~~~----~~--~~~~~--~~~~~~~~l~i~~~~~ 81 (111)
.+.+|+.+.|.|...... ...+.||+.... +. . .... .. .++.. ........|.|..++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 357899999999986533 457999973211 00 0 0000 00 01111 1112234699999999
Q ss_pred CCCEEEEEEeec
Q psy9145 82 MDAGIYECYADN 93 (111)
Q Consensus 82 ~~~g~y~C~~~n 93 (111)
+|.|.|.|...+
T Consensus 82 ~Dsg~YyCa~~~ 93 (107)
T cd07700 82 EDSGTYFCMTVG 93 (107)
T ss_pred HHCEEEEEeEcC
Confidence 999999998753
No 161
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=98.12 E-value=5.2e-05 Score=39.95 Aligned_cols=78 Identities=17% Similarity=0.255 Sum_probs=46.0
Q ss_pred CeEEEEeEEc-ccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEEEEEE
Q psy9145 27 HKIVFICMAK-GKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTD 105 (111)
Q Consensus 27 ~~~~l~C~~~-~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~ 105 (111)
....+.|.+. +.|.+.|.|+++... .................+.+.+......+...|.|.+.+..-.....+.+.
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g---~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~~ 92 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGG---NANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPVT 92 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCC---CeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEE
Confidence 4577889874 789999999986211 110111000011112235666655555667789999999886666655555
Q ss_pred EE
Q psy9145 106 FS 107 (111)
Q Consensus 106 v~ 107 (111)
++
T Consensus 93 l~ 94 (95)
T cd07703 93 LS 94 (95)
T ss_pred Ee
Confidence 43
No 162
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=98.11 E-value=6.1e-05 Score=39.69 Aligned_cols=78 Identities=18% Similarity=0.286 Sum_probs=44.6
Q ss_pred CCeEEEEeEE-cccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEEEEE
Q psy9145 26 GHKIVFICMA-KGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKT 104 (111)
Q Consensus 26 g~~~~l~C~~-~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l 104 (111)
.....+.|.+ .|.|.+.|.|+++. ...................+.|.+......+...|.|.+.+..-.......+
T Consensus 15 ~~~~va~C~s~~gkP~a~ItW~~~~---~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~~~ 91 (95)
T cd05719 15 EPVTVATCVSANGKPPATISWETTL---GGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQRFSV 91 (95)
T ss_pred CccEEEEEECCCCcCCCEEEEEeCC---CCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEE
Confidence 3456778998 58999999999861 1110001100000112223456665555566678999999987655444444
Q ss_pred EE
Q psy9145 105 DF 106 (111)
Q Consensus 105 ~v 106 (111)
.+
T Consensus 92 ~L 93 (95)
T cd05719 92 TL 93 (95)
T ss_pred Ee
Confidence 33
No 163
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=98.09 E-value=0.0001 Score=36.98 Aligned_cols=66 Identities=20% Similarity=0.416 Sum_probs=39.2
Q ss_pred EEEEeEEccc-CC-CeEEEEECCEEeccccc-eeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecC
Q psy9145 29 IVFICMAKGK-PR-PHITWFKDGVELYAHMY-VNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNM 94 (111)
Q Consensus 29 ~~l~C~~~~~-p~-p~i~w~~~g~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~ 94 (111)
+.|.|.+.+. |. ..+.|+++|..+..... ..............+.|.+......+...|.|.+...
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~ 70 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE 70 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence 5789999886 43 46999999986432211 1111111122333455666665666778999988654
No 164
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.05 E-value=0.00025 Score=38.41 Aligned_cols=71 Identities=20% Similarity=0.295 Sum_probs=41.3
Q ss_pred ecCCeEEEEeEEcccCC--CeEEEEECCEEeccccceeeEEeEe-cCcceEEEEEEcCCCCCCCEEEEEEeecCC
Q psy9145 24 VLGHKIVFICMAKGKPR--PHITWFKDGVELYAHMYVNLHEWHY-GTDRIKSKIEIDPATQMDAGIYECYADNMY 95 (111)
Q Consensus 24 ~~g~~~~l~C~~~~~p~--p~i~w~~~g~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 95 (111)
..|+.+.|.|.+.+.-+ ..+.|+++|..+.... ........ ......+.+.+..-...+...|.|.+.-..
T Consensus 19 ~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~-~~~~p~~d~~ty~~~S~L~~~~~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 19 NPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQ-PNITPEGDSVSYNVTSTVQVKLTEDDVHSQVTCEVQHRT 92 (111)
T ss_pred CCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccc-cceeeCCCCCcEEEEEEEEEECccccccCceEEEEEeCC
Confidence 46888999999987544 3689999998875321 11111100 112233455555433332345999888654
No 165
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.03 E-value=0.00013 Score=38.23 Aligned_cols=68 Identities=19% Similarity=0.317 Sum_probs=38.7
Q ss_pred CCeEEEEeEEcccCCC--eEEEEECCEEeccccc-eeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCc
Q psy9145 26 GHKIVFICMAKGKPRP--HITWFKDGVELYAHMY-VNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN 96 (111)
Q Consensus 26 g~~~~l~C~~~~~p~p--~i~w~~~g~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g 96 (111)
++.+.|.|.+.|..++ .+.|.++|........ ..............+.+.+. ..+...|.|.+.....
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~---~~~~~~ytC~V~H~~~ 84 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVP---PEDKARYSCRVEHSGL 84 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEEC---CCCCCEEEEEEEeCCC
Confidence 7789999999996444 6899999863322111 11111100111222344444 3477899999876543
No 166
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.99 E-value=7.2e-05 Score=40.65 Aligned_cols=72 Identities=15% Similarity=0.268 Sum_probs=44.4
Q ss_pred eeecCCeEEEEeEEccc-CCCeEEEEEC--CEEec--cc--c-ce-e-eEEeEec--CcceEEEEEEcCCCCCCCEEEEE
Q psy9145 22 LSVLGHKIVFICMAKGK-PRPHITWFKD--GVELY--AH--M-YV-N-LHEWHYG--TDRIKSKIEIDPATQMDAGIYEC 89 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~-p~p~i~w~~~--g~~~~--~~--~-~~-~-~~~~~~~--~~~~~~~l~i~~~~~~~~g~y~C 89 (111)
.+..|+.+.|.|..... ....+.|++. +..+. .. . .. . -.++... .......|.|..++..|.|.|.|
T Consensus 10 ~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C 89 (116)
T cd07706 10 SVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKYFC 89 (116)
T ss_pred EEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEEEE
Confidence 56799999999997643 4566999973 21110 00 0 00 0 0111111 11223579999999999999999
Q ss_pred Eeec
Q psy9145 90 YADN 93 (111)
Q Consensus 90 ~~~n 93 (111)
.+..
T Consensus 90 ~~~~ 93 (116)
T cd07706 90 ALST 93 (116)
T ss_pred EEEC
Confidence 8885
No 167
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=97.97 E-value=0.0003 Score=39.44 Aligned_cols=72 Identities=17% Similarity=0.318 Sum_probs=41.7
Q ss_pred cCCeEEEEeEEcccCC--CeEEEEECCEEecc----cccee---eEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCC
Q psy9145 25 LGHKIVFICMAKGKPR--PHITWFKDGVELYA----HMYVN---LHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY 95 (111)
Q Consensus 25 ~g~~~~l~C~~~~~p~--p~i~w~~~g~~~~~----~~~~~---~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 95 (111)
.|+.+.|.|.+.+..+ +.+.|++++..... ..... ............+.|.+..-...+...|.|.+....
T Consensus 52 ~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 52 IEEPQTLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS 131 (139)
T ss_pred cCCcEEEEEEECCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence 6888999999988644 37999998753211 01111 000111122233556666555455779999987644
Q ss_pred c
Q psy9145 96 N 96 (111)
Q Consensus 96 g 96 (111)
.
T Consensus 132 l 132 (139)
T cd05771 132 L 132 (139)
T ss_pred C
Confidence 3
No 168
>PHA03376 BARF1; Provisional
Probab=97.92 E-value=0.00041 Score=40.89 Aligned_cols=76 Identities=16% Similarity=0.139 Sum_probs=46.8
Q ss_pred eeecCCeEEEEeEEccc---CCCeEEEEECCE----Eec---------cccceeeEEeEecCcceEEEEEEcCCCCCCCE
Q psy9145 22 LSVLGHKIVFICMAKGK---PRPHITWFKDGV----ELY---------AHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~---p~p~i~w~~~g~----~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g 85 (111)
.+..|+.+.|.|..... ..-++.|++.+. ... ++..++.... .-....+.+|.|.+++..|.|
T Consensus 22 ta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD-~~~~~gnvsLvI~~l~lSDdG 100 (221)
T PHA03376 22 TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFD-IHRSANTFFLVVTAANISHDG 100 (221)
T ss_pred hheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEE-EEecCCeEEEEEEeeeecCCc
Confidence 56789999999997522 233588998432 111 1111111111 111123467999999999999
Q ss_pred EEEEEeecCCcee
Q psy9145 86 IYECYADNMYNVD 98 (111)
Q Consensus 86 ~y~C~~~n~~g~~ 98 (111)
.|.|.........
