Query psy9147
Match_columns 236
No_of_seqs 242 out of 1483
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 20:09:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9147.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9147hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441|consensus 100.0 2.2E-28 4.9E-33 232.3 12.0 179 4-182 10-215 (571)
2 PHA02713 hypothetical protein; 99.9 4.1E-27 8.9E-32 223.6 13.9 169 8-178 3-201 (557)
3 PHA02790 Kelch-like protein; P 99.9 1.7E-25 3.7E-30 209.1 9.9 157 20-178 12-196 (480)
4 PHA03098 kelch-like protein; P 99.9 3.9E-24 8.5E-29 202.0 11.6 151 27-179 6-183 (534)
5 PF00651 BTB: BTB/POZ domain; 99.9 3.7E-21 8E-26 144.6 11.1 105 21-125 1-110 (111)
6 KOG4350|consensus 99.8 8.3E-20 1.8E-24 162.2 7.7 164 15-179 29-222 (620)
7 smart00225 BTB Broad-Complex, 99.8 4.1E-18 8.9E-23 121.6 10.1 88 32-119 1-90 (90)
8 KOG2075|consensus 99.7 4E-17 8.6E-22 147.8 9.6 170 5-177 89-295 (521)
9 KOG4591|consensus 99.6 1.1E-15 2.4E-20 124.8 6.6 126 9-136 45-176 (280)
10 KOG4682|consensus 99.1 2.6E-10 5.6E-15 102.0 8.4 114 21-135 60-179 (488)
11 KOG0783|consensus 99.0 6.9E-11 1.5E-15 113.2 1.8 108 28-135 708-824 (1267)
12 KOG0783|consensus 98.7 1.4E-08 3.1E-13 97.7 6.3 91 28-118 556-681 (1267)
13 KOG2838|consensus 98.3 7.6E-07 1.6E-11 76.6 5.8 100 14-113 114-220 (401)
14 KOG2838|consensus 98.2 5.3E-06 1.1E-10 71.5 7.3 113 16-128 221-390 (401)
15 KOG2716|consensus 98.1 3.1E-05 6.6E-10 65.7 10.1 92 33-125 7-104 (230)
16 PF02214 BTB_2: BTB/POZ domain 98.0 1.4E-05 3E-10 58.4 5.5 85 33-118 1-94 (94)
17 KOG0511|consensus 97.6 3.3E-05 7.2E-10 69.3 2.7 86 31-116 150-236 (516)
18 smart00512 Skp1 Found in Skp1 97.3 0.0017 3.7E-08 48.3 8.4 78 33-111 4-104 (104)
19 PF11822 DUF3342: Domain of un 97.0 0.0011 2.3E-08 58.8 4.8 86 40-125 14-103 (317)
20 KOG3473|consensus 96.9 0.0063 1.4E-07 44.6 7.7 78 33-111 19-112 (112)
21 PF03931 Skp1_POZ: Skp1 family 96.9 0.0098 2.1E-07 40.1 7.9 55 33-88 3-58 (62)
22 KOG0511|consensus 96.5 0.0037 8.1E-08 56.4 4.4 72 40-112 301-378 (516)
23 KOG1724|consensus 96.4 0.027 5.8E-07 45.5 8.7 87 38-125 13-126 (162)
24 COG5201 SKP1 SCF ubiquitin lig 96.1 0.04 8.6E-07 42.6 7.6 94 32-126 3-122 (158)
25 KOG2714|consensus 96.1 0.026 5.7E-07 51.8 7.7 83 33-116 13-102 (465)
26 KOG1665|consensus 95.6 0.051 1.1E-06 46.0 7.2 90 31-121 9-106 (302)
27 KOG1987|consensus 95.5 0.0035 7.5E-08 55.0 0.0 92 39-130 109-205 (297)
28 KOG2715|consensus 94.1 0.19 4.2E-06 40.7 6.3 98 28-126 18-122 (210)
29 PF07707 BACK: BTB And C-termi 92.1 0.092 2E-06 38.1 1.8 68 100-178 2-73 (103)
30 smart00875 BACK BTB And C-term 90.2 0.34 7.4E-06 34.6 3.3 71 101-178 3-73 (101)
31 PF01466 Skp1: Skp1 family, di 87.2 0.93 2E-05 31.8 3.7 34 94-127 11-44 (78)
32 KOG3840|consensus 84.7 1.4 3.1E-05 39.1 4.3 81 32-112 97-185 (438)
33 KOG2723|consensus 71.5 17 0.00037 30.9 6.7 92 29-121 6-105 (221)
34 KOG1778|consensus 67.3 3.3 7.2E-05 37.1 1.7 58 33-90 29-88 (319)
35 KOG3713|consensus 50.9 1.1E+02 0.0024 29.0 8.7 88 32-120 32-134 (477)
36 PF09593 Pathogen_betaC1: Beta 40.1 26 0.00057 26.7 2.4 74 38-112 20-96 (117)
37 KOG3863|consensus 34.9 5.2 0.00011 38.7 -2.6 49 20-73 4-52 (604)
38 KOG4350|consensus 28.3 46 0.001 31.0 2.4 31 95-125 146-176 (620)
39 PHA03098 kelch-like protein; P 27.5 72 0.0016 30.1 3.7 32 94-125 105-136 (534)
40 KOG4682|consensus 26.1 37 0.00081 31.5 1.4 32 94-125 170-201 (488)
41 PHA02790 Kelch-like protein; P 22.8 1.5E+02 0.0033 27.8 4.9 31 94-124 120-150 (480)
42 PF12926 MOZART2: Mitotic-spin 21.7 1.5E+02 0.0033 21.4 3.5 28 74-104 40-67 (88)
No 1
>KOG4441|consensus
Probab=99.95 E-value=2.2e-28 Score=232.29 Aligned_cols=179 Identities=25% Similarity=0.353 Sum_probs=153.0
Q ss_pred cceeeecCcchHHHHHHHHHHHhCCCCcceEEEeCCEEEEeeHHHHhhcCHHHHHhhc--CCCCCCCeEEeCCCCHHHHH
Q psy9147 4 ELFCLKWNNYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFR--ENPCQHPVVILKDINYEDIE 81 (236)
Q Consensus 4 ~~~~~~~~~h~~~ll~~l~~~~~~~~~sDv~i~v~~~~f~aHk~ILaa~S~yF~~~f~--~~~~~~~~i~l~~v~~~~f~ 81 (236)
....+..+.|...+++.|+.+|.++.+|||++.+++++|+|||.||||+||||++||. +.|+.+.+|.+.++++.+++
T Consensus 10 ~~~~~~~~~h~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~ 89 (571)
T KOG4441|consen 10 STSEFTDPSHSKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLE 89 (571)
T ss_pred cccccccHHHHHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHH
Confidence 4567889999999999999999999999999999999999999999999999999997 48999999999999999999
Q ss_pred HHHHHHhCCccccCHHHHHHHHHHHHHhCChhHHHHHHHHhhcccCCccchhcccchh------hhchhc--------cc
Q psy9147 82 AVLCFVYQGTVYISKSRMDSFLKTAESLQIKGLAGASNMMGDNESQIQNEDSRSMDSS------LVNQHD--------RH 147 (236)
Q Consensus 82 ~~L~ylYtg~i~i~~~~v~~ll~~A~~l~i~~L~~~c~~~l~~~~~~~~~~~~~~~~~------~~~~~~--------~~ 147 (236)
.+|+|+|||++.|+.++|++|+.+|.+|||..++++|.+||...+...||......+. +...+. ..
T Consensus 90 ~ll~y~Yt~~i~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v 169 (571)
T KOG4441|consen 90 LLLDYAYTGKLEISEDNVQELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYILQHFAEV 169 (571)
T ss_pred HHHHHhhcceEEechHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999885321111 111110 00
Q ss_pred -------ccc----cCCcCCCCCCCCcchhhhHhhhhccccCcccc
Q psy9147 148 -------SLS----GVGMDKDSIDPDEESNTYNNTTTYSSTGEVED 182 (236)
Q Consensus 148 -------~l~----~~~l~~d~l~~~~~~~~~~~v~~~~~~~~~e~ 182 (236)
.|. ...+..|.+++.+|..+|+++.+|......++
T Consensus 170 ~~~eefl~L~~~~l~~ll~~d~l~v~~E~~vf~a~~~Wv~~d~~~R 215 (571)
T KOG4441|consen 170 SKTEEFLLLSLEELIGLLSSDDLNVDSEEEVFEAAMRWVKHDFEER 215 (571)
T ss_pred hccHHhhCCCHHHHHhhccccCCCcCCHHHHHHHHHHHHhcCHhhH
Confidence 000 00178999999999999999999998765443
No 2
>PHA02713 hypothetical protein; Provisional
Probab=99.94 E-value=4.1e-27 Score=223.58 Aligned_cols=169 Identities=19% Similarity=0.201 Sum_probs=140.9
Q ss_pred eecCcchHHHHHHHHHHHhCCCCcceEEEeC-CEEEEeeHHHHhhcCHHHHHhhcC--CCC-CCCeEEeCCCCHHHHHHH
Q psy9147 8 LKWNNYTSNIITELDSLRTDGDLVDVTILCD-GRKITAHKVILSACSSYFRTIFRE--NPC-QHPVVILKDINYEDIEAV 83 (236)
Q Consensus 8 ~~~~~h~~~ll~~l~~~~~~~~~sDv~i~v~-~~~f~aHk~ILaa~S~yF~~~f~~--~~~-~~~~i~l~~v~~~~f~~~ 83 (236)
+..+.|...+++.|+.||.++.+|||+|.|+ |++|+|||.||||+|+||++||.+ .++ .+..|.|.++++.+|+.+
T Consensus 3 ~~~~~h~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~l 82 (557)
T PHA02713 3 IDDIKHNRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNI 82 (557)
T ss_pred cchhhhhHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHH
Confidence 4567899999999999999999999999997 899999999999999999999965 544 467899999999999999
Q ss_pred HHHHhCCccccCHHHHHHHHHHHHHhCChhHHHHHHHHhhcccCCccchhcccc-hhhh-----ch---h----c-----
Q psy9147 84 LCFVYQGTVYISKSRMDSFLKTAESLQIKGLAGASNMMGDNESQIQNEDSRSMD-SSLV-----NQ---H----D----- 145 (236)
Q Consensus 84 L~ylYtg~i~i~~~~v~~ll~~A~~l~i~~L~~~c~~~l~~~~~~~~~~~~~~~-~~~~-----~~---~----~----- 145 (236)
|+|+|||+ ++.++|++|+.+|++||++.|+++|++||...+...||...+.. .... .. + .
