RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9145
(111 letters)
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 78.2 bits (193), Expect = 2e-20
Identities = 20/91 (21%), Positives = 31/91 (34%)
Query: 16 QVKYFPLSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIE 75
+ + H KG P+P + WF +G L Y+ ++
Sbjct: 6 TITFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQ 65
Query: 76 IDPATQMDAGIYECYADNMYNVDTRTFKTDF 106
+D T M+ G Y A N Y D + F
Sbjct: 66 LDNPTHMNNGDYTLIAKNEYGKDEKQISAHF 96
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 71.1 bits (174), Expect = 2e-17
Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 2/85 (2%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYA--HMYVNLHEWHYGTDRIKSKIEIDPATQ 81
V H G+P P + W +G L ++ E + ++ T
Sbjct: 13 VEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTH 72
Query: 82 MDAGIYECYADNMYNVDTRTFKTDF 106
++ G Y A N + + + F
Sbjct: 73 VNNGNYTLLAANPFGQASASIMAAF 97
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 69.5 bits (170), Expect = 5e-17
Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 1/91 (1%)
Query: 16 QVKYFPLSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIE 75
+V L + + +G P P + W +G L +++ + + + +
Sbjct: 10 RVVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEY-YQEGEISEGCLL 68
Query: 76 IDPATQMDAGIYECYADNMYNVDTRTFKTDF 106
+ T + G Y A N +T F
Sbjct: 69 FNKPTHYNNGNYTLIAKNPLGTANQTINGHF 99
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 66.3 bits (162), Expect = 1e-15
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G ++ + +GKPRP + W K G L + H T + + A + D+G
Sbjct: 39 GEQLNLVVPFQGKPRPQVVWTKGGAPL------DTSRVHVRTSDFDTVFFVRQAARSDSG 92
Query: 86 IYECYADNMYNVDTRTFK 103
YE DT T +
Sbjct: 93 EYELSVQIENMKDTATIR 110
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 67.8 bits (166), Expect = 2e-15
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G + GKP P ITW K + + + + T S + + + DAG
Sbjct: 119 GEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIV----TRSFTSLVFPNGVERKDAG 174
Query: 86 IYECYADNMYNVDTRTFK 103
Y A N + +D +T +
Sbjct: 175 FYVVCAKNRFGIDQKTVE 192
Score = 62.0 bits (151), Expect = 2e-13
Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 3/72 (4%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMD 83
+C G P+P + W++ G E+ A L ++ I T D
Sbjct: 17 RYQSNATLVCKVTGHPKPIVKWYRQGKEIIAD---GLKYRIQEFKGGYHQLIIASVTDDD 73
Query: 84 AGIYECYADNMY 95
A +Y+ A N
Sbjct: 74 ATVYQVRATNQG 85
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 69.2 bits (169), Expect = 3e-15
Identities = 18/78 (23%), Positives = 33/78 (42%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMD 83
G + C+A G P P I+W DG ++ + + ++ + S + I D
Sbjct: 442 EPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHAND 501
Query: 84 AGIYECYADNMYNVDTRT 101
G+Y+C A + V +
Sbjct: 502 GGLYKCIAKSKVGVAEHS 519
Score = 61.1 bits (148), Expect = 2e-12
Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
+ +C A+G P P W+K V L++ + I A D+G
Sbjct: 263 SSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGT---LIIKDAVVEDSG 319
Query: 86 IYECYADN 93
Y C +N
Sbjct: 320 KYLCVVNN 327
Score = 60.7 bits (147), Expect = 2e-12
Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 2/78 (2%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMD 83
G C A G P+P +TW K + + + + + +D + +
Sbjct: 727 AQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVE--EGTLHVDNIQKTN 784
Query: 84 AGIYECYADNMYNVDTRT 101
G Y C A N
Sbjct: 785 EGYYLCEAINGIGSGLSA 802
Score = 60.7 bits (147), Expect = 3e-12
Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 5/77 (6%)
Query: 26 GHKIVFICMAKGKPRP-HITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
G + C G P +I W DG + + + R S + I+ A
Sbjct: 634 GQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSR----VGRRGSVLTIEAVEASHA 689
Query: 85 GIYECYADNMYNVDTRT 101
G + C+A N+ T
Sbjct: 690 GNFTCHARNLAGHQQFT 706
Score = 59.2 bits (143), Expect = 8e-12
Identities = 14/68 (20%), Positives = 19/68 (27%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
C A G P P I W + + G D ++ A
Sbjct: 54 STGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQ 113
Query: 86 IYECYADN 93
+Y C A N
Sbjct: 114 VYACLARN 121
Score = 57.6 bits (139), Expect = 3e-11
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 15/70 (21%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G VF C G P ++W KDG + +S + I+ + D G
Sbjct: 358 GRPAVFTCQYTGNPIKTVSWMKDGKAIGHS---------------ESVLRIESVKKEDKG 402
Query: 86 IYECYADNMY 95
+Y+C+ N
Sbjct: 403 MYQCFVRNDR 412
Score = 54.9 bits (132), Expect = 3e-10
Identities = 18/77 (23%), Positives = 25/77 (32%), Gaps = 7/77 (9%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMD 83
V G ++ C G P I W +D L + + GT I+ + D
Sbjct: 539 VAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFP--NGTLIIE-----NVERNSD 591
Query: 84 AGIYECYADNMYNVDTR 100
Y C A N R
Sbjct: 592 QATYTCVAKNQEGYSAR 608
Score = 44.9 bits (106), Expect = 9e-07
Identities = 14/83 (16%), Positives = 25/83 (30%), Gaps = 7/83 (8%)
Query: 26 GHKIVFICMAK---GKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQM 82
G+ V C+ ++W D E Y ++ ++ I
Sbjct: 153 GNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPS---GELHIREVGPE 209
Query: 83 DA-GIYECYADNMYNVDTRTFKT 104
D Y+C + +TR T
Sbjct: 210 DGYKSYQCRTKHRLTGETRLSAT 232
Score = 27.2 bits (60), Expect = 1.4
Identities = 2/30 (6%), Positives = 5/30 (16%)
Query: 75 EIDPATQMDAGIYECYADNMYNVDTRTFKT 104
+ ++ A T
Sbjct: 2 NMPNERLKWLMLFAAVALIACGSQTLAANP 31
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 66.7 bits (163), Expect = 4e-15
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMD 83
+ G K V C G P+P ++W K L + + + E G+ + I + D
Sbjct: 113 IEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLE--SGS------LRIHNVQKED 164
Query: 84 AGIYECYADN 93
AG Y C A N
Sbjct: 165 AGQYRCVAKN 174
Score = 65.5 bits (160), Expect = 1e-14
Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMD 83
++ F+C + P+P I+W ++ + + L + Y + I D
Sbjct: 20 LVEEVATFMCAVESYPQPEISWTRNKILI------KLFDTRYSIRENGQLLTILSVEDSD 73
Query: 84 AGIYECYADNMY 95
GIY C A+N
Sbjct: 74 DGIYCCTANNGV 85
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo
sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 64.3 bits (157), Expect = 4e-15
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G + C+ G+P P + W K G +L A ++ D + + + A DAG
Sbjct: 28 GAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPA-----DGAEHGLLLTAALPTDAG 82
Query: 86 IYECYADN 93
+Y C A N
Sbjct: 83 VYVCRARN 90
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 67.8 bits (166), Expect = 4e-15
Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 5/78 (6%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G + C +G P ++W KD EL + + + + I I D G
Sbjct: 207 GADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMS-----ENFLTSIHILNVDSADIG 261
Query: 86 IYECYADNMYNVDTRTFK 103
Y+C A N T
Sbjct: 262 EYQCKASNDVGSYTCVGS 279
Score = 64.4 bits (157), Expect = 8e-14
Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 5/78 (6%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G F C G ITW KD E+ + + + + T+ DAG
Sbjct: 20 GESGTFKCHVTGTAPIKITWAKDNREI-----RPGGNYKMTLVENTATLTVLKVTKGDAG 74
Query: 86 IYECYADNMYNVDTRTFK 103
Y CYA N+ D+ + +
Sbjct: 75 QYTCYASNVAGKDSCSAQ 92
Score = 61.7 bits (150), Expect = 7e-13
Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 5/68 (7%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
+ C G P + W+KD E+ + + +E+ + D+G
Sbjct: 114 DEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMS-----FVESVAVLEMYNLSVEDSG 168
Query: 86 IYECYADN 93
Y C A N
Sbjct: 169 DYTCEAHN 176
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family,
cellular adhesion, ligand-independent DIME mutational
analysis, transferase; HET: EPE; 1.96A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.4
Length = 182
Score = 66.0 bits (161), Expect = 5e-15
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYA--HMYVNLHEWHYGTDRIKSKIEIDPATQMD 83
G + C +G P I W KDG + +Y+ + E H+ + + + D
Sbjct: 17 GQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWI-----GFLSLKSVERSD 71
Query: 84 AGIYECYADN 93
AG Y C ++
Sbjct: 72 AGRYWCQVED 81
Score = 51.0 bits (122), Expect = 3e-09
Identities = 11/71 (15%), Positives = 21/71 (29%), Gaps = 15/71 (21%)
Query: 26 GHKIVFICMAKGKPRP-HITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
C A G P P I W++ ++ S ++ +
Sbjct: 113 NAPFQLSCEAVGPPEPVTIVWWRGTTKI--------------GGPAPSPSVLNVTGVTQS 158
Query: 85 GIYECYADNMY 95
++ C A N+
Sbjct: 159 TMFSCEAHNLK 169
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 64.3 bits (157), Expect = 5e-15
Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 5/68 (7%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G F C G+P P +TW + G L + + KS EI D G
Sbjct: 29 GESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTT-----TKYKSTFEISSVQASDEG 83
Query: 86 IYECYADN 93
Y +N
Sbjct: 84 NYSVVVEN 91
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 63.5 bits (155), Expect = 7e-15
Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G + C G+P P +TW G ++++ +H + + I + D G
Sbjct: 20 GKVLTVACAFTGEPTPEVTWSCGGRKIHSQ---EQGRFHIENTDDLTTLIIMDVQKQDGG 76
Query: 86 IYECYADN 93
+Y N
Sbjct: 77 LYTLSLGN 84
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 63.6 bits (155), Expect = 8e-15
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
+ + F C A G P P + W K+G E + ++ + ++ D G
Sbjct: 23 ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ----HWSLIMESVVPSDKG 78
Query: 86 IYECYADNMY 95
Y C +N Y
Sbjct: 79 NYTCVVENEY 88
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 63.6 bits (155), Expect = 9e-15
Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 9/77 (11%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVEL-YAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
+ C A G P P I+W K+G + E GT ++I D
Sbjct: 23 DGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQE--QGT------LQIKNLRISDT 74
Query: 85 GIYECYADNMYNVDTRT 101
G Y C A + + +
Sbjct: 75 GTYTCVATSSSGETSWS 91
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 65.5 bits (160), Expect = 1e-14
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMD 83
+ G F G P P ++WF+DG + L ++K+ I T+ +
Sbjct: 18 LEGSTATFEAHISGFPVPEVSWFRDGQVISTS---TLPGVQISFSDGRAKLTIPAVTKAN 74
Query: 84 AGIYECYADN 93
+G Y A N
Sbjct: 75 SGRYSLKATN 84
Score = 63.6 bits (155), Expect = 6e-14
Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G ++ G P P + +++DG E+ + + + + + + I A D+G
Sbjct: 118 GSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQ-----EGDLYSLLIAEAYPEDSG 172
Query: 86 IYECYADN 93
Y A N
Sbjct: 173 TYSVNATN 180
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 65.6 bits (160), Expect = 1e-14
Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 7/80 (8%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMD 83
G ++ F C A G P P I+WF++G + Y +++ + D
Sbjct: 17 ERGEEMTFSCRASGSPEPAISWFRNGKLI-------EENEKYILKGSNTELTVRNIINSD 69
Query: 84 AGIYECYADNMYNVDTRTFK 103
G Y C A N D +
Sbjct: 70 GGPYVCRATNKAGEDEKQAF 89
Score = 65.2 bits (159), Expect = 1e-14
Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 2/80 (2%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFK--DGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQ 81
++ +C A+G+P P ITW + DG S + I
Sbjct: 107 YENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKL 166
Query: 82 MDAGIYECYADNMYNVDTRT 101
D+G Y+C A + ++
Sbjct: 167 SDSGRYDCEAASRIGGHQKS 186
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 63.5 bits (155), Expect = 1e-14
Identities = 14/78 (17%), Positives = 22/78 (28%), Gaps = 5/78 (6%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G + G TW K ++ ++ + G SK+ I A Q G
Sbjct: 22 GESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENG-----SKLTILAARQEHCG 76
Query: 86 IYECYADNMYNVDTRTFK 103
Y +N
Sbjct: 77 CYTLLVENKLGSRQAQVN 94
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 67.2 bits (164), Expect = 1e-14
Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMD 83
G + CM P + +FK+G ++ + + + + + + D
Sbjct: 225 KAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKR---LLFKTTLPED 281
Query: 84 AGIYECYADN 93
G+Y C DN
Sbjct: 282 EGVYTCEVDN 291
Score = 59.2 bits (143), Expect = 8e-12
Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 16/71 (22%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIK---SKIEIDPATQM 82
G + C G P P++ W + L R S + I
Sbjct: 324 GQDVTIPCKVTGLPAPNVVWSHNAKPL-------------SGGRATVTDSGLVIKGVKNG 370
Query: 83 DAGIYECYADN 93
D G Y C A N
Sbjct: 371 DKGYYGCRATN 381
Score = 58.0 bits (140), Expect = 2e-11
Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 7/71 (9%)
Query: 26 GHKIVFICMAKGKPRP-HITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
+ V C+ +G + +W KDG + G+ + D
Sbjct: 21 NNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGS------LVFLRPQASDE 74
Query: 85 GIYECYADNMY 95
G Y+C+A+
Sbjct: 75 GHYQCFAETPA 85
Score = 48.4 bits (115), Expect = 4e-08
Identities = 15/84 (17%), Positives = 22/84 (26%), Gaps = 9/84 (10%)
Query: 24 VLGHKIVFICM-AKGKPRPHITWFKDGVELYAHMYVNLHEWHY-----GTDRIKSKIEID 77
+ G C+ P+P ITW K + V + G +
Sbjct: 113 IEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTI---VT 169
Query: 78 PATQMDAGIYECYADNMYNVDTRT 101
D Y C A N +
Sbjct: 170 KEDVSDIYKYVCTAKNAAVDEEVV 193
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 65.7 bits (160), Expect = 1e-14
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 4/78 (5%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
+ + F C A G P P + W K+G E + ++ + ++ D G
Sbjct: 34 ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI----MESVVPSDKG 89
Query: 86 IYECYADNMYNVDTRTFK 103
Y C +N Y T+
Sbjct: 90 NYTCVVENEYGSINHTYH 107
Score = 61.5 bits (149), Expect = 6e-13
Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 6/76 (7%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHM------YVNLHEWHYGTDRIKSKIEID 77
V+G + F+C +PHI W K + + Y+ + + + +
Sbjct: 131 VVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALF 190
Query: 78 PATQMDAGIYECYADN 93
T+ DAG Y C N
Sbjct: 191 NVTEADAGEYICKVSN 206
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 65.4 bits (159), Expect = 2e-14
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Query: 24 VLGHKIVFICMA-KGKPRPHITWFKDGVELY--AHMYVNLHEWHYGTDRIKSKIEIDPAT 80
+G++ V C G P TWFKDG+ + Y + ++ DP +
Sbjct: 120 TIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLS 179
Query: 81 QMDAGIYECYADNMY 95
D G Y C A N Y
Sbjct: 180 ASDTGEYSCEARNGY 194
Score = 61.9 bits (150), Expect = 3e-13
Identities = 14/71 (19%), Positives = 22/71 (30%), Gaps = 3/71 (4%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIK---SKIEIDPATQM 82
+ + C G P + W D + + N DR+ + I T+
Sbjct: 19 NNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTRE 78
Query: 83 DAGIYECYADN 93
D G Y C
Sbjct: 79 DTGTYTCMVSE 89
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 66.5 bits (162), Expect = 2e-14
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G + C G P P ++W K+ L + + NL T + I+ + D+G
Sbjct: 237 GKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRT----AYFTINGVSTADSG 292
Query: 86 IYECYADNMYNVDTRTFK 103
Y N Y +T F
Sbjct: 293 KYGLVVKNKYGSETSDFT 310
Score = 54.1 bits (130), Expect = 5e-10
Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 18/84 (21%)
Query: 26 GHKIVFICMAKG-KPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIK-----SKIEIDPA 79
++ C K HI W+KD E+ ++ + I
Sbjct: 21 ECNVLLKCKVANIKKETHIVWYKDEREISV------------DEKHDFKDGICTLLITEF 68
Query: 80 TQMDAGIYECYADNMYNVDTRTFK 103
++ DAGIYE + D K
Sbjct: 69 SKKDAGIYEVILKDDRGKDKSRLK 92
Score = 51.8 bits (124), Expect = 2e-09
Identities = 10/74 (13%), Positives = 22/74 (29%), Gaps = 5/74 (6%)
Query: 30 VFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYEC 89
++ + + W +G + V G + ++I+ T D G Y
Sbjct: 127 LYSFVTYYVEDLKVNWSHNGSAIRYSDRV-----KTGVTGEQIWLQINEPTPNDKGKYVM 181
Query: 90 YADNMYNVDTRTFK 103
+ +T
Sbjct: 182 ELFDGKTGHQKTVD 195
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 64.9 bits (158), Expect = 2e-14
Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 4/78 (5%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G + C G P P ++W K+ L + NL T + I+ + D+G
Sbjct: 132 GKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRT----AYFTINGVSTADSG 187
Query: 86 IYECYADNMYNVDTRTFK 103
Y N Y +T F
Sbjct: 188 KYGLVVKNKYGSETSDFT 205
Score = 52.6 bits (126), Expect = 8e-10
Identities = 11/79 (13%), Positives = 21/79 (26%), Gaps = 6/79 (7%)
Query: 26 GHKIVFIC-MAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
I + + W +G + V G + ++I+ T D
Sbjct: 17 AEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRV-----KTGVTGEQIWLQINEPTPNDK 71
Query: 85 GIYECYADNMYNVDTRTFK 103
G Y + +T
Sbjct: 72 GKYVMELFDGKTGHQKTVD 90
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 62.3 bits (152), Expect = 2e-14
Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 8/68 (11%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G V C +G P P ITW +G + ++ I A D G
Sbjct: 26 GQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVA--------ELHIQDALPEDHG 77
Query: 86 IYECYADN 93
Y C A+N
Sbjct: 78 TYTCLAEN 85
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 66.2 bits (161), Expect = 2e-14
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
+ + F C A G P P I+W K+G E + + + + ++ D G
Sbjct: 138 ANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQ----WSLVMESVVPSDRG 193
Query: 86 IYECYADNMYNVDTRTFK 103
Y C +N + +T+
Sbjct: 194 NYTCVVENKFGSIRQTYT 211
Score = 60.8 bits (147), Expect = 2e-12
Identities = 21/78 (26%), Positives = 28/78 (35%), Gaps = 8/78 (10%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVEL--------YAHMYVNLHEWHYGTDRIKSKIE 75
VLG + F C +PHI W K ++ V TD+ +
Sbjct: 235 VLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLS 294
Query: 76 IDPATQMDAGIYECYADN 93
+ T DAG Y C A N
Sbjct: 295 LHNVTFEDAGEYTCLAGN 312
Score = 56.9 bits (137), Expect = 4e-11
Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 16/74 (21%)
Query: 26 GHKIVFICMAK-GKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIK---SKIEIDPATQ 81
G + C G P W KDG L ++R+ ++++ A+
Sbjct: 23 GDAVELSCPPPGGGPMGPTVWVKDGTGLVP------------SERVLVGPQRLQVLNASH 70
Query: 82 MDAGIYECYADNMY 95
D+G Y C
Sbjct: 71 EDSGAYSCRQRLTQ 84
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 64.7 bits (158), Expect = 2e-14
Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 5/70 (7%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMD 83
LG C G+P P I W++ G EL + D + + Q D
Sbjct: 20 KLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSS-----DGRTHTLTVMTEEQED 74
Query: 84 AGIYECYADN 93
G+Y C A N
Sbjct: 75 EGVYTCIATN 84
Score = 61.6 bits (150), Expect = 3e-13
Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 4/80 (5%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMD 83