T Consensus 101 tY~C~fQkge~~~ 113 (221)
T PHA03376 101 NYLCRMKLGETEV 113 (221)
T ss_pred eEEEEEEcCCCce
Confidence 9999988755433
No 169
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.92 E-value=0.00018 Score=39.36 Aligned_cols=73 Identities=14% Similarity=0.135 Sum_probs=44.3
Q ss_pred eeecCCeEEEEeEEcccC------CCeEEEEECCE-----E-ec-cc-cc---eee-EEeEe--cCcceEEEEEEcCCCC
Q psy9145 22 LSVLGHKIVFICMAKGKP------RPHITWFKDGV-----E-LY-AH-MY---VNL-HEWHY--GTDRIKSKIEIDPATQ 81 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p------~p~i~w~~~g~-----~-~~-~~-~~---~~~-~~~~~--~~~~~~~~l~i~~~~~ 81 (111)
.+..|+.+.|.|...... ...+.|++... . .. .. .. ... .++.. ........|.|.+++.
T Consensus 10 ~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~l~~ 89 (119)
T cd05712 10 SVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISDAQP 89 (119)
T ss_pred EEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEccCCh
Confidence 567999999999874221 24589997421 1 00 00 00 000 01111 2233356899999999
Q ss_pred CCCEEEEEEeecC
Q psy9145 82 MDAGIYECYADNM 94 (111)
Q Consensus 82 ~~~g~y~C~~~n~ 94 (111)
.|+|.|.|.+...
T Consensus 90 ~Dsg~Y~C~~~~~ 102 (119)
T cd05712 90 EDSGKYFFRVELG 102 (119)
T ss_pred hhCeEEEEEEEcC
Confidence 9999999988653
No 170
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.87 E-value=0.00044 Score=36.33 Aligned_cols=69 Identities=23% Similarity=0.353 Sum_probs=40.3
Q ss_pred ecCCeEEEEeEEcccCCC--eEEEEECCEEecccc-ceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCC
Q psy9145 24 VLGHKIVFICMAKGKPRP--HITWFKDGVELYAHM-YVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY 95 (111)
Q Consensus 24 ~~g~~~~l~C~~~~~p~p--~i~w~~~g~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 95 (111)
..|+...|.|.+.|.-++ .+.|+++|..+.... ............+..+.|.+. ..+...|.|.+.-..
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~---~~~~~~ysC~V~H~~ 83 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETT---PSRGDTYTCVVEHSS 83 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEc---CCCCCEEEEEEEeCC
Confidence 368889999999985544 479999998765421 111111111112223344443 345668999887543
No 171
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.84 E-value=0.00053 Score=35.99 Aligned_cols=66 Identities=21% Similarity=0.246 Sum_probs=38.2
Q ss_pred cCCeEEEEeEEcccCCCe--EEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeec
Q psy9145 25 LGHKIVFICMAKGKPRPH--ITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADN 93 (111)
Q Consensus 25 ~g~~~~l~C~~~~~p~p~--i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n 93 (111)
.|+...|.|.+.|.-++. +.|.++|..+................+....+.+. ..+...|.|.+.-
T Consensus 14 ~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~---~~~~~~ysC~V~H 81 (93)
T cd05770 14 NGKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFT---PTKGDEYACRVRH 81 (93)
T ss_pred CCCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEEC---CCCCCeEEEEEEE
Confidence 466678999999865554 79999998865211111111111122222334343 4567789998765
No 172
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.82 E-value=0.00016 Score=38.45 Aligned_cols=71 Identities=13% Similarity=0.226 Sum_probs=40.6
Q ss_pred cCCeEEEEeEEcccCC--CeEEEEECCEEeccccce-eeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCC
Q psy9145 25 LGHKIVFICMAKGKPR--PHITWFKDGVELYAHMYV-NLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY 95 (111)
Q Consensus 25 ~g~~~~l~C~~~~~p~--p~i~w~~~g~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 95 (111)
.++.+.|.|.+.+..+ ..+.|+++|..+...... .............+.|.+..-.-.+...|.|.+.-..
T Consensus 16 ~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~ 89 (100)
T cd07699 16 KSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG 89 (100)
T ss_pred cCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence 5778999999987543 458999999876422110 1111001122223445554433334678999887543
No 173
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.78 E-value=0.00012 Score=39.09 Aligned_cols=70 Identities=17% Similarity=0.391 Sum_probs=39.7
Q ss_pred cCCeEEEEeEEcccCCCe--EEEEECCEEeccccceeeEEeEe----cCcceEEEEEEcCCCCCCCEEEEEEeecC
Q psy9145 25 LGHKIVFICMAKGKPRPH--ITWFKDGVELYAHMYVNLHEWHY----GTDRIKSKIEIDPATQMDAGIYECYADNM 94 (111)
Q Consensus 25 ~g~~~~l~C~~~~~p~p~--i~w~~~g~~~~~~~~~~~~~~~~----~~~~~~~~l~i~~~~~~~~g~y~C~~~n~ 94 (111)
.++.+.|.|.+.|..++. +.|.++|..+............. ......+.|.+..-.-.+...|.|.+.=.
T Consensus 15 ~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~ 90 (102)
T cd05768 15 LQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHE 90 (102)
T ss_pred cCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeC
Confidence 578899999999865544 79999998764322111110000 11222344555333223456799987643
No 174
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.74 E-value=0.00053 Score=36.04 Aligned_cols=74 Identities=14% Similarity=0.193 Sum_probs=41.1
Q ss_pred cCCeEEEEeEEcccCCC--eEEEEECCEEeccccce-eeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCcee
Q psy9145 25 LGHKIVFICMAKGKPRP--HITWFKDGVELYAHMYV-NLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD 98 (111)
Q Consensus 25 ~g~~~~l~C~~~~~p~p--~i~w~~~g~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 98 (111)
..+.+.|.|.+.|.-++ .+.|.++|......... .............+.|.+..-.-.+...|.|.+.-.....
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~~ 89 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTTF 89 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCeee
Confidence 45668999999885443 58999999875322110 0000001122223445555333335678999987655443
No 175
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.66 E-value=0.0012 Score=35.98 Aligned_cols=72 Identities=18% Similarity=0.324 Sum_probs=42.8
Q ss_pred eeecCCeEEEEeEEcccC--CCeEEEEEC--CEEec----cc---cce----e-eEEeEec--CcceEEEEEEcCCCCCC
Q psy9145 22 LSVLGHKIVFICMAKGKP--RPHITWFKD--GVELY----AH---MYV----N-LHEWHYG--TDRIKSKIEIDPATQMD 83 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p--~p~i~w~~~--g~~~~----~~---~~~----~-~~~~~~~--~~~~~~~l~i~~~~~~~ 83 (111)
.+.+|+.+.|.|...... ...+.||+. |..+. .. ... . ..++... .......|.|.+++.+|
T Consensus 8 ~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~D 87 (117)
T cd04981 8 LVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTPED 87 (117)
T ss_pred EEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCHHH
Confidence 567999999999875433 456999972 22110 00 000 0 0011111 11112368999999999
Q ss_pred CEEEEEEeec
Q psy9145 84 AGIYECYADN 93 (111)
Q Consensus 84 ~g~y~C~~~n 93 (111)
+|.|.|-...
T Consensus 88 sa~YyCa~~~ 97 (117)
T cd04981 88 TAVYYCARGL 97 (117)
T ss_pred CEEEEEEEEc
Confidence 9999998765
No 176
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.62 E-value=0.00063 Score=34.74 Aligned_cols=68 Identities=21% Similarity=0.373 Sum_probs=41.2
Q ss_pred cCCeEEEEeEEcccCCC--eEEEEECCEEeccccceeeEE-eEecCcceEEEEEEcCCCCCCCEEEEEEeecCC
Q psy9145 25 LGHKIVFICMAKGKPRP--HITWFKDGVELYAHMYVNLHE-WHYGTDRIKSKIEIDPATQMDAGIYECYADNMY 95 (111)
Q Consensus 25 ~g~~~~l~C~~~~~p~p--~i~w~~~g~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 95 (111)
.++.+.|.|.+.+..+. .+.|+++|..+.......... .........+.+.+. ..+...|.|.+.-..
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~ 77 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHES 77 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETT
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECC
Confidence 48899999999875443 489999998775432222111 111122223455555 344558999887544
No 177
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.61 E-value=0.0016 Score=34.21 Aligned_cols=67 Identities=22% Similarity=0.419 Sum_probs=38.2
Q ss_pred cCCeEEEEeEEcccCCC--eEEEEECCEEecccccee-eEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecC
Q psy9145 25 LGHKIVFICMAKGKPRP--HITWFKDGVELYAHMYVN-LHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNM 94 (111)
Q Consensus 25 ~g~~~~l~C~~~~~p~p--~i~w~~~g~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~ 94 (111)
.++...|.|.+.|.-+. .+.|.++|..+....... .........+..+.|.+.. .+...|.|.+.-.
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~---~~~~~ytC~V~H~ 83 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTP---EEGDIYSCIVEHW 83 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEEC---CCCCeEEEEEEeC
Confidence 45667999999985544 479999998765321111 1111111122234455543 4556899988643
No 178
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=97.60 E-value=0.00018 Score=40.37 Aligned_cols=35 Identities=17% Similarity=0.260 Sum_probs=30.2
Q ss_pred EEEEcCCCCCCCEEEEEEeecCCceeeEEEEEEEE
Q psy9145 73 KIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFS 107 (111)
Q Consensus 73 ~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~ 107 (111)
+|.|.+++..|.|.|.|.+.+..|.....+.|.|.