T Consensus 83 l~y~Yt~~--i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~ 160 (557)
T PHA02713 83 VQYLYNRH--ISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLIT 160 (557)
T ss_pred HHHhcCCC--CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhC
Confidence 99999997 68999999999999999999999999999999999999876521 1110 00 0 0
Q ss_pred ccccccC-------CcCCCC-CCCCcchhhhHhhhhccccC
Q psy9147 146 RHSLSGV-------GMDKDS-IDPDEESNTYNNTTTYSSTG 178 (236)
Q Consensus 146 ~~~l~~~-------~l~~d~-l~~~~~~~~~~~v~~~~~~~ 178 (236)
......+ .|..|+ +++.+|..+|+++.+|..+.
T Consensus 161 ~~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~d 201 (557)
T PHA02713 161 TDAFKKTVFEILFDIISTNDNVYLYREGYKVTILLKWLEYN 201 (557)
T ss_pred ChhhhhCCHHHHHHHhccccccCCCcHHHHHHHHHHHHhcC
Confidence 0001111 166766 79999999999999999764
No 3
>PHA02790 Kelch-like protein; Provisional
Probab=99.92 E-value=1.7e-25 Score=209.15 Aligned_cols=157 Identities=14% Similarity=0.174 Sum_probs=127.8
Q ss_pred HHHHHHhCCCCcceEEEeCCEEEEeeHHHHhhcCHHHHHhhcC--CCCCCCeEEe--CCCCHHHHHHHHHHHhCCccccC
Q psy9147 20 ELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRE--NPCQHPVVIL--KDINYEDIEAVLCFVYQGTVYIS 95 (236)
Q Consensus 20 ~l~~~~~~~~~sDv~i~v~~~~f~aHk~ILaa~S~yF~~~f~~--~~~~~~~i~l--~~v~~~~f~~~L~ylYtg~i~i~ 95 (236)
.+-.++.++.+|||++.+| ++|+|||.||||+||||++||.+ .|+.. .|.+ .++++.+|+.+|+|+|||++.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~-~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~it 89 (480)
T PHA02790 12 NILALSMTKKFKTIIEAIG-GNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVYID 89 (480)
T ss_pred hHHHHHhhhhhceEEEEcC-cEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEEEe
Confidence 3445788999999998666 58999999999999999999954 66643 4554 48999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHhhcccCCccchhcccchhhhchhcc------------cccc------------c
Q psy9147 96 KSRMDSFLKTAESLQIKGLAGASNMMGDNESQIQNEDSRSMDSSLVNQHDR------------HSLS------------G 151 (236)
Q Consensus 96 ~~~v~~ll~~A~~l~i~~L~~~c~~~l~~~~~~~~~~~~~~~~~~~~~~~~------------~~l~------------~ 151 (236)
.+||++|+.+|++|||+.++++|++||...++..||...+..+........ ..+. .
T Consensus 90 ~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L~~~ 169 (480)
T PHA02790 90 SHNVVNLLRASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYLSMK 169 (480)
T ss_pred cccHHHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhCCHH
Confidence 999999999999999999999999999999999999876643332211100 0010 1
Q ss_pred CCcCCCCCCCCcchhhhHhhhhccccC
Q psy9147 152 VGMDKDSIDPDEESNTYNNTTTYSSTG 178 (236)
Q Consensus 152 ~~l~~d~l~~~~~~~~~~~v~~~~~~~ 178 (236)
..|+.|++++.+|..+|+++.+|..+.
T Consensus 170 ~lLssd~L~v~~Ee~V~eav~~Wl~~~ 196 (480)
T PHA02790 170 LILESDELNVPDEDYVVDFVIKWYMKR 196 (480)
T ss_pred HhcccccCCCccHHHHHHHHHHHHHhh
Confidence 126789999999999999999998753
No 4
>PHA03098 kelch-like protein; Provisional
Probab=99.91 E-value=3.9e-24 Score=201.95 Aligned_cols=151 Identities=20% Similarity=0.220 Sum_probs=127.0
Q ss_pred CCCCcceEEEe--CCEEEEeeHHHHhhcCHHHHHhhcCCCCCCCeEEeCCCCHHHHHHHHHHHhCCccccCHHHHHHHHH
Q psy9147 27 DGDLVDVTILC--DGRKITAHKVILSACSSYFRTIFRENPCQHPVVILKDINYEDIEAVLCFVYQGTVYISKSRMDSFLK 104 (236)
Q Consensus 27 ~~~~sDv~i~v--~~~~f~aHk~ILaa~S~yF~~~f~~~~~~~~~i~l~~v~~~~f~~~L~ylYtg~i~i~~~~v~~ll~ 104 (236)
++.+|||+|.+ +|++|+|||.||+++|+||++||..... +..|.|++ ++++|+.+|+|+|||++.++.+++.+|+.
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~-~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~~~~~ll~ 83 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK-ENEINLNI-DYDSFNEVIKYIYTGKINITSNNVKDILS 83 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC-CceEEecC-CHHHHHHHHHHhcCCceEEcHHHHHHHHH
Confidence 88999999998 9999999999999999999999976555 67899999 99999999999999999999999999999
Q ss_pred HHHHhCChhHHHHHHHHhhcccCCccchhcccchhhhchhcc---------------------ccc----ccCCcCCCCC
Q psy9147 105 TAESLQIKGLAGASNMMGDNESQIQNEDSRSMDSSLVNQHDR---------------------HSL----SGVGMDKDSI 159 (236)
Q Consensus 105 ~A~~l~i~~L~~~c~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~l----~~~~l~~d~l 159 (236)
+|++|+++.|++.|++++...+...||...+..+...+.... ..+ ....++.|.+
T Consensus 84 ~A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~~~~l~~ll~~~~L 163 (534)
T PHA03098 84 IANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLSKNELIKILSDDKL 163 (534)
T ss_pred HHHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCCHHHHHHHhcCCCc
Confidence 999999999999999999999998888765542222111100 000 0111789999
Q ss_pred CCCcchhhhHhhhhccccCc
Q psy9147 160 DPDEESNTYNNTTTYSSTGE 179 (236)
Q Consensus 160 ~~~~~~~~~~~v~~~~~~~~ 179 (236)
++.+|..+++++.+|.....
T Consensus 164 ~v~~E~~v~~av~~W~~~~~ 183 (534)
T PHA03098 164 NVSSEDVVLEIIIKWLTSKK 183 (534)
T ss_pred CcCCHHHHHHHHHHHHhcCh
Confidence 99999999999999996643
No 5
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.86 E-value=3.7e-21 Score=144.61 Aligned_cols=105 Identities=32% Similarity=0.512 Sum_probs=92.8
Q ss_pred HHHHHhCCCCcceEEEeC-CEEEEeeHHHHhhcCHHHHHhhcCC-CCCC--CeEEeCCCCHHHHHHHHHHHhCCccccC-
Q psy9147 21 LDSLRTDGDLVDVTILCD-GRKITAHKVILSACSSYFRTIFREN-PCQH--PVVILKDINYEDIEAVLCFVYQGTVYIS- 95 (236)
Q Consensus 21 l~~~~~~~~~sDv~i~v~-~~~f~aHk~ILaa~S~yF~~~f~~~-~~~~--~~i~l~~v~~~~f~~~L~ylYtg~i~i~- 95 (236)
|+++++++.+||++|.++ +++|+|||.||+++|+||+.||... .... ..|.++++++.+|..+|+|+|+|++.++
T Consensus 1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~~ 80 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEINS 80 (111)
T ss_dssp HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-
T ss_pred ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcccCCH
Confidence 578899999999999999 8999999999999999999999776 2333 3688899999999999999999999998
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHhhcc
Q psy9147 96 KSRMDSFLKTAESLQIKGLAGASNMMGDNE 125 (236)
Q Consensus 96 ~~~v~~ll~~A~~l~i~~L~~~c~~~l~~~ 125 (236)
.+++..++.+|++|+++.|++.|..++...
T Consensus 81 ~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 81 DENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 999999999999999999999999998653
No 6
>KOG4350|consensus
Probab=99.80 E-value=8.3e-20 Score=162.24 Aligned_cols=164 Identities=23% Similarity=0.305 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHhCCCCcceEEEeCCEEEEeeHHHHhhcCHHHHHhh--cCCCCCCCeEEeCCCCHHHHHHHHHHHhCCcc
Q psy9147 15 SNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIF--RENPCQHPVVILKDINYEDIEAVLCFVYQGTV 92 (236)
Q Consensus 15 ~~ll~~l~~~~~~~~~sDv~i~v~~~~f~aHk~ILaa~S~yF~~~f--~~~~~~~~~i~l~~v~~~~f~~~L~ylYtg~i 92 (236)
..+.+.+.+++.+..++||+|+|++++|+|||+||||||.|||+|+ ++.|+.+..|.|.+...++|+.+|+|||||++
T Consensus 29 ~~fS~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~ 108 (620)
T KOG4350|consen 29 NNFSQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKI 108 (620)
T ss_pred cchhHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcce
Confidence 3456788889999999999999999999999999999999999999 55899999999999999999999999999999
Q ss_pred cc---CHHHHHHHHHHHHHhCChhHHHHHHHHhhcccCCccchhcccchhhhchhcc------------cccccC-----
Q psy9147 93 YI---SKSRMDSFLKTAESLQIKGLAGASNMMGDNESQIQNEDSRSMDSSLVNQHDR------------HSLSGV----- 152 (236)
Q Consensus 93 ~i---~~~~v~~ll~~A~~l~i~~L~~~c~~~l~~~~~~~~~~~~~~~~~~~~~~~~------------~~l~~~----- 152 (236)
.+ .++...+.|.+|.+|++..|..+..+++...+..+|.++.+-.+.+++..+. ..+..+
T Consensus 109 ~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~~~sFn~ 188 (620)
T KOG4350|consen 109 DLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLEDPSFNR 188 (620)
T ss_pred ecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhcCcchhh
Confidence 86 4567788999999999999999999999999999998877665555443221 111111
Q ss_pred ----C----cCCCCCCCCcchhhhHhhhhccccCc
Q psy9147 153 ----G----MDKDSIDPDEESNTYNNTTTYSSTGE 179 (236)
Q Consensus 153 ----~----l~~d~l~~~~~~~~~~~v~~~~~~~~ 179 (236)
. +..|++ ..-|..+|.+|.+|.....