+G + M G+P P +TWF L + + T+ + + +
Sbjct: 116 AVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIEN----TEHYTHLVMKNVQRKTH 171
Query: 84 AGIYECYADNMYNVDTRTFK 103
AG Y+ N++
Sbjct: 172 AGKYKVQLSNVFGTVDAILD 191
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 66.4 bits (162), Expect = 2e-14
Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMD 83
LG F C G ITW KD E+ + + + + T+ D
Sbjct: 210 ALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENT-----ATLTVLKVTKGD 264
Query: 84 AGIYECYADNMYNVDTRTFK 103
AG Y CYA N+ D+ + +
Sbjct: 265 AGQYTCYASNVAGKDSCSAQ 284
Score = 65.2 bits (159), Expect = 6e-14
Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMD 83
+ G + C +G P ++W KD EL + + + + I I D
Sbjct: 397 LKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMS-----ENFLTSIHILNVDSAD 451
Query: 84 AGIYECYADNMYNVDTRTF 102
G Y+C A N DT
Sbjct: 452 IGEYQCKASNDVGSDTCVG 470
Score = 61.4 bits (149), Expect = 1e-12
Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 5/76 (6%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G I C G P I W+K+ +L + + + + I+ D G
Sbjct: 20 GEPITLQCKVDGTPEIRIAWYKEHTKL-----RSAPAYKMQFKNNVASLVINKVDHSDVG 74
Query: 86 IYECYADNMYNVDTRT 101
Y C A+N +
Sbjct: 75 EYTCKAENSVGAVASS 90
Score = 60.2 bits (146), Expect = 4e-12
Identities = 13/78 (16%), Positives = 22/78 (28%), Gaps = 4/78 (5%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G ++ +G + WFKD E+ + ++ A +AG
Sbjct: 492 GEEVQLQATIEGAEPISVAWFKDKGEIVR----ESDNIWISYSENIATLQFSRAEPANAG 547
Query: 86 IYECYADNMYNVDTRTFK 103
Y C N
Sbjct: 548 KYTCQIKNEAGTQECFAT 565
Score = 59.0 bits (143), Expect = 1e-11
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 5/68 (7%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
+ C G P + W+KD E+ ++ + +E+ + D+G
Sbjct: 306 DEHTRYECKIGGSPEIKVLWYKDETEI-----QESSKFRMSFVESVAVLEMYNLSVEDSG 360
Query: 86 IYECYADN 93
Y C A N
Sbjct: 361 DYTCEAHN 368
Score = 57.1 bits (138), Expect = 4e-11
Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 5/78 (6%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G + F C G ++W+KDG L + + ++I Q G
Sbjct: 116 GFPVAFECRINGSEPLQVSWYKDGELL-----KDDANLQTSFIHNVATLQILQTDQSHVG 170
Query: 86 IYECYADNMYNVDTRTFK 103
Y C A N + + K
Sbjct: 171 QYNCSASNPLGTASSSAK 188
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural
protein, cell membrane, cytoplasm, cytoskeleton,
disease mutation, immunoglobulin domain; NMR {Homo
sapiens}
Length = 100
Score = 62.0 bits (151), Expect = 3e-14
Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G G P P ++W+ +G + + + G + + DAG
Sbjct: 20 GRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGL----HSLIFEVVRASDAG 75
Query: 86 IYECYADN 93
Y C A N
Sbjct: 76 AYACVAKN 83
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 65.0 bits (158), Expect = 3e-14
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
+ + F C A G P P I+W K+G E + + + + + ++ D G
Sbjct: 30 ANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQ----QWSLVMESVVPSDRG 85
Query: 86 IYECYADNMYNVDTRTFK 103
Y C +N + +T+
Sbjct: 86 NYTCVVENKFGSIRQTYT 103
Score = 59.6 bits (144), Expect = 3e-12
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVN-------LHEWHYGTDRIKSKIEI 76
VLG + F C +PHI W K + + + L W + ++ +
Sbjct: 127 VLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRL 186
Query: 77 DPATQMDAGIYECYADN 93
++ D G Y C A N
Sbjct: 187 ANVSERDGGEYLCRATN 203
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 64.6 bits (157), Expect = 3e-14
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
Query: 24 VLGHKIVFICMA-KGKPRPHITWFKDGVELY---AHMYVNLHEWHYGTDRIKSKIEIDPA 79
+G++ V C G P +WFKDG+ + A + D + DP
Sbjct: 117 TIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPV 176
Query: 80 TQMDAGIYECYADNMYNVDTRT 101
T D+G Y C A N Y R+
Sbjct: 177 TAFDSGEYYCQAQNGYGTAMRS 198
Score = 58.8 bits (142), Expect = 5e-12
Identities = 16/73 (21%), Positives = 20/73 (27%), Gaps = 3/73 (4%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIK---SKIEIDPAT 80
I C G P + W A + N DR+ S I T
Sbjct: 14 PENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVT 73
Query: 81 QMDAGIYECYADN 93
+ D G Y C
Sbjct: 74 RKDNGEYTCMVSE 86
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 61.9 bits (151), Expect = 3e-14
Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
F A G+PRP W KDG + L E D+ +EI D+G
Sbjct: 21 DSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSE-----DKGGFFLEIHKTDTSDSG 75
Query: 86 IYECYADN 93
+Y C N
Sbjct: 76 LYTCTVKN 83
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted
in U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 62.5 bits (152), Expect = 3e-14
Identities = 22/74 (29%), Positives = 27/74 (36%), Gaps = 15/74 (20%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSK----IEIDPA 79
+ V C+A G P P I W KDGV + RIK ++I A
Sbjct: 21 AVDGTFVLSCVATGSPVPTILWRKDGVLVST-----------QDSRIKQLENGVLQIRYA 69
Query: 80 TQMDAGIYECYADN 93
D G Y C A
Sbjct: 70 KLGDTGRYTCIAST 83
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 61.6 bits (150), Expect = 4e-14
Identities = 14/78 (17%), Positives = 21/78 (26%), Gaps = 5/78 (6%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G G P P TW + + + I A + D+G
Sbjct: 17 GFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVD-----AKSSTTSIFFPSAKRADSG 71
Query: 86 IYECYADNMYNVDTRTFK 103
Y+ N D F+
Sbjct: 72 NYKLKVKNELGEDEAIFE 89
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 64.1 bits (156), Expect = 5e-14
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
+C A G P P ITWFKD + + N ++I+ + + D G
Sbjct: 123 TRTATMLCAASGNPDPEITWFKDFLPV--DTSNNNGRIKQLRSESIGALQIEQSEESDQG 180
Query: 86 IYECYADNM 94
YEC A N
Sbjct: 181 KYECVATNS 189
Score = 59.1 bits (143), Expect = 4e-12
Identities = 24/72 (33%), Positives = 28/72 (38%), Gaps = 7/72 (9%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELY--AHMYVNLHEWHYGTDRIKSKIEIDPATQ 81
V G FIC A G PRP I W K G ++ + + RI T
Sbjct: 19 VSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRI-----QPLRTP 73
Query: 82 MDAGIYECYADN 93
D IYEC A N
Sbjct: 74 RDEAIYECVASN 85
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 63.6 bits (155), Expect = 5e-14
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMD 83
+G F C A G+P + G ++ + V + + + ++S++ I A D
Sbjct: 15 SVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQK-----EGVRSRLTIYNANIED 69
Query: 84 AGIYECYADNMY 95
AGIY C A +
Sbjct: 70 AGIYRCQATDAK 81
Score = 60.6 bits (147), Expect = 7e-13
Identities = 13/72 (18%), Positives = 22/72 (30%), Gaps = 14/72 (19%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIK----SKIEIDPATQ 81
G +C P P ++W E+ +R + ++I +
Sbjct: 111 GEDAEVVCRVSSSPAPAVSWLYHNEEVTTI----------SDNRFAMLANNNLQILNINK 160
Query: 82 MDAGIYECYADN 93
D GIY C
Sbjct: 161 SDEGIYRCEGRV 172
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 61.3 bits (149), Expect = 6e-14
Identities = 17/68 (25%), Positives = 21/68 (30%), Gaps = 14/68 (20%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G + C +P P I W KDGV L L + D G
Sbjct: 25 GGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLI--------------LPEIGPQDQG 70
Query: 86 IYECYADN 93
Y C A +
Sbjct: 71 TYSCVATH 78
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 63.3 bits (154), Expect = 6e-14
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMD 83
G ++ F C A G P P I+WF++G + + L +++ + D
Sbjct: 111 ERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKG-------SNTELTVRNIINSD 163
Query: 84 AGIYECYADN 93
G Y C A N
Sbjct: 164 GGPYVCRATN 173
Score = 60.9 bits (148), Expect = 4e-13
Identities = 12/72 (16%), Positives = 19/72 (26%), Gaps = 6/72 (8%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMD 83
G +C P P ++W E+ ++I + D
Sbjct: 15 KQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN------LQILNINKSD 68
Query: 84 AGIYECYADNMY 95
GIY C
Sbjct: 69 EGIYRCEGRVEA 80
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 61.2 bits (149), Expect = 7e-14
Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G C G P P ++W DG + + G + I+P T DAG
Sbjct: 24 GKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGV----HSLIIEPVTSRDAG 79
Query: 86 IYECYADN 93
IY C A N
Sbjct: 80 IYTCIATN 87
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 60.9 bits (148), Expect = 9e-14
Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 16/81 (19%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIK---SKIEIDPATQM 82
G + C + I W +DGV+L ++R + ++E+ +
Sbjct: 18 GDLLQLRCRLRDDV-QSINWLRDGVQLAE------------SNRTRITGEEVEVQDSVPA 64
Query: 83 DAGIYECYADNMYNVDTRTFK 103
D+G+Y C + DT F
Sbjct: 65 DSGLYACVTSSPSGSDTTYFS 85
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1 (isoform 2); hydrolase, immunoglobulin domain,
nucleus, protease; 1.15A {Homo sapiens}
Length = 91
Score = 60.4 bits (147), Expect = 9e-14
Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 14/68 (20%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G +V C+A G P PH WFK+ + L T K + G
Sbjct: 18 GSTLVLQCVAVGSPIPHYQWFKNELPL--------------THETKKLYMVPYVDLEHQG 63
Query: 86 IYECYADN 93
Y C+ N
Sbjct: 64 TYWCHVYN 71
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 64.1 bits (156), Expect = 1e-13
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 7/78 (8%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G ++ F C A G P P I+WF++G + + L +++ + D G
Sbjct: 209 GEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKG-------SNTELTVRNIINSDGG 261
Query: 86 IYECYADNMYNVDTRTFK 103
Y C A N D +
Sbjct: 262 PYVCRATNKAGEDEKQAF 279
Score = 60.6 bits (147), Expect = 2e-12
Identities = 13/76 (17%), Positives = 22/76 (28%), Gaps = 14/76 (18%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIK----SKIEIDPA 79
G +C P P ++W E+ +R + ++I
Sbjct: 111 KQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTI----------SDNRFAMLANNNLQILNI 160
Query: 80 TQMDAGIYECYADNMY 95
+ D GIY C
Sbjct: 161 NKSDEGIYRCEGRVEA 176
Score = 54.1 bits (130), Expect = 4e-10
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G F C A G+P + G ++ + V + + + ++S++ I A DAG
Sbjct: 19 GESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQK-----EGVRSRLTIYNANIEDAG 73
Query: 86 IYECYADNM 94
IY C A +
Sbjct: 74 IYRCQATDA 82
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 64.1 bits (156), Expect = 1e-13
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 13/76 (17%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIK----SKIEIDPA 79
+C A G P P ITWFKD + + + RIK ++I+ +
Sbjct: 121 ERTRTATMLCAASGNPDPEITWFKDFLPV---------DPSASNGRIKQLRSGALQIESS 171
Query: 80 TQMDAGIYECYADNMY 95
+ D G YEC A N
Sbjct: 172 EETDQGKYECVATNSA 187
Score = 61.4 bits (149), Expect = 1e-12
Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 11/78 (14%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMD 83
+ G + C+A G P P++ W + +L + G + ++ D
Sbjct: 218 MPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDM-----PVGRNVLEL------TDVKD 266
Query: 84 AGIYECYADNMYNVDTRT 101
+ Y C A + V
Sbjct: 267 SANYTCVAMSSLGVIEAV 284
Score = 60.2 bits (146), Expect = 2e-12
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYA--HMYVNLHEWHYGTDRIKSKIEIDPATQ 81
V G F+C A G P+P +TW K G ++ + + E RI+ T
Sbjct: 19 VSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPL-----RTP 73
Query: 82 MDAGIYECYADN 93
D +YEC A N
Sbjct: 74 RDENVYECVAQN 85
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 61.0 bits (148), Expect = 1e-13
Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 4/73 (5%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHY---GTDRIKSKIEIDPAT 80
G C A+G+P P I W+K G + G+ +I +
Sbjct: 22 SKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFF-LRIVHGRKS 80
Query: 81 QMDAGIYECYADN 93
+ D G+Y C A N
Sbjct: 81 RPDEGVYVCVARN 93
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 63.0 bits (153), Expect = 1e-13
Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 14/72 (19%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMD 83
+ G +V C+A G P PH WFK+ + L T K +
Sbjct: 131 MPGSTLVLQCVAVGSPIPHYQWFKNELPL--------------THETKKLYMVPYVDLEH 176
Query: 84 AGIYECYADNMY 95
G Y C+ N
Sbjct: 177 QGTYWCHVYNDR 188
Score = 60.7 bits (147), Expect = 9e-13
Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 14/68 (20%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G + C A G P WFK E+ G S++ + DAG
Sbjct: 33 GQFVKLCCRATGHPFVQYQWFKMNKEI-----------PNGNT---SELIFNAVHVKDAG 78
Query: 86 IYECYADN 93
Y C +N
Sbjct: 79 FYVCRVNN 86
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 62.9 bits (153), Expect = 1e-13
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 23 SVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQM 82
+ G+++ C P I+WF+DG L + Y N+ ++ + S +E+ P ++
Sbjct: 30 TWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSA---SYLEVTPDSEN 86
Query: 83 DAGIYECYADNMYNVDTRTFK 103
D G Y C A N ++ F
Sbjct: 87 DFGNYNCTAVNRIGQESLEFI 107
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 64.4 bits (156), Expect = 1e-13
Identities = 20/78 (25%), Positives = 28/78 (35%), Gaps = 7/78 (8%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G I C A G P P I WFKD L + L + + + I + D G
Sbjct: 681 GESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGN-------RNLTIRRVRKEDEG 733
Query: 86 IYECYADNMYNVDTRTFK 103
+Y C A ++
Sbjct: 734 LYTCQACSVLGCAKVEAF 751
Score = 62.5 bits (151), Expect = 5e-13
Identities = 14/79 (17%), Positives = 31/79 (39%), Gaps = 10/79 (12%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMD 83
+G ++ G P P I W+K+G+ L ++ + + + I ++ D
Sbjct: 343 TVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTI----------KAGHVLTIMEVSERD 392
Query: 84 AGIYECYADNMYNVDTRTF 102
G Y N + + ++
Sbjct: 393 TGNYTVILTNPISKEKQSH 411
Score = 58.2 bits (140), Expect = 2e-11
Identities = 13/100 (13%), Positives = 27/100 (27%), Gaps = 15/100 (15%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVEL---------------YAHMYVNLHEWHYGTD 68
+ C A ++TW+K G + ++ +
Sbjct: 562 TEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNST 621
Query: 69 RIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFSI 108
+E+ A+ D G Y C A + ++
Sbjct: 622 NDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTV 661
Score = 53.2 bits (127), Expect = 1e-09
Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 5/83 (6%)
Query: 26 GHKIVFICMAKGKPRPHI--TWFKDGVELYAHMYVNLHEWHYGTDRIK---SKIEIDPAT 80
G K+V C A+ + I W + VN +K S + ID T
Sbjct: 239 GEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVT 298
Query: 81 QMDAGIYECYADNMYNVDTRTFK 103
+ D G+Y C A + +
Sbjct: 299 RSDQGLYTCAASSGLMTKKNSTF 321
Score = 45.5 bits (107), Expect = 6e-07
Identities = 18/107 (16%), Positives = 26/107 (24%), Gaps = 29/107 (27%)
Query: 26 GHKIVFICMAKGKPRP-HITWFKDGVEL--------------YAHMYVNLHEWHYGTDRI 70
G C P P HI W+ E Y E G ++I
Sbjct: 438 GTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKI 497
Query: 71 --------------KSKIEIDPATQMDAGIYECYADNMYNVDTRTFK 103
K+ + + +Y+C A N R
Sbjct: 498 EVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVIS 544
Score = 45.1 bits (106), Expect = 8e-07
Identities = 9/68 (13%), Positives = 17/68 (25%), Gaps = 6/68 (8%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
+ C +G+ W + + V + I D G
Sbjct: 46 NTTLQITC--RGQRDLDWLWPNNQSGSEQRVEVTECS----DGLFCKTLTIPKVIGNDTG 99
Query: 86 IYECYADN 93
Y+C+
Sbjct: 100 AYKCFYRE 107
Score = 35.9 bits (82), Expect = 0.001
Identities = 10/81 (12%), Positives = 16/81 (19%), Gaps = 14/81 (17%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRI----KSKIEIDPATQ 81
+V C+ + + +RI K I
Sbjct: 143 NKTVVIPCLGSISNLNVSLCARYPE----------KRFVPDGNRISWDSKKGFTIPSYMI 192
Query: 82 MDAGIYECYADNMYNVDTRTF 102
AG+ C A
Sbjct: 193 SYAGMVFCEAKINDESYQSIM 213
Score = 25.1 bits (54), Expect = 5.9
Identities = 2/28 (7%), Positives = 8/28 (28%)
Query: 76 IDPATQMDAGIYECYADNMYNVDTRTFK 103
+ + ++ C +V +
Sbjct: 1 MQSKVLLAVALWLCVETRAASVGLPSVS 28
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 61.6 bits (149), Expect = 1e-13
Identities = 19/78 (24%), Positives = 25/78 (32%), Gaps = 8/78 (10%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKI--------E 75
+G + C A G P P I W+ +G I +
Sbjct: 34 WVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTIS 93
Query: 76 IDPATQMDAGIYECYADN 93
ID + D G YEC A N
Sbjct: 94 IDTLVEEDTGTYECRASN 111
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 64.1 bits (156), Expect = 1e-13
Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 8/77 (10%)
Query: 25 LGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
I F C GKP P + W K+G + Y + S + I + D
Sbjct: 326 ESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVG--------GSNLRILGVVKSDE 377
Query: 85 GIYECYADNMYNVDTRT 101
G Y+C A+N +
Sbjct: 378 GFYQCVAENEAGNAQSS 394
Score = 62.2 bits (151), Expect = 7e-13
Identities = 16/78 (20%), Positives = 24/78 (30%), Gaps = 7/78 (8%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMD 83
+ G V C G P P TW + + L Y + + I T D
Sbjct: 234 IEGKDAVLECCVSGYPPPSFTWLRGEEVI------QLRSKKYSLLGGSN-LLISNVTDDD 286
Query: 84 AGIYECYADNMYNVDTRT 101
+G Y C + +
Sbjct: 287 SGTYTCVVTYKNENISAS 304
Score = 61.4 bits (149), Expect = 1e-12
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 24 VLGHKIVFICMAKG-KPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQM 82
+ G ++ C A+ + P I W KDG+ L M + G+ I I +
Sbjct: 34 MRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLI-QNILHSRHHKP 92
Query: 83 DAGIYECYADN 93
D G+Y+C A
Sbjct: 93 DEGLYQCEASL 103
Score = 58.7 bits (142), Expect = 1e-11
Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 13/73 (17%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKS----KIEIDPATQ 81
G ++ C G P P I W K+ +L G R+ ++I
Sbjct: 136 GDTVLLKCEVIGDPMPTIHWQKNQQDLNPIP---------GDSRVVVLPSGALQISRLQP 186
Query: 82 MDAGIYECYADNM 94
D+G+Y C A N
Sbjct: 187 GDSGVYRCSARNP 199
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 64.1 bits (156), Expect = 1e-13
Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
Query: 23 SVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQM 82
S G+ I C K P I W +D + L A NL + G K +EI P +
Sbjct: 112 SWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGR---KMILEIAPTSDN 168
Query: 83 DAGIYECYADNMYNVDTRTFK 103
D G Y C A N + +
Sbjct: 169 DFGRYNCTATNHIGTRFQEYI 189
Score = 64.1 bits (156), Expect = 2e-13
Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 2/80 (2%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFK--DGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQ 81
++ +C A+G+P P ITW + DG S + I
Sbjct: 13 YENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKL 72
Query: 82 MDAGIYECYADNMYNVDTRT 101
D+G Y+C A + ++
Sbjct: 73 SDSGRYDCEAASRIGGHQKS 92
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 62.2 bits (151), Expect = 2e-13
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 9/70 (12%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMD 83
++G + C A G P P I W K + + ++ + ++I D