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~ 36 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVS 36 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEe
Confidence 68899999999999999999988888777777653
No 179
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.49 E-value=0.00098 Score=33.36 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=17.9
Q ss_pred EEEEEEcCCCCCCCEEEEEE
Q psy9145 71 KSKIEIDPATQMDAGIYECY 90 (111)
Q Consensus 71 ~~~l~i~~~~~~~~g~y~C~ 90 (111)
...|.|.+++..|.|.|.|.
T Consensus 61 ~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 61 DVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred EEEEEEcCCCHHHCEEEEEc
Confidence 45799999999999999995
No 180
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.47 E-value=0.00079 Score=32.79 Aligned_cols=55 Identities=25% Similarity=0.358 Sum_probs=35.0
Q ss_pred eeecCCeEEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCC
Q psy9145 22 LSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY 95 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 95 (111)
+...|..+.++|.... ..+.|.++++....... .+.+.+-. ++.|.|.|.+.+..
T Consensus 3 VsisGTtVtlTCP~~~---~~i~W~~n~~~~~g~~~---------------~~~~~~~~-e~~G~Y~C~~~~~~ 57 (65)
T cd07692 3 VSISGTTVTVTCPLSG---DDIKWKKNDQVSQGSDE---------------KYLSLNHF-SSSGYYHCTADNAN 57 (65)
T ss_pred EEEeccEEEEECCCCC---CCceEEeCCccCCCCCc---------------eEEeeccC-CCCceEEEEeCCCc
Confidence 3468999999997542 23899998855443211 12222222 67999999886543
No 181
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.43 E-value=0.0022 Score=33.90 Aligned_cols=73 Identities=19% Similarity=0.280 Sum_probs=43.6
Q ss_pred eeecCCeEEE-EeEE-cccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCce
Q psy9145 22 LSVLGHKIVF-ICMA-KGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV 97 (111)
Q Consensus 22 ~~~~g~~~~l-~C~~-~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~ 97 (111)
.+.+|+.+.+ .|.+ .|.|.+.|.|+.+...... ..............+.+.+...+..+...+.|.+....-.
T Consensus 12 ~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~---~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al~ 86 (97)
T cd07704 12 LIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSE---SHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPALQ 86 (97)
T ss_pred EeecCcceeEEEEEccCCccCCEeEEeCCCCCccc---eeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcccC
Confidence 4567888888 7887 6889999999975322110 1111110112222345666555566677899999876543
No 182
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.38 E-value=0.0028 Score=33.41 Aligned_cols=72 Identities=11% Similarity=0.254 Sum_probs=37.9
Q ss_pred ecCCeEEEEeEEccc-CCC--eEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCC
Q psy9145 24 VLGHKIVFICMAKGK-PRP--HITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY 95 (111)
Q Consensus 24 ~~g~~~~l~C~~~~~-p~p--~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 95 (111)
..|+.+.|.|.+.+. -++ .+.|.+++......................+.+.+..-.-.+...|.|.+.-..
T Consensus 12 ~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~ 86 (96)
T cd07696 12 LLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPD 86 (96)
T ss_pred ccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCC
Confidence 458899999999988 444 479999864322110000000001112222344444322223457999887544
No 183
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.36 E-value=0.0036 Score=33.07 Aligned_cols=66 Identities=6% Similarity=0.099 Sum_probs=36.2
Q ss_pred cCCeEEEEeEEcccCCC--eEEEEECCEEeccccce-eeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeec
Q psy9145 25 LGHKIVFICMAKGKPRP--HITWFKDGVELYAHMYV-NLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADN 93 (111)
Q Consensus 25 ~g~~~~l~C~~~~~p~p--~i~w~~~g~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n 93 (111)
.++...|.|.+.+.-++ .+.|.++|......... ..... .......+.|.+..-. ....|.|.+.-
T Consensus 15 ~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~-~dty~~~S~L~vt~~~--~~~~ysC~V~H 83 (96)
T cd07697 15 KQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKD-NDVYSTTSWLTVTKDS--LGKKFRCIYKH 83 (96)
T ss_pred cCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecC-CCEEEEEEEEEECchh--CCCeEEEEEEE
Confidence 45678999999986554 47899999875432111 01000 0112222345444321 23459998865
No 184
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.27 E-value=0.0039 Score=34.03 Aligned_cols=78 Identities=17% Similarity=0.329 Sum_probs=44.1
Q ss_pred cCCeEEEEeEEcccCCC--eEEEEECCEEeccccceeeEEeEe--cCcceEEEEEEcCCCCCC-CEEEEEEeecCCceee
Q psy9145 25 LGHKIVFICMAKGKPRP--HITWFKDGVELYAHMYVNLHEWHY--GTDRIKSKIEIDPATQMD-AGIYECYADNMYNVDT 99 (111)
Q Consensus 25 ~g~~~~l~C~~~~~p~p--~i~w~~~g~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~~-~g~y~C~~~n~~g~~~ 99 (111)
.++.+.|.|.+.+.-+. .+.|.+++..+............. ......+.|.+..-.-.+ ...|.|.+.=......
T Consensus 17 ~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~~~ 96 (115)
T cd05769 17 NKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGTDT 96 (115)
T ss_pred cCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCccc
Confidence 46778999999885544 589999998765321110000000 122233456665443223 5689998875554444
Q ss_pred EEE
Q psy9145 100 RTF 102 (111)
Q Consensus 100 ~~~ 102 (111)
..+
T Consensus 97 ~~~ 99 (115)
T cd05769 97 DKW 99 (115)
T ss_pred eee
Confidence 444
No 185
>PHA02633 hypothetical protein; Provisional
Probab=97.19 E-value=0.0029 Score=30.47 Aligned_cols=35 Identities=31% Similarity=0.400 Sum_probs=29.6
Q ss_pred EEEEcCCCCCCCEEEEEEeecCCceeeEEEEEEEE
Q psy9145 73 KIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFS 107 (111)
Q Consensus 73 ~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~ 107 (111)
.|.+.+....|+|.|.|...|..-....++.|.|.
T Consensus 19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~ 53 (63)
T PHA02633 19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCIC 53 (63)
T ss_pred cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEe
Confidence 57888888999999999999888777777777765
No 186
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.17 E-value=0.0058 Score=32.16 Aligned_cols=70 Identities=11% Similarity=0.137 Sum_probs=37.6
Q ss_pred cCCeEEEEeEEcccCCC--eEEEEECCEEeccccce-eeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCC
Q psy9145 25 LGHKIVFICMAKGKPRP--HITWFKDGVELYAHMYV-NLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY 95 (111)
Q Consensus 25 ~g~~~~l~C~~~~~p~p--~i~w~~~g~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 95 (111)
.++.+.|.|.+.+.-+. .+.|.++|.. ...... .......+..+..+.|.+..-.-.....|.|.+.-..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 46678999999986554 4789999986 321100 0000001222223445444322122557999887543
No 187
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.16 E-value=0.0043 Score=30.54 Aligned_cols=50 Identities=22% Similarity=0.468 Sum_probs=33.7
Q ss_pred cCCeEEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeec
Q psy9145 25 LGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADN 93 (111)
Q Consensus 25 ~g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n 93 (111)
..+.+.+.|.. .-.+.|++ |..+.... +.++.+-.......|.|.|.+.+
T Consensus 5 ~~~~V~L~C~~----~tsi~W~k-G~~~~~~~--------------~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 5 SEGKVFLKCNG----ATNITWKK-GKEILEVS--------------NTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred cCceEEEEecC----CCcEEEec-Cccccccc--------------ccEEeccCcccCCCcceEecCcc
Confidence 35578889965 24599998 54433221 12577777777779999998766
No 188
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.56 E-value=0.013 Score=31.14 Aligned_cols=68 Identities=16% Similarity=0.176 Sum_probs=36.6
Q ss_pred cCCeEEEEeEEcccC-C--CeEEEEECCEEeccccceeeE-EeEecCcceEEEEEEcCCCCCCCEEEEEEeecCC
Q psy9145 25 LGHKIVFICMAKGKP-R--PHITWFKDGVELYAHMYVNLH-EWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY 95 (111)
Q Consensus 25 ~g~~~~l~C~~~~~p-~--p~i~w~~~g~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 95 (111)
.+..+.+.|.+.+.- + ..+.|.++|.. ... .... ..........+.|.+..-.=.....|.|.+....