T Consensus 189 LSk~sL~e~l~RDsF-fApE~~IFlAv~~W~~~Ns 222 (620)
T KOG4350|consen 189 LSKDSLKELLARDSF-FAPELKIFLAVRSWHQNNS 222 (620)
T ss_pred hhHHHHHHHHhhhcc-cchHHHHHHHHHHHHhcCc
Confidence 0 234444 4457889999999986654
No 7
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.76 E-value=4.1e-18 Score=121.58 Aligned_cols=88 Identities=35% Similarity=0.668 Sum_probs=81.9
Q ss_pred ceEEEeCCEEEEeeHHHHhhcCHHHHHhhcCCCC--CCCeEEeCCCCHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHh
Q psy9147 32 DVTILCDGRKITAHKVILSACSSYFRTIFRENPC--QHPVVILKDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESL 109 (236)
Q Consensus 32 Dv~i~v~~~~f~aHk~ILaa~S~yF~~~f~~~~~--~~~~i~l~~v~~~~f~~~L~ylYtg~i~i~~~~v~~ll~~A~~l 109 (236)
||+|.++|+.|++||.+|+++|+||++||..... ....+.++++++.+|+.+|+|+|+|++.++..++..++.+|++|
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~ 80 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEENVEELLELADYL 80 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999976443 56789999999999999999999999999999999999999999
Q ss_pred CChhHHHHHH
Q psy9147 110 QIKGLAGASN 119 (236)
Q Consensus 110 ~i~~L~~~c~ 119 (236)
+++.|++.|+
T Consensus 81 ~~~~l~~~c~ 90 (90)
T smart00225 81 QIPGLVELCE 90 (90)
T ss_pred CcHHHHhhhC
Confidence 9999999884
No 8
>KOG2075|consensus
Probab=99.70 E-value=4e-17 Score=147.75 Aligned_cols=170 Identities=17% Similarity=0.237 Sum_probs=141.1
Q ss_pred ceeeecCcchHHHHHHHHHHHhCCCCcceEEEeCC-----EEEEeeHHHHhhcCHHHHHhhcC--CCCCCCeEEeCCCCH
Q psy9147 5 LFCLKWNNYTSNIITELDSLRTDGDLVDVTILCDG-----RKITAHKVILSACSSYFRTIFRE--NPCQHPVVILKDINY 77 (236)
Q Consensus 5 ~~~~~~~~h~~~ll~~l~~~~~~~~~sDv~i~v~~-----~~f~aHk~ILaa~S~yF~~~f~~--~~~~~~~i~l~~v~~ 77 (236)
+..+.|..--.++......+++++.++|+.|+|++ ++|+|||.|||..|..|.+||.+ .+....+|.++++.+
T Consensus 89 ~~~~nwq~~~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvep 168 (521)
T KOG2075|consen 89 RGIPNWQAQKETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEP 168 (521)
T ss_pred ccCcccccchhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcCh
Confidence 44567777788899999999999999999999973 68999999999999999999966 444567999999999
Q ss_pred HHHHHHHHHHhCCccccCHHHHHHHHHHHHHhCChhHHHHHHHHhhcccCCccchhcccchhhhchhcccccccCC----
Q psy9147 78 EDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGLAGASNMMGDNESQIQNEDSRSMDSSLVNQHDRHSLSGVG---- 153 (236)
Q Consensus 78 ~~f~~~L~ylYtg~i~i~~~~v~~ll~~A~~l~i~~L~~~c~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---- 153 (236)
.+|..+|+|||++++.+..+++..++.+|++|-++.|.+.|.+|+..++...|...+...+ ...++.+++...|
T Consensus 169 aaFl~~L~flYsdev~~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~--A~lf~ep~Li~~c~e~i 246 (521)
T KOG2075|consen 169 AAFLAFLRFLYSDEVKLAADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQR--AKLFDEPSLISICLEVI 246 (521)
T ss_pred hHhHHHHHHHhcchhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHH--HHhhcCHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998877766554331 2223333333333
Q ss_pred --------------------------cCCCCCCCCcchhhhHhhhhcccc
Q psy9147 154 --------------------------MDKDSIDPDEESNTYNNTTTYSST 177 (236)
Q Consensus 154 --------------------------l~~d~l~~~~~~~~~~~v~~~~~~ 177 (236)
+..+.+++. +...|+++.+|+..
T Consensus 247 d~~~~~al~~EGf~did~~~dt~~evl~r~~l~~~-e~~lfeA~lkw~~~ 295 (521)
T KOG2075|consen 247 DKSFEDALTPEGFCDIDSTRDTYEEVLRRDTLEAR-EFRLFEAALKWAEA 295 (521)
T ss_pred hhHHHhhhCccceeehhhHHHHHHHHHhhcccchh-HHHHHHHHHhhccC
Confidence 566777777 77888999999944
No 9
>KOG4591|consensus
Probab=99.61 E-value=1.1e-15 Score=124.85 Aligned_cols=126 Identities=15% Similarity=0.226 Sum_probs=108.6
Q ss_pred ecCcchHHHHHHHHHHHhCCCCcceEEEeC---CEEEEeeHHHHhhcCHHHHHhhcC-CCCCCCeEEeCCCCHHHHHHHH
Q psy9147 9 KWNNYTSNIITELDSLRTDGDLVDVTILCD---GRKITAHKVILSACSSYFRTIFRE-NPCQHPVVILKDINYEDIEAVL 84 (236)
Q Consensus 9 ~~~~h~~~ll~~l~~~~~~~~~sDv~i~v~---~~~f~aHk~ILaa~S~yF~~~f~~-~~~~~~~i~l~~v~~~~f~~~L 84 (236)
+-.++++.|+.-...++++++|+|++|.++ ++.++|||+||||||++++ |.+ ......+..++++++++|...+
T Consensus 45 s~dSF~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~dekse~~~~dDad~Ea~~t~i 122 (280)
T KOG4591|consen 45 SPDSFISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEKSEELDLDDADFEAFHTAI 122 (280)
T ss_pred CchhHHHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcchhhhcccccCHHHHHHhh
Confidence 345788999999999999999999999997 4789999999999999986 433 2333446778899999999999
Q ss_pred HHHhCCccccCHH--HHHHHHHHHHHhCChhHHHHHHHHhhcccCCccchhccc
Q psy9147 85 CFVYQGTVYISKS--RMDSFLKTAESLQIKGLAGASNMMGDNESQIQNEDSRSM 136 (236)
Q Consensus 85 ~ylYtg~i~i~~~--~v~~ll~~A~~l~i~~L~~~c~~~l~~~~~~~~~~~~~~ 136 (236)
+||||+++.+..+ .+.++.++|..|+++-|++.|++-+.......||...+.
T Consensus 123 RWIYTDEidfk~dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l~V~NCIk~Ye 176 (280)
T KOG4591|consen 123 RWIYTDEIDFKEDDEFLLELCELANRFQLELLKERCEKGLGALLHVDNCIKFYE 176 (280)
T ss_pred eeeeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHhhHHHHHH
Confidence 9999999998654 467799999999999999999999999999999986554
No 10
>KOG4682|consensus
Probab=99.10 E-value=2.6e-10 Score=101.97 Aligned_cols=114 Identities=21% Similarity=0.244 Sum_probs=99.5
Q ss_pred HHHHHhCCCCcceEEEeCCEEEEeeHHHHhhcCHHHHHhhcC--CCCCCCeEEe----CCCCHHHHHHHHHHHhCCcccc
Q psy9147 21 LDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRE--NPCQHPVVIL----KDINYEDIEAVLCFVYQGTVYI 94 (236)
Q Consensus 21 l~~~~~~~~~sDv~i~v~~~~f~aHk~ILaa~S~yF~~~f~~--~~~~~~~i~l----~~v~~~~f~~~L~ylYtg~i~i 94 (236)
...++.++..+||++.+-|..+++||.-|.. |+||.+||.+ .|+....|.+ +.|+..+|..++.-+|.+++.|
T Consensus 60 yq~lf~q~enSDv~l~alg~eWrlHk~yL~Q-S~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI 138 (488)
T KOG4682|consen 60 YQNLFLQGENSDVILEALGFEWRLHKPYLFQ-SEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEI 138 (488)
T ss_pred HHHHHhcCCCcceehhhccceeeeeeeeeec-cHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheec
Confidence 4567889999999999999999999999975 6899999987 5556665554 3599999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCChhHHHHHHHHhhcccCCccchhcc
Q psy9147 95 SKSRMDSFLKTAESLQIKGLAGASNMMGDNESQIQNEDSRS 135 (236)
Q Consensus 95 ~~~~v~~ll~~A~~l~i~~L~~~c~~~l~~~~~~~~~~~~~ 135 (236)
..+.|..++.+|.++++.+|.+.|.+.+...+...+.+..+
T Consensus 139 ~l~dv~gvlAaA~~lqldgl~qrC~evMie~lspkta~~yY 179 (488)
T KOG4682|consen 139 KLSDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKTACGYY 179 (488)
T ss_pred cHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhhhhHhh
Confidence 99999999999999999999999999998888777655443
No 11
>KOG0783|consensus
Probab=99.03 E-value=6.9e-11 Score=113.21 Aligned_cols=108 Identities=22% Similarity=0.265 Sum_probs=86.6
Q ss_pred CCCcceEEEe-CCEEEEeeHHHHhhcCHHHHHhhcCCCCCCCeEEeCCCC--HHHHHHHHHHHh-CCcccc-----CHHH
Q psy9147 28 GDLVDVTILC-DGRKITAHKVILSACSSYFRTIFRENPCQHPVVILKDIN--YEDIEAVLCFVY-QGTVYI-----SKSR 98 (236)
Q Consensus 28 ~~~sDv~i~v-~~~~f~aHk~ILaa~S~yF~~~f~~~~~~~~~i~l~~v~--~~~f~~~L~ylY-tg~i~i-----~~~~ 98 (236)
+..-|+.|.. +|+.|+|||++|+||+.||..||...+....-+.+.+++ .+.|..+|+|+| +.+..+ ..+-
T Consensus 708 ~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF 787 (1267)
T KOG0783|consen 708 EETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDF 787 (1267)
T ss_pred ccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhccchhhh
Confidence 5555777777 778899999999999999999997755444446666655 999999999999 555443 2345
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHhhcccCCccchhcc
Q psy9147 99 MDSFLKTAESLQIKGLAGASNMMGDNESQIQNEDSRS 135 (236)
Q Consensus 99 v~~ll~~A~~l~i~~L~~~c~~~l~~~~~~~~~~~~~ 135 (236)
+..++.+|+.|-|.+|+..|+.-+...+.+.++..+.
