RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9147
(236 letters)
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3,
structural genomics, NPPSFA; 2.60A {Mus musculus}
Length = 135
Score = 98.5 bits (246), Expect = 2e-26
Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 8/126 (6%)
Query: 11 NNYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRENPCQHPVV 70
+ ++ ++ EL+ R G D T+ G AH +L+ CS +F+ I+ + V
Sbjct: 6 SGHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDG--TGGSV 63
Query: 71 ILKDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGLAGA------SNMMGDN 124
+L E +L F Y G + ++ D L A+ L++ +G
Sbjct: 64 VLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAAKELRVPEAVELCQSFQPQTSVGQA 123
Query: 125 ESQIQN 130
+S +
Sbjct: 124 QSGLGQ 129
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK,
proto oncogene, transcription F transcription; 2.00A
{Homo sapiens} PDB: 2nn2_A
Length = 120
Score = 96.5 bits (241), Expect = 7e-26
Identities = 33/115 (28%), Positives = 62/115 (53%), Gaps = 6/115 (5%)
Query: 7 CLKWNNYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIF----RE 62
+ + +++S+I++ L+ RT G L DV IL +GR+ H+ +L+ACS YF+ +F
Sbjct: 2 GIPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVV 61
Query: 63 NPCQHPVVILKDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGLAGA 117
Q V + ++ E + A++ F Y T+ +S + + L A L+I ++
Sbjct: 62 --DQQNVYEIDFVSAEALTALMDFAYTATLTVSTANVGDILSAARLLEIPAVSHV 114
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain,
phosphoprotein, repressor, transcri transcription
regulation; 2.10A {Homo sapiens}
Length = 129
Score = 96.2 bits (240), Expect = 1e-25
Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 1/113 (0%)
Query: 2 ANELFCLKWNNYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFR 61
+ + ++ N+ ++I+ L+ R G DV+++ G AH+ +L+A SSYFR +F
Sbjct: 5 SAQTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFN 64
Query: 62 ENPCQHPVVILKDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGL 114
+ V + + + + +L F Y G + ++ D + TA LQI+ +
Sbjct: 65 NSR-SAVVELPAAVQPQSFQQILSFCYTGRLSMNVGDQDLLMYTAGFLQIQEI 116
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC
domain,transcription factor, protein-PROT interaction;
2.44A {Homo sapiens}
Length = 124
Score = 95.7 bits (239), Expect = 1e-25
Identities = 27/110 (24%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Query: 9 KWNNYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRENP-CQH 67
+ + +++N++ L+ R L DVTI +G++ AH+ +L+ACSSYF + +
Sbjct: 8 ESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGEL 67
Query: 68 PVVILKDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGLAGA 117
+ + +++ + E ++ F Y + +SK +D K E L + + +
Sbjct: 68 NITLPEEVTVKGFEPLIQFAYTAKLILSKENVDEVCKCVEFLSVHNIEES 117
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding,
alternative splicing, zinc, nucleus, BTB domain,
zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Length = 116
Score = 95.3 bits (238), Expect = 2e-25
Identities = 22/107 (20%), Positives = 52/107 (48%)
Query: 11 NNYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRENPCQHPVV 70
+++ +++ L+ R G L D TI+ + AH+ +L++ S YF I+R + +
Sbjct: 3 SHHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRSTSENNVFL 62
Query: 71 ILKDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGLAGA 117
+ + + +L F+Y GT+ + + + A+ L+++ +
Sbjct: 63 DQSQVKADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVEEVVTK 109
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo
sapiens} PDB: 3ohv_A
Length = 125
Score = 95.4 bits (238), Expect = 2e-25
Identities = 25/118 (21%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 1 MANELFCLKWNNYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIF 60
+ + ++ + + +NI+ L+ R L DVT++ + ++ AH+ +L+ACS YF
Sbjct: 3 LGSPMYVYESTVHCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQAL 62
Query: 61 RENPCQHP-VVILKDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGLAGA 117
V + +++ +L F Y + +S+ + ++ AE L++ L +
Sbjct: 63 VGQTKNDLVVSLPEEVTARGFGPLLQFAYTAKLLLSRENIREVIRCAEFLRMHNLEDS 120
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo
sapiens} PDB: 3m52_A
Length = 119
Score = 94.6 bits (236), Expect = 3e-25
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 12 NYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRENPCQHPVVI 71
++ +++ +L+ R G L D T + DG AHK +L+ACS YF+ +F + Q VV
Sbjct: 9 QHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVD---QKDVVH 65