T Consensus 18 ~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~--~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~ 89 (99)
T cd04986 18 LGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAV--QTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPE 89 (99)
T ss_pred cCCccEEEEEEeccCCCCCeEEEEEECCcc-CcE--EcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCC
Confidence 678899999998855 2 35899998765 111 1110 0001112223345444221133456999887643
No 189
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=95.97 E-value=0.02 Score=31.88 Aligned_cols=83 Identities=12% Similarity=0.247 Sum_probs=44.8
Q ss_pred ecCCeEEEEeEEccc-----CCCeEEEEECCEEecccccee--eEEeE------ecCcceEEEEEEcCCCCCCCEEEEEE
Q psy9145 24 VLGHKIVFICMAKGK-----PRPHITWFKDGVELYAHMYVN--LHEWH------YGTDRIKSKIEIDPATQMDAGIYECY 90 (111)
Q Consensus 24 ~~g~~~~l~C~~~~~-----p~p~i~w~~~g~~~~~~~~~~--~~~~~------~~~~~~~~~l~i~~~~~~~~g~y~C~ 90 (111)
.-.+.+.+.|.+... ..-.+.|..++..+..-.... ..... ..-....++|.+...... .|+|.|.
T Consensus 25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCe 103 (130)
T PF08204_consen 25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCE 103 (130)
T ss_dssp TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEE
T ss_pred ecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEE
Confidence 578899999998542 123489998887654211100 00000 000111245666654333 8999999
Q ss_pred eecCCceeeEEEEEEEE
Q psy9145 91 ADNMYNVDTRTFKTDFS 107 (111)
Q Consensus 91 ~~n~~g~~~~~~~l~v~ 107 (111)
+..........+.|.+.
T Consensus 104 Vt~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 104 VTELSREGETTIELKYR 120 (130)
T ss_dssp EEETTEEEEEEEEEEE-
T ss_pred EEecCCCceEEEEEEEE
Confidence 99998888888887763
No 190
>KOG3515|consensus
Probab=95.87 E-value=0.0082 Score=42.36 Aligned_cols=66 Identities=12% Similarity=0.211 Sum_probs=45.0
Q ss_pred eeecCCeEEEEeEEcccCC-CeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCce
Q psy9145 22 LSVLGHKIVFICMAKGKPR-PHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV 97 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~-p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~ 97 (111)
.+..|+.+.|.|.+.+.|+ +++.|++.+....... ......++......++..+.|.|.+.|..+.
T Consensus 18 ~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~ 84 (741)
T KOG3515|consen 18 GLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEHGRY----------ATIADPTLVTTGDVRDTVAELNCRAFNSVGM 84 (741)
T ss_pred hhccCCcceeeeecCCCCCCcceEEEecCccccccc----------ccccCCceeeecchhhhhhhhhhhhcccccC
Confidence 5679999999999987665 5799999765443110 1111235666666666778888988887554
No 191
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=95.74 E-value=0.14 Score=27.96 Aligned_cols=71 Identities=10% Similarity=0.085 Sum_probs=41.6
Q ss_pred eeecCCeEEEEeEEcccCC---CeEEEEEC--CE-Eec-c----c-----cceeeEEeEecCcceEEEEEEcCCCCCCCE
Q psy9145 22 LSVLGHKIVFICMAKGKPR---PHITWFKD--GV-ELY-A----H-----MYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~---p~i~w~~~--g~-~~~-~----~-----~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g 85 (111)
.+..|+.+.|.|...+... -.+.|++. +. +.- . . .+.+..- ..........|.+.+++.+|.+
T Consensus 9 lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tc-s~~~s~ntv~L~l~~L~a~DTa 87 (115)
T cd05721 9 LASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNC-DGTLGNEQVNFTLQNLRANQTD 87 (115)
T ss_pred EEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEE-eEeCCCCEEEEEEcCCCHHHCe
Confidence 4568899999999866443 35888872 21 000 0 0 0000000 1112222357999999999999
Q ss_pred EEEEEeec
Q psy9145 86 IYECYADN 93 (111)
Q Consensus 86 ~y~C~~~n 93 (111)
.|.|....
T Consensus 88 ~Y~Ca~e~ 95 (115)
T cd05721 88 IYFCKIEL 95 (115)
T ss_pred EEEEEeee
Confidence 99996543
No 192
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=95.61 E-value=0.15 Score=27.16 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=37.7
Q ss_pred ceeecCCeEEEEeEEcc-cCC--CeEEEEECCEEeccccceee-EEeEecCcceEEEEEEcCCCCCCCE-EEEEEeecC
Q psy9145 21 PLSVLGHKIVFICMAKG-KPR--PHITWFKDGVELYAHMYVNL-HEWHYGTDRIKSKIEIDPATQMDAG-IYECYADNM 94 (111)
Q Consensus 21 ~~~~~g~~~~l~C~~~~-~p~--p~i~w~~~g~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~~~g-~y~C~~~n~ 94 (111)
+...+|..+.+.|.+.+ .|. ..+.|++....+........ ........ ...+++... ++|.| +|.|.|.=.
T Consensus 10 ~~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~--~~~vtftpt-reD~g~~fsC~A~L~ 85 (99)
T cd07689 10 GPLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETK--SLEVTFTPT-IEDIGKVLVCRAKLH 85 (99)
T ss_pred CcccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCc--ceeEEEecc-hhhCCcEEEEEEEEe
Confidence 44579999999999964 444 45888875544432211100 00000011 123333333 55655 899988743
No 193
>KOG1480|consensus
Probab=95.57 E-value=0.0054 Score=43.22 Aligned_cols=70 Identities=21% Similarity=0.368 Sum_probs=49.7
Q ss_pred eeecCCeEEEEeEE-cccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceee
Q psy9145 22 LSVLGHKIVFICMA-KGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT 99 (111)
Q Consensus 22 ~~~~g~~~~l~C~~-~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~ 99 (111)
.+..+...++.|.. .+.|...++|++++..+.+....... ....+.+...+..|.|+|+|.+.|..+...
T Consensus 140 ~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~--------~d~~li~~~arlsd~~nytc~a~ni~~~r~ 210 (909)
T KOG1480|consen 140 EVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRA--------SDHNLIISQARLSDSGNYTCEATNIVAKRK 210 (909)
T ss_pred eecccccccccccCcccchhhhhhccccCCCCCccccchhh--------hcCCccccchhhhhcccceeeeehhhcccc
Confidence 34567777888886 57777889999998776652221111 112577788888999999999999888543
No 194
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=95.51 E-value=0.15 Score=26.57 Aligned_cols=64 Identities=19% Similarity=0.390 Sum_probs=38.5
Q ss_pred ceeecCCeEEEEeEEcc-----cCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEe
Q psy9145 21 PLSVLGHKIVFICMAKG-----KPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYA 91 (111)
Q Consensus 21 ~~~~~g~~~~l~C~~~~-----~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~ 91 (111)
+++..|+.+...|.... .....+.|..++..++....... ... .+..++..........|.|..
T Consensus 13 pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~i-----n~~--~SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 13 PVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVI-----NDT--VSSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp SEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEE-----STT--EEEEEESS--SSEEEEEEEEE
T ss_pred CEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHccee-----CCe--EEEEEEccCCCCCceEEEEEE
Confidence 46789999999999842 23456999988876655433222 111 256777777666555666653
No 195
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=95.22 E-value=0.22 Score=26.82 Aligned_cols=36 Identities=22% Similarity=0.159 Sum_probs=26.8
Q ss_pred EEEEEcCCCCCCCEEEEEEeecCCceeeEEEEEEEEE
Q psy9145 72 SKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFSI 108 (111)
Q Consensus 72 ~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~ 108 (111)
..|.|..++..|+|.|.....+..|.. ......|.+
T Consensus 71 laLlIkaAq~qDSG~Y~LEvT~~sG~V-~~~~FqVsV 106 (108)
T PF11465_consen 71 LALLIKAAQPQDSGLYCLEVTNESGKV-CTKNFQVSV 106 (108)
T ss_dssp TEEEESS-SGGG-EEEEEEEEETTSCE-EEEEEEEEE
T ss_pred ceEEEeecCcccCceEEEEEEcCCCcE-EEEEEEEEe
Confidence 479999999999999999999999876 444444444
No 196
>KOG4597|consensus
Probab=95.07 E-value=0.059 Score=36.30 Aligned_cols=80 Identities=15% Similarity=0.049 Sum_probs=56.0
Q ss_pred eecCCeEEEEeEEcccCCCeEEEEE---CCEEeccccceeeEEeEecCc--ceEEEEEEcCCCCCCCEEEEEEeecCCce
Q psy9145 23 SVLGHKIVFICMAKGKPRPHITWFK---DGVELYAHMYVNLHEWHYGTD--RIKSKIEIDPATQMDAGIYECYADNMYNV 97 (111)
Q Consensus 23 ~~~g~~~~l~C~~~~~p~p~i~w~~---~g~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~~~g~y~C~~~n~~g~ 97 (111)
+-.++...++|...|.+.+.+.|.+ ++..+... .... ..+. .....|.|-+-...+.|.|.|.+.+..|.
T Consensus 208 vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~-~nq~----~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~ 282 (560)
T KOG4597|consen 208 VGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMR-PNQT----VENPVVTSTCQLVICNEWQADAGWYTCSARCGAGF 282 (560)
T ss_pred cccchhhcccccccCCcCceeeeehhhccccceeec-Cccc----cCCcceeeeeeEEEcchhhcCCCceeeccccccce
Confidence 3578889999999999999999975 33222111 1111 1111 11245778888888999999999999999
Q ss_pred eeEEEEEEEE
Q psy9145 98 DTRTFKTDFS 107 (111)
Q Consensus 98 ~~~~~~l~v~ 107 (111)
..+.+.+.+.