T Consensus 788 ~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~ll 824 (1267)
T KOG0783|consen 788 MFEILSIADQLLILELKSICEQSLLRKLNLKTLPTLL 824 (1267)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHH
Confidence 7789999999999999999999998888888776543
No 12
>KOG0783|consensus
Probab=98.74 E-value=1.4e-08 Score=97.71 Aligned_cols=91 Identities=25% Similarity=0.371 Sum_probs=67.8
Q ss_pred CCCcceEEEeCCEEEEeeHHHHhhcCHHHHHhhcC--CCC------------CCCeEEeCCCCHHHHHHHHHHHhCCccc
Q psy9147 28 GDLVDVTILCDGRKITAHKVILSACSSYFRTIFRE--NPC------------QHPVVILKDINYEDIEAVLCFVYQGTVY 93 (236)
Q Consensus 28 ~~~sDv~i~v~~~~f~aHk~ILaa~S~yF~~~f~~--~~~------------~~~~i~l~~v~~~~f~~~L~ylYtg~i~ 93 (236)
..+.||+|.||++.|+|||+||++||++|+++|.. +.+ ....|.+.+++|..|+.+|.||||+...
T Consensus 556 ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYtdt~~ 635 (1267)
T KOG0783|consen 556 DSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLHYIYTDTLL 635 (1267)
T ss_pred cccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHHHHhccccc
Confidence 45679999999999999999999999999999943 111 1224567889999999999999998432
Q ss_pred c--C------------HHH-------HHHHHHHHHHhCChhHHHHH
Q psy9147 94 I--S------------KSR-------MDSFLKTAESLQIKGLAGAS 118 (236)
Q Consensus 94 i--~------------~~~-------v~~ll~~A~~l~i~~L~~~c 118 (236)
- . .+| ...+..++++|++..|....
T Consensus 636 ~P~heDdidci~fs~~k~N~~qrtrtCeMl~~~lekf~l~el~~~~ 681 (1267)
T KOG0783|consen 636 SPWHEDDIDCIRFSPLKENLSQRTRTCEMLANLLEKFHLAELLPFS 681 (1267)
T ss_pred CCccccchhhhhccccccChhhcccHHHHHHHHHhhhhHHhhhhhh
Confidence 1 1 122 23366777778777776553
No 13
>KOG2838|consensus
Probab=98.35 E-value=7.6e-07 Score=76.56 Aligned_cols=100 Identities=13% Similarity=0.202 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHHhCCCCcceEEEeCCEEEEeeHHHHhhcCHHHHHhhcCCCCCCCe----EEeCCCCHHHHHHHHHHHhC
Q psy9147 14 TSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRENPCQHPV----VILKDINYEDIEAVLCFVYQ 89 (236)
Q Consensus 14 ~~~ll~~l~~~~~~~~~sDv~i~v~~~~f~aHk~ILaa~S~yF~~~f~~~~~~~~~----i~l~~v~~~~f~~~L~ylYt 89 (236)
..+++..+...++.....|+-|+.....|+|||++|++|+|+|+.+.+..+..... +..-++...+|+++|.|+||
T Consensus 114 a~sf~kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~t 193 (401)
T KOG2838|consen 114 ANSFLKDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLIT 193 (401)
T ss_pred hhHHHHHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHHh
Confidence 44677777777777788899999999999999999999999999988776655543 44457999999999999999
Q ss_pred CccccCH---HHHHHHHHHHHHhCChh
Q psy9147 90 GTVYISK---SRMDSFLKTAESLQIKG 113 (236)
Q Consensus 90 g~i~i~~---~~v~~ll~~A~~l~i~~ 113 (236)
|+.-... .++.-|.+++.-|+...
T Consensus 194 gEfgmEd~~fqn~diL~QL~edFG~~k 220 (401)
T KOG2838|consen 194 GEFGMEDLGFQNSDILEQLCEDFGCFK 220 (401)
T ss_pred cccchhhcCCchHHHHHHHHHhhCCch
Confidence 9976543 35666666777766543
No 14
>KOG2838|consensus
Probab=98.18 E-value=5.3e-06 Score=71.47 Aligned_cols=113 Identities=20% Similarity=0.261 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhCCCCcc-eEEEe-CC--------------EEEEeeHHHHhhcCHHHHHhhc-----CCC------CCCC
Q psy9147 16 NIITELDSLRTDGDLVD-VTILC-DG--------------RKITAHKVILSACSSYFRTIFR-----ENP------CQHP 68 (236)
Q Consensus 16 ~ll~~l~~~~~~~~~sD-v~i~v-~~--------------~~f~aHk~ILaa~S~yF~~~f~-----~~~------~~~~ 68 (236)
.|-..++.+++....-| +++.+ +| .++.|||.|.++||++||.++. +.+ ...+
T Consensus 221 kLd~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~Pk 300 (401)
T KOG2838|consen 221 KLDEDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPK 300 (401)
T ss_pred hhhHHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCc
Confidence 44455566666554444 44433 33 3689999999999999999882 122 1234
Q ss_pred eEEeCC-CCHHHH-HHHHHHHhCCccccC----------------------------HHHHHHHHHHHHHhCChhHHHHH
Q psy9147 69 VVILKD-INYEDI-EAVLCFVYQGTVYIS----------------------------KSRMDSFLKTAESLQIKGLAGAS 118 (236)
Q Consensus 69 ~i~l~~-v~~~~f-~~~L~ylYtg~i~i~----------------------------~~~v~~ll~~A~~l~i~~L~~~c 118 (236)
.|.+++ |-|.+| -++|.+|||+.+.++ .....+|+.+|-+|+++.|.++|
T Consensus 301 RIifdE~I~PkafA~i~lhclYTD~lDlSl~hkce~SigSLSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa~ 380 (401)
T KOG2838|consen 301 RIIFDELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGSLSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQAC 380 (401)
T ss_pred eeechhhhcchhhhhhhhhhheecccchhhcccCCcccccHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666665 455555 467899999876622 12356789999999999999999
Q ss_pred HHHhhcccCC
Q psy9147 119 NMMGDNESQI 128 (236)
Q Consensus 119 ~~~l~~~~~~ 128 (236)
+.........
T Consensus 381 e~Vir~acaa 390 (401)
T KOG2838|consen 381 EDVIRKACAA 390 (401)
T ss_pred HHHHHhhhhh
Confidence 9887655433
No 15
>KOG2716|consensus
Probab=98.10 E-value=3.1e-05 Score=65.73 Aligned_cols=92 Identities=16% Similarity=0.311 Sum_probs=77.3
Q ss_pred eEEEeCCEEEEeeHHHHhhcCHHHHHhhcCCC----CCCCeEEeCCCCHHHHHHHHHHHhCCccccC--HHHHHHHHHHH
Q psy9147 33 VTILCDGRKITAHKVILSACSSYFRTIFRENP----CQHPVVILKDINYEDIEAVLCFVYQGTVYIS--KSRMDSFLKTA 106 (236)
Q Consensus 33 v~i~v~~~~f~aHk~ILaa~S~yF~~~f~~~~----~~~~~i~l~~v~~~~f~~~L~ylYtg~i~i~--~~~v~~ll~~A 106 (236)
|.+-|||..|...|.-|.....+|++||...- ....+|-|+ =+|.-|..+|.||-.|.+.++ ...+.+|+.=|
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFID-RSpKHF~~ILNfmRdGdv~LPe~~kel~El~~EA 85 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFID-RSPKHFDTILNFMRDGDVDLPESEKELKELLREA 85 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEec-CChhHHHHHHHhhhcccccCccchHHHHHHHHHH
Confidence 45788999999999999999999999996532 233467775 489999999999998887764 56788999999
Q ss_pred HHhCChhHHHHHHHHhhcc
Q psy9147 107 ESLQIKGLAGASNMMGDNE 125 (236)
Q Consensus 107 ~~l~i~~L~~~c~~~l~~~ 125 (236)
.+|.+++|++.|+.-+...