Query: 72 LKDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGLAGA 117
L N + VL F+Y + +S +D L A LQ++ + A
Sbjct: 66 LDISNAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQDIITA 111
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond,
activator, DNA-binding, nucleus, phosphorylation,
repressor; 2.50A {Mus musculus}
Length = 138
Score = 94.3 bits (235), Expect = 8e-25
Identities = 28/116 (24%), Positives = 61/116 (52%), Gaps = 1/116 (0%)
Query: 3 NELFCLKWNNYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRE 62
+ +F + + +++N++ L+ R L DVT+L +G++ AH+ +L+ACSSYF +
Sbjct: 9 SAVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVG 68
Query: 63 NP-CQHPVVILKDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGLAGA 117
+ V + +++ + E ++ F Y + +SK +D + E L + + +
Sbjct: 69 QTDAELTVTLPEEVTVKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHNIEES 124
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote;
protein-protein interaction domain, transcriptional
represso finger protein; 1.90A {Homo sapiens} SCOP:
d.42.1.1 PDB: 1cs3_A
Length = 121
Score = 92.7 bits (231), Expect = 2e-24
Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 11 NNYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRENPCQHPVV 70
++ + ++ + + +R G L DV I+ D ++ AH+ +L+ S F +F N
Sbjct: 9 PSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN---SQHY 65
Query: 71 ILKDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQI 111
L ++ + + +L + Y T+ +D L AE L+I
Sbjct: 66 TLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEI 106
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression,
transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB:
1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Length = 127
Score = 93.0 bits (232), Expect = 2e-24
Identities = 28/114 (24%), Positives = 56/114 (49%), Gaps = 2/114 (1%)
Query: 6 FCLKWNNYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRENP- 64
+++ + S+++ L+ LR+ L DV I+ + AHK +L ACS F +IF +
Sbjct: 5 SQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLK 64
Query: 65 -CQHPVVILKDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGLAGA 117
+ + +IN E +L F+Y + + + + + + TA LQ++ +
Sbjct: 65 RNLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDT 118
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related
zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene;
1.74A {Homo sapiens}
Length = 119
Score = 92.3 bits (230), Expect = 3e-24
Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 2/108 (1%)
Query: 10 WNNYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRENPCQHPV 69
+ ++ ++ EL+ R G D T+ G AH +L+ CS +F++++ +
Sbjct: 4 FVQHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDG--SGGS 61
Query: 70 VILKDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGLAGA 117
V+L E +L F Y G + ++ D L A L++
Sbjct: 62 VVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAARELRVPEAVEL 109
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics,
struct genomics consortium, SGC, structural protein;
2.40A {Homo sapiens}
Length = 144
Score = 90.4 bits (225), Expect = 3e-23
Identities = 24/118 (20%), Positives = 52/118 (44%), Gaps = 4/118 (3%)
Query: 4 ELFCLKWNNYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFREN 63
+ + + + ++ L S R + D ++ DG +I K IL+A S Y RT N
Sbjct: 21 QSMAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYN 80
Query: 64 P----CQHPVVILKDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGLAGA 117
P + L+ I+ + +L +++ G + +++ + ++ A+ L + L
Sbjct: 81 PPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTL 138
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain
containing 33, kaiso transcriptio ZNF-kaiso,
ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB:
3m4t_A 3m8v_A
Length = 116
Score = 88.5 bits (220), Expect = 8e-23
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 3 NELFCLKWNNYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRE 62
+L Y+ +++ L+ R G DVT++ + RK AHK ILSA S+YF +F
Sbjct: 4 RKLISATDIQYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSV 63
Query: 63 NPCQHPVVILKDINYEDIEAVLCFVYQGTVY-ISKSRMDSFLKTAESLQIKGL 114
VV L I E +L ++Y + + +D +K+ + L +K +
Sbjct: 64 A---GQVVELSFIRAEIFAEILNYIYSSKIVRVRSDLLDELIKSGQLLGVKFI 113
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain,
BTB/POZ domain, ZBTB32, zinc finger domain-containing
protein 32; 2.00A {Homo sapiens}
