BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9147
(236 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Query: 8 LKWNNYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRENPC-- 65
+ + +++S+I++ L+ RT G L DV IL +GR+ H+ +L+ACS YF+ +F
Sbjct: 13 IPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVD 72
Query: 66 QHPVVILKDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGLA 115
Q V + ++ E + A++ F Y T+ +S + + L A L+I ++
Sbjct: 73 QQNVYEIDFVSAEALTALMDFAYTATLTVSTANVGDILSAARLLEIPAVS 122
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Query: 8 LKWNNYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRENPC-- 65
+ + +++S+I++ L+ RT G L DV IL +GR+ H+ +L+ACS YF+ +F
Sbjct: 3 IPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVD 62
Query: 66 QHPVVILKDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGLA 115
Q V + ++ E + A++ F Y T+ +S + + L A L+I ++
Sbjct: 63 QQNVYEIDFVSAEALTALMDFAYTATLTVSTANVGDILSAARLLEIPAVS 112
>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|B Chain B, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|C Chain C, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|D Chain D, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
Length = 119
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 10 WNNYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRENPCQHPV 69
+ ++ +++ +L+ R G L D T + DG AHK +L+ACS YF+ +F + Q V
Sbjct: 7 FPQHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVD---QKDV 63
Query: 70 VILKDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGLAGASNMM 121
V L N + VL F+Y + +S +D L A LQ++ + A + +
Sbjct: 64 VHLDISNAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQDIITACHAL 115
>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
pdb|3M52|B Chain B, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
Length = 117
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 8 LKWNNYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRENPCQH 67
+ + ++ +++ +L+ R G L D T + DG AHK +L+ACS YF+ +F + Q
Sbjct: 3 MDFPQHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVD---QK 59
Query: 68 PVVILKDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGLAGASNMM 121
VV L N + VL F+Y + +S +D L A LQ++ + A + +
Sbjct: 60 DVVHLDISNAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQDIITACHAL 113
>pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain
Length = 138
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
Query: 5 LFCLKWNNYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRT-IFREN 63
+F + + +++N++ L+ R L DVT+L +G++ AH+ +L+ACSSYF + I +
Sbjct: 11 VFAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQT 70
Query: 64 PCQHPVVILKDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGL 114
+ V + +++ + E ++ F Y + +SK +D + E L + +
Sbjct: 71 DAELTVTLPEEVTVKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHNI 121
>pdb|2IHC|A Chain A, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|B Chain B, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|C Chain C, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|D Chain D, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
Length = 124
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 60/111 (54%), Gaps = 1/111 (0%)
Query: 5 LFCLKWNNYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRT-IFREN 63
+F + + +++N++ L+ R L DVTI +G++ AH+ +L+ACSSYF + I +
Sbjct: 4 VFAYESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQA 63
Query: 64 PCQHPVVILKDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGL 114
+ + + +++ + E ++ F Y + +SK +D K E L + +
Sbjct: 64 DGELNITLPEEVTVKGFEPLIQFAYTAKLILSKENVDEVCKCVEFLSVHNI 114
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Query: 12 NYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRENPCQHPVVI 71
N+ ++I+ L+ R G DV+++ G AH+ +L+A SSYFR +F N + VV
Sbjct: 15 NFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLF--NNSRSAVVE 72
Query: 72 L-KDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIK 112
L + + + +L F Y G + ++ D + TA LQI+
Sbjct: 73 LPAAVQPQSFQQILSFCYTGRLSMNVGDQDLLMYTAGFLQIQ 114
>pdb|3M8V|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
II
pdb|3M4T|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
I
Length = 124
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 4/105 (3%)