T Consensus 86 ~fYlL~~Lv~~C~~~i~~~ 104 (230)
T KOG2716|consen 86 EFYLLDGLVELCQSAIARL 104 (230)
T ss_pred HHhhHHHHHHHHHHHhhhc
Confidence 9999999999999865544
No 16
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=98.00 E-value=1.4e-05 Score=58.42 Aligned_cols=85 Identities=16% Similarity=0.223 Sum_probs=65.0
Q ss_pred eEEEeCCEEEEeeHHHHh-hcCHHHHHhhcCC-----CCCCCeEEeCCCCHHHHHHHHHHHhC-CccccC-HHHHHHHHH
Q psy9147 33 VTILCDGRKITAHKVILS-ACSSYFRTIFREN-----PCQHPVVILKDINYEDIEAVLCFVYQ-GTVYIS-KSRMDSFLK 104 (236)
Q Consensus 33 v~i~v~~~~f~aHk~ILa-a~S~yF~~~f~~~-----~~~~~~i~l~~v~~~~f~~~L~ylYt-g~i~i~-~~~v~~ll~ 104 (236)
|.|-|+|+.|.+-+..|. ....+|.+|+... ......+.++ =+|..|+.+|+|+-+ |.+..+ ...+..+++
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiD-Rdp~~F~~IL~ylr~~~~l~~~~~~~~~~l~~ 79 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFID-RDPELFEYILNYLRTGGKLPIPDEICLEELLE 79 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEES-S-HHHHHHHHHHHHHTSSB---TTS-HHHHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEec-cChhhhhHHHHHHhhcCccCCCCchhHHHHHH
Confidence 678999999999999999 4456888888753 2345577774 599999999999999 677764 556788999
Q ss_pred HHHHhCChhH-HHHH
Q psy9147 105 TAESLQIKGL-AGAS 118 (236)
Q Consensus 105 ~A~~l~i~~L-~~~c 118 (236)
-|++|++..+ ++.|
T Consensus 80 Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 80 EAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHT-HHHHBHHC
T ss_pred HHHHcCCCccccCCC
Confidence 9999999998 7766
No 17
>KOG0511|consensus
Probab=97.62 E-value=3.3e-05 Score=69.25 Aligned_cols=86 Identities=20% Similarity=0.148 Sum_probs=64.9
Q ss_pred cceEEEe-CCEEEEeeHHHHhhcCHHHHHhhcCCCCCCCeEEeCCCCHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHh
Q psy9147 31 VDVTILC-DGRKITAHKVILSACSSYFRTIFRENPCQHPVVILKDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESL 109 (236)
Q Consensus 31 sDv~i~v-~~~~f~aHk~ILaa~S~yF~~~f~~~~~~~~~i~l~~v~~~~f~~~L~ylYtg~i~i~~~~v~~ll~~A~~l 109 (236)
.|+++.+ +|..|.|||+.|+|||.+|...+.+-.....+|.-..+-+.+|..+|+|+|...-.+-...-..++.+..+|
T Consensus 150 ~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~~~heI~~~~v~~~~f~~flk~lyl~~na~~~~qynallsi~~kF 229 (516)
T KOG0511|consen 150 HDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYVQGHEIEAHRVILSAFSPFLKQLYLNTNAEWKDQYNALLSIEVKF 229 (516)
T ss_pred cchHHHhhccccccHHHHHHHhhhcccCchhhhhccccCchhhhhhhHhhhhHHHHHHHHhhhhhhhhHHHHHHhhhhhc
Confidence 4899888 678899999999999999988776655556677666788999999999999773333334445566666666
Q ss_pred CChhHHH
Q psy9147 110 QIKGLAG 116 (236)
Q Consensus 110 ~i~~L~~ 116 (236)
+++.+..
T Consensus 230 ~~e~l~~ 236 (516)
T KOG0511|consen 230 SKEKLSL 236 (516)
T ss_pred cHHHhHH
Confidence 6665544
No 18
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=97.33 E-value=0.0017 Score=48.35 Aligned_cols=78 Identities=12% Similarity=0.233 Sum_probs=59.2
Q ss_pred eEEEe-CCEEEEeeHHHHhhcCHHHHHhhcCCC---CCCCeEEeCCCCHHHHHHHHHHHhCCc-----------cc----
Q psy9147 33 VTILC-DGRKITAHKVILSACSSYFRTIFRENP---CQHPVVILKDINYEDIEAVLCFVYQGT-----------VY---- 93 (236)
Q Consensus 33 v~i~v-~~~~f~aHk~ILaa~S~yF~~~f~~~~---~~~~~i~l~~v~~~~f~~~L~ylYtg~-----------i~---- 93 (236)
|++.. +|..|.+.+.+. ..|..++.|+.... .....|.+++|+...++.+++|++--. ++
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~ 82 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTWDA 82 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHcccCCCCccccccccHHHH
Confidence 44544 789999999976 58899999995421 122589999999999999999996311 11
Q ss_pred ----cCHHHHHHHHHHHHHhCC
Q psy9147 94 ----ISKSRMDSFLKTAESLQI 111 (236)
Q Consensus 94 ----i~~~~v~~ll~~A~~l~i 111 (236)
++.+.+.+|+.||++|+|
T Consensus 83 ~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 83 EFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHcCCHHHHHHHHHHHHhhCC
Confidence 455678999999999875
No 19
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=96.97 E-value=0.0011 Score=58.80 Aligned_cols=86 Identities=16% Similarity=0.205 Sum_probs=72.8
Q ss_pred EEEEeeHHHHhhcCHHHHHhhcC---CCCCCCeEEeC-CCCHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHhCChhHH
Q psy9147 40 RKITAHKVILSACSSYFRTIFRE---NPCQHPVVILK-DINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGLA 115 (236)
Q Consensus 40 ~~f~aHk~ILaa~S~yF~~~f~~---~~~~~~~i~l~-~v~~~~f~~~L~ylYtg~i~i~~~~v~~ll~~A~~l~i~~L~ 115 (236)
+.|.|.+-+|-..=.||+..+.. ......+|.|. .-+..+|+=+++|+......++.+||..|+.-|++|+|+.|+
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M~~Lv 93 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQMESLV 93 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhccHHHH
Confidence 57999999999999999999943 33333455555 467899999999999988889999999999999999999999
Q ss_pred HHHHHHhhcc
Q psy9147 116 GASNMMGDNE 125 (236)
Q Consensus 116 ~~c~~~l~~~ 125 (236)
+.|-.|...+
T Consensus 94 e~cl~y~~~~ 103 (317)
T PF11822_consen 94 EECLQYCHDH 103 (317)
T ss_pred HHHHHHHHHh
Confidence 9998886444
No 20
>KOG3473|consensus
Probab=96.94 E-value=0.0063 Score=44.64 Aligned_cols=78 Identities=18% Similarity=0.268 Sum_probs=61.6
Q ss_pred eEEEe-CCEEEEeeHHHHhhcCHHHHHhhcC----CCCCCCeEEeCCCCHHHHHHHHHHH-----hCCc------cccCH
Q psy9147 33 VTILC-DGRKITAHKVILSACSSYFRTIFRE----NPCQHPVVILKDINYEDIEAVLCFV-----YQGT------VYISK 96 (236)
Q Consensus 33 v~i~v-~~~~f~aHk~ILaa~S~yF~~~f~~----~~~~~~~i~l~~v~~~~f~~~L~yl-----Ytg~------i~i~~ 96 (236)
|.++. +|..|-.-|- +|.-|+-.|+||++ .+...++|.+++++...++.+.+|+ |++. .+|.+
T Consensus 19 VkLvS~Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ipp 97 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPP 97 (112)
T ss_pred eEeecCCCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCCCCH
Confidence 34443 6677777654 46778999999975 5666789999999999999999998 5554 44788
Q ss_pred HHHHHHHHHHHHhCC
Q psy9147 97 SRMDSFLKTAESLQI 111 (236)
Q Consensus 97 ~~v~~ll~~A~~l~i 111 (236)
+.+.+||.+|++|.+
T Consensus 98 emaleLL~aAn~Lec 112 (112)
T KOG3473|consen 98 EMALELLMAANYLEC 112 (112)
T ss_pred HHHHHHHHHhhhhcC
Confidence 999999999999863
No 21
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=96.87 E-value=0.0098 Score=40.09 Aligned_cols=55 Identities=11% Similarity=0.221 Sum_probs=43.5
Q ss_pred eEEEe-CCEEEEeeHHHHhhcCHHHHHhhcCCCCCCCeEEeCCCCHHHHHHHHHHHh
Q psy9147 33 VTILC-DGRKITAHKVILSACSSYFRTIFRENPCQHPVVILKDINYEDIEAVLCFVY 88 (236)
Q Consensus 33 v~i~v-~~~~f~aHk~ILaa~S~yF~~~f~~~~~~~~~i~l~~v~~~~f~~~L~ylY 88 (236)
|+++. +|+.|.+.+.+.. .|..++.|+.........|.+++|+...++.+++|++
T Consensus 3 v~L~SsDg~~f~V~~~~a~-~S~~i~~ml~~~~~~~~~Ipl~~v~~~~L~kViewc~ 58 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAAK-QSKTIKNMLEDLGDEDEPIPLPNVSSRILKKVIEWCE 58 (62)
T ss_dssp EEEEETTSEEEEEEHHHHT-TSHHHHHHHHCTCCCGTEEEETTS-HHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHHH-HhHHHHHHHhhhcccccccccCccCHHHHHHHHHHHH
Confidence 44544 8899999988766 7899999996643333389999999999999999996
No 22
>KOG0511|consensus
Probab=96.45 E-value=0.0037 Score=56.40 Aligned_cols=72 Identities=19% Similarity=0.225 Sum_probs=55.1
Q ss_pred EEEEeeHHHHhhcCHHHHHhhcC--CCCC-C---CeEEeCCCCHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHhCCh
Q psy9147 40 RKITAHKVILSACSSYFRTIFRE--NPCQ-H---PVVILKDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIK 112 (236)
Q Consensus 40 ~~f~aHk~ILaa~S~yF~~~f~~--~~~~-~---~~i~l~~v~~~~f~~~L~ylYtg~i~i~~~~v~~ll~~A~~l~i~ 112 (236)
.+++||..+++.+ .||+.||.+ .+++ + ....++.....+.+++++|+|+.+..+..+-..+++..|+++-+.