Sbjct: 126 LMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSG---------AVLKIFNIQLED 176
Query: 84 AGIYECYADN 93
GIYEC A+N
Sbjct: 177 EGIYECEAEN 186
Score = 43.7 bits (103), Expect = 2e-06
Identities = 11/78 (14%), Positives = 25/78 (32%), Gaps = 8/78 (10%)
Query: 21 PLSVL-GHKIVFICMA-KGKPRP-HITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEID 77
+ V G +V +C P W + ++ + + + + + + I
Sbjct: 17 EVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVF----ITMDKRRFVSQT-NGNLYIA 71
Query: 78 PATQMDAGIYECYADNMY 95
D G Y C+ +
Sbjct: 72 NVEASDKGNYSCFVSSPS 89
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 63.8 bits (155), Expect = 2e-13
Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 4/91 (4%)
Query: 4 EDSSLSLKRSCQQVKYFPLSVL-GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHE 62
+ S + PL ++ H I +C A+G P P W+K V L++
Sbjct: 204 TEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLND 263
Query: 63 WHYGTDRIKSKIEIDPATQMDAGIYECYADN 93
+ I A D+G Y C +N
Sbjct: 264 RVKQVSGT---LIIKDAVVEDSGKYLCVVNN 291
Score = 56.5 bits (136), Expect = 7e-11
Identities = 14/70 (20%), Positives = 20/70 (28%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
C A G P P I W + + G D ++ A
Sbjct: 19 STGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQ 78
Query: 86 IYECYADNMY 95
+Y C A N +
Sbjct: 79 VYACLARNQF 88
Score = 56.5 bits (136), Expect = 7e-11
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 15/69 (21%)
Query: 25 LGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
G VF C G P ++W KDG + +S + I+ + D
Sbjct: 321 FGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS---------------ESVLRIESVKKEDK 365
Query: 85 GIYECYADN 93
G+Y+C+ N
Sbjct: 366 GMYQCFVRN 374
Score = 42.2 bits (99), Expect = 7e-06
Identities = 14/86 (16%), Positives = 26/86 (30%), Gaps = 8/86 (9%)
Query: 21 PLSVL-GHKIVFICMAK---GKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEI 76
V+ G+ V C+ ++W D E Y ++ ++ I
Sbjct: 112 KEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPS---GELHI 168
Query: 77 DPATQMDA-GIYECYADNMYNVDTRT 101
D Y+C + +TR
Sbjct: 169 REVGPEDGYKSYQCRTKHRLTGETRL 194
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 60.5 bits (147), Expect = 2e-13
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHM-YVNLHEWHYGTDRIKSKIEIDPATQMDA 84
G + C P P + W ++ + + ++L++ + G + I + DA
Sbjct: 30 GDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGR----VTLLIKDVNKKDA 85
Query: 85 GIYECYADN 93
G Y A N
Sbjct: 86 GWYTVSAVN 94
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 62.5 bits (152), Expect = 2e-13
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMD 83
+GH ++ C A G P P+I W K+ ++ + G ++I+ + + D
Sbjct: 123 EVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPR--YSLKDGF------LQIENSREED 174
Query: 84 AGIYECYADNM 94
G YEC A+N
Sbjct: 175 QGKYECVAENS 185
Score = 58.3 bits (141), Expect = 6e-12
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 10/73 (13%)
Query: 25 LGHKIVFICMAKGKPRPHITWFKDGVELYA---HMYVNLHEWHYGTDRIKSKIEIDPATQ 81
+G F C A+G P P I W K+G ++ V G I + I+P
Sbjct: 20 VGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQP---GGISI---LRIEPVRA 73
Query: 82 M-DAGIYECYADN 93
D YEC A+N
Sbjct: 74 GRDDAPYECVAEN 86
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 63.4 bits (154), Expect = 2e-13
Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 3/80 (3%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMD 83
LG + +C A G P P ++W KDG + + S++ I + D
Sbjct: 209 NLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDS---SELTIRNVDKND 265
Query: 84 AGIYECYADNMYNVDTRTFK 103
Y C A+N +
Sbjct: 266 EAEYVCIAENKAGEQDASIH 285
Score = 58.7 bits (142), Expect = 9e-12
Identities = 13/69 (18%), Positives = 20/69 (28%), Gaps = 6/69 (8%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G V +C P I W G ++ V ++I + D G
Sbjct: 115 GEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY------LQIRGIKKTDEG 168
Query: 86 IYECYADNM 94
Y C +
Sbjct: 169 TYRCEGRIL 177
Score = 48.3 bits (115), Expect = 4e-08
Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 9/76 (11%)
Query: 24 VLGHKIVFICMAKGKPR-PHITWFK-DGVELYAHM--YVNLHEWHYGTDRIKSKIEIDPA 79
+G F+C G + I+WF +G +L + + S + I A
Sbjct: 15 SVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS-----STLTIYNA 69
Query: 80 TQMDAGIYECYADNMY 95
DAGIY+C
Sbjct: 70 NIDDAGIYKCVVTAED 85
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic
adhesion, arterial smooth muscle cells; 0.96A {Homo
sapiens}
Length = 99
Score = 60.0 bits (146), Expect = 2e-13
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G ++ +G+P+P ++W ++ + E G ++ I A + DAG
Sbjct: 20 GQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGL----CRLRILAAERGDAG 75
Query: 86 IYECYADN 93
Y C A N
Sbjct: 76 FYTCKAVN 83
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 59.7 bits (145), Expect = 3e-13
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G + F C G P+P I WFKDG ++ + + D S + +T D G
Sbjct: 23 GMPVTFTCRVAGNPKPKIYWFKDGKQISPKS--DHYTIQRDLDGTCS-LHTTASTLDDDG 79
Query: 86 IYECYADN 93
Y A N
Sbjct: 80 NYTIMAAN 87
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 59.0 bits (143), Expect = 4e-13
Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 10/77 (12%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G + C + I W +DGV+L + ++E+ + D+G
Sbjct: 24 GDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITG---------EEVEVRDSIPADSG 73
Query: 86 IYECYADNMYNVDTRTF 102
+Y C + DT F
Sbjct: 74 LYACVTSSPSGSDTTYF 90
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 62.1 bits (151), Expect = 6e-13
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAH-MYVNLHEWHYGTDRIKSKIEIDPATQM 82
+C G P+P + W++ G E+ A + + E+ G ++ I T
Sbjct: 17 RYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY----HQLIIASVTDD 72
Query: 83 DAGIYECYADN 93
DA +Y+ A N
Sbjct: 73 DATVYQVRATN 83
Score = 60.9 bits (148), Expect = 1e-12
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMD 83
+ G + GKP P ITW K + + + + T S + + + D
Sbjct: 117 LRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIV----TRSFTSLVFPNGVERKD 172
Query: 84 AGIYECYADNMYNVDTRTFK 103
AG Y A N + +D +T +
Sbjct: 173 AGFYVVCAKNRFGIDQKTVE 192
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 61.0 bits (148), Expect = 7e-13
Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Query: 24 VLGHKIVFIC-MAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQM 82
G + C KG P P + W KDGV L ++ + I +
Sbjct: 121 AKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPI 180
Query: 83 DAGIYECYADNMY 95
D G Y+C A N+
Sbjct: 181 DEGNYKCIAQNLV 193
Score = 61.0 bits (148), Expect = 8e-13
Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 1/70 (1%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMD 83
C +GKP P I WFKDG + + H + + + + D
Sbjct: 22 KKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNE-KKSHRVQFKDGALFFYRTMQGKKEQD 80
Query: 84 AGIYECYADN 93
G Y C A N
Sbjct: 81 GGEYWCVAKN 90
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 61.0 bits (148), Expect = 7e-13
Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 8/77 (10%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHY-----GTDRIKSKIEIDP 78
G C A+G+P P I W+K G + + H G+ +I
Sbjct: 22 SKGEPATLNCKAEGRPTPTIEWYKGGERV--ETDKDDPRSHRMLLPSGSLFF-LRIVHGR 78
Query: 79 ATQMDAGIYECYADNMY 95
++ D G+Y C A N
Sbjct: 79 KSRPDEGVYVCVARNYL 95
Score = 58.3 bits (141), Expect = 7e-12
Identities = 21/73 (28%), Positives = 26/73 (35%), Gaps = 9/73 (12%)
Query: 24 VLGHKIVFICMA-KGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQM 82
+G V C +G P P I+W KDG L K+ I +
Sbjct: 124 AVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIR--------GGKLMITYTRKS 175
Query: 83 DAGIYECYADNMY 95
DAG Y C NM
Sbjct: 176 DAGKYVCVGTNMV 188
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 58.5 bits (142), Expect = 8e-13
Identities = 20/75 (26%), Positives = 25/75 (33%), Gaps = 17/75 (22%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIK-----SKIEIDP 78
+G I C A G P P I WFKD L I + I
Sbjct: 23 SIGESIEVSCTASGNPPPQIMWFKDNETLVE------------DSGIVLKDGNRNLTIRR 70
Query: 79 ATQMDAGIYECYADN 93
+ D G+Y C A +
Sbjct: 71 VRKEDEGLYTCQACS 85
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 61.6 bits (149), Expect = 8e-13
Identities = 15/83 (18%), Positives = 25/83 (30%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G I +C+ G + W E + I+S + I A D+G
Sbjct: 196 GENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSG 255
Query: 86 IYECYADNMYNVDTRTFKTDFSI 108
Y C N + ++
Sbjct: 256 TYTCNVTESVNDHQDEKAINITV 278
Score = 42.4 bits (99), Expect = 6e-06
Identities = 13/79 (16%), Positives = 22/79 (27%), Gaps = 10/79 (12%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
V C + W + E M S + + T +D G
Sbjct: 15 SSTFVLTCSGSAP----VVWERMSQEPPQEMAKAQD------GTFSSVLTLTNLTGLDTG 64
Query: 86 IYECYADNMYNVDTRTFKT 104
Y C ++ ++T K
Sbjct: 65 EYFCTHNDSRGLETDERKR 83
Score = 32.0 bits (72), Expect = 0.024
Identities = 8/68 (11%), Positives = 16/68 (23%), Gaps = 15/68 (22%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
+I C P+ +T + ++ D + I +
Sbjct: 110 ITEITIPCRVTD-PQLVVTLHEKKGDV---------ALPVPYDHQRGFSGIF-----EDR 154
Query: 86 IYECYADN 93
Y C
Sbjct: 155 SYICKTTI 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 60.9 bits (147), Expect = 2e-12
Identities = 15/100 (15%), Positives = 33/100 (33%), Gaps = 2/100 (2%)
Query: 5 DSSLSLKRSCQQVKYFPLSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWH 64
+ S+ + S +V H G+P P + W +G L ++
Sbjct: 240 EVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLE 299
Query: 65 YGTDRIK--SKIEIDPATQMDAGIYECYADNMYNVDTRTF 102
+ + ++ T ++ G Y A N + + +
Sbjct: 300 PAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASI 339
Score = 52.8 bits (126), Expect = 1e-09
Identities = 9/70 (12%), Positives = 23/70 (32%), Gaps = 6/70 (8%)
Query: 25 LGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
+G ++ C +G+ W +E A + + + + ++
Sbjct: 172 VGDDVLLRCQVEGRGLEQAGWILTELEQSATVM-KSGGLPSLGLTL-----ANVTSDLNR 225
Query: 85 GIYECYADNM 94
C+A+N
Sbjct: 226 KNVTCWAEND 235
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 61.0 bits (148), Expect = 2e-12
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 15/72 (20%)
Query: 25 LGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIK---SKIEIDPATQ 81
+ + + C A G+P+P W K+G L DRI+ + I
Sbjct: 309 MEESVFWECKANGRPKPTYRWLKNGDPLLT------------RDRIQIEQGTLNITIVNL 356
Query: 82 MDAGIYECYADN 93
DAG+Y+C A+N
Sbjct: 357 SDAGMYQCVAEN 368
Score = 59.1 bits (143), Expect = 9e-12
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Query: 20 FPLSVLGHKIVFICMAKGKPRPHITWFKDGVEL--YAHMYVNLHEWHYGTDRIKSKIEID 77
FPL K+ C KG P+PHI W +G ++ ++ + G+ I +
Sbjct: 17 FPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVD---GSLLI-----NN 68
Query: 78 PATQMDAGIYECYADNMY 95
P DAG Y+C A N +
Sbjct: 69 PNKTQDAGTYQCIATNSF 86
Score = 55.6 bits (134), Expect = 1e-10
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 10/71 (14%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFK-DGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQM 82
G + C A G P P I W + DG + + G +EI Q
Sbjct: 218 EKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSN---GI------LEIPNFQQE 268
Query: 83 DAGIYECYADN 93
DAG YEC A+N
Sbjct: 269 DAGSYECVAEN 279
Score = 50.2 bits (120), Expect = 1e-08
Identities = 15/87 (17%), Positives = 21/87 (24%), Gaps = 17/87 (19%)
Query: 21 PLSVL-GHKIVFICMA-KGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKS----KI 74
+SV G +V +C W + Y R S +
Sbjct: 111 TVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSY-----------QDNRRFVSQETGNL 159
Query: 75 EIDPATQMDAGIYECYADNMYNVDTRT 101
I + D G Y C N
Sbjct: 160 YIAKVEKSDVGNYTCVVTNTVTNHKVL 186
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 61.0 bits (148), Expect = 2e-12
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G + + C+A GKPRP + W +DG L + + + ++ D+G
Sbjct: 309 GSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSG---------GELRFSKLVLEDSG 359
Query: 86 IYECYADN 93
+Y+C A+N
Sbjct: 360 MYQCVAEN 367
Score = 58.7 bits (142), Expect = 1e-11
Identities = 17/70 (24%), Positives = 22/70 (31%), Gaps = 11/70 (15%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMD 83
+ G + C A G P P I W K + + I D
Sbjct: 220 LTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLS-----SEPL------LHIQNVDFED 268
Query: 84 AGIYECYADN 93
G YEC A+N
Sbjct: 269 EGTYECEAEN 278
Score = 57.6 bits (139), Expect = 3e-11
Identities = 21/78 (26%), Positives = 26/78 (33%), Gaps = 10/78 (12%)
Query: 20 FPLSVLGHKIVFICMAKGKPRPHITWFKDGVEL--YAHMYVNLHEWHYGTDRIKSKIEID 77
FP K+ C A+ P W +G EL L G I +
Sbjct: 16 FPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVA---GDLVI-----SN 67
Query: 78 PATQMDAGIYECYADNMY 95
P DAG Y+C A N
Sbjct: 68 PVKAKDAGSYQCVATNAR 85
Score = 49.9 bits (119), Expect = 1e-08
Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 15/93 (16%)
Query: 21 PLSVL-GHKIVFICMA-KGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIE--- 75
P+ + G ++F C P W + + R S+
Sbjct: 110 PVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNF---------IPADGRRFVSQTTGNL 160
Query: 76 -IDPATQMDAGIYECYADNMYNVDTRTFKTDFS 107
I D G Y C+A + + T++ + FS
Sbjct: 161 YIAKTEASDLGNYSCFATSHIDFITKSVFSKFS 193
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 60.9 bits (147), Expect = 2e-12
Identities = 12/78 (15%), Positives = 19/78 (24%), Gaps = 9/78 (11%)
Query: 25 LGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
+ F K P+ TW + I +
Sbjct: 340 QYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDN---------GYSISKFCNHKHQP 390
Query: 85 GIYECYADNMYNVDTRTF 102
G Y +A+N T+ F
Sbjct: 391 GEYIFHAENDDAQFTKMF 408
Score = 57.0 bits (137), Expect = 5e-11
Identities = 16/104 (15%), Positives = 27/104 (25%), Gaps = 9/104 (8%)
Query: 2 PTEDSSLSLKRSCQQVKYFPLSV---LGHKIVFICMAKGKPRPHITWFKDGVELYAHMYV 58
ED +L+ Y +V + I + W L +
Sbjct: 36 SPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHF 95
Query: 59 NLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTF 102
+L + I T+ AG Y + + T F
Sbjct: 96 DLQNRGVVSMVILK------MTETQAGEYLLFIQSEATNYTILF 133
Score = 54.7 bits (131), Expect = 3e-10
Identities = 12/70 (17%), Positives = 20/70 (28%), Gaps = 2/70 (2%)
Query: 26 GHKIVFICMAKGK-PRPHITWFKDGVELYAHMYVNLHEWHYG-TDRIKSKIEIDPATQMD 83
G + C A +TW + L Y + + T + + D
Sbjct: 242 GEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARND 301
Query: 84 AGIYECYADN 93
G Y C +
Sbjct: 302 TGYYTCSSSK 311
Score = 52.0 bits (124), Expect = 2e-09
Identities = 16/97 (16%), Positives = 26/97 (26%), Gaps = 11/97 (11%)
Query: 16 QVKYFPLSVL-GHKIVFICMAKGKPRPHITWFK-DGVELYAHMYVNLHEW-------HYG 66
++ P + C + G P P TW K + W +G
Sbjct: 411 NIRRKPQVLAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFG 470
Query: 67 TDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFK 103
S + + A + +C A N T
Sbjct: 471 QWVSSSTLNMSEAI--KGFLVKCCAYNSLGTSCETIL 505
Score = 43.5 bits (102), Expect = 3e-06
Identities = 8/73 (10%), Positives = 20/73 (27%), Gaps = 9/73 (12%)
Query: 21 PLSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPAT 80
+ ++ +C+++ P P + W + + K + +
Sbjct: 149 YFRKMENQDALVCISESVPEPIVEWVLCDSQ------GESCKEESPAVVKKEEKVLHEL- 201
Query: 81 QMDAGIYECYADN 93
C A N
Sbjct: 202 --FGTDIRCCARN 212
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 60.5 bits (146), Expect = 3e-12
Identities = 12/81 (14%), Positives = 20/81 (24%), Gaps = 1/81 (1%)
Query: 24 VLGHKIVFICMAKGKPRP-HITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQM 82
G + I + P+P H W + R S++ +
Sbjct: 326 NDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGT 385
Query: 83 DAGIYECYADNMYNVDTRTFK 103
+ G Y N F
Sbjct: 386 EGGTYTFLVSNSDVNAAIAFN 406
Score = 60.1 bits (145), Expect = 3e-12
Identities = 16/85 (18%), Positives = 26/85 (30%), Gaps = 7/85 (8%)
Query: 26 GHKIVFICMAKGKPRPHITWFK-------DGVELYAHMYVNLHEWHYGTDRIKSKIEIDP 78
+ C+A G P P I W+ + L+ ++ + ID
Sbjct: 421 LVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDS 480
Query: 79 ATQMDAGIYECYADNMYNVDTRTFK 103
+ G EC A N + F
Sbjct: 481 SAFKHNGTVECKAYNDVGKTSAYFN 505
Score = 58.1 bits (140), Expect = 2e-11
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 1/77 (1%)
Query: 26 GHKIVFICMAKGKPRP-HITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
G + C K + TW ++ + N ++ + I A D+
Sbjct: 226 GEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDS 285
Query: 85 GIYECYADNMYNVDTRT 101
G++ CYA+N + T
Sbjct: 286 GVFMCYANNTFGSANVT 302
Score = 38.1 bits (88), Expect = 2e-04
Identities = 12/85 (14%), Positives = 26/85 (30%), Gaps = 17/85 (20%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G +I +C G + W + ++ +++ + A + G
Sbjct: 51 GDEIRLLCTDPG----FVKWTFEILDETNENK-------------QNEWITEKAEATNTG 93
Query: 86 IYECYADNMYNVDTRTFKTDFSITF 110
Y C + + F D + F
Sbjct: 94 KYTCTNKHGLSNSIYVFVRDPAKLF 118
Score = 28.1 bits (62), Expect = 0.65
Identities = 10/71 (14%), Positives = 13/71 (18%), Gaps = 10/71 (14%)
Query: 26 GHKIVFICMAKGKPRPHITWFK--DGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMD 83
+ + C P K G L + IKS
Sbjct: 129 DNDTLVRCPL-TDPEVTNYSLKGCQGKPLPKDLRFIPDPK--AGIMIKSVKRAY-----H 180
Query: 84 AGIYECYADNM 94
C D
Sbjct: 181 RLCLHCSVDQE 191
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 58.3 bits (141), Expect = 3e-12
Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G F C +G P P + WFKD + + + G + I D
Sbjct: 56 GSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGN----CSLTISEVCGDDDA 111
Query: 86 IYECYADN 93
Y C A N
Sbjct: 112 KYTCKAVN 119
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 60.3 bits (146), Expect = 3e-12
Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 6/68 (8%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G +C A G P+P + W +G L + E T I
Sbjct: 327 GEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDT------IIFRDTQISSRA 380
Query: 86 IYECYADN 93
+Y+C N
Sbjct: 381 VYQCNTSN 388
Score = 59.9 bits (145), Expect = 5e-12
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 8/80 (10%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMD 83
+ G ++ C+A G P P I W+K G +L + + + I ++ D
Sbjct: 235 LRGMDLLLECIASGVPTPDIAWYKKGGDLPSD--------KAKFENFNKALRITNVSEED 286
Query: 84 AGIYECYADNMYNVDTRTFK 103
+G Y C A N T
Sbjct: 287 SGEYFCLASNKMGSIRHTIS 306
Score = 57.6 bits (139), Expect = 3e-11
Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 1/70 (1%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
I+ C AKG P P W ++ + + + G
Sbjct: 32 RDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGT-LVIDFRSGGRPEEYEG 90
Query: 86 IYECYADNMY 95
Y+C+A N +
Sbjct: 91 EYQCFARNKF 100
Score = 45.6 bits (108), Expect = 5e-07
Identities = 15/88 (17%), Positives = 22/88 (25%), Gaps = 18/88 (20%)
Query: 21 PLSVL-GHKIVFICMA-KGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKS----KI 74
P+ V G + C G P P I W +E R+ +