Query: 12 NYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRENPCQHPVVI 71
Y+ +++ L+ R G DVT++ + RK AHK ILSA S+YF +F VV
Sbjct: 15 QYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLF---SVAGQVVE 71
Query: 72 LKDINYEDIEAVLCFVYQGTVYISKS-RMDSFLKTAESLQIKGLA 115
L I E +L ++Y + +S +D +K+ + L +K +A
Sbjct: 72 LSFIRAEIFAEILNYIYSSKIVRVRSDLLDELIKSGQLLGVKFIA 116
>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|B Chain B, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|C Chain C, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|D Chain D, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|E Chain E, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|F Chain F, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
Length = 130
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 2/108 (1%)
Query: 7 CLKWNNYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFREN-PC 65
C+++ + S+++ L+ LR+ L DV I+ + AHK +L ACS F +IF + C
Sbjct: 9 CIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKC 68
Query: 66 QHPVVIL-KDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIK 112
V+ L +IN E +L F+Y + + + + + + TA LQ++
Sbjct: 69 NLSVINLDPEINPEGFCILLDFMYTSRLNLREGNIMAVMATAMYLQME 116
>pdb|3FKC|A Chain A, Crystal Structure Of Human Zinc Finger And Btb Domain
Containing 33
Length = 116
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 12 NYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRENPCQHPVVI 71
Y+ +++ L+ R G DVT++ + RK AHK ILSA S+YF +F VV
Sbjct: 13 QYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLF---SVAGQVVE 69
Query: 72 LKDINYEDIEAVLCFVYQGTVYISKS-RMDSFLKTAESLQIKGLAG 116
L I E +L ++Y + +S +D +K+ + L +K +A
Sbjct: 70 LSFIRAEIFAEILNYIYSSKIVRVRSDLLDELIKSGQLLGVKFIAA 115
>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R28|B Chain B, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R29|A Chain A, Crystal Structure Of The B-cell Lymphoma 6 (bcl6) Btb
Domain To 1.3 Angstrom
pdb|1R2B|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|1R2B|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|3BIM|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|C Chain C, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|D Chain D, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|E Chain E, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|F Chain F, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|G Chain G, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|H Chain H, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3LBZ|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
pdb|3LBZ|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
Length = 127
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 2/107 (1%)
Query: 8 LKWNNYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRENPCQH 67
+++ + S+++ L+ LR+ L DV I+ + AHK +L ACS F +IF + ++
Sbjct: 7 IQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRN 66
Query: 68 PVVILKD--INYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIK 112
VI D IN E +L F+Y + + + + + + TA LQ++
Sbjct: 67 LSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQME 113
>pdb|3OHU|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHV|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
Length = 125
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 13 YTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRENPCQHPVVIL 72
+ +NI+ L+ R L DVT++ + ++ AH+ +L+ACS YF VV L
Sbjct: 15 HCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKNDLVVSL 74
Query: 73 -KDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGL 114
+++ +L F Y + +S+ + ++ AE L++ L
Sbjct: 75 PEEVTARGFGPLLQFAYTAKLLLSRENIREVIRCAEFLRMHNL 117
>pdb|2YY9|A Chain A, Crystal Structure Of Btb Domain From Mouse Hkr3
pdb|2YY9|B Chain B, Crystal Structure Of Btb Domain From Mouse Hkr3
Length = 135
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Query: 16 NIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRENPCQHPVVILKDI 75
++ EL+ R G D T+ G AH +L+ CS +F+ I+ + V+L
Sbjct: 11 RVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT--GGSVVLPAG 68
Query: 76 NYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQI 111
E +L F Y G + ++ D L A+ L++
Sbjct: 69 FAEIFGLLLDFFYTGHLALTSGNRDQVLLAAKELRV 104
>pdb|2VPK|A Chain A, Crystal Structure Of The Btb Domain Of Human Myoneurin