T Consensus 301 ~RyP~hla~i~R~-eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal~ 378 (516)
T KOG0511|consen 301 DRYPAHLARILRV-EYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLALA 378 (516)
T ss_pred ccccHHHHHHHHH-HHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhhh
Confidence 4599999999877 599999965 3432 2 244567778899999999999999888777766666666666544
No 23
>KOG1724|consensus
Probab=96.40 E-value=0.027 Score=45.53 Aligned_cols=87 Identities=16% Similarity=0.214 Sum_probs=66.2
Q ss_pred CCEEEEeeHHHHhhcCHHHHHhhcCCCCCC--CeEEeCCCCHHHHHHHHHHHhCCcc-----------------------
Q psy9147 38 DGRKITAHKVILSACSSYFRTIFRENPCQH--PVVILKDINYEDIEAVLCFVYQGTV----------------------- 92 (236)
Q Consensus 38 ~~~~f~aHk~ILaa~S~yF~~~f~~~~~~~--~~i~l~~v~~~~f~~~L~ylYtg~i----------------------- 92 (236)
+|+.|.+-..+. ..|..+.+++....-.. ..|.|++|....|..+|+|+|--.-
T Consensus 13 DG~~f~ve~~~a-~~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~ 91 (162)
T KOG1724|consen 13 DGEIFEVEEEVA-RQSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAE 91 (162)
T ss_pred CCceeehhHHHH-HHhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHH
Confidence 788888876654 45677788774322222 4799999999999999999986221
Q ss_pred --ccCHHHHHHHHHHHHHhCChhHHHHHHHHhhcc
Q psy9147 93 --YISKSRMDSFLKTAESLQIKGLAGASNMMGDNE 125 (236)
Q Consensus 93 --~i~~~~v~~ll~~A~~l~i~~L~~~c~~~l~~~ 125 (236)
.++..++.+|+.+|++|+|.+|.+.|++.....
T Consensus 92 Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~m 126 (162)
T KOG1724|consen 92 FLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANM 126 (162)
T ss_pred HHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHH
Confidence 134567999999999999999999998775544
No 24
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.04 Score=42.61 Aligned_cols=94 Identities=10% Similarity=0.100 Sum_probs=70.1
Q ss_pred ceEEEe-CCEEEEeeHHHHhhcCHHHHHhhcCCCCCCCeEEeCCCCHHHHHHHHHHHhCC--ccc---------------
Q psy9147 32 DVTILC-DGRKITAHKVILSACSSYFRTIFRENPCQHPVVILKDINYEDIEAVLCFVYQG--TVY--------------- 93 (236)
Q Consensus 32 Dv~i~v-~~~~f~aHk~ILaa~S~yF~~~f~~~~~~~~~i~l~~v~~~~f~~~L~ylYtg--~i~--------------- 93 (236)
-|.+.. +|+.|.+.+. .|-+|-..+.|+......+-.+..++|...+|..+++|+-.. ...
T Consensus 3 ~i~l~s~dge~F~vd~~-iAerSiLikN~l~d~~~~n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~D 81 (158)
T COG5201 3 MIELESIDGEIFRVDEN-IAERSILIKNMLCDSTACNYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSD 81 (158)
T ss_pred ceEEEecCCcEEEehHH-HHHHHHHHHHHhccccccCCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCcc
Confidence 344544 7888888765 578888899888654444456778899999999999999532 111
Q ss_pred --------cCHHHHHHHHHHHHHhCChhHHHHHHHHhhccc
Q psy9147 94 --------ISKSRMDSFLKTAESLQIKGLAGASNMMGDNES 126 (236)
Q Consensus 94 --------i~~~~v~~ll~~A~~l~i~~L~~~c~~~l~~~~ 126 (236)
++.+.+.++..+|++|+++.|.++|++.....+
T Consensus 82 ~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemi 122 (158)
T COG5201 82 FWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMI 122 (158)
T ss_pred HHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHH
Confidence 233557788899999999999999988865543
No 25
>KOG2714|consensus
Probab=96.06 E-value=0.026 Score=51.76 Aligned_cols=83 Identities=16% Similarity=0.204 Sum_probs=65.1
Q ss_pred eEEEeCCEEEEeeHHHHhhcC--HHHHHhhcCCCC----CCCeEEeCCCCHHHHHHHHHHHhCCccccCHHHHHHHHH-H
Q psy9147 33 VTILCDGRKITAHKVILSACS--SYFRTIFRENPC----QHPVVILKDINYEDIEAVLCFVYQGTVYISKSRMDSFLK-T 105 (236)
Q Consensus 33 v~i~v~~~~f~aHk~ILaa~S--~yF~~~f~~~~~----~~~~i~l~~v~~~~f~~~L~ylYtg~i~i~~~~v~~ll~-~ 105 (236)
|.|-|+|+.|.-.+.-|+... .+|.+++.+... ....|-| +=+|+.|..+|+|+-||++++..-....++. -
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFI-DRDPdlFaviLn~LRTg~L~~~g~~~~~llhdE 91 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFI-DRDPDLFAVILNLLRTGDLDASGVFPERLLHDE 91 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEe-cCCchHHHHHHHHHhcCCCCCccCchhhhhhhh
Confidence 677899999999999998876 688888864322 1223444 4589999999999999999996555555444 9
Q ss_pred HHHhCChhHHH
Q psy9147 106 AESLQIKGLAG 116 (236)
Q Consensus 106 A~~l~i~~L~~ 116 (236)
|.+|+|..|.+
T Consensus 92 A~fYGl~~llr 102 (465)
T KOG2714|consen 92 AMFYGLTPLLR 102 (465)
T ss_pred hhhcCcHHHHH
Confidence 99999999988
No 26
>KOG1665|consensus
Probab=95.64 E-value=0.051 Score=46.01 Aligned_cols=90 Identities=18% Similarity=0.181 Sum_probs=70.8
Q ss_pred cceEEEeCCEEEEeeHHHHhhcCH--HHHHhhcC-----CCCCCCeEEeCCCCHHHHHHHHHHHhCCcccc-CHHHHHHH
Q psy9147 31 VDVTILCDGRKITAHKVILSACSS--YFRTIFRE-----NPCQHPVVILKDINYEDIEAVLCFVYQGTVYI-SKSRMDSF 102 (236)
Q Consensus 31 sDv~i~v~~~~f~aHk~ILaa~S~--yF~~~f~~-----~~~~~~~i~l~~v~~~~f~~~L~ylYtg~i~i-~~~~v~~l 102 (236)
+-|.+-++|+.|..-.--|..+-| .+.+||.. ++..+..+.| +-+|.-|+.+|.|+-.|+++. +.-++..+
T Consensus 9 ~~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lI-DRsp~yFepIlNyLr~Gq~~~~s~i~~lgv 87 (302)
T KOG1665|consen 9 SMVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLI-DRSPKYFEPILNYLRDGQIPSLSDIDCLGV 87 (302)
T ss_pred hhheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEE-ccCchhhHHHHHHHhcCceeecCCccHHHH
Confidence 357788899999988777777643 56788854 3334445555 458999999999999999986 45678999
Q ss_pred HHHHHHhCChhHHHHHHHH
Q psy9147 103 LKTAESLQIKGLAGASNMM 121 (236)
Q Consensus 103 l~~A~~l~i~~L~~~c~~~ 121 (236)
++.|++|+|-.|++..+.-
T Consensus 88 LeeArff~i~sL~~hle~~ 106 (302)
T KOG1665|consen 88 LEEARFFQILSLKDHLEDS 106 (302)
T ss_pred HHHhhHHhhHhHHhHHhhh
Confidence 9999999999999988773
No 27
>KOG1987|consensus
Probab=95.55 E-value=0.0035 Score=55.01 Aligned_cols=92 Identities=21% Similarity=0.079 Sum_probs=73.2
Q ss_pred CEEEEeeHHHHhhcCHHHHHhhcC--CCCCCCeEEeCCCCHHHHHHHHHHHhCCccccCHHHHH---HHHHHHHHhCChh
Q psy9147 39 GRKITAHKVILSACSSYFRTIFRE--NPCQHPVVILKDINYEDIEAVLCFVYQGTVYISKSRMD---SFLKTAESLQIKG 113 (236)
Q Consensus 39 ~~~f~aHk~ILaa~S~yF~~~f~~--~~~~~~~i~l~~v~~~~f~~~L~ylYtg~i~i~~~~v~---~ll~~A~~l~i~~ 113 (236)
+..+.+|+.+++++++.|+.|+.. .......+.+.+..+..++.+..|.|+..-.-..+.+. .++.++..++...
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~ 188 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRH 188 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccchHHHHHhhcCChhhhhccccccHH
Confidence 456999999999999999999964 22333445777899999999999999976555555554 6788999999999
Q ss_pred HHHHHHHHhhcccCCcc
Q psy9147 114 LAGASNMMGDNESQIQN 130 (236)
Q Consensus 114 L~~~c~~~l~~~~~~~~ 130 (236)
++..|...+...+...+
T Consensus 189 lk~~~~~~l~~~~~~~~ 205 (297)
T KOG1987|consen 189 LKLACMPVLLSLIETLN 205 (297)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999999887655444
No 28
>KOG2715|consensus
Probab=94.06 E-value=0.19 Score=40.69 Aligned_cols=98 Identities=16% Similarity=0.135 Sum_probs=75.8
Q ss_pred CCCcceEEEeCCEEEEeeHHHHhhcCHHHHHhhcC----CCC---CCCeEEeCCCCHHHHHHHHHHHhCCccccCHHHHH
Q psy9147 28 GDLVDVTILCDGRKITAHKVILSACSSYFRTIFRE----NPC---QHPVVILKDINYEDIEAVLCFVYQGTVYISKSRMD 100 (236)
Q Consensus 28 ~~~sDv~i~v~~~~f~aHk~ILaa~S~yF~~~f~~----~~~---~~~~i~l~~v~~~~f~~~L~ylYtg~i~i~~~~v~ 100 (236)
+...-|.+-|||..|-.-|.-|..-+.-|...|-. .++ ......| +=+|..|..+|.|+-.|++.++.-.-.