Length = 119
Score = 86.9 bits (216), Expect = 3e-22
Identities = 21/107 (19%), Positives = 43/107 (40%), Gaps = 8/107 (7%)
Query: 11 NNYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRENPCQHPVV 70
+ Y S+ + +L + R L D I ++ AH ++L+ S +
Sbjct: 12 SPYGSDRLVQL-AARLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGRRGQ-------WA 63
Query: 71 ILKDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGLAGA 117
+ + I+ +L FVY +V + + + A +L ++ L A
Sbjct: 64 LGEGISPSTFAQLLNFVYGESVELQPGELRPLQEAARALGVQSLEEA 110
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation,
kelch repeat, neurodegeneration, phosphoprotein,
polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB:
3hve_B
Length = 256
Score = 90.3 bits (225), Expect = 4e-22
Identities = 24/111 (21%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Query: 11 NNYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRENP----CQ 66
+ + ++ L S R + D ++ DG +I K IL+A S Y RT NP
Sbjct: 12 PQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGS 71
Query: 67 HPVVILKDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGLAGA 117
+ L+ I+ + +L +++ G + +++ + ++ A+ L + L
Sbjct: 72 TYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTL 122
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein
binding; 2.40A {Homo sapiens}
Length = 145
Score = 84.1 bits (209), Expect = 8e-21
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 6/104 (5%)
Query: 15 SNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIF----RENPCQHPVV 70
+ EL L + D + G++ AHK IL+A S F +F E+ + V
Sbjct: 10 CRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEES--KKNRV 67
Query: 71 ILKDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGL 114
+ D+ E + ++CF+Y G D L A+ ++ L
Sbjct: 68 EINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERL 111
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus,
UBL conjugation pathway, protein binding; 2.50A {Homo
sapiens}
Length = 172
Score = 82.3 bits (204), Expect = 8e-20
Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 6/104 (5%)
Query: 15 SNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIF----RENPCQHPVV 70
+ EL L + D + G++ AHK IL+A S F +F E + V
Sbjct: 19 CRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEE--SKKNRV 76
Query: 71 ILKDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGL 114
+ D+ E + ++CF+Y G D L A+ ++ L
Sbjct: 77 EINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERL 120
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC,
structural genomics consortium, kelch repeat, secreted,
protein binding; 2.60A {Homo sapiens}
Length = 279
Score = 82.3 bits (204), Expect = 5e-19
Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 17/127 (13%)
Query: 1 MANELFCLKWNNYTSNIITELDSLRTDGDLVDVTILC---DGRKITAHKVILSACSSYFR 57
M E F +++ S + + R G D+T+ GR+ AH+ +L+A + YF
Sbjct: 5 MEAEDFE--CSSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFT 62
Query: 58 TIF----RENPCQHPVVILKDINYED------IEAVLCFVYQGTVYISKSRMDSFLKTAE 107
+ E + V ++ + E +EAV+ ++Y G + +S + L+ A+
Sbjct: 63 PLLSGQFSE--SRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELAD 120
Query: 108 SLQIKGL 114
+ L
Sbjct: 121 RFLLIRL 127
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo
sapiens}
Length = 109
Score = 75.3 bits (186), Expect = 7e-18
Identities = 21/103 (20%), Positives = 41/103 (39%), Gaps = 11/103 (10%)
Query: 23 SLRTDGDLVDVTILC----DGRKITAHKVILSACSSYFRTIF----RENPCQHPVVILKD 74
S+ + + DV + R + AHK +L+ SS F +F E + + D
Sbjct: 1 SMFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEV---KSEIHIPD 57
Query: 75 INYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGLAGA 117
+ +L ++Y + + + + L A+ + LA A
Sbjct: 58 VEPAAFLILLKYMYSDEIDLEADTVLATLYAAKKYIVPALAKA 100
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL
conjugation pathway, protein binding, ligase; 2.62A
{Homo sapiens} PDB: 3hu6_A
Length = 312
Score = 76.1 bits (187), Expect = 1e-16
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 6/104 (5%)
Query: 15 SNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIF----RENPCQHPVV 70
+ EL L + D + G++ AHK IL+A S F +F E+ + V
Sbjct: 159 CRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEES--KKNRV 216
Query: 71 ILKDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGL 114
+ D+ E + ++CF+Y G D L A+ ++ L
Sbjct: 217 EINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERL 260
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.013