Length = 116
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 51/102 (50%)
Query: 11 NNYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRENPCQHPVV 70
+++ +++ L+ R G L D TI+ + AH+ +L++ S YF I+R + +
Sbjct: 3 SHHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRSTSENNVFL 62
Query: 71 ILKDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIK 112
+ + + +L F+Y GT+ + + + A+ L+++
Sbjct: 63 DQSQVKADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVE 104
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 8/117 (6%)
Query: 20 ELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFREN--PCQHPVVILKDINY 77
EL L + D + G++ AHK IL+A S F +F + V + D+
Sbjct: 164 ELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEP 223
Query: 78 EDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGL------AGASNMMGDNESQI 128
E + ++CF+Y G D L A+ ++ L A SN+ +N ++I
Sbjct: 224 EVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEI 280
>pdb|3B84|A Chain A, Crystal Structure Of The Human Btb Domain Of The Krueppel
Related Zinc Finger Protein 3 (Hkr3)
Length = 119
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Query: 8 LKWNNYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRENPCQH 67
+ + ++ ++ EL+ R G D T+ G AH +L+ CS +F++++ +
Sbjct: 2 MSFVQHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDG--SG 59
Query: 68 PVVILKDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQI 111
V+L E +L F Y G + ++ D L A L++
Sbjct: 60 GSVVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAARELRV 103
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 8/117 (6%)
Query: 20 ELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFREN--PCQHPVVILKDINY 77
EL L + D + G++ AHK IL+A S F +F + V + D+
Sbjct: 15 ELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEP 74
Query: 78 EDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGL------AGASNMMGDNESQI 128
E + ++CF+Y G D L A+ ++ L A SN+ +N ++I
Sbjct: 75 EVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEI 131
>pdb|2PPI|A Chain A, Structure Of The Btb (Tramtrack And Bric A Brac) Domain Of
Human Gigaxonin
Length = 144
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 12 NYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRENPCQHP--- 68
+ + ++ L S R + D ++ DG +I K IL+A S Y RT NP +
Sbjct: 29 QHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGST 88
Query: 69 -VVILKDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTA 106
+ L+ I+ + +L +++ G + +++ + ++ A
Sbjct: 89 YKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAA 127
>pdb|3HVE|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 12 NYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRENP 64
+ + ++ L S R + D ++ DG +I K IL+A S Y RT NP
Sbjct: 13 QHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNP 65
>pdb|3HVE|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 12 NYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRENP 64
+ + ++ L S R + D ++ DG +I K IL+A S Y RT NP
Sbjct: 13 QHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNP 65
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|C Chain C, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|D Chain D, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
Length = 172
Score = 34.3 bits (77), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 20 ELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFREN--PCQHPVVILKDINY 77
EL L + D + G++ AHK IL+A S F F + V + D+
Sbjct: 24 ELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAXFEHEXEESKKNRVEINDVEP 83
Query: 78 EDIEAVLCFVYQG 90
E + CF+Y G
Sbjct: 84 EVFKEXXCFIYTG 96
>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
Resolution
pdb|4APF|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
Resolution
Length = 297
Score = 30.4 bits (67), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 16/107 (14%)
Query: 25 RTDGDLVDVTILC----DGRKITAHKVILSACSSYFRTIF--RENPCQHPVVILKDINYE 78
R G D+T LC GR+ AH+ +L+A + YF + + + + V ++ + E
Sbjct: 45 RRQGLFCDIT-LCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSE 103
Query: 79 ------DIEAVLCFVYQGTVYISKSRMDSFLKTAES---LQIKGLAG 116
+EAV+ ++Y G + +S + L+ A+ +++K G
Sbjct: 104 PGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIRLKEFCG 150
>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