T Consensus 18 g~s~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlI-DRDP~~FgpvLNylRhgklvl~~l~ee 96 (210)
T KOG2715|consen 18 GVSLWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLI-DRDPFYFGPVLNYLRHGKLVLNKLSEE 96 (210)
T ss_pred CceEEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEe-ccCcchHHHHHHHHhcchhhhhhhhhh
Confidence 44456788889999999999999999788777732 111 1223333 558999999999999999999884445
Q ss_pred HHHHHHHHhCChhHHHHHHHHhhccc
Q psy9147 101 SFLKTAESLQIKGLAGASNMMGDNES 126 (236)
Q Consensus 101 ~ll~~A~~l~i~~L~~~c~~~l~~~~ 126 (236)
.+|.-|++|.++.|..+..+.+..+.
T Consensus 97 GvL~EAefyn~~~li~likd~i~dRd 122 (210)
T KOG2715|consen 97 GVLEEAEFYNDPSLIQLIKDRIQDRD 122 (210)
T ss_pred ccchhhhccCChHHHHHHHHHHHHHh
Confidence 59999999999999999887766553
No 29
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=92.08 E-value=0.092 Score=38.09 Aligned_cols=68 Identities=13% Similarity=0.125 Sum_probs=44.8
Q ss_pred HHHHHHHHHhCChhHHHHHHHHhhcccCCccchhcccchhhhchhccccc----ccCCcCCCCCCCCcchhhhHhhhhcc
Q psy9147 100 DSFLKTAESLQIKGLAGASNMMGDNESQIQNEDSRSMDSSLVNQHDRHSL----SGVGMDKDSIDPDEESNTYNNTTTYS 175 (236)
Q Consensus 100 ~~ll~~A~~l~i~~L~~~c~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~l~~d~l~~~~~~~~~~~v~~~~ 175 (236)
.+++..|..|++..|.+.|..++..+-. .+........+ ....+..+++++.+|..+++++.+|.
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~nf~-----------~v~~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~ 70 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAKNFN-----------EVSKSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWL 70 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTHH-----------HHTTSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHH
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHHHHH-----------HHccchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHH
Confidence 4688999999999999999999876621 11111111111 12236778899999999999999999
Q ss_pred ccC
Q psy9147 176 STG 178 (236)
Q Consensus 176 ~~~ 178 (236)
...
T Consensus 71 ~~~ 73 (103)
T PF07707_consen 71 KHN 73 (103)
T ss_dssp HCT
T ss_pred HhC
Confidence 553
No 30
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=90.25 E-value=0.34 Score=34.60 Aligned_cols=71 Identities=7% Similarity=0.013 Sum_probs=45.7
Q ss_pred HHHHHHHHhCChhHHHHHHHHhhcccCCccchhcccchhhhchhcccccccCCcCCCCCCCCcchhhhHhhhhccccC
Q psy9147 101 SFLKTAESLQIKGLAGASNMMGDNESQIQNEDSRSMDSSLVNQHDRHSLSGVGMDKDSIDPDEESNTYNNTTTYSSTG 178 (236)
Q Consensus 101 ~ll~~A~~l~i~~L~~~c~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~d~l~~~~~~~~~~~v~~~~~~~ 178 (236)
.++.+|+.|+...|.+.|..++..+... .. . ...... - ........+..+++++.+|..++.++.+|....
T Consensus 3 ~i~~~a~~~~~~~L~~~~~~~i~~nf~~--~~-~--~~~f~~-L-~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~~ 73 (101)
T smart00875 3 GIRRFAELYGLEELLEKALRFILKNFLE--VA-Q--SEEFLE-L-SLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKHD 73 (101)
T ss_pred hHHHHHHHhChHHHHHHHHHHHHHHHHH--Hh-c--CcHHhc-C-CHHHHHHHhCcccCCCCCHHHHHHHHHHHHHCC
Confidence 4677899999999999999987655110 00 0 000000 0 011122237788899888999999999999543
No 31
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=87.19 E-value=0.93 Score=31.82 Aligned_cols=34 Identities=24% Similarity=0.263 Sum_probs=27.3
Q ss_pred cCHHHHHHHHHHHHHhCChhHHHHHHHHhhcccC
Q psy9147 94 ISKSRMDSFLKTAESLQIKGLAGASNMMGDNESQ 127 (236)
Q Consensus 94 i~~~~v~~ll~~A~~l~i~~L~~~c~~~l~~~~~ 127 (236)
++...+.+|+.+|.+|+|..|.+.|...+...+.
T Consensus 11 ~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~ 44 (78)
T PF01466_consen 11 VDNDELFDLLNAANYLDIKGLLDLCCKYIANMIK 44 (78)
T ss_dssp S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhc
Confidence 4667899999999999999999999888765543
No 32
>KOG3840|consensus
Probab=84.73 E-value=1.4 Score=39.06 Aligned_cols=81 Identities=14% Similarity=0.256 Sum_probs=57.9
Q ss_pred ceEEEeCCEEEEeeHHHHhhcCH-HHHHhhcC-----CCCCCCeEEeC-CCCHHHHHHHHHHHhCCccccC-HHHHHHHH
Q psy9147 32 DVTILCDGRKITAHKVILSACSS-YFRTIFRE-----NPCQHPVVILK-DINYEDIEAVLCFVYQGTVYIS-KSRMDSFL 103 (236)
Q Consensus 32 Dv~i~v~~~~f~aHk~ILaa~S~-yF~~~f~~-----~~~~~~~i~l~-~v~~~~f~~~L~ylYtg~i~i~-~~~v~~ll 103 (236)
-++..+++.+|-..+.+|.+.-. ..-.||.+ .+....+..+. +|+..+|+++|+|.-+|.+.-. .-.|.+|-
T Consensus 97 ~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP~~vSvpELr 176 (438)
T KOG3840|consen 97 KVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCPSSVSVSELR 176 (438)
T ss_pred ceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCCCCCchHHHH
Confidence 47788899999999999988743 23455643 33344466654 6999999999999999987653 33566677
Q ss_pred HHHHHhCCh
Q psy9147 104 KTAESLQIK 112 (236)
Q Consensus 104 ~~A~~l~i~ 112 (236)
.++++|.|+
T Consensus 177 EACDYLlip 185 (438)
T KOG3840|consen 177 EACDYLLVP 185 (438)
T ss_pred hhcceEEee
Confidence 777777654
No 33
>KOG2723|consensus
Probab=71.50 E-value=17 Score=30.86 Aligned_cols=92 Identities=12% Similarity=0.099 Sum_probs=58.1
Q ss_pred CCcc-eEEEeCCEEEEeeHH-HHhhcCHHHHHhhcCCC----CCCCeEEeCCCCHHHHHHHHHHHhCCccccCH--HHHH
Q psy9147 29 DLVD-VTILCDGRKITAHKV-ILSACSSYFRTIFRENP----CQHPVVILKDINYEDIEAVLCFVYQGTVYISK--SRMD 100 (236)
Q Consensus 29 ~~sD-v~i~v~~~~f~aHk~-ILaa~S~yF~~~f~~~~----~~~~~i~l~~v~~~~f~~~L~ylYtg~i~i~~--~~v~ 100 (236)
.+.| |.+-|+|..|..-.. +++-.-.....||+... .......|+ =+-..|+.+|+|+-|-.+.+++ .++.
T Consensus 6 ~~~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fID-RDG~lFRyvL~~LRt~~l~lpe~f~e~~ 84 (221)
T KOG2723|consen 6 EYPDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFID-RDGFLFRYVLDYLRTKALLLPEDFAEVE 84 (221)
T ss_pred ccCCceeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEEc-CCcchHHHHHHHhcccccccchhhhhHH
Confidence 3445 445567765554333 33333345567776411 112233332 3567899999999996666655 6788
Q ss_pred HHHHHHHHhCChhHHHHHHHH
Q psy9147 101 SFLKTAESLQIKGLAGASNMM 121 (236)
Q Consensus 101 ~ll~~A~~l~i~~L~~~c~~~ 121 (236)
.|...|++|+++.+...+.+-
T Consensus 85 ~L~rEA~f~~l~~~~~~l~~~ 105 (221)
T KOG2723|consen 85 RLVREAEFFQLEAPVTYLLNS 105 (221)
T ss_pred HHHHHHHHHccccHHHHHhcc
Confidence 899999999999888765443
No 34
>KOG1778|consensus
Probab=67.35 E-value=3.3 Score=37.09 Aligned_cols=58 Identities=14% Similarity=0.262 Sum_probs=42.9
Q ss_pred eEEEeCCEEEEeeHHHHhhcCHHHHHhhcCC--CCCCCeEEeCCCCHHHHHHHHHHHhCC
Q psy9147 33 VTILCDGRKITAHKVILSACSSYFRTIFREN--PCQHPVVILKDINYEDIEAVLCFVYQG 90 (236)
Q Consensus 33 v~i~v~~~~f~aHk~ILaa~S~yF~~~f~~~--~~~~~~i~l~~v~~~~f~~~L~ylYtg 90 (236)
.++......+.+|+.+|+..|+.|..+.... ......+.+.+++...+..+.+++|..