T Consensus 283 ~~rdv~c~s~ 292 (560)
T KOG4597|consen 283 LRRDVPCSSV 292 (560)
T ss_pred eeccceeeee
Confidence 9888877654
No 197
>PHA03042 CD47-like protein; Provisional
Probab=95.04 E-value=0.49 Score=29.82 Aligned_cols=71 Identities=20% Similarity=0.315 Sum_probs=45.8
Q ss_pred ecCCeEEEEeEEccc-----CCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCcee
Q psy9145 24 VLGHKIVFICMAKGK-----PRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD 98 (111)
Q Consensus 24 ~~g~~~~l~C~~~~~-----p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 98 (111)
.-.+.+.+.|..... -.-.+.|..++..+...... ..+++.+...+ .-.|+|+|.+.+.....
T Consensus 29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t-----------n~aSL~~~f~~-~l~GNYTCEv~~l~n~g 96 (286)
T PHA03042 29 TCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT-----------NTSSLKFNFSK-NLSGNYTCEAINKFNKI 96 (286)
T ss_pred ecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC-----------cceEEEEeccc-cCCCceeEEEeecccCc
Confidence 568899999998532 24469999888765432211 11355554432 33799999999877766
Q ss_pred eEEEEEEE
Q psy9145 99 TRTFKTDF 106 (111)
Q Consensus 99 ~~~~~l~v 106 (111)
...+.|..
T Consensus 97 k~~IeLk~ 104 (286)
T PHA03042 97 KNTIELQY 104 (286)
T ss_pred cEEEEEEE
Confidence 66555543
No 198
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=95.04 E-value=0.14 Score=31.94 Aligned_cols=49 Identities=24% Similarity=0.410 Sum_probs=34.9
Q ss_pred CCCeEEEEE-CCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCC
Q psy9145 39 PRPHITWFK-DGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY 95 (111)
Q Consensus 39 p~p~i~w~~-~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 95 (111)
..|...|.. +|..+......++.. .+.|.+.+.....+|.|.|......
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~--------TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITE--------TGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEcc--------CceEEeeccccccCCceEEEEEEEe
Confidence 357888986 455555554444421 2469999999999999999888765
No 199
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=94.93 E-value=0.23 Score=26.19 Aligned_cols=72 Identities=18% Similarity=0.315 Sum_probs=42.1
Q ss_pred EEEEeEE-cccCCCeEEEEE--CCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEEEEEE
Q psy9145 29 IVFICMA-KGKPRPHITWFK--DGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTD 105 (111)
Q Consensus 29 ~~l~C~~-~~~p~p~i~w~~--~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~ 105 (111)
..-.|.+ .|.|+.+|.|.- +|.. . .+......+.....+.+.+-.....+.....|.+.........++.|.
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~l~G~~-e----tq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L~ 97 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTRLKGEA-E----FQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTLN 97 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEccCCCce-e----eeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEec
Confidence 4456885 789999999974 3322 1 111111111222234556666667778889999988766555555554
No 200
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=94.66 E-value=0.27 Score=25.05 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=24.6
Q ss_pred EEEEcCCCCCCCEEEEEEe-ecCCceeeEEEEEEEE
Q psy9145 73 KIEIDPATQMDAGIYECYA-DNMYNVDTRTFKTDFS 107 (111)
Q Consensus 73 ~l~i~~~~~~~~g~y~C~~-~n~~g~~~~~~~l~v~ 107 (111)
.......+..|.|.+.|.+ .+..-.......+.|.
T Consensus 44 ~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v~ 79 (80)
T PF05790_consen 44 LVSTFTPTTEDSGTWVCTASDNEPKERESKIEILVL 79 (80)
T ss_dssp EEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEEE
T ss_pred EEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEcC
Confidence 3455666778999999999 6666666666655543
No 201
>PHA03270 envelope glycoprotein C; Provisional
Probab=93.93 E-value=1.2 Score=29.99 Aligned_cols=85 Identities=14% Similarity=0.115 Sum_probs=47.2
Q ss_pred ceeeccccceeecceeecCCeEEEEeEEcccCCC---eEEEEECCEEeccccceeeEEeEecC-cceEEEEEEcCCCCCC
Q psy9145 8 LSLKRSCQQVKYFPLSVLGHKIVFICMAKGKPRP---HITWFKDGVELYAHMYVNLHEWHYGT-DRIKSKIEIDPATQMD 83 (111)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p---~i~w~~~g~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~~ 83 (111)
+.++.+++.....+.+..|+...-.|.+..+-+| .+.|++++..+..............+ -...+++.+.......
T Consensus 216 V~~yr~Psvsv~~~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~ 295 (466)
T PHA03270 216 VRMFRRPSLSIRPHAVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLA 295 (466)
T ss_pred EEEecCCcccccCCccccCCCceEEEEeeeecCCCceEEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCC
Confidence 4444455544444567899999999999765544 49999999877543322221111111 1122455555443322
Q ss_pred C-EEEEEEee
Q psy9145 84 A-GIYECYAD 92 (111)
Q Consensus 84 ~-g~y~C~~~ 92 (111)
. -+..|.+.
T Consensus 296 ~PPsLrC~v~ 305 (466)
T PHA03270 296 PPRNLTCEFT 305 (466)
T ss_pred CCCCceEEEE
Confidence 2 25778554
No 202
>KOG3515|consensus
Probab=93.45 E-value=0.4 Score=34.42 Aligned_cols=71 Identities=21% Similarity=0.274 Sum_probs=42.6
Q ss_pred ecCCeEEEEeEE--cccCCCeEEEEECCEEecccccee-eEE--eEecCcceEEEEEEcCCCCCCCEEEEEEeecC
Q psy9145 24 VLGHKIVFICMA--KGKPRPHITWFKDGVELYAHMYVN-LHE--WHYGTDRIKSKIEIDPATQMDAGIYECYADNM 94 (111)
Q Consensus 24 ~~g~~~~l~C~~--~~~p~p~i~w~~~g~~~~~~~~~~-~~~--~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~ 94 (111)
..+..+.+.|.. .+.|.+.+.|..++.......... ... .........+.+.+...+..+.|+|+|.+.|.
T Consensus 110 ~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr 185 (741)
T KOG3515|consen 110 VDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNR 185 (741)
T ss_pred hcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEcccccc
Confidence 577889999965 466778899998765543222100 000 00011011234566666778899999999994
No 203
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=91.02 E-value=1.6 Score=28.59 Aligned_cols=21 Identities=10% Similarity=0.468 Sum_probs=17.2
Q ss_pred eEEEEeEEcccCCCe--EEEEEC
Q psy9145 28 KIVFICMAKGKPRPH--ITWFKD 48 (111)
Q Consensus 28 ~~~l~C~~~~~p~p~--i~w~~~ 48 (111)
.+.|.|.+.|.-+.. +.|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 579999999976654 789998
No 204
>PHA03273 envelope glycoprotein C; Provisional
Probab=89.78 E-value=4.8 Score=27.55 Aligned_cols=46 Identities=15% Similarity=0.205 Sum_probs=33.3
Q ss_pred ceeeccccceeecceeecCCeEEEEeEEcccCCC---eEEEEECCEEec
Q psy9145 8 LSLKRSCQQVKYFPLSVLGHKIVFICMAKGKPRP---HITWFKDGVELY 53 (111)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p---~i~w~~~g~~~~ 53 (111)
+.+..+++.....+.+..|+...-.|.+..+-+| .+.|++++..+.
T Consensus 232 V~~yr~Psvsv~~~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~ 280 (486)
T PHA03273 232 VSTYNAPLVDLSVHPSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVD 280 (486)
T ss_pred EEEecCCcccccCCccccCCCceEEEEeeeecCCCceEEEEEeCCeecc
Confidence 3344555544444577899999999999765544 499999998876
No 205
>PHA02982 hypothetical protein; Provisional
Probab=89.52 E-value=3.4 Score=25.35 Aligned_cols=74 Identities=14% Similarity=0.217 Sum_probs=44.6
Q ss_pred eeecCCeEEEEeEEcc-cCCCeEEEEEC-CEEeccc--------------cce-eeEEeEecCcceEEEEEEcCCCCCCC
Q psy9145 22 LSVLGHKIVFICMAKG-KPRPHITWFKD-GVELYAH--------------MYV-NLHEWHYGTDRIKSKIEIDPATQMDA 84 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~-~p~p~i~w~~~-g~~~~~~--------------~~~-~~~~~~~~~~~~~~~l~i~~~~~~~~ 84 (111)
.+..++.+.|.|.... .-..+..|..+ +..+... .++ ......... ..++|+|..+..++.
T Consensus 35 ~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g--~~STLTIkk~~i~N~ 112 (251)
T PHA02982 35 NATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSG--NSSTFTMKKPDPQNL 112 (251)
T ss_pred hccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEec--cceeEEeccCCcccC
Confidence 4467999999999632 22345778763 3222210 000 011111122 246899999999999
Q ss_pred EEEEEEeecCCce
Q psy9145 85 GIYECYADNMYNV 97 (111)
Q Consensus 85 g~y~C~~~n~~g~ 97 (111)
|-|.|.+....+.