Sbjct: 125 PVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPIT-----------QDKRVSQGHNGDL 173
Query: 75 EIDPATQMDA-GIYECYADNMYNVDTRT 101
D Y C A + +
Sbjct: 174 YFSNVMLQDMQTDYSCNARFHFTHTIQQ 201
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 58.3 bits (141), Expect = 5e-12
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEI-DPATQM 82
G + C + G P P W K ++ + + + +++ I +
Sbjct: 105 NEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITE 164
Query: 83 DAGIYECYADN 93
D G YEC A N
Sbjct: 165 DPGEYECNATN 175
Score = 52.5 bits (126), Expect = 9e-10
Identities = 13/80 (16%), Positives = 21/80 (26%), Gaps = 12/80 (15%)
Query: 24 VLGHKIVFICMAKGKPRPHIT--WFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQ 81
+ C + W K+GVEL A + + I+
Sbjct: 16 DSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTAT----------RKNASNMEYRINKPRA 65
Query: 82 MDAGIYECYADNMYNVDTRT 101
D+G Y C +
Sbjct: 66 EDSGEYHCVYHFVSAPKANA 85
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 56.1 bits (136), Expect = 5e-12
Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 8/70 (11%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELY--AHMYVNLHEWHYGTDRIKSKIEIDPATQMD 83
G F GKP P W+K+GV++ +Y E + + I T D
Sbjct: 20 GSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE------LVIRDVTGED 73
Query: 84 AGIYECYADN 93
+ A N
Sbjct: 74 SASIMVKAIN 83
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 58.3 bits (141), Expect = 6e-12
Identities = 13/72 (18%), Positives = 19/72 (26%), Gaps = 14/72 (19%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSK----IEIDPATQ 81
G V +C P I W G ++ R ++I +
Sbjct: 115 GEDAVIVCDVVSSLPPTIIWKHKGRDVILK----------KDVRFIVLSNNYLQIRGIKK 164
Query: 82 MDAGIYECYADN 93
D G Y C
Sbjct: 165 TDEGTYRCEGRI 176
Score = 56.4 bits (136), Expect = 3e-11
Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 5/74 (6%)
Query: 24 VLGHKIVFICMAKGKPR-PHITWFK-DGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQ 81
+G F+C G + I+WF +G +L + D S + I A
Sbjct: 15 SVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPN---QQRISVVWNDDDSSTLTIYNANI 71
Query: 82 MDAGIYECYADNMY 95
DAGIY+C
Sbjct: 72 DDAGIYKCVVTAED 85
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 58.9 bits (142), Expect = 1e-11
Identities = 12/77 (15%), Positives = 22/77 (28%), Gaps = 2/77 (2%)
Query: 26 GHKIVFICMA-KGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIK-SKIEIDPATQMD 83
G + C A +TW + L Y + + I+ + + D
Sbjct: 242 GEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARND 301
Query: 84 AGIYECYADNMYNVDTR 100
G Y C + +
Sbjct: 302 TGYYTCSSSKHPSQSAL 318
Score = 56.6 bits (136), Expect = 6e-11
Identities = 17/103 (16%), Positives = 27/103 (26%), Gaps = 9/103 (8%)
Query: 4 EDSSLSLKRSCQQVKYFPLSV---LGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNL 60
ED +L+ Y +V + I + W L N
Sbjct: 38 EDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSL------NC 91
Query: 61 HEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFK 103
+R + I T+ AG Y + + T F
Sbjct: 92 QPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFT 134
Score = 56.6 bits (136), Expect = 7e-11
Identities = 13/78 (16%), Positives = 20/78 (25%), Gaps = 9/78 (11%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
+ F K P+ TW E + I + G
Sbjct: 341 YEEFCFSVRFKAYPQIRCTWTFSRKSF-------PCEQKGLDNG--YSISKFCNHKHQPG 391
Query: 86 IYECYADNMYNVDTRTFK 103
Y +A+N T+ F
Sbjct: 392 EYIFHAENDDAQFTKMFT 409
Score = 45.0 bits (106), Expect = 7e-07
Identities = 10/83 (12%), Positives = 23/83 (27%), Gaps = 9/83 (10%)
Query: 22 LSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQ 81
+ ++ +C+++ P P + W + + K + +
Sbjct: 150 FRKMENQDALVCISESVPEPIVEWVLCDSQGE------SCKEESPAVVKKEEKVLHELFG 203
Query: 82 MDAGIYECYADNMYNVDTRTFKT 104
D C A N + T
Sbjct: 204 TD---IRCCARNELGRECTRLFT 223
Score = 25.0 bits (54), Expect = 6.4
Identities = 1/31 (3%), Positives = 12/31 (38%)
Query: 70 IKSKIEIDPATQMDAGIYECYADNMYNVDTR 100
+ + + ++ + Y +++ ++
Sbjct: 13 VLINHKNNDSSVGKSSSYPMVSESPEDLGCA 43
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 55.0 bits (133), Expect = 2e-11
Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 5/68 (7%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G FI + KP + W+ +GVEL + HY +EI D+G
Sbjct: 23 GQNTRFILNVQSKPTAEVKWYHNGVELQESSKI-----HYTNTSGVLTLEILDCHTDDSG 77
Query: 86 IYECYADN 93
Y N
Sbjct: 78 TYRAVCTN 85
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 55.7 bits (134), Expect = 2e-11
Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 3/84 (3%)
Query: 23 SVLGHKIVFICMAKGKPRP-HITWFKDGVELYAHMYVNLH-EWHYGTDRIKSKIEIDPAT 80
++ G K C + P P I W L + E + + S + I
Sbjct: 25 ALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIV 84
Query: 81 QMD-AGIYECYADNMYNVDTRTFK 103
+ D IY C A N + DT +
Sbjct: 85 RADFQTIYNCTAWNSFGSDTEIIR 108
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 57.8 bits (139), Expect = 2e-11
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 24 VLGHKIVFICMAK-GKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQM 82
+ C++ G+P ITW D + V GT + S + P++Q+
Sbjct: 130 TGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFL--SGTVTVTSLWILVPSSQV 187
Query: 83 DAGIYECYADNM 94
D C ++
Sbjct: 188 DGKNVTCKVEHE 199
Score = 50.9 bits (121), Expect = 5e-09
Identities = 10/69 (14%), Positives = 17/69 (24%), Gaps = 12/69 (17%)
Query: 26 GHKIVFICMAKGKPRPH-ITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
++ C A+ P P W L +++ I P +
Sbjct: 232 QNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQ-----------GAQLLIRPVDKPIN 280
Query: 85 GIYECYADN 93
C N
Sbjct: 281 TTLICNVTN 289
Score = 39.3 bits (91), Expect = 7e-05
Identities = 12/89 (13%), Positives = 24/89 (26%), Gaps = 18/89 (20%)
Query: 24 VLGHKIVFICMAKGKPRP-----HITWFKDGVELYAHMYVNLHEWHY-GTDRIK------ 71
LG + C + +TW + G ++ Y + R++
Sbjct: 13 FLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARL 72
Query: 72 ------SKIEIDPATQMDAGIYECYADNM 94
+ + + D G Y C
Sbjct: 73 GAELRNASLRMFGLRVEDEGNYTCLFVTF 101
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 56.9 bits (137), Expect = 4e-11
Identities = 13/79 (16%), Positives = 23/79 (29%), Gaps = 4/79 (5%)
Query: 24 VLGHKIVFICMAKGKPRPHI-TWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQM 82
+ G +C A + +L + H Y + +D
Sbjct: 199 IRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKV---LTLNLDQVDFQ 255
Query: 83 DAGIYECYADNMYNVDTRT 101
AG Y C A N+ + +
Sbjct: 256 HAGNYSCVASNVQGKHSTS 274
Score = 40.3 bits (94), Expect = 3e-05
Identities = 11/70 (15%), Positives = 20/70 (28%), Gaps = 10/70 (14%)
Query: 26 GHKIVFICMAKG-KPRPHITWFK-DGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMD 83
+ C+ ++ + G L H + WH I A +
Sbjct: 104 DQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHG--------FTIHRAKFIQ 155
Query: 84 AGIYECYADN 93
+ Y+C A
Sbjct: 156 SQDYQCSALM 165
Score = 35.3 bits (81), Expect = 0.001
Identities = 12/76 (15%), Positives = 20/76 (26%), Gaps = 14/76 (18%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G + C+ G + W W +D S + + AT + G
Sbjct: 19 GATVTLRCVGNGS----VEWDGPPSP----------HWTLYSDGSSSILSTNNATFQNTG 64
Query: 86 IYECYADNMYNVDTRT 101
Y C +
Sbjct: 65 TYRCTEPGDPLGGSAA 80
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 56.1 bits (135), Expect = 4e-11
Identities = 16/77 (20%), Positives = 25/77 (32%), Gaps = 5/77 (6%)
Query: 24 VLGHKIVFICMAKGK-PRPHITWFKDGVEL----YAHMYVNLHEWHYGTDRIKSKIEIDP 78
G C + + P + W +DG L V L E + S++ I
Sbjct: 15 ARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITS 74
Query: 79 ATQMDAGIYECYADNMY 95
D G Y+C +
Sbjct: 75 LQLSDTGQYQCLVFLGH 91
Score = 50.3 bits (120), Expect = 6e-09
Identities = 13/72 (18%), Positives = 19/72 (26%), Gaps = 15/72 (20%)
Query: 24 VLGHKIVFICMAKGKPRP-HITWFKDGVELYAHMYVNLHEWHYGTDRIK-SKIEIDPATQ 81
C A+G P P + W +D V L H + +
Sbjct: 119 AANTPFNLSCQAQGPPEPVDLLWLQDAVPL------ATAPGHGPQRSLHVPGLN------ 166
Query: 82 MDAGIYECYADN 93
+ C A N
Sbjct: 167 -KTSSFSCEAHN 177
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 102
Score = 54.0 bits (130), Expect = 4e-11
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 6/68 (8%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G C + + +TW+KDG +L + V + ++ + A Q +AG
Sbjct: 26 GASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEA-----VGCTRRLVVQQAGQAEAG 79
Query: 86 IYECYADN 93
Y C A
Sbjct: 80 EYSCEAGG 87
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 57.0 bits (137), Expect = 5e-11
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 6/66 (9%)
Query: 31 FICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECY 90
+ K I W+KD + L + + + R + + + DAG Y C
Sbjct: 145 LSEFTRDKTDVKIQWYKDSLLL------DKDNEKFLSVRGTTHLLVHDVALEDAGYYRCV 198
Query: 91 ADNMYN 96
+
Sbjct: 199 LTFAHE 204
Score = 50.5 bits (120), Expect = 8e-09
Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Query: 21 PLSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPAT 80
P+++ ++ + A PR ++TW K+ V E + + + PA
Sbjct: 35 PVALRCPQVPYWLWASVSPRINLTWHKNDSAR----TVPGEEETRMWAQ-DGALWLLPAL 89
Query: 81 QMDAGIYECYADNMYNVDTRTFK 103
Q D+G Y C N D + +
Sbjct: 90 QEDSGTYVCTTRNASYCDKMSIE 112
Score = 44.3 bits (104), Expect = 1e-06
Identities = 13/82 (15%), Positives = 22/82 (26%), Gaps = 12/82 (14%)
Query: 24 VLGHKIVFICMA---KGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSK------- 73
LG ++ C G P + W+ Y
Sbjct: 239 SLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEV 298
Query: 74 -IEIDPATQMDAGI-YECYADN 93
+ DP T+ D + ++C N
Sbjct: 299 PLIFDPVTREDLHMDFKCVVHN 320
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 56.7 bits (136), Expect = 5e-11
Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 3/80 (3%)
Query: 26 GHKIVFICMAKGKPRP-HITWFKDGVELYAHMYVNLHEWHYGTDRIK--SKIEIDPATQM 82
G +C K + W K + V + WH G + + I A
Sbjct: 203 GDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVD 262
Query: 83 DAGIYECYADNMYNVDTRTF 102
D+G++ CYA+N + T
Sbjct: 263 DSGVFMCYANNTFGSANVTT 282
Score = 42.0 bits (98), Expect = 8e-06
Identities = 7/69 (10%), Positives = 13/69 (18%), Gaps = 8/69 (11%)
Query: 26 GHKIVFICMAKGKPRPHITWFK-DGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
+ C + + DG L + + I +
Sbjct: 106 DSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPK--AGITI-----KNVKRAYHR 158
Query: 85 GIYECYADN 93
C A
Sbjct: 159 LCVRCAAQR 167
Score = 32.0 bits (72), Expect = 0.024
Identities = 9/68 (13%), Positives = 18/68 (26%), Gaps = 16/68 (23%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G + C+ + W ++ + K++ + A G
Sbjct: 27 GDTLSLTCIDPDF----VRWTFKT------------YFNEMVENKKNEWIQEKAEATRTG 70
Query: 86 IYECYADN 93
Y C N
Sbjct: 71 TYTCSNSN 78
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 54.2 bits (130), Expect = 6e-11
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
Query: 26 GHKIVFICMAKGKP---RPHITWFKDGVELYAHM---YVNLHEWHYGTDRIKS-KIEIDP 78
G I FI K + +P I WFK A ++ L E R+ + +++I
Sbjct: 22 GEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIK 81
Query: 79 ATQMDAGIYECYADNMYNVDTRTFK 103
A AG Y C D+ +F
Sbjct: 82 AKDNFAGNYRCEVTYKDKFDSCSFD 106
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 54.4 bits (130), Expect = 7e-11
Identities = 16/104 (15%), Positives = 27/104 (25%), Gaps = 24/104 (23%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHY-----------------G 66
V G+K+ G P P + W K + +
Sbjct: 31 VAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCET 90
Query: 67 TDRIK-------SKIEIDPATQMDAGIYECYADNMYNVDTRTFK 103
R++ S ++ A + D G+Y N D
Sbjct: 91 EGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLT 134
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 55.7 bits (134), Expect = 7e-11
Identities = 8/76 (10%), Positives = 24/76 (31%), Gaps = 3/76 (3%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G ++ K + + + E++ ++ H + ++ ++ D G
Sbjct: 18 GQVRFWMQAEKLSGNAKVNYIFNEKEIFEG---PKYKMHIDRNTGIIEMFMEKLQDEDEG 74
Query: 86 IYECYADNMYNVDTRT 101
Y + + T
Sbjct: 75 TYTFQLQDGKATNHST 90
Score = 53.8 bits (129), Expect = 3e-10
Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 8/79 (10%)
Query: 26 GHKIVFICMAKG-KPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
++ C K HI W+KD E+ + + + I ++ DA
Sbjct: 131 ECNVLLKCKVANIKKETHIVWYKDEREISV-------DEKHDFKDGICTLLITEFSKKDA 183
Query: 85 GIYECYADNMYNVDTRTFK 103
GIYE + D K
Sbjct: 184 GIYEVILKDDRGKDKSRLK 202
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 55.9 bits (134), Expect = 1e-10
Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 8/88 (9%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVEL-------YAHMYVNLHEWHYGTDRIKSKIEI 76
LG +I IC G+ W +G + Y + + + + + I
Sbjct: 222 DLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNI 281
Query: 77 DPATQMD-AGIYECYADNMYNVDTRTFK 103
+ C+A N + +D +
Sbjct: 282 SEIESRFYKHPFTCFAKNTHGIDAAYIQ 309
Score = 50.1 bits (119), Expect = 1e-08
Identities = 13/101 (12%), Positives = 26/101 (25%), Gaps = 14/101 (13%)
Query: 15 QQVKYFPLSVLGHKIVFIC------MAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTD 68
Q + + +C + P + W+KD L +
Sbjct: 107 AQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLD--------NIHFS 158
Query: 69 RIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFSIT 109
+K ++ + + G Y C+A Y
Sbjct: 159 GVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFI 199
Score = 46.3 bits (109), Expect = 3e-07
Identities = 16/81 (19%), Positives = 24/81 (29%), Gaps = 10/81 (12%)
Query: 30 VFICMAKGKP-RPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYE 88
V C + ITW+KD + + K+ PA D+G Y
Sbjct: 24 VRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHK-----EKLWFVPAKVEDSGHYY 78
Query: 89 CYADNMYNVDTRTFKTDFSIT 109
C N + + S
Sbjct: 79 CVVRN----SSYCLRIKISAK 95
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 52.9 bits (127), Expect = 1e-10
Identities = 20/77 (25%), Positives = 27/77 (35%), Gaps = 11/77 (14%)
Query: 26 GHKIVFICMAK-GKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
G + FIC AK P + W + L + I + I DA
Sbjct: 25 GADVTFICTAKSKSPAYTLVWTRLHNGK-------LPSRAMDFNGI---LTIRNVQPSDA 74
Query: 85 GIYECYADNMYNVDTRT 101
G Y C NM+ +D T
Sbjct: 75 GTYVCTGSNMFAMDQGT 91
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 55.3 bits (133), Expect = 1e-10
Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 4/78 (5%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDG-VELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
G +C A K G +L + + + +Y R + ++ DA
Sbjct: 201 GEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRA---LSLNAVDFQDA 257
Query: 85 GIYECYADNMYNVDTRTF 102
GIY C A N T T
Sbjct: 258 GIYSCVASNDVGTRTATM 275
Score = 44.2 bits (104), Expect = 1e-06
Identities = 11/73 (15%), Positives = 21/73 (28%), Gaps = 10/73 (13%)
Query: 24 VLGHKIVFICMAKGK-PRPHITWFKDGVE-LYAHMYVNLHEWHYGTDRIKSKIEIDPATQ 81
V G + V C+ + ++ ++G + W I A
Sbjct: 102 VEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRG--------FIIRKAKV 153
Query: 82 MDAGIYECYADNM 94
+D+ Y C
Sbjct: 154 LDSNTYVCKTMVN 166
Score = 41.9 bits (98), Expect = 9e-06
Identities = 12/77 (15%), Positives = 20/77 (25%), Gaps = 14/77 (18%)
Query: 25 LGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
G + C++ G + W W + S + AT +
Sbjct: 18 PGETVTLRCVSNG----SVEWDGPISPY----------WTLDPESPGSTLTTRNATFKNT 63
Query: 85 GIYECYADNMYNVDTRT 101
G Y C + T
Sbjct: 64 GTYRCTELEDPMAGSTT 80
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 52.8 bits (127), Expect = 1e-10
Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 6/68 (8%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
++V C + TW+KDG ++ + + D K ++ + A D+G
Sbjct: 25 SERVVLTCEL-SRVDFPATWYKDGQKVEESELLVVKM-----DGRKHRLILPEAKVQDSG 78
Query: 86 IYECYADN 93
+EC +
Sbjct: 79 EFECRTEG 86
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 52.7 bits (127), Expect = 2e-10
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 6/68 (8%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G + C P + W KD + ++ + + + I A+ DAG
Sbjct: 23 GEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVC-----EGTMAMLVIRGASLKDAG 76
Query: 86 IYECYADN 93
Y C +
Sbjct: 77 EYTCEVEA 84
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 52.8 bits (127), Expect = 2e-10
Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 4/68 (5%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G F C + WF D L+A+ + + G + + D+G
Sbjct: 28 GSSATFRCRISPANYEPVHWFLDKTPLHANELNEI-DAQPGGYH---VLTLRQLALKDSG 83
Query: 86 IYECYADN 93
A +
Sbjct: 84 TIYFEAGD 91
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 52.1 bits (125), Expect = 3e-10
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 6/68 (8%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
++V C +P + W KDG E+ + L + + ++ + D+G
Sbjct: 28 LERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQK-----EDTVRRLVLPAVQLEDSG 81
Query: 86 IYECYADN 93
Y C D+
Sbjct: 82 EYLCEIDD 89
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 52.0 bits (125), Expect = 3e-10
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 2/68 (2%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G ++ + + W K+GVEL + + D + + Q D G
Sbjct: 23 GDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKAR-YRFKKDGKRHILIFSDVVQEDRG 80
Query: 86 IYECYADN 93
Y+ +
Sbjct: 81 RYQVITNG 88
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 55.0 bits (132), Expect = 3e-10
Identities = 12/77 (15%), Positives = 23/77 (29%), Gaps = 16/77 (20%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G + C + P P +W +G+ + + I T + G
Sbjct: 574 GANLNLSCHSASNPSPQYSWRINGIPQ-----------QHT-----QVLFIAKITPNNNG 617
Query: 86 IYECYADNMYNVDTRTF 102
Y C+ N+ +
Sbjct: 618 TYACFVSNLATGRNNSI 634
Score = 54.2 bits (130), Expect = 5e-10
Identities = 16/76 (21%), Positives = 24/76 (31%), Gaps = 16/76 (21%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G + C A P +WF +G + ++ I T ++G
Sbjct: 218 GENLNLSCHAASNPPAQYSWFVNGTFQQST----------------QELFIPNITVNNSG 261
Query: 86 IYECYADNMYNVDTRT 101
Y C A N RT
Sbjct: 262 SYTCQAHNSDTGLNRT 277
Score = 53.4 bits (128), Expect = 8e-10
Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 16/68 (23%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G + C A P +W DG ++ I T+ ++G
Sbjct: 396 GVNLSLSCHAASNPPAQYSWLIDGNIQQHT----------------QELFISNITEKNSG 439
Query: 86 IYECYADN 93
+Y C A+N
Sbjct: 440 LYTCQANN 447
Score = 50.7 bits (121), Expect = 7e-09
Identities = 11/68 (16%), Positives = 19/68 (27%), Gaps = 8/68 (11%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
+ F C + + W+ +G L + + T+ DA
Sbjct: 482 KDAVAFTCEPEAQNTT-YLWWVNGQSL-------PVSPRLQLSNGNRTLTLFNVTRNDAR 533
Query: 86 IYECYADN 93
Y C N
Sbjct: 534 AYVCGIQN 541
Score = 50.3 bits (120), Expect = 1e-08
Identities = 10/68 (14%), Positives = 20/68 (29%), Gaps = 8/68 (11%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
+ F C + + W+ + L + L + + T+ D
Sbjct: 126 KDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQLSNG-------NRTLTLFNVTRNDTA 177
Query: 86 IYECYADN 93
Y+C N