Identities = 30/215 (13%), Positives = 64/215 (29%), Gaps = 66/215 (30%)
Query: 1 MANELFCLKWNNYTS--NIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRT 58
M ++F L N S ++ L L D + T D + + + + R
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP-NWTSRSDHSSNIKLR--IHSIQAELRR 236
Query: 59 IFRENPCQHPVVILKDI-NYEDIEA--VLC--------------FVYQGTVYISKSRMDS 101
+ + P ++ +++L ++ N + A + C T +IS
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 102 FLKTAESLQI--K---------------------GLAGAS--NMMG--DNESQIQNED-S 133
L E + K + S + + DN + + +
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 134 RSMDSSLVNQHDRHSLSGVGMDKDSIDPDEESNTY 168
++SSL + ++P E +
Sbjct: 357 TIIESSL----------------NVLEPAEYRKMF 375
>1squ_A CHEX protein; alpha-beta sandwich, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; 2.40A {Thermotoga maritima}
SCOP: d.252.1.1 PDB: 1xko_A
Length = 155
Score = 29.5 bits (66), Expect = 0.51
Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 15/101 (14%)
Query: 46 KVILSACSSYFRTIFRENPC-QHPVVILKDINYEDIEAVLCFV--YQGTVYISKSRMDSF 102
++ + R + P P + + V+ +G++ S S
Sbjct: 7 NALIGSVYETIRDVLGIEPKTGKPSTVSHIEIPHSLVTVIGITGGIEGSLIYSFSS---- 62
Query: 103 LKTAESLQIKGLAGASNMMGDNESQIQNEDSRSMDSSLVNQ 143
+TA + S MMG E +E + S L N
Sbjct: 63 -ETALKV-------VSAMMGGMEYNQLDELALSAIGELGNM 95
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 29.8 bits (67), Expect = 0.76
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 19 TELDSLRTDGDLVDVTILCDGRKITAHKVILSA 51
+ +L + + V + DG+ A + L A
Sbjct: 185 GRVVTLIFENNDVKGAVTADGKIWRAERTFLCA 217
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.97
Identities = 28/153 (18%), Positives = 39/153 (25%), Gaps = 57/153 (37%)
Query: 26 TDGDLVDV---TILCDGRKITAHKVILSACSS----------YFRTIF----RENPCQ-- 66
T G+L +TA V ++ S +F R C
Sbjct: 259 TPGELRSYLKGATGHSQGLVTA--VAIAETDSWESFFVSVRKAITVLFFIGVR---CYEA 313
Query: 67 HPVVILKDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGL--------AGAS 118
+P L ED +G S M L I L +
Sbjct: 314 YPNTSLPPSILEDSLEN----NEGV----PSPM---------LSISNLTQEQVQDYVNKT 356
Query: 119 NMMGDNESQIQNEDSRSMDSSLVNQHDRHSLSG 151
N Q++ SLVN +SG
Sbjct: 357 NSHLPAGKQVE--------ISLVNGAKNLVVSG 381
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 29.0 bits (65), Expect = 1.3
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 19 TELDSLRTDGDLVDVTILCDGRKITAHKVILSA 51
+ L D D V VT D A KV+L+
Sbjct: 174 ETVTELVPDADGVSVT--TDRGTYRAGKVVLAC 204
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase; HET:
FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 28.6 bits (64), Expect = 2.0
Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 24/78 (30%)
Query: 1 MANELFCLKWNNYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIF 60
M+ E+ ++ T + + GD+V+VT + DG AH VI+
Sbjct: 213 MSQEIPEIRLQ-------TVVTGIDQSGDVVNVT-VKDGHAFQAHSVIV--------AT- 255
Query: 61 RENPCQHPVVILKDINYE 78
P+ + I +
Sbjct: 256 -------PMNTWRRIVFT 266
>1eay_C CHEA; signal transduction complex, kinase, response regulator,
chemotaxis; 2.00A {Escherichia coli} SCOP: d.58.24.1
Length = 74
Score = 26.7 bits (59), Expect = 2.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 69 VVILKDINYEDIEAVLCFV 87
++ DI +DI AVLCFV
Sbjct: 43 AILPGDIAEDDITAVLCFV 61
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 27.7 bits (62), Expect = 3.4
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 19 TELDSLRTDGDLVDVTILCDGRKITAHKVILSA 51
+ ++R D D V + + A K I+ A
Sbjct: 170 CPVTAIRHDDDGVTIE--TADGEYQAKKAIVCA 200
>1ffg_B Chemotaxis protein CHEA; doubly wound (beta/alpha)5 fold,
transferase/signaling protein complex; 2.10A
{Escherichia coli} SCOP: d.58.24.1 PDB: 1a0o_B 1fwp_A
1ffs_B 1ffw_B
Length = 134
Score = 26.7 bits (58), Expect = 3.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 69 VVILKDINYEDIEAVLCFV 87
++ DI +DI AVLCFV
Sbjct: 74 AILPGDIAEDDITAVLCFV 92
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.128 0.361
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,391,263
Number of extensions: 189917
Number of successful extensions: 296
Number of sequences better than 10.0: 1
Number of HSP's gapped: 275
Number of HSP's successfully gapped: 33
Length of query: 236
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 145
Effective length of database: 4,160,982
Effective search space: 603342390
Effective search space used: 603342390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (25.2 bits)