T Consensus 113 GCYtc~~ks~~~k 125 (251)
T PHA02982 113 GCFTCEAKDAEGK 125 (251)
T ss_pred CceEEEEecCCCc
Confidence 9999999886653
No 206
>PHA03269 envelope glycoprotein C; Provisional
Probab=88.88 E-value=5.2 Score=27.69 Aligned_cols=47 Identities=11% Similarity=0.071 Sum_probs=32.9
Q ss_pred ceeeccccceeecceeecCCeEEEEeEEcccCCC---eEEEEECCEEecc
Q psy9145 8 LSLKRSCQQVKYFPLSVLGHKIVFICMAKGKPRP---HITWFKDGVELYA 54 (111)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p---~i~w~~~g~~~~~ 54 (111)
+.+..++......+-+..|+...-.|.+..+-+| .+.|++++..+..
T Consensus 324 V~~yr~PsVsV~p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~ 373 (566)
T PHA03269 324 VMSYKRPNITVIGDPVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGK 373 (566)
T ss_pred EEEecCCCccccCCccccCCCceEEEEeeeecCCCceEEEEEeCCcccCc
Confidence 3444455444444567899999999999765544 4999999877763
No 207
>PHA03271 envelope glycoprotein C; Provisional
Probab=85.42 E-value=9.4 Score=26.00 Aligned_cols=35 Identities=17% Similarity=0.359 Sum_probs=27.4
Q ss_pred ceeecCCeEEEEeEEcccCCC---eEEEEECCEEeccc
Q psy9145 21 PLSVLGHKIVFICMAKGKPRP---HITWFKDGVELYAH 55 (111)
Q Consensus 21 ~~~~~g~~~~l~C~~~~~p~p---~i~w~~~g~~~~~~ 55 (111)
+.+..|+...-.|.+..+-+| .+.|+.+|......
T Consensus 255 ~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~ 292 (490)
T PHA03271 255 PPVLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATPR 292 (490)
T ss_pred CccccCCCceEEEEeeeecCCCceEEEEEeCCccccCc
Confidence 466799999999999766544 49999998876543
No 208
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=83.48 E-value=4.5 Score=20.76 Aligned_cols=56 Identities=16% Similarity=0.152 Sum_probs=34.3
Q ss_pred eEEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeE
Q psy9145 28 KIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTR 100 (111)
Q Consensus 28 ~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~ 100 (111)
...+.+.+.+. ...+.|+.||..+....... .+... ....|.|...+....|....
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~~~-------------~~~~~---~~~~G~h~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQPGH-------------QLFWQ---PDRPGEHTLTVVDAQGRSAS 86 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEEcccCCCCC-------------eEEeC---CCCCeeEEEEEEcCCCCEEE
Confidence 45555565555 44899999998884322211 12222 23578888888888776554
No 209
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=81.77 E-value=8.9 Score=25.99 Aligned_cols=76 Identities=21% Similarity=0.277 Sum_probs=46.0
Q ss_pred eeecCCeEEEEeEEc--cc-CCCeEEEEECCEEecccc-----------------cee-eEEeEecCcceEEEEEEcCCC
Q psy9145 22 LSVLGHKIVFICMAK--GK-PRPHITWFKDGVELYAHM-----------------YVN-LHEWHYGTDRIKSKIEIDPAT 80 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~--~~-p~p~i~w~~~g~~~~~~~-----------------~~~-~~~~~~~~~~~~~~l~i~~~~ 80 (111)
++..|..+.+.|... |. -...+.|+..|-++.+-. .+- .....+..+--.++|+|..+.
T Consensus 275 ~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka~ 354 (500)
T PHA02914 275 MLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKAH 354 (500)
T ss_pred EeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeEE
Confidence 445699999999975 32 334588987554333100 000 000011122224689999999
Q ss_pred CCCCEEEEEEeecCCce
Q psy9145 81 QMDAGIYECYADNMYNV 97 (111)
Q Consensus 81 ~~~~g~y~C~~~n~~g~ 97 (111)
-.+.|-|.|.+....-.
T Consensus 355 I~N~GCY~~~a~~g~~~ 371 (500)
T PHA02914 355 INNAGCYEAQAFMGKFK 371 (500)
T ss_pred EEcCCceEEEEecCcch
Confidence 99999999998865443
No 210
>PHA03052 Hypothetical protein; Provisional
Probab=81.00 E-value=5.2 Score=19.77 Aligned_cols=32 Identities=19% Similarity=0.570 Sum_probs=23.4
Q ss_pred ceeecCCeEEEEeEEc-ccC--CCeEEEEECCEEe
Q psy9145 21 PLSVLGHKIVFICMAK-GKP--RPHITWFKDGVEL 52 (111)
Q Consensus 21 ~~~~~g~~~~l~C~~~-~~p--~p~i~w~~~g~~~ 52 (111)
..+..|..+.+.|.+. |.+ .+.+.|..++...
T Consensus 7 i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 7 IVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY 41 (69)
T ss_pred EEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence 3567899999999985 333 3558888877655
No 211
>PHA03376 BARF1; Provisional
Probab=74.74 E-value=3.2 Score=25.13 Aligned_cols=24 Identities=21% Similarity=0.589 Sum_probs=20.1
Q ss_pred CCeEEEEeEEcccCCCeEEEEECC
Q psy9145 26 GHKIVFICMAKGKPRPHITWFKDG 49 (111)
Q Consensus 26 g~~~~l~C~~~~~p~p~i~w~~~g 49 (111)
-+...+.|...|.|.|++.|..+.
T Consensus 139 ~~~~~i~C~sggfP~P~~~Wle~~ 162 (221)
T PHA03376 139 FSVLTVTCTVNAFPHPHVQWLMPE 162 (221)
T ss_pred CCeeEEEEecCCcCCchheecccc
Confidence 566788899889999999998754
No 212
>PHA03189 UL14 tegument protein; Provisional
Probab=64.73 E-value=37 Score=22.27 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=18.9
Q ss_pred EEEEcCCCCCCCEEEEEEeecCCceeeEE
Q psy9145 73 KIEIDPATQMDAGIYECYADNMYNVDTRT 101 (111)
Q Consensus 73 ~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 101 (111)
+|++ ++..+.+|.|.|...|.....-.+
T Consensus 135 tLtF-~v~t~taG~Y~CvLrN~tHglv~~ 162 (348)
T PHA03189 135 TLTF-RVSTSTAGMYECVLRNETHGLVLQ 162 (348)
T ss_pred EEEE-EEEecccceEEEEeccccceeeeE
Confidence 3444 334567999999999977654443
No 213
>PHA03112 IL-18 binding protein; Provisional
Probab=61.88 E-value=28 Score=19.95 Aligned_cols=79 Identities=10% Similarity=0.130 Sum_probs=40.3
Q ss_pred eeecCCeEEEEeEEccc-CC-CeEEEEECC-EEeccccce-----eeEE--e-EecCcceEEEEEEcCCCCC-CCEEEEE
Q psy9145 22 LSVLGHKIVFICMAKGK-PR-PHITWFKDG-VELYAHMYV-----NLHE--W-HYGTDRIKSKIEIDPATQM-DAGIYEC 89 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~-p~-p~i~w~~~g-~~~~~~~~~-----~~~~--~-~~~~~~~~~~l~i~~~~~~-~~g~y~C 89 (111)
..+.++.+.|.|.+.++ |. ..+.|...+ ..+...... +... . ..........+.+..++.. ......|
T Consensus 34 p~k~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TC 113 (141)
T PHA03112 34 PTKETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTC 113 (141)
T ss_pred ccCCCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEE
Confidence 34679999999998755 54 458898543 222211100 0000 0 0011122234555666543 3447888
Q ss_pred EeecCCceeeE
Q psy9145 90 YADNMYNVDTR 100 (111)
Q Consensus 90 ~~~n~~g~~~~ 100 (111)
......+....
T Consensus 114 VL~D~~~~~k~ 124 (141)
T PHA03112 114 VLMDLDGPIKK 124 (141)
T ss_pred EEecCCchhhH
Confidence 77766655443
No 214
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=60.11 E-value=33 Score=20.16 Aligned_cols=36 Identities=17% Similarity=0.118 Sum_probs=26.4
Q ss_pred EEEEcCCCCCCCEEEEEEeecCCceeeEEEEEEEEE
Q psy9145 73 KIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFSI 108 (111)
Q Consensus 73 ~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~ 108 (111)
-|.|.+.+..|+|.|.-.++-.-.....-+.+.+.+
T Consensus 125 lL~i~~p~~~dsG~Y~lRV~l~~~~~~d~F~~~v~v 160 (161)
T PF01688_consen 125 LLRIRNPRPEDSGIYYLRVWLDGANKADVFRLSVFV 160 (161)
T ss_pred EEEeCCCCcccceEEEEEEEECCCCCCcEEEEeeee
Confidence 588999999999999988775555555555555543
No 215
>PF10430 Ig_Tie2_1: Tie-2 Ig-like domain 1; InterPro: IPR018941 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. Angiogenesis is a physiological process whereby new blood vessels are formed from existing ones. It is essential for tissue repair and regeneration during wound healing but also plays important roles in many pathological processes including tumor growth and metastasis [, ]. Angiogenesis is regulated in part by the receptor protein tyrosine kinase Tie2 and its ligands, the angiopoietins. The angiopoietin-binding site is harbord by the N-terminal two immunoglobulin-like (Ig-like) domains of Tie2 []. The angiopoietin-1 receptor contains the Tie-2 Ig-like domain. This protein is a tyrosine-kinase transmembrane receptor for angiopoietin 1. It probably regulates endothelial cell proliferation, differentiation and guides the proper patterning of endothelial cells during blood vessel formation. Tie2 contains not two but three immunoglobulin domains. They fold together with the three epidermal growth factor domains to form a compact, arrowhead-shaped structure [].; GO: 0004714 transmembrane receptor protein tyrosine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation, 0007169 transmembrane receptor protein tyrosine kinase signaling pathway, 0005887 integral to plasma membrane; PDB: 2GY7_B 2GY5_A.