Sbjct: 178 SYKCETQN 185
Score = 49.2 bits (117), Expect = 3e-08
Identities = 11/92 (11%), Positives = 24/92 (26%), Gaps = 12/92 (13%)
Query: 21 PLSVL-GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSK------ 73
P +V G +++ + + +W+K + +
Sbjct: 8 PFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREII 67
Query: 74 -----IEIDPATQMDAGIYECYADNMYNVDTR 100
+ I Q D G Y + V+
Sbjct: 68 YPNASLLIQNIIQNDTGFYTLHVIKSDLVNEE 99
Score = 46.1 bits (109), Expect = 3e-07
Identities = 11/69 (15%), Positives = 20/69 (28%), Gaps = 8/69 (11%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
+ C + + W+ + L + L + + T+ D G
Sbjct: 304 EDAVALTCEPEIQN-TTYLWWVNNQSLPVSPRLQLSN-------DNRTLTLLSVTRNDVG 355
Query: 86 IYECYADNM 94
YEC N
Sbjct: 356 PYECGIQNE 364
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 54.2 bits (130), Expect = 4e-10
Identities = 7/68 (10%), Positives = 22/68 (32%), Gaps = 3/68 (4%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G ++ K + + + E++ ++ H + ++ ++ D G
Sbjct: 123 GQVRFWMQAEKLSGNAKVNYIFNEKEIFEG---PKYKMHIDRNTGIIEMFMEKLQDEDEG 179
Query: 86 IYECYADN 93
Y +
Sbjct: 180 TYTFQLQD 187
Score = 51.9 bits (124), Expect = 3e-09
Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 6/68 (8%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
+ F C P+ +W KD V + + + K+K+ D G
Sbjct: 18 VISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVE-----SKGNKTKMTFKDLGMDDLG 71
Query: 86 IYECYADN 93
IY C +
Sbjct: 72 IYSCDVTD 79
Score = 51.5 bits (123), Expect = 3e-09
Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 8/79 (10%)
Query: 26 GHKIVFICMAKG-KPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
++ C K HI W+KD E+ + + I ++ DA
Sbjct: 236 ECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF-------KDGICTLLITEFSKKDA 288
Query: 85 GIYECYADNMYNVDTRTFK 103
GIYE + D K
Sbjct: 289 GIYEVILKDDRGKDKSRLK 307
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo
sapiens}
Length = 97
Score = 51.6 bits (124), Expect = 4e-10
Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 16/76 (21%)
Query: 26 GHKIVFICMAKGKPRP-HITWFKDGVELYAHMYVNLHEWHYGTDRIKSK-----IEIDPA 79
G + ++C + + +TW+ +L Y I + + +
Sbjct: 16 GGHVKYVCKIENYDQSTQVTWYFGVRQLEN-------SEKY---EITYEDGVAILYVKDI 65
Query: 80 TQMDAGIYECYADNMY 95
T++D G Y C N Y
Sbjct: 66 TKLDDGTYRCKVVNDY 81
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 53.9 bits (129), Expect = 5e-10
Identities = 16/77 (20%), Positives = 21/77 (27%), Gaps = 18/77 (23%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
+ +C A G P P + KDG E T+ G
Sbjct: 200 NSQQTPMCQAWGNPLPELKCLKDG------------------TFPLPIGESVTVTRDLEG 241
Query: 86 IYECYADNMYNVDTRTF 102
Y C A + TR
Sbjct: 242 TYLCRARSTQGEVTREV 258
Score = 31.6 bits (71), Expect = 0.038
Identities = 10/80 (12%), Positives = 21/80 (26%), Gaps = 18/80 (22%)
Query: 16 QVKYFPLSVL-GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKI 74
V V G ++ C A P +GV ++++
Sbjct: 102 NVILTKPEVSEGTEVTVKCEA----HPRAKVTLNGVPA-------------QPLGPRAQL 144
Query: 75 EIDPATQMDAGIYECYADNM 94
+ + + + C A
Sbjct: 145 LLKATPEDNGRSFSCSATLE 164
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 50.8 bits (122), Expect = 8e-10
Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 6/68 (8%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
+ VF C + W+K+GVE+ + + K+ ID D G
Sbjct: 23 AEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISH-----VGRFHKLVIDDVRPEDEG 76
Query: 86 IYECYADN 93
Y D
Sbjct: 77 DYTFVPDG 84
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 53.6 bits (129), Expect = 8e-10
Identities = 22/81 (27%), Positives = 28/81 (34%), Gaps = 7/81 (8%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHY-GTDRIKSKIEIDPATQM 82
GH + F+C A G P P I W L + GT +E+ A
Sbjct: 398 DEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGT------LEVRYAQVQ 451
Query: 83 DAGIYECYADNMYNVDTRTFK 103
D G Y C A N D+
Sbjct: 452 DNGTYLCIAANAGGNDSMPAH 472
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 53.3 bits (127), Expect = 9e-10
Identities = 16/85 (18%), Positives = 26/85 (30%), Gaps = 10/85 (11%)
Query: 20 FPLSVL-GHKIVFIC-MAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEID 77
+ L + I C + K +ITW+K+ EL + + I
Sbjct: 136 YELGTHDKYGIDLYCGILYAKHYNNITWYKNNQEL--------IIDGTKYSQSGQNLIIH 187
Query: 78 PATQMDAGIYECYADNMYNVDTRTF 102
D+G Y+CY
Sbjct: 188 NPELEDSGRYDCYVHYDDVRIKNDI 212
Score = 51.4 bits (122), Expect = 4e-09
Identities = 13/83 (15%), Positives = 21/83 (25%), Gaps = 5/83 (6%)
Query: 24 VLGHKIVFICMAKGKPRP----HITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPA 79
+G C A I W + + ++ + +
Sbjct: 241 TIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENV 300
Query: 80 TQMDAG-IYECYADNMYNVDTRT 101
T+ G Y C N Y T T
Sbjct: 301 TEEYIGNTYTCRGHNYYFDKTLT 323
Score = 33.3 bits (75), Expect = 0.009
Identities = 18/114 (15%), Positives = 25/114 (21%), Gaps = 24/114 (21%)
Query: 1 MPTEDSSLSLKRSCQQVKYFPLSVL-GHKIVFICMA---------KGKPRPHITWFKDG- 49
+P +DS L SC G C + W K G
Sbjct: 19 LPAKDSKW-LNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGK 77
Query: 50 VELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG-IYECYADNMYNVDTRTF 102
+ V G + I T D+ Y C +
Sbjct: 78 TRRPLNRRV-----KNGD------LWIANYTSNDSHRRYLCTVTTKNGDCVQGI 120
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 50.4 bits (120), Expect = 1e-09
Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 7/84 (8%)
Query: 26 GHKIVFICMAKGKP---RPHITWFKDGVELYAH---MYVNLHEWHYGTDRI-KSKIEIDP 78
G I F G P + WFK + ++ LH+ + ++ ++ I
Sbjct: 19 GGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITD 78
Query: 79 ATQMDAGIYECYADNMYNVDTRTF 102
A G Y C D F
Sbjct: 79 AQPAFTGSYRCEVSTKDKFDCSNF 102
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 50.1 bits (120), Expect = 2e-09
Identities = 10/69 (14%), Positives = 16/69 (23%), Gaps = 6/69 (8%)
Query: 26 GHKIVFIC-MAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
G F C ++ W G + + K + + A DA
Sbjct: 23 GESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATR-----QGRKYILVVREAAPSDA 77
Query: 85 GIYECYADN 93
G
Sbjct: 78 GEVVFSVRG 86
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 49.3 bits (118), Expect = 2e-09
Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 6/68 (8%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G ++ F+ P+ + W+K+G E+ + + I+ D
Sbjct: 23 GGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEH-----KGCQRILFINNCQMTDDS 76
Query: 86 IYECYADN 93
Y A +
Sbjct: 77 EYYVTAGD 84
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 49.2 bits (118), Expect = 3e-09
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMD 83
G ++ C + ++ WFK+G E+ + + K + I+ AT+ D
Sbjct: 20 YCGERVELECEV-SEDDANVKWFKNGEEIIPG---PKSRYRIRVEGKKHILIIEGATKAD 75
Query: 84 AGIYECYADN 93
A Y
Sbjct: 76 AAEYSVMTTG 85
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 50.9 bits (121), Expect = 3e-09
Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 5/83 (6%)
Query: 24 VLGHKIVFICMAKGKP--RPHITWFKDGVELYAHMYVNLHEWHYGTDRIK---SKIEIDP 78
+G K+V C A+ + W + VN +K S + ID
Sbjct: 118 SVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDG 177
Query: 79 ATQMDAGIYECYADNMYNVDTRT 101
T+ D G+Y C A + +
Sbjct: 178 VTRSDQGLYTCAASSGLMTKKNS 200
Score = 28.6 bits (63), Expect = 0.39
Identities = 11/68 (16%), Positives = 17/68 (25%), Gaps = 6/68 (8%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
+V C+ +++ E N W K I AG
Sbjct: 24 NKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWD-----SKKGFTIPSYMISYAG 77
Query: 86 IYECYADN 93
+ C A
Sbjct: 78 MVFCEAKI 85
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 51.7 bits (123), Expect = 3e-09
Identities = 15/89 (16%), Positives = 22/89 (24%), Gaps = 21/89 (23%)
Query: 16 QVKYFPLSVL----------GHKIVFICMAKGKPRPH-ITWFKDGVELYAHMYVNLHEWH 64
V+Y P + + C A P W L +
Sbjct: 227 NVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEA------ 280
Query: 65 YGTDRIKSKIEIDPATQMDAGIYECYADN 93
+ ++ P AG Y C A N
Sbjct: 281 ----QNRTLFFKGPINYSLAGTYICEATN 305
Score = 47.4 bits (112), Expect = 1e-07
Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 4/79 (5%)
Query: 26 GHKIVFICM-AKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
+V C A GKP ++W + + GT + S+ + P+ +
Sbjct: 150 DKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPN---GTVTVISRYRLVPSREAHQ 206
Query: 85 GIYECYADNMYNVDTRTFK 103
C + + +
Sbjct: 207 QSLACIVNYHMDRFKESLT 225
Score = 35.5 bits (81), Expect = 0.002
Identities = 13/87 (14%), Positives = 20/87 (22%), Gaps = 17/87 (19%)
Query: 24 VLGHKIVFICMAKGKPRP----HITWFKD--GVELYAHMYVNLHEWHY-----------G 66
+G +V C +TW K G + +Y
Sbjct: 27 FIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLR 86
Query: 67 TDRIKSKIEIDPATQMDAGIYECYADN 93
I + D G+Y C
Sbjct: 87 PSFTDGTIRLSRLELEDEGVYICEFAT 113
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 48.9 bits (117), Expect = 3e-09
Identities = 14/70 (20%), Positives = 21/70 (30%), Gaps = 7/70 (10%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMD 83
LG +I C W K+G+ + + + K+ I A D
Sbjct: 20 NLGKEICLKCEISENIPG--KWTKNGLPVQESDRLKVV-----QKGRIHKLVIANALTED 72
Query: 84 AGIYECYADN 93
G Y D
Sbjct: 73 EGDYVFAPDA 82
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 48.8 bits (117), Expect = 3e-09
Identities = 14/68 (20%), Positives = 18/68 (26%), Gaps = 6/68 (8%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G F +P H W G L A + E D K + + G
Sbjct: 20 GETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIE-----DGKKHILILHNCQLGMTG 73
Query: 86 IYECYADN 93
A N
Sbjct: 74 EVSFQAAN 81
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding,
cell adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 48.9 bits (117), Expect = 4e-09
Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 6/68 (8%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G VF + + W + G ++ A L + + + + D G
Sbjct: 23 GSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLAT-----EGTRHTLTVREVGPADQG 76
Query: 86 IYECYADN 93
Y A +
Sbjct: 77 SYAVIAGS 84
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 48.9 bits (117), Expect = 4e-09
Identities = 10/68 (14%), Positives = 20/68 (29%), Gaps = 6/68 (8%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G C+ P + W L +L + + ++ + D+G
Sbjct: 23 GGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQ-----EGAMLELVVRNLRPQDSG 76
Query: 86 IYECYADN 93
Y C +
Sbjct: 77 RYSCSFGD 84
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 49.0 bits (116), Expect = 7e-09
Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 5/84 (5%)
Query: 24 VLGHKIVFICMAKGKPRP--HITWFKDGVELYAHMYVN-LHEWHYGTDRIK--SKIEIDP 78
+G K+V C A+ + W + VN + G++ K S + ID
Sbjct: 21 SVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDG 80
Query: 79 ATQMDAGIYECYADNMYNVDTRTF 102
T+ D G+Y C A + +
Sbjct: 81 VTRSDQGLYTCAASSGLMTKKNST 104
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 50.1 bits (119), Expect = 7e-09
Identities = 12/70 (17%), Positives = 19/70 (27%), Gaps = 8/70 (11%)
Query: 25 LGHKIVFICMAK-GKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMD 83
+G+ C K G W K + + I + A+
Sbjct: 135 IGNDFKLKCEPKEGSLPLQFEWQKLSDSQ-------TMPTPWLAEMTSPVISVKNASSEY 187
Query: 84 AGIYECYADN 93
+G Y C N
Sbjct: 188 SGTYSCTVQN 197
Score = 38.5 bits (89), Expect = 1e-04
Identities = 15/103 (14%), Positives = 25/103 (24%), Gaps = 23/103 (22%)
Query: 24 VLGHKIVFICMAKGKPRP----HITWFKDGVE---------LYAHMYVNLHEWHYGTDRI 70
G C P I W + LY+ + + + R+
Sbjct: 13 AKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRV 72
Query: 71 ----------KSKIEIDPATQMDAGIYECYADNMYNVDTRTFK 103
+ I + D G Y+C V + F
Sbjct: 73 HFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFL 115
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 50.0 bits (119), Expect = 8e-09
Identities = 10/70 (14%), Positives = 18/70 (25%), Gaps = 5/70 (7%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVN--LHEWHYGTDRIKSKIEIDPATQMD 83
+ C P PH+ W A N + + G+ + + +
Sbjct: 119 FSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKP---W 175
Query: 84 AGIYECYADN 93
C N
Sbjct: 176 HLPVTCVGKN 185
Score = 40.4 bits (94), Expect = 2e-05
Identities = 15/85 (17%), Positives = 24/85 (28%), Gaps = 15/85 (17%)
Query: 24 VLGHKIVFICMAK---GKPRPHITWFKDG------VELYAHMYVNLHEWHYGT------D 68
LG ++ + P ++WFK G + H V EW +
Sbjct: 4 FLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRS 63
Query: 69 RIKSKIEIDPATQMDAGIYECYADN 93
+ + A G Y C
Sbjct: 64 ANTFFLVVTAANISHDGNYLCRMKL 88
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 48.1 bits (115), Expect = 1e-08
Identities = 13/68 (19%), Positives = 21/68 (30%), Gaps = 7/68 (10%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G C + W K L +L + D + +++I + DAG
Sbjct: 23 GATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQ-----DGTRCELQIHDLSVADAG 75
Query: 86 IYECYADN 93
Y C
Sbjct: 76 EYSCMCGQ 83
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 49.5 bits (117), Expect = 1e-08
Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 9/84 (10%)
Query: 20 FPLSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPA 79
+ +S+ G ++ C P I W + + E + + +
Sbjct: 122 YKVSISGTTVILTCPQY--PGSEILWQHNDKNI------GGDEDDKNIGSDEDHLSLKEF 173
Query: 80 TQM-DAGIYECYADNMYNVDTRTF 102
+++ +G Y CY D +
Sbjct: 174 SELEQSGYYVCYPRGSKPEDANFY 197
Score = 46.0 bits (108), Expect = 2e-07
Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 15/77 (19%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
++ C +ITWFKDG + K K + + G
Sbjct: 18 DGSVLLTC---DAEAKNITWFKDGKMIGF------------LTEDKKKWNLGSNAKDPRG 62
Query: 86 IYECYADNMYNVDTRTF 102
+Y+C + + +
Sbjct: 63 MYQCKGSQNKSKPLQVY 79
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 47.7 bits (114), Expect = 2e-08
Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 7/68 (10%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G V C + W+K L +L + D + +++I DAG
Sbjct: 34 GATAVLRCELSKMAP--VEWWKGHETLRDGDRHSLRQ-----DGARCELQIRGLVAEDAG 86
Query: 86 IYECYADN 93
Y C
Sbjct: 87 EYLCMCGK 94
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 49.9 bits (118), Expect = 2e-08
Identities = 16/77 (20%), Positives = 21/77 (27%), Gaps = 18/77 (23%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
+ +C A G P P + KDG E T+ G
Sbjct: 385 NSQQTPMCQAWGNPLPELKCLKDGTFPLPIG------------------ESVTVTRDLEG 426
Query: 86 IYECYADNMYNVDTRTF 102
Y C A + TR
Sbjct: 427 TYLCRARSTQGEVTREV 443
Score = 39.9 bits (92), Expect = 4e-05
Identities = 7/86 (8%), Positives = 22/86 (25%), Gaps = 26/86 (30%)
Query: 17 VKYFPLSVL---------GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGT 67
+ FP + G ++ C A + + +
Sbjct: 280 IYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGP-------------- 325
Query: 68 DRIKSKIEIDPATQMDAGIYECYADN 93
++++ + + + + C A
Sbjct: 326 ---RAQLLLKATPEDNGRSFSCSATL 348
Score = 37.5 bits (86), Expect = 3e-04
Identities = 9/74 (12%), Positives = 19/74 (25%), Gaps = 11/74 (14%)
Query: 26 GHKIVFICMAKG-KPRPHIT--WFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQM 82
G + C +G PR ++T + EL + + +
Sbjct: 101 GKNLTLRCQVEGGAPRANLTVVLLRGEKELKRE--------PAVGEPAEVTTTVLVRRDH 152
Query: 83 DAGIYECYADNMYN 96
+ C +
Sbjct: 153 HGANFSCRTELDLR 166
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 47.4 bits (112), Expect = 2e-08
Identities = 13/81 (16%), Positives = 21/81 (25%), Gaps = 5/81 (6%)
Query: 24 VLGHKIVFICMAKGKPRP--HITWFKDGVELY---AHMYVNLHEWHYGTDRIKSKIEIDP 78
+ G + F C A W D L Y +L + + +
Sbjct: 23 IXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRN 82
Query: 79 ATQMDAGIYECYADNMYNVDT 99
G Y+C N +
Sbjct: 83 VEFTSEGXYQCVISNHFGSSY 103
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 48.8 bits (116), Expect = 2e-08
Identities = 5/68 (7%), Positives = 14/68 (20%), Gaps = 15/68 (22%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G + + P + + + + + D+G
Sbjct: 112 GQSLTLTLESPPGSSPSVQCRSPRGKNI---------------QGGKTLSVSQLELQDSG 156
Query: 86 IYECYADN 93
+ C
Sbjct: 157 TWTCTVLQ 164
Score = 45.0 bits (106), Expect = 4e-07
Identities = 14/84 (16%), Positives = 19/84 (22%), Gaps = 12/84 (14%)
Query: 22 LSVLGHKIVFICMAKGKPRPHITWFKDGVE--LYAHMYVNLHEWHYGTDRIKSKI----- 74
L G + C A K W L DR S+
Sbjct: 6 LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 65
Query: 75 -----EIDPATQMDAGIYECYADN 93
I D+ Y C ++
Sbjct: 66 GNFPLIIKNLKIEDSDTYICEVED 89
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 46.9 bits (112), Expect = 2e-08
Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 6/66 (9%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
VF C P +TW K +EL A + + + ++ I + D+
Sbjct: 23 KGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQ-----EGLTLRLTISALEKADSD 76
Query: 86 IYECYA 91
Y C
Sbjct: 77 TYTCDI 82
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 49.1 bits (116), Expect = 3e-08
Identities = 12/81 (14%), Positives = 20/81 (24%)
Query: 23 SVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQM 82
+ H + F + W+ + +N + K + P
Sbjct: 30 PLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLN 89
Query: 83 DAGIYECYADNMYNVDTRTFK 103
D G Y C N F
Sbjct: 90 DTGNYTCMLRNTTYCSKVAFP 110
Score = 48.7 bits (115), Expect = 3e-08
Identities = 9/64 (14%), Positives = 16/64 (25%), Gaps = 9/64 (14%)
Query: 33 CMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYAD 92
+P ITW+ ++ + + A + G Y C
Sbjct: 147 GYFPSSVKPTITWYMGCYKI---------QNFNNVIPEGMNLSFLIALISNNGNYTCVVT 197
Query: 93 NMYN 96
N
Sbjct: 198 YPEN 201
Score = 41.8 bits (97), Expect = 1e-05
Identities = 13/89 (14%), Positives = 27/89 (30%), Gaps = 10/89 (11%)
Query: 25 LGHKIVFICMA----KGKPRPHITWFKDG-----VELYAHMYVNLHEWHYGTDRIKSKIE 75
G +++ C R + W DG + + + ++ + +
Sbjct: 240 PGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILS 299
Query: 76 IDPATQMD-AGIYECYADNMYNVDTRTFK 103
I T D Y C+A + + K
Sbjct: 300 IKKVTSEDLKRSYVCHARSAKGEVAKAAK 328
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 48.6 bits (115), Expect = 3e-08
Identities = 5/76 (6%), Positives = 13/76 (17%), Gaps = 15/76 (19%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G + + P + + + + D+G
Sbjct: 111 GQSLTLTLESPPGSSPSVQCRSPRGKNIQG---------------GKTLSVSQLELQDSG 155
Query: 86 IYECYADNMYNVDTRT 101
+ C
Sbjct: 156 TWTCTVLQNQKKVEFK 171
Score = 45.6 bits (107), Expect = 5e-07
Identities = 13/81 (16%), Positives = 18/81 (22%), Gaps = 12/81 (14%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVE--LYAHMYVNLHEWHYGTDRIKSKI--------- 74
G + C A K W L DR S+
Sbjct: 9 GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 68
Query: 75 -EIDPATQMDAGIYECYADNM 94
I D+ Y C ++
Sbjct: 69 LIIKNLKIEDSDTYICEVEDQ 89
Score = 35.9 bits (82), Expect = 0.001
Identities = 7/74 (9%), Positives = 21/74 (28%), Gaps = 18/74 (24%)
Query: 22 LSVLGHKIVFICMAKGKPRP--HITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPA 79
+ + C G P ++ + E ++ + +
Sbjct: 292 MRATQLQKNLTCEVWGPTSPKLMLSLKLENKEA----------------KVSKREKAVWV 335
Query: 80 TQMDAGIYECYADN 93
+AG+++C +