pdb|3I3N|B Chain B, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
Length = 279
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 34/116 (29%)
Query: 25 RTDGDLVDVTILC----DGRKITAHKVILSACSSYFRTI----FREN------------- 63
R G D+T LC GR+ AH+ +L+A + YF + F E+
Sbjct: 27 RRQGLFCDIT-LCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEXRKWSSE 85
Query: 64 PCQHPVVILKDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAES---LQIKGLAG 116
P P + +EAV+ + Y G + +S + L+ A+ +++K G
Sbjct: 86 PGPEP---------DTVEAVIEYXYTGRIRVSTGSVHEVLELADRFLLIRLKEFCG 132
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 20 ELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRENPCQHPVVILKDINYED 79
ELDSL TD + +V IL G KI + I ++ + + V LK++N
Sbjct: 105 ELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVS-LKELNARP 163
Query: 80 IEAVLCFVYQGTVY 93
+E +C V + Y
Sbjct: 164 LEVFMCSVLKRQGY 177
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 20 ELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRENPCQHPVVILKDINYED 79
ELDSL TD + +V IL G KI + I ++ + + V LK++N
Sbjct: 111 ELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVS-LKELNARP 169
Query: 80 IEAVLCFVYQGTVY 93
+E +C V + Y
Sbjct: 170 LEVFMCSVLKRQGY 183
>pdb|2VQW|G Chain G, Structure Of Inhibitor-Free Hdac4 Catalytic Domain (With
Gain-Of-Function Mutation His332tyr)
Length = 413
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 25/55 (45%)
Query: 105 TAESLQIKGLAGASNMMGDNESQIQNEDSRSMDSSLVNQHDRHSLSGVGMDKDSI 159
T E LQ + + G N Q DS+ + SL + R GVG+D D+I
Sbjct: 63 TLEELQTVHSEAHTLLYGTNPLNRQKLDSKKLLGSLASVFVRLPCGGVGVDSDTI 117
>pdb|2VQJ|A Chain A, Structure Of Hdac4 Catalytic Domain Bound To A
Trifluoromethylketone Inhbitor
pdb|2VQM|A Chain A, Structure Of Hdac4 Catalytic Domain Bound To A Hydroxamic
Acid Inhbitor
Length = 413
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 25/55 (45%)
Query: 105 TAESLQIKGLAGASNMMGDNESQIQNEDSRSMDSSLVNQHDRHSLSGVGMDKDSI 159
T E LQ + + G N Q DS+ + SL + R GVG+D D+I
Sbjct: 63 TLEELQTVHSEAHTLLYGTNPLNRQKLDSKKLLGSLASVFVRLPCGGVGVDSDTI 117
>pdb|2VQO|A Chain A, Structure Of Hdac4 Catalytic Domain With A
Gain-Of-Function Muation Bound To A
Trifluoromethylketone Inhbitor
pdb|2VQO|B Chain B, Structure Of Hdac4 Catalytic Domain With A
Gain-Of-Function Muation Bound To A
Trifluoromethylketone Inhbitor
pdb|2VQV|A Chain A, Structure Of Hdac4 Catalytic Domain With A
Gain-Of-Function Mutation Bound To A Hydroxamic Acid
Inhibitor
pdb|2VQV|B Chain B, Structure Of Hdac4 Catalytic Domain With A
Gain-Of-Function Mutation Bound To A Hydroxamic Acid
Inhibitor
Length = 413
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 25/55 (45%)
Query: 105 TAESLQIKGLAGASNMMGDNESQIQNEDSRSMDSSLVNQHDRHSLSGVGMDKDSI 159
T E LQ + + G N Q DS+ + SL + R GVG+D D+I
Sbjct: 63 TLEELQTVHSEAHTLLYGTNPLNRQKLDSKKLLGSLASVFVRLPCGGVGVDSDTI 117
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 20 ELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRENPCQHPVVILKDINYED 79
ELDSL TD + +V IL G KI + I ++ + + V LK++N
Sbjct: 114 ELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVS-LKELNARP 172
Query: 80 IEAVLCFVYQGTVY 93
+E +C V + Y
Sbjct: 173 LEVFMCSVLKRQGY 186
>pdb|2VQQ|A Chain A, Structure Of Hdac4 Catalytic Domain (A Double Cysteine-To-
Alanine Mutant) Bound To A Trifluoromethylketone
Inhbitor
pdb|2VQQ|B Chain B, Structure Of Hdac4 Catalytic Domain (A Double Cysteine-To-
Alanine Mutant) Bound To A Trifluoromethylketone
Inhbitor
Length = 413
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 25/55 (45%)
Query: 105 TAESLQIKGLAGASNMMGDNESQIQNEDSRSMDSSLVNQHDRHSLSGVGMDKDSI 159
T E LQ + + G N Q DS+ + SL + R GVG+D D+I
Sbjct: 63 TLEELQTVHSEAHTLLYGTNPLNRQKLDSKKLLGSLASVFVRLPCGGVGVDSDTI 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,857,119
Number of Sequences: 62578
Number of extensions: 195993
Number of successful extensions: 369
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 339
Number of HSP's gapped (non-prelim): 32
length of query: 236
length of database: 14,973,337
effective HSP length: 96
effective length of query: 140
effective length of database: 8,965,849
effective search space: 1255218860
effective search space used: 1255218860
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)