Probab=58.96 E-value=25 Score=18.44 Aligned_cols=34 Identities=24% Similarity=0.209 Sum_probs=14.7
Q ss_pred cceeeccccceeecceeecCCeEEEEeEEcccCCCe-EEEEE
Q psy9145 7 SLSLKRSCQQVKYFPLSVLGHKIVFICMAKGKPRPH-ITWFK 47 (111)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~-i~w~~ 47 (111)
++.++.+.+.+ ......|.|.+.+...+. +..-+
T Consensus 3 DliliNs~Plv-------s~~etSL~Ci~s~W~s~esitigr 37 (96)
T PF10430_consen 3 DLILINSLPLV-------SNSETSLTCIASDWSSHESITIGR 37 (96)
T ss_dssp -EEEEEC-SEE--------SS-EEEEEEE-SS--SS--EEEE
T ss_pred ceEEecCcccc-------ccCceeEEEEecCCcCCCcEEecc
Confidence 34555555533 223348999998765543 44333
No 216
>PF15096 G6B: G6B family
Probab=55.97 E-value=9.9 Score=22.85 Aligned_cols=17 Identities=18% Similarity=0.538 Sum_probs=13.5
Q ss_pred eecCCeEEEEeEEcccC
Q psy9145 23 SVLGHKIVFICMAKGKP 39 (111)
Q Consensus 23 ~~~g~~~~l~C~~~~~p 39 (111)
-..|+.+++.|.....|
T Consensus 8 GrPGDRVnlSCvGVs~p 24 (224)
T PF15096_consen 8 GRPGDRVNLSCVGVSHP 24 (224)
T ss_pred CCCCCeeeeeeccCCCc
Confidence 36899999999876554
No 217
>KOG1026|consensus
Probab=55.61 E-value=8 Score=28.41 Aligned_cols=71 Identities=15% Similarity=0.155 Sum_probs=44.2
Q ss_pred eeecCCeEEEEeEEcccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeEE
Q psy9145 22 LSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRT 101 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 101 (111)
.+..|..+.+.|...+.+.|.+.|+..+.......... .+.... ..-..++.|.+.|..|.....
T Consensus 203 ~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~-------------~~c~~~--~~~~~~~~c~~E~~~~~~~~~ 267 (774)
T KOG1026|consen 203 TVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTS-------------SLCRSE--CEVLENDLCIAENAVARSNPS 267 (774)
T ss_pred hhcccchheeeeecccCCCcceeeecccccccCCCccc-------------cccccc--ceeeechhhHHHHhhhhcCce
Confidence 45688899999999999999999987654332211100 000000 011223889888888887766
Q ss_pred EEEEEE
Q psy9145 102 FKTDFS 107 (111)
Q Consensus 102 ~~l~v~ 107 (111)
+.+.+.
T Consensus 268 v~~~~~ 273 (774)
T KOG1026|consen 268 ILLVVD 273 (774)
T ss_pred eeeEEe
Confidence 665554
No 218
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=53.63 E-value=71 Score=22.00 Aligned_cols=36 Identities=6% Similarity=0.045 Sum_probs=26.0
Q ss_pred EEEEEcCCCCCCCEEEEEEee-cCCceeeEEEEEEEE
Q psy9145 72 SKIEIDPATQMDAGIYECYAD-NMYNVDTRTFKTDFS 107 (111)
Q Consensus 72 ~~l~i~~~~~~~~g~y~C~~~-n~~g~~~~~~~l~v~ 107 (111)
-.+.+.+++..+.|.|.|... +........+.|.|.
T Consensus 81 Ysf~~~Nvs~sdEGrYrCIFYLn~~EtyrH~I~vrVm 117 (500)
T PHA02914 81 YSFIEENIGEHEDGDFKCIFYLGDNESHKHEILVRKA 117 (500)
T ss_pred eEEEecCcccccCCcEEEEEEeCCceeEEEEEEEEEc
Confidence 467888899999999999776 444455556666543
No 219
>COG5475 Uncharacterized small protein [Function unknown]
Probab=48.30 E-value=31 Score=16.35 Aligned_cols=16 Identities=38% Similarity=0.690 Sum_probs=13.0
Q ss_pred EEEEEEeecCCceeeE
Q psy9145 85 GIYECYADNMYNVDTR 100 (111)
Q Consensus 85 g~y~C~~~n~~g~~~~ 100 (111)
|.|.|...+..|.-..
T Consensus 29 Gmy~C~Wf~g~g~~~~ 44 (60)
T COG5475 29 GMYECRWFDGYGVKRE 44 (60)
T ss_pred CeEEEEEecCCCcccc
Confidence 8999999998885443
No 220
>PHA03291 envelope glycoprotein I; Provisional
Probab=45.10 E-value=95 Score=20.96 Aligned_cols=37 Identities=11% Similarity=0.065 Sum_probs=28.3
Q ss_pred EEEEEcCCCCCCCEEEEEEeecCCceeeEEEEEEEEE
Q psy9145 72 SKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFSI 108 (111)
Q Consensus 72 ~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~ 108 (111)
--|.+.+.+..|+|.|...++-.......-+.|.+.+
T Consensus 129 vLL~i~~P~~~DsGiYvLRV~vdgat~adlF~lg~~~ 165 (401)
T PHA03291 129 PLLRARGAARAVVGLYVLRVWVEGATNASLFPLGLAA 165 (401)
T ss_pred eEEEecCCCcccceeEEEEEEeCCCcccceEEEeeee
Confidence 3578889999999999998887666555566666664
No 221
>PHA03283 envelope glycoprotein E; Provisional
Probab=42.74 E-value=97 Score=22.08 Aligned_cols=35 Identities=23% Similarity=0.207 Sum_probs=25.8
Q ss_pred EEEEEcCCCCCCCEEEEEEeecCCceeeEEEEEEE
Q psy9145 72 SKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDF 106 (111)
Q Consensus 72 ~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v 106 (111)
+.+.|.+.+.+++|.|.....+..+.....+.|.|
T Consensus 134 ~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtV 168 (542)
T PHA03283 134 SVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTV 168 (542)
T ss_pred CeeEEEecccccCeEEEEEecCCCceEEEEEEEEe
Confidence 46889999999999999999986663333344433
No 222
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=41.77 E-value=45 Score=16.24 Aligned_cols=21 Identities=29% Similarity=0.795 Sum_probs=12.6
Q ss_pred eecCCeEEEEeEEcccCCCeEEEEE
Q psy9145 23 SVLGHKIVFICMAKGKPRPHITWFK 47 (111)
Q Consensus 23 ~~~g~~~~l~C~~~~~p~p~i~w~~ 47 (111)
+..|+...| .|.+...+.|++
T Consensus 2 v~~G~N~TL----~Gp~~~~V~Wy~ 22 (63)
T PF02440_consen 2 VTVGSNVTL----VGPPDGPVTWYK 22 (63)
T ss_pred EeEcCcEEE----eCCCCCceEEEE
Confidence 346777666 343445688984
No 223
>PHA03292 envelope glycoprotein I; Provisional
Probab=41.18 E-value=1.1e+02 Score=20.80 Aligned_cols=38 Identities=13% Similarity=0.069 Sum_probs=27.4
Q ss_pred EEEEEcCCCCCCCEEEEEEeecCCceeeEEEEEEEEEE
Q psy9145 72 SKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFSIT 109 (111)
Q Consensus 72 ~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~ 109 (111)
.-|.|.+.+..|+|.|.-.++-.-.....-+.+.+.+.
T Consensus 128 vLL~I~~P~~~DSGiY~LRV~Ldga~~aDvF~lsvfVy 165 (413)
T PHA03292 128 VLLNITGPQPADSGAYILRVKLDHAPTADVFGLSAFVY 165 (413)
T ss_pred eEEEeCCCCcccceeEEEEEEeCCCccCceeEEEEEEe
Confidence 35889999999999999888755444445556665553
No 224
>PHA03290 envelope glycoprotein I; Provisional
Probab=39.10 E-value=1.2e+02 Score=20.34 Aligned_cols=37 Identities=19% Similarity=0.119 Sum_probs=25.2
Q ss_pred EEEEEcCCCCCCCEEEEEEeecCCceeeEEEEEEEEE
Q psy9145 72 SKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFSI 108 (111)
Q Consensus 72 ~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~ 108 (111)
.-|.+.+.+..|+|.|.-.++-.-.....-+.+.+.+
T Consensus 129 vLL~I~~P~~~DSGiY~LRV~Ldga~~sDvF~lsv~V 165 (357)
T PHA03290 129 IIFKINKPGIEDAGIYLLLVQLDHSRLFDGFFLGLNV 165 (357)
T ss_pred eEEEeCCCCcccCeeEEEEEEeCCCcccceEEEEEEE
Confidence 4588999999999999987775433333444555444
No 225
>PHA03273 envelope glycoprotein C; Provisional
Probab=38.18 E-value=1.4e+02 Score=21.03 Aligned_cols=37 Identities=14% Similarity=0.054 Sum_probs=26.3
Q ss_pred EEEEEcCCCCCCCEEEEEEeecCCceeeEEEEEEEEE
Q psy9145 72 SKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFSI 108 (111)
Q Consensus 72 ~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~ 108 (111)
..|.|..+.....|.|.....+..+.......+.|..