Sbjct: 336 LNPEAGMWQCLLSD 349
Score = 30.1 bits (67), Expect = 0.11
Identities = 5/78 (6%), Positives = 13/78 (16%), Gaps = 5/78 (6%)
Query: 20 FPLSVLGHKIVFICMAKGKPRPH----ITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIE 75
F + L A+ V + + + +
Sbjct: 202 FTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLP-LHLTLP 260
Query: 76 IDPATQMDAGIYECYADN 93
+G +
Sbjct: 261 QALPQYAGSGNLTLALEA 278
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 48.1 bits (114), Expect = 4e-08
Identities = 15/71 (21%), Positives = 17/71 (23%), Gaps = 14/71 (19%)
Query: 25 LGHKIVFICMAKGKPRP--HITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQM 82
LG KI+ C W K GV L K E +
Sbjct: 12 LGSKILLTCSLNDSATEVTGHRWLKGGVVLKE------------DALPGQKTEFKVDSDD 59
Query: 83 DAGIYECYADN 93
G Y C
Sbjct: 60 QWGEYSCVFLP 70
Score = 46.2 bits (109), Expect = 2e-07
Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 3/81 (3%)
Query: 26 GHKIVFICMAKGKPRP-HITWFKDGVELYAHMYVNLHE-WHYGTDRIKSKIEIDPAT-QM 82
G + +C ++ P W+K + + + + +S++ I+ +
Sbjct: 98 GETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEA 157
Query: 83 DAGIYECYADNMYNVDTRTFK 103
D G Y C + D
Sbjct: 158 DPGQYRCNGTSSKGSDQAIIT 178
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 48.4 bits (115), Expect = 5e-08
Identities = 10/79 (12%), Positives = 20/79 (25%), Gaps = 14/79 (17%)
Query: 26 GHKIVFICMAK-GKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
G + C A K ++ ++++G S + I
Sbjct: 97 GEPLALRCHAWKDKLVYNVLYYRNGKAF-------------KFFHWNSNLTILKTNISHN 143
Query: 85 GIYECYADNMYNVDTRTFK 103
G Y C + +
Sbjct: 144 GTYHCSGMGKHRYTSAGIS 162
Score = 42.2 bits (99), Expect = 7e-06
Identities = 11/69 (15%), Positives = 15/69 (21%), Gaps = 16/69 (23%)
Query: 26 GHKIVFICMAKGKPRPH-ITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
+ C P WF +G I A+ D+
Sbjct: 16 EETVTLHCEVLHLPGSSSTQWFLNGTATQTS---------------TPSYRITSASVNDS 60
Query: 85 GIYECYADN 93
G Y C
Sbjct: 61 GEYRCQRGL 69
Score = 38.4 bits (89), Expect = 1e-04
Identities = 12/73 (16%), Positives = 23/73 (31%), Gaps = 18/73 (24%)
Query: 26 GHKIVFICMAKGKPRPHIT-----WFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPAT 80
G+ + C K + ++ L + S+ +I A
Sbjct: 185 GNLVTLSCETKLLLQRPGLQLYFSFYMGSK--------TLRGRNTS-----SEYQILTAR 231
Query: 81 QMDAGIYECYADN 93
+ D+G+Y C A
Sbjct: 232 REDSGLYWCEAAT 244
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 47.8 bits (113), Expect = 5e-08
Identities = 13/92 (14%), Positives = 25/92 (27%), Gaps = 12/92 (13%)
Query: 16 QVKYFPLSVL----GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIK 71
+++ P S G + C G P +W N
Sbjct: 2 KIETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTT-------- 53
Query: 72 SKIEIDPATQMDAGIYECYADNMYNVDTRTFK 103
S + ++P + + Y C A + +
Sbjct: 54 STLTMNPVSFGNEHSYLCTATCESRKLEKGIQ 85
Score = 42.5 bits (99), Expect = 4e-06
Identities = 9/81 (11%), Positives = 21/81 (25%), Gaps = 4/81 (4%)
Query: 16 QVKYFPLSVLGHKIVFICMAKG---KPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKS 72
++ G I C R I K + + ++ + +
Sbjct: 96 EIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKS-L 154
Query: 73 KIEIDPATQMDAGIYECYADN 93
++ P + + C A
Sbjct: 155 EVTFTPVIEDIGKVLVCRAKL 175
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain
C2; IG domain, structural protein; NMR {Homo sapiens}
SCOP: b.1.1.4
Length = 104
Score = 45.8 bits (109), Expect = 6e-08
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 5/68 (7%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
GHKI + W K+G E+ + ++ + + K + I + D
Sbjct: 31 GHKIRLTVEL-ADHDAEVKWLKNGQEIQM----SGSKYIFESIGAKRTLTISQCSLADDA 85
Query: 86 IYECYADN 93
Y+C
Sbjct: 86 AYQCVVGG 93
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 47.3 bits (112), Expect = 8e-08
Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 7/68 (10%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
++ C A+G P ++W V G ++ S + + P +
Sbjct: 118 TGEVQLTCQARGYPLAEVSWQNVSVPANTSHIRTPE----GLYQVTSVLRLKPQ---PSR 170
Query: 86 IYECYADN 93
+ C N
Sbjct: 171 NFSCMFWN 178
Score = 42.0 bits (98), Expect = 7e-06
Identities = 10/93 (10%), Positives = 23/93 (24%), Gaps = 4/93 (4%)
Query: 22 LSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHE----WHYGTDRIKSKIEID 77
+G + C + + + ++ + E K+ I
Sbjct: 13 TVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIP 72
Query: 78 PATQMDAGIYECYADNMYNVDTRTFKTDFSITF 110
D+G Y C D + ++
Sbjct: 73 SVQVRDSGQYRCLVICGAAWDYKYLTVKVKASY 105
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 47.3 bits (112), Expect = 8e-08
Identities = 11/69 (15%), Positives = 20/69 (28%), Gaps = 4/69 (5%)
Query: 26 GHKIVFICMAKGKPRPHITWFK-DGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
+ C A+G P+ + W D L + + S + I+
Sbjct: 131 TSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTT---TN 187
Query: 85 GIYECYADN 93
I+ C
Sbjct: 188 EIFYCTFRR 196
Score = 29.6 bits (66), Expect = 0.14
Identities = 10/88 (11%), Positives = 23/88 (26%), Gaps = 18/88 (20%)
Query: 24 VLGHKIVFICMAKGKPRP-----HITWFKDGVELYAHMYVNLHEWHYGTD---RI----- 70
G + C + + + W + + ++ + R
Sbjct: 14 EYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKD 73
Query: 71 -----KSKIEIDPATQMDAGIYECYADN 93
+ ++I DAG+Y C
Sbjct: 74 QLSLGNAALQITDVKLQDAGVYRCMISY 101
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 46.8 bits (111), Expect = 9e-08
Identities = 14/71 (19%), Positives = 19/71 (26%), Gaps = 14/71 (19%)
Query: 26 GHKIVFICMAK-GKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
G + C + ++KDG L I I AT D+
Sbjct: 100 GQPLFLRCHGWRNWDVYKVIYYKDGEAL-------------KYWYENHNISITNATVEDS 146
Query: 85 GIYECYADNMY 95
G Y C
Sbjct: 147 GTYYCTGKVWQ 157
Score = 39.1 bits (91), Expect = 5e-05
Identities = 12/69 (17%), Positives = 17/69 (24%), Gaps = 16/69 (23%)
Query: 26 GHKIVFICMAKGKPRPH-ITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
G + C WF +G S + I A D+
Sbjct: 19 GENVTLTCNGNNFFEVSSTKWFHNGSLSEET---------------NSSLNIVNAKFEDS 63
Query: 85 GIYECYADN 93
G Y+C
Sbjct: 64 GEYKCQHQQ 72
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 46.3 bits (110), Expect = 1e-07
Identities = 16/93 (17%), Positives = 29/93 (31%), Gaps = 22/93 (23%)
Query: 16 QVKYFPLSVL--------GHKIVFICMAK-GKPRPHITWFKDGVELYAHMYVNLHEWHYG 66
V + L + G I+ C + KP +T+F++G
Sbjct: 82 TVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQ-------------K 128
Query: 67 TDRIKSKIEIDPATQMDAGIYECYADNMYNVDT 99
+ I A +G Y C + Y + +
Sbjct: 129 FSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFS 161
Score = 41.0 bits (96), Expect = 1e-05
Identities = 12/69 (17%), Positives = 16/69 (23%), Gaps = 16/69 (23%)
Query: 26 GHKIVFICMAKGKPRPH-ITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
+ C P I WF +G + H A D+
Sbjct: 19 EDSVTLTCQGARSPESDSIQWFHNGNLIPTH---------------TQPSYRFKANNNDS 63
Query: 85 GIYECYADN 93
G Y C
Sbjct: 64 GEYTCQTGQ 72
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 47.2 bits (111), Expect = 1e-07
Identities = 13/84 (15%), Positives = 22/84 (26%), Gaps = 16/84 (19%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVEL----YAHMYVNLHEWHYGTDRIKSK-------- 73
G+ I C ++TW+ ++ +G S+
Sbjct: 151 GNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFS 210
Query: 74 ----IEIDPATQMDAGIYECYADN 93
+ I A DAG C
Sbjct: 211 GARNLVIRAAKITDAGRVWCELAT 234
Score = 36.0 bits (82), Expect = 0.001
Identities = 12/96 (12%), Positives = 20/96 (20%), Gaps = 27/96 (28%)
Query: 25 LGHKIVFIC---MAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSK-------- 73
G + C +A P I+W K + + G +
Sbjct: 16 AGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESF 75
Query: 74 ----------------IEIDPATQMDAGIYECYADN 93
+ + D G Y C
Sbjct: 76 GDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQ 111
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 46.7 bits (110), Expect = 1e-07
Identities = 14/95 (14%), Positives = 27/95 (28%), Gaps = 9/95 (9%)
Query: 26 GHKIVFICMAK-GKPRPHITWFKDGVELYA--------HMYVNLHEWHYGTDRIKSKIEI 76
+ + C ++ G P P ITW+++G L +M G + S + +
Sbjct: 134 SAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYL 193
Query: 77 DPATQMDAGIYECYADNMYNVDTRTFKTDFSITFD 111
+ C A +
Sbjct: 194 RLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLT 228
Score = 31.3 bits (70), Expect = 0.046
Identities = 14/101 (13%), Positives = 26/101 (25%), Gaps = 17/101 (16%)
Query: 24 VLGHKIVFICMAKGKPRPH-ITWFKD---------------GVELYAHMYVNLHEWHYGT 67
+ G ++ C G + + WF G EL M+
Sbjct: 13 MRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQ 72
Query: 68 DRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFSI 108
+ ++ + A D Y C T ++
Sbjct: 73 LDSQGRLVLAEAQVGDERDYVCVVRA-GAAGTAEATARLNV 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 46.8 bits (111), Expect = 2e-07
Identities = 13/82 (15%), Positives = 27/82 (32%), Gaps = 12/82 (14%)
Query: 25 LGHKIVFICMAKGKPRPHITWFKDGVELYA---HMYVNLHEWHYGTDRIKSKIEIDPATQ 81
LG + C K + + ++ + + V++ G +
Sbjct: 260 LGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRN---GD------LFFKKVQV 310
Query: 82 MDAGIYECYADNMYNVDTRTFK 103
D G+Y CYA +T + +
Sbjct: 311 EDGGVYTCYAMGETFNETLSVE 332
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 45.3 bits (107), Expect = 3e-07
Identities = 15/91 (16%), Positives = 22/91 (24%), Gaps = 6/91 (6%)
Query: 24 VLGHKIVFIC--MAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIK----SKIEID 77
LG I I W K + + E D K ++I
Sbjct: 12 ALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIK 71
Query: 78 PATQMDAGIYECYADNMYNVDTRTFKTDFSI 108
D IY+ + + D I
Sbjct: 72 HLKTDDQDIYKVSIYDTKGKNVLEKIFDLKI 102
Score = 43.7 bits (103), Expect = 1e-06
Identities = 10/72 (13%), Positives = 21/72 (29%), Gaps = 16/72 (22%)
Query: 22 LSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQ 81
+S C P + ++DG L ++ ++ T
Sbjct: 111 ISWTCINTTLTCEVMNGTDPELNLYQDGKHL----------------KLSQRVITHKWTT 154
Query: 82 MDAGIYECYADN 93
+ ++C A N
Sbjct: 155 SLSAKFKCTAGN 166
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 43.7 bits (103), Expect = 5e-07
Identities = 12/70 (17%), Positives = 18/70 (25%), Gaps = 4/70 (5%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFK-DGVELYAHMYVNLHEWHY---GTDRIKSKIEIDPA 79
V G + C + W LY L + + I +
Sbjct: 19 VEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDV 78
Query: 80 TQMDAGIYEC 89
+ D G Y C
Sbjct: 79 SLSDEGQYTC 88
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 44.7 bits (105), Expect = 6e-07
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 18/79 (22%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIK-----SKIEIDPAT 80
+ C++ +I W + L T+R+ S + IDP
Sbjct: 125 LDSVTLTCLSND-IGANIQWLFNSQSLQL------------TERMTLSQNNSILRIDPIK 171
Query: 81 QMDAGIYECYADNMYNVDT 99
+ DAG Y+C N +V
Sbjct: 172 REDAGEYQCEISNPVSVRR 190
Score = 37.3 bits (86), Expect = 3e-04
Identities = 9/80 (11%), Positives = 20/80 (25%), Gaps = 11/80 (13%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLH---------EWHYGTDRIKS--KI 74
+ ++ + W+K + + G + I S +
Sbjct: 14 DNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSL 73
Query: 75 EIDPATQMDAGIYECYADNM 94
T D G+Y +
Sbjct: 74 LFQMITMKDMGVYTLDMTDE 93
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 45.1 bits (107), Expect = 7e-07
Identities = 12/82 (14%), Positives = 22/82 (26%), Gaps = 10/82 (12%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVEL--YAHMYVNLHEWHYGTDRIKSKIEIDPATQ 81
G C P + W + +A + + + GT +
Sbjct: 365 SEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGT------LNFSHVLL 416
Query: 82 MDAGIYECYADNMYNVDTRTFK 103
D G+Y C N+ +
Sbjct: 417 SDTGVYTCMVTNVAGNSNASAY 438
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 43.7 bits (103), Expect = 1e-06
Identities = 16/90 (17%), Positives = 27/90 (30%), Gaps = 27/90 (30%)
Query: 16 QVKYFPLSVL-----------GHKIVFICMAKGKPRPHIT-WFKDGVELYAHMYVNLHEW 63
+ + P +V+ + C P + T WF + + +
Sbjct: 1 RTEDLPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ-------- 52
Query: 64 HYGTDRIKSKIEIDPATQMDAGIYECYADN 93
S ID AT D+G Y C +
Sbjct: 53 -------ASSYFIDAATVNDSGEYRCQTNL 75
Score = 42.2 bits (99), Expect = 5e-06
Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 14/69 (20%)
Query: 26 GHKIVFICMAK-GKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
I C + +T+ ++G + +H+ S I AT D+
Sbjct: 103 EDPIHLRCHSWKNTALHKVTYLQNGKDR--------KYFHHN-----SDFHIPKATLKDS 149
Query: 85 GIYECYADN 93
G Y C
Sbjct: 150 GSYFCRGLV 158
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 43.9 bits (103), Expect = 2e-06
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Query: 26 GHKIVFICMAKG-KPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
+ C++ G +P ITW D + V GT + S + P++Q+D
Sbjct: 131 EPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFL--SGTVTVTSLWILVPSSQVDG 188
Query: 85 GIYECYADN 93
C ++
Sbjct: 189 KQVTCKVEH 197
Score = 29.7 bits (66), Expect = 0.17
Identities = 11/87 (12%), Positives = 21/87 (24%), Gaps = 18/87 (20%)
Query: 24 VLGHKIVFICMAKGKPRP-----HITWFKDG----VELYAHMY-VNLHEWHYGTDRIKSK 73
LG + C + +TW + G + ++ + E
Sbjct: 12 FLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARL 71
Query: 74 --------IEIDPATQMDAGIYECYAD 92
+ + D G Y C
Sbjct: 72 GAELRDASLRMFGLRVEDEGSYTCLFV 98
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 42.8 bits (101), Expect = 4e-06
Identities = 15/82 (18%), Positives = 22/82 (26%), Gaps = 9/82 (10%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAH--MYVNLHEWHYGTDRIKSKIEIDPATQ 81
G C A ++W + H V + GT + T
Sbjct: 354 TEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGT------LNFTNVTV 406
Query: 82 MDAGIYECYADNMYNVDTRTFK 103
D G+Y C N T +
Sbjct: 407 QDTGMYTCMVSNSVGNTTASAT 428
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 42.2 bits (99), Expect = 5e-06
Identities = 14/69 (20%), Positives = 22/69 (31%), Gaps = 14/69 (20%)
Query: 26 GHKIVFICMAKGKPRPH-ITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
I C + H +T+ ++G +H+ S I AT D+
Sbjct: 103 EDPIHLRCHSWKNTALHKVTYLQNGK--------GRKYFHHN-----SDFYIPKATLKDS 149
Query: 85 GIYECYADN 93
G Y C
Sbjct: 150 GSYFCRGLV 158
Score = 41.0 bits (96), Expect = 2e-05
Identities = 14/69 (20%), Positives = 19/69 (27%), Gaps = 16/69 (23%)
Query: 26 GHKIVFICMAKGKPRPHIT-WFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
+ C P T WF + + + S ID AT D+
Sbjct: 22 KDSVTLKCQGAYSPEDQSTQWFHNESLISSQ---------------ASSYFIDAATVDDS 66
Query: 85 GIYECYADN 93
G Y C
Sbjct: 67 GEYRCQTQL 75
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 42.1 bits (98), Expect = 8e-06
Identities = 14/76 (18%), Positives = 23/76 (30%), Gaps = 2/76 (2%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMD 83
G F C A G+ + G+++ + R + + T+ D
Sbjct: 177 NAGQFATFQCSAIGRTVAGDRLWLQGIDV--RDAPLKEIKVTSSRRFIASFNVVNTTKRD 234
Query: 84 AGIYECYADNMYNVDT 99
AG Y C V
Sbjct: 235 AGKYRCMIRTEGGVGI 250
Score = 26.7 bits (58), Expect = 1.8
Identities = 5/61 (8%), Positives = 10/61 (16%), Gaps = 14/61 (22%)
Query: 33 CMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYAD 92
P + W G W+ + I +
Sbjct: 98 VKVNNGPLGNPIWNISG--------DPTRTWNRAE------LAISTFWPNFYQVIFEVIT 143
Query: 93 N 93
+
Sbjct: 144 S 144
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 40.2 bits (93), Expect = 1e-05
Identities = 17/84 (20%), Positives = 25/84 (29%), Gaps = 7/84 (8%)
Query: 26 GHKIVFICMAKGKP---RPHITWFKDGVELYAH---MYVNLHEWHYGTDRIKS-KIEIDP 78
G V + GK +P I WFK + E H + + ++ I
Sbjct: 27 GKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGK 86
Query: 79 ATQMDAGIYECYADNMYNVDTRTF 102
D G Y D+ F
Sbjct: 87 VVLGDRGYYRLEVKAKDTCDSCGF 110
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 41.1 bits (95), Expect = 2e-05
Identities = 10/73 (13%), Positives = 19/73 (26%), Gaps = 2/73 (2%)
Query: 23 SVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQM 82
+ + F+C + G + + + I +
Sbjct: 243 PEVANVAKFLCRQSSGENCDVVVNTLGKRA--PAFEGRILLNPQDKDGSFSVVITGLRKE 300
Query: 83 DAGIYECYADNMY 95
DAG Y C A +
Sbjct: 301 DAGRYLCGAHSDG 313
Score = 36.1 bits (82), Expect = 0.001
Identities = 13/90 (14%), Positives = 22/90 (24%), Gaps = 14/90 (15%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKS----------- 72
V G + +C K I ++ L +
Sbjct: 344 VAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGN 403
Query: 73 ---KIEIDPATQMDAGIYECYADNMYNVDT 99
+ ++ T DAG Y C + T
Sbjct: 404 GTFTVILNQLTSRDAGFYWCLTNGDTLWRT 433
Score = 35.7 bits (81), Expect = 0.002
Identities = 9/73 (12%), Positives = 19/73 (26%), Gaps = 2/73 (2%)
Query: 31 FICMAKGKPRPHITWFKDGVELYA--HMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYE 88
F C + W G + + + + + ++ T+ D G Y
Sbjct: 466 FPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYW 525
Query: 89 CYADNMYNVDTRT 101
C +
Sbjct: 526 CGVKQGHFYGETA 538
Score = 33.4 bits (75), Expect = 0.009
Identities = 12/87 (13%), Positives = 26/87 (29%), Gaps = 12/87 (13%)
Query: 29 IVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDP---------- 78
+ C K + + LY + ++ + + +++I
Sbjct: 130 VTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVI 189
Query: 79 --ATQMDAGIYECYADNMYNVDTRTFK 103
DAG Y C A + N + +
Sbjct: 190 NQLRLSDAGQYLCQAGDDSNSNKKNAD 216
Score = 30.7 bits (68), Expect = 0.075
Identities = 18/100 (18%), Positives = 30/100 (30%), Gaps = 7/100 (7%)
Query: 3 TEDSSLSLKRSCQQVKYFPLSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHE 62
E +S+S+ C Y P SV H + C + +G Y
Sbjct: 13 VEGNSVSIT--CY---YPPTSVNRHTRKYWCRQGARGGCITLISSEGYVS--SKYAGRAN 65
Query: 63 WHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTF 102
+ + I +Q D+G Y+C +
Sbjct: 66 LTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDV 105
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 40.7 bits (95), Expect = 2e-05
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 4/69 (5%)
Query: 26 GHKIVFICMAKG-KPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
+ IC G P PH++W ++G EL A + + SK++ +
Sbjct: 121 SNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMT---TN 177
Query: 85 GIYECYADN 93
+ C
Sbjct: 178 HSFMCLIKY 186
Score = 27.6 bits (61), Expect = 0.67
Identities = 14/83 (16%), Positives = 21/83 (25%), Gaps = 10/83 (12%)
Query: 22 LSVLGHKIVFICMAKGKPRPH----ITWFKDGVELYAHMYVNLHEWHYGTDRIKSK---- 73
+ C I W K+ + M +++ W +R
Sbjct: 5 TKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNN 64
Query: 74 --IEIDPATQMDAGIYECYADNM 94
I I D G YEC
Sbjct: 65 LSIVILALRPSDEGTYECVVLKY 87
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 41.0 bits (96), Expect = 2e-05
Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 5/70 (7%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G F C P +TW KD EL ++ + + I+ D G
Sbjct: 497 GQSANFYCRVIASSPPVVTWHKDDREL-----KQSVKYMKRYNGNDYGLTINRVKGDDKG 551
Query: 86 IYECYADNMY 95
Y A N Y
Sbjct: 552 EYTVRAKNSY 561
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 40.2 bits (93), Expect = 2e-05
Identities = 15/70 (21%), Positives = 18/70 (25%), Gaps = 4/70 (5%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFK-DGVELYAHMYVNLHEWHYGTDRIKSK---IEIDPA 79