T Consensus 29 ~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~ 88 (319)
T KOG1778|consen 29 EIVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKILGVPCKAVNVFIRFLYSS 88 (319)
T ss_pred hhhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceeecccccccchhhhhhccc
Confidence 3344456789999999999999998776432 223345566678888899999999886
No 35
>KOG3713|consensus
Probab=50.92 E-value=1.1e+02 Score=28.98 Aligned_cols=88 Identities=11% Similarity=-0.009 Sum_probs=55.1
Q ss_pred ceEEEeCCEEEEeeHHHHhhcCHHHHHhhcC-------------CCCCCCeEEeCCCCHHHHHHHHHHHhCCccccCHHH
Q psy9147 32 DVTILCDGRKITAHKVILSACSSYFRTIFRE-------------NPCQHPVVILKDINYEDIEAVLCFVYQGTVYISKSR 98 (236)
Q Consensus 32 Dv~i~v~~~~f~aHk~ILaa~S~yF~~~f~~-------------~~~~~~~i~l~~v~~~~f~~~L~ylYtg~i~i~~~~ 98 (236)
-|++-|||.++..-+..|...-.-.-..|.. -....++..++ =+|.+|..+|+|.+||++....+-
T Consensus 32 ~i~lNVGG~r~~l~~~tL~~~P~TRL~rL~~~~~~~~~l~~cDdyd~~~~EyfFD-R~P~~F~~Vl~fYrtGkLH~p~~v 110 (477)
T KOG3713|consen 32 RVRLNVGGTRHELYWSTLKRFPLTRLGRLADCNSHEERLELCDDYDPVTNEYFFD-RHPGAFAYVLNFYRTGKLHVPADV 110 (477)
T ss_pred EEEEeeCCeeEEehHHHHhhCchhHHHHHHhcccchhhhhhccccCcccCeeeec-cChHHHHHHHHHHhcCeecccccc
Confidence 4777789999988887777632111112211 01123344443 489999999999999999876654
Q ss_pred -HHHHHHHHHHhCChhH-HHHHHH
Q psy9147 99 -MDSFLKTAESLQIKGL-AGASNM 120 (236)
Q Consensus 99 -v~~ll~~A~~l~i~~L-~~~c~~ 120 (236)
.....+=-++++|+.. ++.|+.
T Consensus 111 C~~~F~eEL~yWgI~~~~le~CC~ 134 (477)
T KOG3713|consen 111 CPLSFEEELDYWGIDEAHLESCCW 134 (477)
T ss_pred chHHHHHHHHHhCCChhhhhHHhH
Confidence 3335556677887765 334443
No 36
>PF09593 Pathogen_betaC1: Beta-satellite pathogenicity beta C1 protein; InterPro: IPR018583 Cotton leaf-curl disease - CLCuD - is of major economic importance in cotton-growing areas of the far-east. The infectious agent appears to be a single-stranded DNA molecule of approx 1350 nucleotides in length, which, when inoculated with the Begomovirus into cotton, induces symptoms typical of CLCuD. This molecule requires the Begomovirus for replication and encapsidation []. DNA beta encodes a single protein, betaC1. The intracellular distribution of betaC1 is consistent with the hypothesis that it has a role in transporting the DNA A of Begomovirus from the nuclear site of replication to the plasmodesmatal exit sites of the infected cell. The DNA beta-encoded protein, betaC1, is the determinant of both pathogenicity and suppression of gene silencing [].
Probab=40.12 E-value=26 Score=26.71 Aligned_cols=74 Identities=19% Similarity=0.209 Sum_probs=44.2
Q ss_pred CCEEEEeeHHHHhhcCHHHHHhhcCCCCCCCeEEeC-C--CCHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHhCCh
Q psy9147 38 DGRKITAHKVILSACSSYFRTIFRENPCQHPVVILK-D--INYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIK 112 (236)
Q Consensus 38 ~~~~f~aHk~ILaa~S~yF~~~f~~~~~~~~~i~l~-~--v~~~~f~~~L~ylYtg~i~i~~~~v~~ll~~A~~l~i~ 112 (236)
++.++.+|--+++.+||...+.=-.-+=.-..+.+| + --.+.....|+++|.|.- +.+-...++..+-+.+.++
T Consensus 20 ~~~~i~V~i~l~ST~sP~l~k~~f~IpY~~~~ii~PFDFNglEe~I~~~l~~mY~~s~-~~efk~EDmve~IDIlmme 96 (117)
T PF09593_consen 20 EDMSIFVHIQLFSTRSPALIKKKFIIPYTHEGIIPPFDFNGLEEGIKNTLKIMYKDSK-IEEFKQEDMVEAIDILMME 96 (117)
T ss_pred CCCEEEEEEEEEECCChHHheEEEEEeccCCCeECCcccCcHHHHHHHHHHHHhCCCC-cccccHHHHHhhhheeeec
Confidence 567899999999999999854321112111223322 2 247888999999998743 3332334444444444443
No 37
>KOG3863|consensus
Probab=34.85 E-value=5.2 Score=38.69 Aligned_cols=49 Identities=27% Similarity=0.415 Sum_probs=36.6
Q ss_pred HHHHHHhCCCCcceEEEeCCEEEEeeHHHHhhcCHHHHHhhcCCCCCCCeEEeC
Q psy9147 20 ELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRENPCQHPVVILK 73 (236)
Q Consensus 20 ~l~~~~~~~~~sDv~i~v~~~~f~aHk~ILaa~S~yF~~~f~~~~~~~~~i~l~ 73 (236)
.++..|....+||+++.+.++.|.+|+ ++.||..-..+.....-+|.++
T Consensus 4 ~~~~qr~~~~~~~~~~~~~~~~f~~~~-----~~e~~~~~~~G~~~~dl~i~~P 52 (604)
T KOG3863|consen 4 SLNDQRKKDVLCDVTAFVERQGFRAHR-----CSEYFTSRIVGQADGDLNISLP 52 (604)
T ss_pred cccccccccccchhHHHHhccccccee-----ccchhhhhhcccccccccccCc
Confidence 456678888999999999999999999 8999976664433333344443
No 38
>KOG4350|consensus
Probab=28.34 E-value=46 Score=31.05 Aligned_cols=31 Identities=16% Similarity=0.158 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHHhCChhHHHHHHHHhhcc
Q psy9147 95 SKSRMDSFLKTAESLQIKGLAGASNMMGDNE 125 (236)
Q Consensus 95 ~~~~v~~ll~~A~~l~i~~L~~~c~~~l~~~ 125 (236)
..+||..++.+|.+|++++|.+.|..|...+
T Consensus 146 ~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrn 176 (620)
T KOG4350|consen 146 KNENVCMIFDAAYLYQLTDLTDYCMMFMDRN 176 (620)
T ss_pred cccceeeeeeHHHHhcchHHHHHHHHHHhcC
Confidence 4467888999999999999999999998765
No 39
>PHA03098 kelch-like protein; Provisional
Probab=27.49 E-value=72 Score=30.14 Aligned_cols=32 Identities=16% Similarity=-0.001 Sum_probs=28.4
Q ss_pred cCHHHHHHHHHHHHHhCChhHHHHHHHHhhcc
Q psy9147 94 ISKSRMDSFLKTAESLQIKGLAGASNMMGDNE 125 (236)
Q Consensus 94 i~~~~v~~ll~~A~~l~i~~L~~~c~~~l~~~ 125 (236)
++.+|+..++.+|..+.+..|.+.|..++..+
T Consensus 105 l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~n 136 (534)
T PHA03098 105 IDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNN 136 (534)
T ss_pred CCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 67889999999999999999999998886543
No 40
>KOG4682|consensus
Probab=26.14 E-value=37 Score=31.55 Aligned_cols=32 Identities=9% Similarity=0.012 Sum_probs=29.7
Q ss_pred cCHHHHHHHHHHHHHhCChhHHHHHHHHhhcc
Q psy9147 94 ISKSRMDSFLKTAESLQIKGLAGASNMMGDNE 125 (236)
Q Consensus 94 i~~~~v~~ll~~A~~l~i~~L~~~c~~~l~~~ 125 (236)
++++++...+.+|.+|+++.+++.|.+++..+
T Consensus 170 lspkta~~yYea~ckYgle~vk~kc~ewl~~n 201 (488)
T KOG4682|consen 170 LSPKTACGYYEAACKYGLESVKKKCLEWLLNN 201 (488)
T ss_pred cChhhhhHhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 67899999999999999999999999998766
No 41
>PHA02790 Kelch-like protein; Provisional
Probab=22.83 E-value=1.5e+02 Score=27.84 Aligned_cols=31 Identities=6% Similarity=-0.070 Sum_probs=27.1
Q ss_pred cCHHHHHHHHHHHHHhCChhHHHHHHHHhhc
Q psy9147 94 ISKSRMDSFLKTAESLQIKGLAGASNMMGDN 124 (236)
Q Consensus 94 i~~~~v~~ll~~A~~l~i~~L~~~c~~~l~~ 124 (236)
++.+|...++.+|+.|++.+|.+.+..|+..
T Consensus 120 l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~ 150 (480)
T PHA02790 120 FRKEYCVECYMMGIEYGLSNLLCHTKDFIAK 150 (480)
T ss_pred CCcchHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 7889999999999999999999998766543
No 42
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=21.68 E-value=1.5e+02 Score=21.41 Aligned_cols=28 Identities=18% Similarity=0.200 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHHHHhCCccccCHHHHHHHHH
Q psy9147 74 DINYEDIEAVLCFVYQGTVYISKSRMDSFLK 104 (236)
Q Consensus 74 ~v~~~~f~~~L~ylYtg~i~i~~~~v~~ll~ 104 (236)
.++|++|+.+|+.+-. .+.+..+..+|+
T Consensus 40 ~~dp~VFriildLL~~---nVsP~AI~qmLK 67 (88)
T PF12926_consen 40 PMDPEVFRIILDLLRL---NVSPDAIFQMLK 67 (88)
T ss_pred CcChHHHHHHHHHHHc---CCCHHHHHHHHH
Confidence 3689999999998853 455666666544
Done!