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~ 234 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVST 234 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEE
Confidence 3588899999999999987766666544445555543
No 226
>PF13220 DUF4028: Protein of unknown function (DUF4028)
Probab=37.35 E-value=33 Score=16.05 Aligned_cols=16 Identities=13% Similarity=0.181 Sum_probs=11.9
Q ss_pred CCCEEEEEEeecCCce
Q psy9145 82 MDAGIYECYADNMYNV 97 (111)
Q Consensus 82 ~~~g~y~C~~~n~~g~ 97 (111)
..+..+.|.++|..|.
T Consensus 8 dssnsflctvqnkng~ 23 (65)
T PF13220_consen 8 DSSNSFLCTVQNKNGD 23 (65)
T ss_pred cCCCceEEEEecccHh
Confidence 3456788999988774
No 227
>PHA03289 envelope glycoprotein I; Provisional
Probab=36.21 E-value=1.3e+02 Score=20.03 Aligned_cols=38 Identities=18% Similarity=0.166 Sum_probs=27.5
Q ss_pred EEEEEcCCCCCCCEEEEEEeecCCceeeEEEEEEEEEE
Q psy9145 72 SKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFSIT 109 (111)
Q Consensus 72 ~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~ 109 (111)
.-|.+.+.+..|+|.|.-.++-.-.....-+.+.+.+.
T Consensus 122 vLL~I~~Pr~~DSGiYyLRV~Ldga~~sDvF~lsv~Vy 159 (352)
T PHA03289 122 LLLTIIEPRMSDTGIYYIRVSLAGRNKSDIFRTSVFVC 159 (352)
T ss_pred eEEEeCCCCcccCeeEEEEEEeCCCccCceEEEEEEEE
Confidence 35888999999999999887755444445566666554
No 228
>PHA03240 envelope glycoprotein M; Provisional
Probab=33.90 E-value=40 Score=20.90 Aligned_cols=27 Identities=22% Similarity=0.028 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCCCCEEEEEEeecCCce
Q psy9145 71 KSKIEIDPATQMDAGIYECYADNMYNV 97 (111)
Q Consensus 71 ~~~l~i~~~~~~~~g~y~C~~~n~~g~ 97 (111)
+++|.|..+...|.|+|.-.-....|.
T Consensus 104 NstL~i~~vn~sd~~nYcr~k~~~~g~ 130 (258)
T PHA03240 104 NSTLIIAHLNLSDAGEYCRKKCPPKGD 130 (258)
T ss_pred cceEEEEEEeecCcchhhhccCCCCCC
Confidence 457888888889999997554444444
No 229
>PHA03282 envelope glycoprotein E; Provisional
Probab=29.84 E-value=1.7e+02 Score=20.76 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=18.7
Q ss_pred EEEEEEcCCCCCCCEEEEEEee
Q psy9145 71 KSKIEIDPATQMDAGIYECYAD 92 (111)
Q Consensus 71 ~~~l~i~~~~~~~~g~y~C~~~ 92 (111)
+.++.|.+++..|+|.|...+.
T Consensus 123 n~tl~l~~a~~~DsG~Y~L~~~ 144 (540)
T PHA03282 123 NGTLVLREARETDSGMYVLSVS 144 (540)
T ss_pred cceEEEeeccccCCceEEEEec
Confidence 3479999999999999998753
No 230
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=29.13 E-value=83 Score=15.58 Aligned_cols=21 Identities=24% Similarity=0.706 Sum_probs=12.6
Q ss_pred EEeEEcccCCCeEEEEECCEEec
Q psy9145 31 FICMAKGKPRPHITWFKDGVELY 53 (111)
Q Consensus 31 l~C~~~~~p~p~i~w~~~g~~~~ 53 (111)
+.|.... ...+.||.++..+.
T Consensus 3 ltC~s~~--sLPiswYcN~TRLl 23 (71)
T PF11049_consen 3 LTCPSNA--SLPISWYCNGTRLL 23 (71)
T ss_pred eecCCCC--CCcccEEECCceee
Confidence 5565432 33478999876553
No 231
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=25.57 E-value=1.2e+02 Score=16.04 Aligned_cols=72 Identities=11% Similarity=0.144 Sum_probs=35.7
Q ss_pred eeecCCeEEEEeEEc-ccCCCeEEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceeeE
Q psy9145 22 LSVLGHKIVFICMAK-GKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTR 100 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~-~~p~p~i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~ 100 (111)
++..|+.+.+.|... ..| -.+.|.-.-.... . ........+.+.+++. | ....|.+.-.-. +.
T Consensus 14 vV~~G~Sv~VNCStsC~~p-~~~GLET~L~k~~------~-----~~g~~W~~f~LsnV~~-d-s~~~C~~~C~g~--Q~ 77 (91)
T PF03921_consen 14 VVPPGGSVWVNCSTSCPQP-EKIGLETSLSKTE------L-----DSGPQWKAFQLSNVTE-D-SSPLCFFNCSGE--QS 77 (91)
T ss_dssp EEETTEEEEEEEEESSSS--SEEEEESSSEEEE------E-----EEETTEEEEEEEEE-S-C-EEEEEEEEETTE--EE
T ss_pred EECCCCCEEEEEcCCCCCC-CcceEEEecCCcc------c-----CCCCcEEEEEEEcccc-C-CeEEEEEEcCCe--EE
Confidence 567999999999984 222 2344432111000 0 0000123566667764 3 567788886433 33
Q ss_pred EEEEEEEEE
Q psy9145 101 TFKTDFSIT 109 (111)
Q Consensus 101 ~~~l~v~~~ 109 (111)
...+.+.++
T Consensus 78 ~~~~~ItVY 86 (91)
T PF03921_consen 78 SASANITVY 86 (91)
T ss_dssp EEEEEEEEE
T ss_pred EeEEeeEEe
Confidence 334444443
No 232
>KOG0613|consensus
Probab=23.95 E-value=67 Score=25.35 Aligned_cols=75 Identities=8% Similarity=-0.093 Sum_probs=48.8
Q ss_pred eeecCCeEEEEeEEcccCCCe-EEEEECCEEeccccceeeEEeEecCcceEEEEEEcCCCCCCCEEEEEEeecCCceee
Q psy9145 22 LSVLGHKIVFICMAKGKPRPH-ITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT 99 (111)
Q Consensus 22 ~~~~g~~~~l~C~~~~~p~p~-i~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~ 99 (111)
.+..+..+.+.|...+.+.|. +.|++.+............ +.+......+.+..+...+.+.|.|-+.|..|...
T Consensus 345 ~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~ 420 (1205)
T KOG0613|consen 345 TARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPC---PVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQ 420 (1205)
T ss_pred ccccCcceeecccccCCcCCchheeeccccccccccccccc---ccccccCcchhhhhcCcccccccccceeccCCccc
Confidence 345667788899998888887 8898755433322211110 11111123566777788889999999999998654
No 233
>PHA03270 envelope glycoprotein C; Provisional
Probab=23.33 E-value=2.7e+02 Score=19.55 Aligned_cols=35 Identities=14% Similarity=0.049 Sum_probs=25.1
Q ss_pred EEEcCCCCCCCEEEEEEeecCCceeeEEEEEEEEE
Q psy9145 74 IEIDPATQMDAGIYECYADNMYNVDTRTFKTDFSI 108 (111)
Q Consensus 74 l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~ 108 (111)
|.|..++....|.|.-...+..+.....-.+.|.+
T Consensus 184 L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~ 218 (466)
T PHA03270 184 LVIQELTLATQGMYYWARGPADRPHRYGTWTRVRM 218 (466)
T ss_pred EEEEEcccccceEEEEEEecCCCceeeeeEEEEEE
Confidence 88889999999999999887666443333344443
No 234
>PHA03286 envelope glycoprotein E; Provisional
Probab=20.46 E-value=2.9e+02 Score=19.56 Aligned_cols=30 Identities=27% Similarity=0.330 Sum_probs=24.3
Q ss_pred EEEEEcCCCCCCCEEEEEEeecCCceeeEE
Q psy9145 72 SKIEIDPATQMDAGIYECYADNMYNVDTRT 101 (111)
Q Consensus 72 ~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 101 (111)
..+.|.+.+.+++|.|.....|..|....+
T Consensus 127 ~~L~I~nAt~qnaGiYtly~rnd~~~~~~~ 156 (492)
T PHA03286 127 KELTILNASSQNAGIYIRYSRNGTRTAVMD 156 (492)
T ss_pred CceEEeeccccccceEEEEEcCCCCcEEEE
Confidence 468889999999999999999877654443
Done!