V G +V C K + W LY L + I I
Sbjct: 51 VAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNV 110
Query: 80 TQMDAGIYEC 89
D G Y C
Sbjct: 111 ALADEGEYTC 120
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 39.6 bits (92), Expect = 2e-05
Identities = 13/72 (18%), Positives = 24/72 (33%), Gaps = 4/72 (5%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFK-DGVELYAHMYVNLHEWHYGTDRIKSK---IEIDPA 79
G + C+ + + W G ++ + Y L Y + I +
Sbjct: 14 EEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNV 73
Query: 80 TQMDAGIYECYA 91
T D G+Y+C
Sbjct: 74 TLQDEGVYKCLH 85
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 39.9 bits (92), Expect = 3e-05
Identities = 11/68 (16%), Positives = 19/68 (27%), Gaps = 15/68 (22%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
++ C G I W KDG + + K+ + + G
Sbjct: 122 DGSVLLTC---GLTDKTIKWLKDGSIIS------------PLNATKNTWNLGNNAKDPRG 166
Query: 86 IYECYADN 93
Y+C
Sbjct: 167 TYQCQGAK 174
Score = 36.8 bits (84), Expect = 4e-04
Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 17/75 (22%)
Query: 20 FPLSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPA 79
+ +S+ G + C ++ W K+G EL + + +
Sbjct: 8 YKVSISGTSVELTCPLDSDE--NLKWEKNGQEL--------------PQKHDKHLVLQDF 51
Query: 80 TQM-DAGIYECYADN 93
+++ D+G Y CY
Sbjct: 52 SEVEDSGYYVCYTPA 66
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 37.5 bits (86), Expect = 3e-04
Identities = 10/72 (13%), Positives = 20/72 (27%), Gaps = 9/72 (12%)
Query: 23 SVLGHKIVFICMAK-GKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQ 81
S+ G + C + + W +H + ++ +
Sbjct: 18 SLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSH--------PSRWAGMGRRLLLRSVQL 69
Query: 82 MDAGIYECYADN 93
D+G Y CY
Sbjct: 70 HDSGNYSCYRAG 81
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 35.9 bits (82), Expect = 4e-04
Identities = 12/74 (16%), Positives = 23/74 (31%), Gaps = 7/74 (9%)
Query: 20 FPLSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPA 79
+ +S+ G ++ C P I W + + +K E++
Sbjct: 15 YKVSISGTTVILTC--PQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELE-- 70
Query: 80 TQMDAGIYECYADN 93
+G Y CY
Sbjct: 71 ---QSGYYVCYPRG 81
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 36.7 bits (84), Expect = 6e-04
Identities = 13/83 (15%), Positives = 24/83 (28%), Gaps = 19/83 (22%)
Query: 26 GHKIVFICMAKG-KPRPH---ITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQ 81
G G +P P TW KD + + + + AT
Sbjct: 17 GDGFTLTATVAGDEPLPSNLTYTWTKDDQPH---------------ENNTATLTVADATS 61
Query: 82 MDAGIYECYADNMYNVDTRTFKT 104
+AG Y+ + + + +
Sbjct: 62 ENAGSYKVTVQDTDTMTSVESEV 84
Score = 30.2 bits (67), Expect = 0.11
Identities = 11/78 (14%), Positives = 17/78 (21%), Gaps = 21/78 (26%)
Query: 32 ICMAKGKPRP-----HITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGI 86
+ + GK H +W K + I I T G+
Sbjct: 116 VKFSGGKTPADNYELHYSWSKGEDVIDTT----------------QDITIQEFTADKNGV 159
Query: 87 YECYADNMYNVDTRTFKT 104
Y + T
Sbjct: 160 YTVKVWGESEDSAASAST 177
Score = 29.8 bits (66), Expect = 0.17
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 5/75 (6%)
Query: 32 ICMAKGKPRPHIT--WF--KDGVELYAHMYVNLHEWHYGTDRIKS-KIEIDPATQMDAGI 86
+ + G P I W+ ++G + + E G + + AT D
Sbjct: 213 VGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAK 272
Query: 87 YECYADNMYNVDTRT 101
+ C A ++ T
Sbjct: 273 FWCVAKLYQQIEDET 287
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 36.4 bits (83), Expect = 8e-04
Identities = 12/101 (11%), Positives = 22/101 (21%), Gaps = 22/101 (21%)
Query: 25 LGHKIVFICMAKGKPRPH---ITWFKDGVELYAHMYVNLH----------EWHYGTDRIK 71
+G C + + W V + +R+
Sbjct: 132 VGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVD 191
Query: 72 SK---------IEIDPATQMDAGIYECYADNMYNVDTRTFK 103
I++ + D GIY C +T
Sbjct: 192 LTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIV 232
Score = 35.6 bits (81), Expect = 0.001
Identities = 11/88 (12%), Positives = 23/88 (26%), Gaps = 18/88 (20%)
Query: 24 VLGHKIVFICM---AKGKPRPHITWFK---------------DGVELYAHMYVNLHEWHY 65
+G ++ C+ + K + W + + + N
Sbjct: 18 HVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVG 77
Query: 66 GTDRIKSKIEIDPATQMDAGIYECYADN 93
T + + + D GIY C
Sbjct: 78 DTFHNDGSLLLQDVQKADEGIYTCEIRL 105
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 35.3 bits (81), Expect = 0.001
Identities = 11/89 (12%), Positives = 23/89 (25%), Gaps = 8/89 (8%)
Query: 24 VLGHKIVFIC--MAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSK----IEID 77
LGH I + W + + + + + + ++I
Sbjct: 9 ALGHGINLNIPNFQMTDDIDEVRWERGSTLVAE--FKRKMKPFLKSGAFEILANGDLKIK 66
Query: 78 PATQMDAGIYECYADNMYNVDTRTFKTDF 106
T+ D+G Y + D
Sbjct: 67 NLTRDDSGTYNVTVYSTNGTRILNKALDL 95
Score = 33.4 bits (76), Expect = 0.007
Identities = 6/72 (8%), Positives = 14/72 (19%), Gaps = 16/72 (22%)
Query: 22 LSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQ 81
+ C + ++ L R + +
Sbjct: 106 IYWECSNATLTCEVLEGTDVELKLYQGKEHL----------------RSLRQKTMSYQWT 149
Query: 82 MDAGIYECYADN 93
++C A N
Sbjct: 150 NLRAPFKCKAVN 161
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell
adhesion protein, immunoglobulin fold, I-SET fold, cell
adhesion glycoprotein; 1.9A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Length = 210
Score = 34.5 bits (78), Expect = 0.003
Identities = 15/90 (16%), Positives = 23/90 (25%), Gaps = 21/90 (23%)
Query: 15 QQVKYFPLSV----------LGHKIVFICMAKG-KPRPHITWFKDGVELYAHMYVNLHEW 63
Q ++ PL V LG C + W L
Sbjct: 1 QSLQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSL----------G 50
Query: 64 HYGTDRIKSKIEIDPATQMDAGIYECYADN 93
+D +S + + A+ AG C
Sbjct: 51 AVQSDTGRSVLTVRNASLSAAGTRVCVGSC 80
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 33.7 bits (77), Expect = 0.003
Identities = 14/75 (18%), Positives = 21/75 (28%), Gaps = 11/75 (14%)
Query: 24 VLGHKIVFICMAKGKPRP--HITWFKDGVELYAHMYVNLHEWHYG---TDRIKSK----I 74
G I+ C + W + L + WH DR+ +
Sbjct: 16 EKGGSIILQCHLSSTTAQVTQVNWEQQDQLL--AICNADLGWHISPSFKDRVAPGPGLGL 73
Query: 75 EIDPATQMDAGIYEC 89
+ T D G Y C
Sbjct: 74 TLQSLTVNDTGEYFC 88
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 34.1 bits (78), Expect = 0.003
Identities = 12/75 (16%), Positives = 21/75 (28%), Gaps = 6/75 (8%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIE-----IDP 78
V+ + F P + W K ++ + +R+ I
Sbjct: 8 VVYGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYN 66
Query: 79 ATQMDAGIYECYADN 93
T D YE + N
Sbjct: 67 LTSSDEDEYEMESPN 81
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 33.9 bits (77), Expect = 0.005
Identities = 10/69 (14%), Positives = 21/69 (30%), Gaps = 4/69 (5%)
Query: 26 GHKIVFICMAKG-KPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
I C + G P+P I W + E + + G + + + + +
Sbjct: 133 DGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGS---SG 189
Query: 85 GIYECYADN 93
C +
Sbjct: 190 EGVSCTIRS 198
Score = 31.2 bits (70), Expect = 0.044
Identities = 14/85 (16%), Positives = 24/85 (28%), Gaps = 18/85 (21%)
Query: 24 VLGHKIVFIC---MAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTD-----RI----- 70
++G C + W + ++Y + E R
Sbjct: 17 MVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRD 76
Query: 71 -----KSKIEIDPATQMDAGIYECY 90
K+ + I T D+G Y CY
Sbjct: 77 GITAGKAALRIHNVTASDSGKYLCY 101
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 32.5 bits (74), Expect = 0.016
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 5/71 (7%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G +++ C + H K+G+ + + H G K+ I P AG
Sbjct: 133 GERVILQCWSDIMF-EHFFLHKEGI--SKDPSRLVGQIHDGVS--KANFSIGPMMLALAG 187
Query: 86 IYECYADNMYN 96
Y CY +
Sbjct: 188 TYRCYGSVTHT 198
Score = 26.4 bits (58), Expect = 2.2
Identities = 8/56 (14%), Positives = 18/56 (32%), Gaps = 9/56 (16%)
Query: 41 PHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN 96
+ +K+ +H + + + P T AG Y C + ++
Sbjct: 52 NNFMLYKED---------RIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSHPHS 98
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 31.1 bits (70), Expect = 0.028
Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 7/70 (10%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSK-----IEIDPAT 80
G VF TWF +G EL ++ E RI+ K + +
Sbjct: 23 GEDAVFSLDLSTII--QGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVK 80
Query: 81 QMDAGIYECY 90
D+G +
Sbjct: 81 HQDSGALVGF 90
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC
complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A
{Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A*
3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A*
3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A*
2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Length = 207
Score = 31.0 bits (70), Expect = 0.055
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 4/73 (5%)
Query: 25 LGHKIVFICMAKG-KPRP---HITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPAT 80
+ C+ W+ DGVE++ E + T R+ S + +
Sbjct: 17 ISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQD 76
Query: 81 QMDAGIYECYADN 93
++ Y+C N
Sbjct: 77 WLNGKEYKCKVSN 89
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 30.7 bits (69), Expect = 0.057
Identities = 10/90 (11%), Positives = 22/90 (24%), Gaps = 11/90 (12%)
Query: 24 VLGHKIVFIC-MAKGKPRPHITWFKDGVELYAHMYVN--------LHEWHYGTDRIKSK- 73
+LG + G+ ITW + L + +
Sbjct: 11 ILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSY 70
Query: 74 -IEIDPATQMDAGIYECYADNMYNVDTRTF 102
+++ D G Y + ++
Sbjct: 71 SLQLSNLKMEDTGSYRAQISTKTSAKLSSY 100
Score = 25.7 bits (56), Expect = 2.8
Identities = 9/69 (13%), Positives = 16/69 (23%), Gaps = 16/69 (23%)
Query: 26 GHKIVFICMAK-GKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 84
++ C + W G L + + + W
Sbjct: 124 TCELHLTCSVEDADDNVSFRWEALGNTLSSQPNLTVS-WDPRIS--------------SE 168
Query: 85 GIYECYADN 93
Y C A+N
Sbjct: 169 QDYTCIAEN 177
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 30.6 bits (69), Expect = 0.060
Identities = 10/57 (17%), Positives = 16/57 (28%), Gaps = 6/57 (10%)
Query: 39 PRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY 95
K+ L + K++ I T+ AG Y CY +
Sbjct: 31 EAREYRLDKEESPAPWDRQNPLEPKN------KARFSIPSMTEDYAGRYRCYYRSPV 81
Score = 25.9 bits (57), Expect = 2.5
Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 5/65 (7%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G + +C ++ P K+ + E + ++ + P T + G
Sbjct: 114 GKSVTLLCQSR-SPMDTFLLCKERAA--HPLLCLRSEHGAQQHQ--AEFPMSPVTSVHGG 168
Query: 86 IYECY 90
Y C+
Sbjct: 169 TYRCF 173
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 31.0 bits (69), Expect = 0.061
Identities = 10/76 (13%), Positives = 21/76 (27%), Gaps = 11/76 (14%)
Query: 21 PLSVLGHKIVFICMAKG-KPRPHIT--WFKDGVELYAHMYVNLHEWHYGTDRIKSKIEID 77
+G + C +G PR ++T + EL V + + +
Sbjct: 96 SWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAV--------GEPAEVTTTVL 147
Query: 78 PATQMDAGIYECYADN 93
+ C +
Sbjct: 148 VRRDHHGANFSCRTEL 163
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer
cell, HLA, major histocompatibility complex class I
(MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 257
Score = 30.7 bits (69), Expect = 0.072
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 42 HITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN 96
H ++G + + E H G K+ I P Q AG Y CY ++
Sbjct: 36 HFLLHREGK--FKDTLHLIGEHHDGVS--KANFSIGPMMQDLAGTYRCYGSVTHS 86
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm,
mouse IGG, zinc-finger, DNA-binding, RNA-binding,
tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC;
1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Length = 207
Score = 30.2 bits (68), Expect = 0.10
Identities = 11/48 (22%), Positives = 20/48 (41%)
Query: 42 HITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYEC 89
+WF D VE++ E T R S++ I ++ ++C
Sbjct: 38 QFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKC 85
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 30.4 bits (68), Expect = 0.11
Identities = 8/92 (8%), Positives = 22/92 (23%), Gaps = 15/92 (16%)
Query: 21 PLSVLGHKIVFICMAK-------GKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSK 73
P+ L +C+ K +I W + + Y ++ +
Sbjct: 13 PVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIIN-RTASSVTFTDI 71
Query: 74 IEIDPATQMDAGIYECYADNMYNVDTRTFKTD 105
++ C ++ +
Sbjct: 72 ASLN-------IQLTCNILTFGQLEQNVYGIT 96
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C
region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
b.1.1.2
Length = 444
Score = 29.9 bits (67), Expect = 0.12
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Query: 31 FICMAKG----KPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGI 86
C+ P I+WF + VE++ E + T R+ S + I M
Sbjct: 260 VTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKE 319
Query: 87 YECYADN 93
++C +N
Sbjct: 320 FKCKVNN 326
>3gbl_A BETA2-microglobulin; immune response, immunoglobulin domain, MHC
I, secreted, immune system; 2.10A {Ctenopharyngodon
idella}
Length = 97
Score = 29.2 bits (66), Expect = 0.12
Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 13/81 (16%)
Query: 16 QVKYFPLS--VLGHKIVFICMAKG-KPRP-HITWFKDGVELYAHMYVNL---HEWHYGTD 68
+++ + G + IC G P I K+G + +L W +
Sbjct: 6 KIQVYSHYPGEYGKENTLICYVSGFHPPDISIELLKNGEVIADAQQTDLAFEKGWQF--- 62
Query: 69 RIKSKIEIDPATQMDAGIYEC 89
+ + P + Y C
Sbjct: 63 HLTKSVSFKPE---KSDEYSC 80
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.13
Identities = 18/109 (16%), Positives = 36/109 (33%), Gaps = 21/109 (19%)
Query: 3 TEDSSLSL--KRSCQQVKYFPLSVLGHKIVFICM-AKGKPRPHITWFKDGVELYAHMYVN 59
+D S+ K + +V G +F + +K + E+
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE------------EMVQKFVEE 85
Query: 60 LHEWHYG--TDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDF 106
+ +Y IK++ + P+ +Y D +YN D + F
Sbjct: 86 VLRINYKFLMSPIKTE-QRQPSMMTR--MYIEQRDRLYN-DNQVFAKYN 130
Score = 29.4 bits (65), Expect = 0.22
Identities = 14/94 (14%), Positives = 23/94 (24%), Gaps = 19/94 (20%)
Query: 3 TEDSSLSLKRSCQQVKYFPLSVLGHKI--VFICMAKGKPRPHI-TWFKDGVELYAHMYVN 59
T D SL + L + + R + TW
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW-------------- 344
Query: 60 LHEW-HYGTDRIKSKIEIDPATQMDAGIYECYAD 92
W H D++ + IE A + +
Sbjct: 345 -DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 29.8 bits (67), Expect = 0.13
Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 9/66 (13%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G I C + P + K+G H ++ + P +G
Sbjct: 120 GENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANF---------SLGPVDLNVSG 170
Query: 86 IYECYA 91
IY CY
Sbjct: 171 IYRCYG 176
Score = 27.5 bits (61), Expect = 0.69
Identities = 11/70 (15%), Positives = 19/70 (27%), Gaps = 7/70 (10%)
Query: 25 LGHKIVFICMA-KGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMD 83
L + C A + + K+ Y + + + ID
Sbjct: 22 LDGSVKIQCQAIREAYLTQLMIIKNST------YREIGRRLKFWNETDPEFVIDHMDANK 75
Query: 84 AGIYECYADN 93
AG Y+C
Sbjct: 76 AGRYQCQYRI 85
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin,
glycosylation, immune system; HET: NAG FUC MAN GAL;
2.13A {Mus musculus}
Length = 218
Score = 29.9 bits (67), Expect = 0.14
Identities = 13/52 (25%), Positives = 23/52 (44%)
Query: 42 HITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADN 93
I+WF + VE++ E + T R+ S + I M ++C +N
Sbjct: 46 QISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNN 97
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 29.6 bits (65), Expect = 0.17
Identities = 10/87 (11%), Positives = 19/87 (21%), Gaps = 9/87 (10%)
Query: 5 DSSLSLKRSCQQVKYFPLSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWH 64
+ + + C + +W + H
Sbjct: 494 HKECPNPKPDKAPLQKVSLAPNSRYYLSCPMES-RHATYSWRHKENVEQSC-----EPGH 547
Query: 65 YGTDRIKSKIEIDPATQMDAGIYECYA 91
+ I + I+ T G Y C A
Sbjct: 548 QSPNCI---LFIENLTAQQYGHYFCEA 571
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 29.1 bits (64), Expect = 0.20
Identities = 15/72 (20%), Positives = 22/72 (30%), Gaps = 4/72 (5%)
Query: 26 GHKIVFICMAK-GKPRPHITWFKDGVELYAHMYVNLH---EWHYGTDRIKSKIEIDPATQ 81
G C K RP++TW K ++ + V W + P
Sbjct: 29 GELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHL 88
Query: 82 MDAGIYECYADN 93
D G Y C +
Sbjct: 89 SDNGSYSCSTNF 100
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 28.7 bits (64), Expect = 0.25
Identities = 13/85 (15%), Positives = 24/85 (28%), Gaps = 18/85 (21%)
Query: 24 VLGHKIVFIC---MAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTD-----RIKSK-- 73
++G + C K + W++ H+Y N + R +
Sbjct: 19 LVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKE 78
Query: 74 --------IEIDPATQMDAGIYECY 90
+ I D G Y C+
Sbjct: 79 SIGEGKVALRIQNVRFSDEGGYTCF 103
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 29.3 bits (64), Expect = 0.27
Identities = 10/65 (15%), Positives = 18/65 (27%), Gaps = 8/65 (12%)
Query: 27 HKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGI 86
C K + W L A + I ++ D+G+
Sbjct: 549 GTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRKN-------LLIFNLSEGDSGV 600
Query: 87 YECYA 91
Y+C +
Sbjct: 601 YQCLS 605
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine;
HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Length = 240
Score = 28.8 bits (64), Expect = 0.28
Identities = 13/61 (21%), Positives = 26/61 (42%)
Query: 29 IVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYE 88
V + ++ P W+ DGVE++ E + T R+ S + + ++ Y+
Sbjct: 46 CVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYK 105
Query: 89 C 89
C
Sbjct: 106 C 106
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 28.3 bits (63), Expect = 0.35
Identities = 10/74 (13%), Positives = 20/74 (27%), Gaps = 9/74 (12%)
Query: 38 KPRPHITWFKDGVELYAHMYVNLHEWHYG---TDRIK-----SKIEIDPATQMDAGIYEC 89
+TW + + N + + DR+ + I ++ D G Y
Sbjct: 27 ASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYM 86
Query: 90 YADNMYNVDTRTFK 103
+ D
Sbjct: 87 RMLHE-TEDQWKIT 99
Score = 27.5 bits (61), Expect = 0.70
Identities = 6/65 (9%), Positives = 13/65 (20%), Gaps = 16/65 (24%)
Query: 29 IVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYE 88
C + ++ L R + + ++
Sbjct: 118 ATLTCEVLEGTDVELKLYQGKEHL----------------RSLRQKTMSYQWTNLRAPFK 161
Query: 89 CYADN 93
C A N
Sbjct: 162 CKAVN 166
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 28.3 bits (62), Expect = 0.43
Identities = 5/61 (8%), Positives = 13/61 (21%), Gaps = 11/61 (18%)
Query: 33 CMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYAD 92
+ P +W + + S++ + P + C
Sbjct: 149 GSCEAGPPLTFSWTGNALSPLD-----------PETTRSSELTLTPRPEDHGTNLTCQMK 197
Query: 93 N 93
Sbjct: 198 R 198
>1lk2_B Beta-2-microglobulin; class I MHC-peptide complex, high
resolution, anisotropic AN refinement, immune system;
HET: NAG FUC; 1.35A {Mus musculus} SCOP: b.1.1.2 PDB:
1bqh_B 1cd1_B 1fo0_L* 1fzj_B* 1fzm_B* 1fzo_B* 1g6r_L
1fzk_B* 1g7q_B* 1hoc_B 1inq_B 1juf_B 1k8d_B 1kbg_L*
1kj2_L* 1kj3_L 1kpu_B* 1kpv_B* 1ld9_B 1ldp_L* ...
Length = 99
Score = 27.7 bits (62), Expect = 0.44
Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 5/46 (10%)
Query: 25 LGHKIVFICMAKGKPRPHI--TWFKDGVELYAHMYVNLH---EWHY 65
G + C PHI K+G ++ ++ +W +
Sbjct: 17 NGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSF 62
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 28.3 bits (63), Expect = 0.46
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 4/73 (5%)
Query: 25 LGHKIVFICMAKG-KPRP---HITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPAT 80
+ C+ W+ DGVE++ E + T R+ S + +
Sbjct: 263 ISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQD 322
Query: 81 QMDAGIYECYADN 93
++ Y+C N
Sbjct: 323 WLNGKEYKCKVSN 335
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 28.3 bits (63), Expect = 0.47
Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 4/71 (5%)
Query: 21 PLSVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPAT 80
P+ G + C ++ K+G + + L+ + ++ + P +
Sbjct: 110 PVVNSGGNVTLQCDSQVAF-DGFILCKEGEDEHPQ---CLNSQPHARGSSRAIFSVGPVS 165
Query: 81 QMDAGIYECYA 91
Y CYA
Sbjct: 166 PSRRWWYRCYA 176
Score = 26.7 bits (59), Expect = 1.4
Identities = 7/50 (14%), Positives = 12/50 (24%), Gaps = 6/50 (12%)
Query: 42 HITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYA 91
+++ + K + I T G Y CY
Sbjct: 34 EYRLYREKKTAPWITRIPQELVK------KGQFPIPSITWEHTGRYRCYY 77
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5
isoform 1; immunoglobulin-like fold, immune system;
1.85A {Homo sapiens}
Length = 196
Score = 28.3 bits (63), Expect = 0.47
Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 6/54 (11%)
Query: 42 HITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY 95
K+G L + K++ I T+ AG Y CY +
Sbjct: 34 EYRLVKEGSPEPWDTQNPLEPKN------KARFSIPSMTEHHAGRYRCYYYSPA 81
Score = 24.8 bits (54), Expect = 7.5
Identities = 4/16 (25%), Positives = 6/16 (37%)
Query: 76 IDPATQMDAGIYECYA 91
+ P T + CY
Sbjct: 160 VGPVTPSHRWMLRCYG 175
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune
system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
b.1.1.2
Length = 344
Score = 28.3 bits (63), Expect = 0.54
Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 2/84 (2%)
Query: 23 SVLGHKIVFICMAKG-KPRPH-ITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPAT 80
+ +++ C+ KG P + W +G + G+ + SK+ +D +
Sbjct: 254 ELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSR 313
Query: 81 QMDAGIYECYADNMYNVDTRTFKT 104
++ C + + T K+
Sbjct: 314 WQQGNVFSCSVMHEALHNHYTQKS 337
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 27.9 bits (62), Expect = 0.66
Identities = 8/49 (16%), Positives = 10/49 (20%), Gaps = 6/49 (12%)
Query: 45 WFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADN 93
+G + K K I AG Y C
Sbjct: 39 LHFEGSLFA------VDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRV 81
Score = 25.6 bits (56), Expect = 3.6
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 76 IDPATQMDAGIYECYA 91
+ P T G Y C+
Sbjct: 156 LGPVTTAHRGTYRCFG 171
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 27.9 bits (62), Expect = 0.68
Identities = 8/55 (14%), Positives = 10/55 (18%), Gaps = 6/55 (10%)
Query: 39 PRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADN 93
+G + K K I AG Y C
Sbjct: 30 GAVEYQLHFEGSLFA------VDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRV 78
Score = 25.2 bits (55), Expect = 5.5
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 76 IDPATQMDAGIYECYA 91
+ P T G Y C+
Sbjct: 153 LGPVTTAHRGTYRCFG 168
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG
FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP:
b.1.1.2 b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 27.6 bits (61), Expect = 0.76
Identities = 10/48 (20%), Positives = 20/48 (41%)
Query: 42 HITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYEC 89
+WF D VE++ + T R S++ I ++ ++C
Sbjct: 52 RFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKC 99
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL;
2.80A {Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 27.1 bits (59), Expect = 0.78
Identities = 19/77 (24%), Positives = 27/77 (35%), Gaps = 9/77 (11%)
Query: 26 GHKIVFIC-MAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSK----IEIDPAT 80
G C + RPH+TW K L V L + K+ + +P
Sbjct: 26 GDPFELECPVKYCANRPHVTWCK----LNGTTCVKLEDRQTSWKEEKNISFFILHFEPVL 81
Query: 81 QMDAGIYECYADNMYNV 97
D G Y C A+ N+
Sbjct: 82 PNDNGSYRCSANFQSNL 98
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 27.6 bits (61), Expect = 0.85
Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 4/73 (5%)
Query: 25 LGHKIVFICMAKG-KPRP---HITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPAT 80
+ C+ +WF D VE++ E T R+ S + I
Sbjct: 244 ITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQD 303
Query: 81 QMDAGIYECYADN 93
++ ++C ++
Sbjct: 304 WLNGKEFKCRVNS 316
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 27.4 bits (59), Expect = 1.1
Identities = 14/71 (19%), Positives = 16/71 (22%), Gaps = 16/71 (22%)
Query: 23 SVLGHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQM 82
G +V C ITW D L I
Sbjct: 18 DAPGEMVVLTC--DTPEEDGITWTLDQSSEVLGSGKTLT--------------IQVKEFG 61
Query: 83 DAGIYECYADN 93
DAG Y C+
Sbjct: 62 DAGQYTCHKGG 72
>3o81_A Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like)
domain, histocompatibi antigen, MHC class I molecule
from B21 chicken, immune SYST; 2.00A {Gallus gallus}
Length = 119
Score = 26.6 bits (59), Expect = 1.3
Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 25 LGHKIVFICMAKG-KPRP-HITWFKDGVEL 52
G K V C A G P IT KDGV +
Sbjct: 37 AGTKNVLNCFAAGFHPPKISITLMKDGVPM 66
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 26.8 bits (59), Expect = 1.4
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 42 HITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN 96
H ++G ++ + E H G K+ I TQ AG Y CY ++
Sbjct: 37 HFLLHREG--MFNDTLRLIGEHHDGVS--KANFSISRMTQDLAGTYRCYGSVTHS 87
>1bii_B Beta-2 microglobulin, MHC class I H-2DD; complex (MHC I/peptide),
major histocompatibility complex class I DD,
transmembrane, glycoprotein; 2.40A {Mus musculus} SCOP:
b.1.1.2
Length = 119
Score = 26.3 bits (58), Expect = 1.5
Identities = 7/46 (15%), Positives = 15/46 (32%), Gaps = 5/46 (10%)
Query: 25 LGHKIVFICMAKG--KPRPHITWFKDGVELYAHMYVNLH---EWHY 65
G + C P I K+G ++ ++ +W +
Sbjct: 37 NGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSF 82
>3p73_B Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like)
domain, histocompatibi antigen, immune system; HET:
16A; 1.32A {Gallus gallus} PDB: 3p77_B* 3bev_B 3bew_B
3jvg_C* 2yez_B 2yf5_B 2yf6_B 2yf1_B*
Length = 99
Score = 26.1 bits (58), Expect = 1.5
Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 25 LGHKIVFICMAKGKPRPHI--TWFKDGVE 51
G K V C A G P I T KDGV
Sbjct: 17 AGTKNVLNCFAAGFHPPKISITLMKDGVP 45
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 26.8 bits (59), Expect = 1.5
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 2/70 (2%)
Query: 26 GHKIVFICMAKG-KPRP-HITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMD 83
H + F C + G PR + WFK+G EL + I S ++ +
Sbjct: 132 QHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDV 191
Query: 84 AGIYECYADN 93
C +
Sbjct: 192 HSQVICEVAH 201
>4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like
receptor; IG-like domain, extra celluar domain, domain
swappin nysgrc, structural genomics; 1.90A {Mus
musculus}
Length = 118
Score = 25.8 bits (57), Expect = 2.2
Identities = 7/47 (14%), Positives = 15/47 (31%), Gaps = 5/47 (10%)
Query: 44 TWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECY 90
+ + M + + + + + EI P + G Y C
Sbjct: 40 NMVRLEKDGSTFMEKSTEPY-----KTEDEFEIGPVNETITGHYSCI 81
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 26.3 bits (58), Expect = 2.2
Identities = 10/66 (15%), Positives = 20/66 (30%), Gaps = 10/66 (15%)
Query: 26 GHKIVFICMAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 85
G + C + +K+G + + ++ I T +G
Sbjct: 108 GGDVTLQCQTRY-GFDQFALYKEG---------DPAPYKNPERWYRASFPIITVTAAHSG 157
Query: 86 IYECYA 91
Y CY+
Sbjct: 158 TYRCYS 163
Score = 25.5 bits (56), Expect = 3.7
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 60 LHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY 95
L + + ++ + I + AG Y C N
Sbjct: 40 LEKLSSSRYQDQAVLFIPAMKRSLAGRYRCSYQNGS 75
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction
immunology, IGSF, cell SU receptor signalling,
glycosylation, membrane protein; HET: NAG; 2.90A {Homo
sapiens}
Length = 118
Score = 25.6 bits (56), Expect = 2.6
Identities = 12/84 (14%), Positives = 23/84 (27%), Gaps = 18/84 (21%)
Query: 24 VLGHKIVFICMAKGKPRP-----HITWFKDGVELYAHMYVNLHEWHYG-TDRIKSK---- 73
LG + C + +TW + G ++ Y + R++
Sbjct: 13 FLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARL 72
Query: 74 --------IEIDPATQMDAGIYEC 89
+ + D G Y C
Sbjct: 73 GAELRNASLRMFGLRVEDEGNYTC 96
>1k5n_B Beta-2-microglobulin, light chain; MHC(major histocompatibility
complex), HLA(human leukocyte A immune system; 1.09A
{Homo sapiens} SCOP: b.1.1.2 PDB: 1a9b_B 1b0g_B 1b0r_B
1bd2_B 1cg9_B 1a9e_B 1duy_B 1eey_B 1eez_B 1efx_B
1gzp_B* 1gzq_B* 1hhg_B 1hhh_B 1hhi_B 1hhj_B 1hhk_B
1i1f_B 1i1y_B 1duz_B* ...
Length = 100
Score = 25.4 bits (56), Expect = 2.7
Identities = 8/46 (17%), Positives = 15/46 (32%), Gaps = 5/46 (10%)
Query: 25 LGHKIVFICMAKG-KPRP-HITWFKDGVELYAHMYVNLH---EWHY 65
G C G P + K+G + + +L +W +
Sbjct: 18 NGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSF 63
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Length = 326
Score = 25.7 bits (57), Expect = 3.1
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKD 48
+ K+ + G P +I K+
Sbjct: 98 CIEEKVPVVTFGAGNPTKYIRELKE 122
>1iak_A MHC class II I-AK; histocompatibility antigen, peptide complex,
histocompa antigen I-AK; HET: NAG; 1.90A {Mus musculus}
SCOP: b.1.1.2 d.19.1.1 PDB: 1d9k_C* 1k2d_A* 1jl4_A
2pxy_C 1u3h_C 2z31_C 1muj_A* 1lnu_A* 3c5z_C 3c60_C
3c6l_C 3rdt_C 2iad_A 1iao_A 1es0_A 3cup_A* 3mbe_A*
1f3j_A*
Length = 199
Score = 25.9 bits (57), Expect = 3.1
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 25 LGHKIVFICMAKG-KPRP-HITWFKDGVELYAHM 56
LG IC P +ITW ++ + +
Sbjct: 103 LGQPNTLICFVDNIFPPVINITWLRNSKSVTDGV 136
>3lqz_A HLA class II histocompatibility antigen, DP alpha; MHC, immune,
disulfide bond, glycoprotein, immune respo membrane, MHC
II, transmembrane, immune system; HET: NAG NDG; 3.25A
{Homo sapiens}
Length = 181
Score = 25.5 bits (56), Expect = 3.5
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 23 SVLGHKIVFICMAKG-KPRP-HITWFKDGVELYAHM 56
LG IC P ++TW +G + +
Sbjct: 97 VELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGV 132
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN;
1.82A {Gallus gallus}
Length = 105
Score = 25.0 bits (55), Expect = 3.6
Identities = 5/15 (33%), Positives = 6/15 (40%)
Query: 76 IDPATQMDAGIYECY 90
DAG Y+C
Sbjct: 60 FAVTNLEDAGTYQCR 74
>3c5j_A HLA class II histocompatibility antigen, DR alpha; HLA, MHC class
II, glycoprotein, immune response, membrane,
transmembrane, GTP-binding, methylation; HET: NAG; 1.80A
{Homo sapiens} PDB: 1d5x_A* 1d5z_A* 1d6e_A* 1d5m_A
1fyt_A* 1hqr_A 1j8h_A* 1r5i_A 1seb_A 1zgl_A 2seb_A*
1fv1_A* 2ipk_A* 3pdo_A 3pgc_A 3pgd_A 1ymm_A* 1aqd_A
2g9h_A* 1h15_A ...
Length = 181
Score = 25.4 bits (56), Expect = 4.1
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 25 LGHKIVFICMAKGKPRPHI--TWFKDGVELYAHM 56
L V IC P + TW ++G + +
Sbjct: 99 LREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGV 132
>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2,
protein structure initiative; 1.70A {Chromobacterium
violaceum}
Length = 163
Score = 25.2 bits (55), Expect = 4.1
Identities = 7/25 (28%), Positives = 13/25 (52%), Gaps = 5/25 (20%)
Query: 27 HKIVFICMAKGKPRP-----HITWF 46
V++C+A+G+P+P I
Sbjct: 83 AHKVYLCIAQGQPKPQNEIERIALV 107
>3jts_B Beta-2-microglobulin; alpha helix, beta sheet, beta barrel,
immune response, MHC I membrane, transmembrane, disease
mutation; 2.80A {Homo sapiens}
Length = 119
Score = 25.0 bits (55), Expect = 4.2
Identities = 6/30 (20%), Positives = 8/30 (26%), Gaps = 2/30 (6%)
Query: 25 LGHKIVFICMAKGKPRPHI--TWFKDGVEL 52
G C G I K+G +
Sbjct: 37 NGKSNFLNCYVSGFHPSDIEVDLLKNGERI 66
>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like
receptor; IG-like domain, cell membrane, glycoprotein;
1.80A {Homo sapiens} PDB: 3rp1_A
Length = 106
Score = 24.7 bits (54), Expect = 4.6
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 76 IDPATQMDAGIYECY 90
ID ++ +AG Y C
Sbjct: 69 IDSVSEGNAGPYRCI 83
>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like
receptor; IG-like domain, domain swapping, collagen
receptor, structural genomics; 1.76A {Mus musculus}
Length = 102
Score = 24.6 bits (54), Expect = 4.6
Identities = 7/47 (14%), Positives = 15/47 (31%), Gaps = 5/47 (10%)
Query: 44 TWFKDGVELYAHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECY 90
+ + M + + + + + EI P + G Y C
Sbjct: 40 NMVRLEKDGSTFMEKSTEPY-----KTEDEFEIGPVNETITGHYSCI 81
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 24.9 bits (54), Expect = 4.8
Identities = 9/94 (9%), Positives = 23/94 (24%), Gaps = 11/94 (11%)
Query: 24 VLGHKIVFIC-MAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGT--DRIK-----SKIE 75
V G + + + +TWF + ++ R++ +
Sbjct: 17 VSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALY 76
Query: 76 IDPATQMDAGIYECYADNMYNVDTRTFKTDFSIT 109
I + D Y + + +
Sbjct: 77 ISKVQKEDNSTYIM---RVLKKTGNEQEWKIKLQ 107
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha,
GFT-structural genomics, PSI-2, protein structure
initiative; NMR {Bacteroides fragilis}
Length = 99
Score = 24.6 bits (54), Expect = 5.0
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 6/29 (20%)
Query: 74 IEIDP------ATQMDAGIYECYADNMYN 96
IE++P A +M I Y +MYN
Sbjct: 62 IELNPDSPALQARKMVMDILNFYNKDMYN 90
>2pnd_A V-SET and immunoglobulin domain containing 4; complement
receptor, IG-like domain, immune system; 1.00A {Mus
musculus} PDB: 2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 24.9 bits (54), Expect = 5.2
Identities = 9/83 (10%), Positives = 21/83 (25%), Gaps = 16/83 (19%)
Query: 23 SVLGHKIVFIC---MAKGKPRPHITWFKDGVELYAHMYVNLHEWHYGT-----DRIKSK- 73
+ C +G + + W +++ + R+K
Sbjct: 13 GTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRLKVSH 72
Query: 74 -------IEIDPATQMDAGIYEC 89
++I+ D Y C
Sbjct: 73 KVPGDVSLQINTLQMDDRNHYTC 95
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4;
beta barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 24.5 bits (53), Expect = 5.7
Identities = 13/82 (15%), Positives = 23/82 (28%), Gaps = 16/82 (19%)
Query: 24 VLGHKIVFICM--AKGKPRPHITWFKDGVELYAHMYVNLH-------EWHYGTDRIKSKI 74
LG + C + + R + W K L + K+
Sbjct: 9 FLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLLGKV 68
Query: 75 E-------IDPATQMDAGIYEC 89
+ I + D+G+Y C
Sbjct: 69 QFGEVSLTISNTNRGDSGVYCC 90
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 24.4 bits (53), Expect = 5.9
Identities = 4/15 (26%), Positives = 7/15 (46%)
Query: 76 IDPATQMDAGIYECY 90
+ D G+Y+C
Sbjct: 73 LHNLQIKDKGLYQCI 87
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics,
oxidoreductase, flavoprotein; HET: FMN; 1.70A
{Streptococcus pneumoniae} PDB: 2z6j_A*
Length = 332
Score = 25.0 bits (55), Expect = 7.7
Identities = 4/25 (16%), Positives = 10/25 (40%)
Query: 24 VLGHKIVFICMAKGKPRPHITWFKD 48
V+ + + G P ++ F +
Sbjct: 84 VIEEGVKVVTTGAGNPSKYMERFHE 108
>2p24_A H-2 class II histocompatibility antigen, A-U ALPH; MHC, I-AU,
immunoglobulin fold, MBP, immune system; 2.15A {Mus
musculus} SCOP: b.1.1.2 d.19.1.1
Length = 236
Score = 24.4 bits (53), Expect = 8.5
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 25 LGHKIVFICMAKG-KPRP-HITWFKDGVELYAHM 56
LG IC P +ITW ++ + +
Sbjct: 133 LGQPNTLICFVDNIFPPVINITWLRNSKSVADGV 166
>2bc4_B HLA class II histocompatibility antigen, DM beta chain; MHC class
II, immune system; HET: NDG BMA; 2.27A {Homo sapiens}
PDB: 1hdm_B 1k8i_B*
Length = 211
Score = 24.3 bits (53), Expect = 9.7
Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 25 LGHKIVFICMAKGKPRPHI--TWFKDGVELYAHM 56
++ C G + TW K+G + H
Sbjct: 109 TREPVMLACYVWGFYPAEVTITWRKNGKLVMPHS 142
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.439
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,726,140
Number of extensions: 91428
Number of successful extensions: 904
Number of sequences better than 10.0: 1
Number of HSP's gapped: 616
Number of HSP's successfully gapped: 392
Length of query: 111
Length of database: 6,701,793
Length adjustment: 75
Effective length of query: 36
Effective length of database: 4,607,718
Effective search space: 165877848
Effective search space used: 165877848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.9 bits)