RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9147
(236 letters)
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 122
Score = 95.2 bits (236), Expect = 9e-26
Identities = 28/109 (25%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 8 LKWNNYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRENPCQH 67
+++ + S+++ L+ LR+ L DV I+ + AHK +L ACS F +IF + ++
Sbjct: 3 IQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRN 62
Query: 68 --PVVILKDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGL 114
+ + +IN E +L F+Y + + + + + + TA LQ++ +
Sbjct: 63 LSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHV 111
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF)
protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 121
Score = 85.1 bits (210), Expect = 7e-22
Identities = 26/107 (24%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
Query: 8 LKWNNYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRENPCQH 67
L+ ++ + ++ + + +R G L DV I+ D ++ AH+ +L+ S F +F N
Sbjct: 6 LQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNSQH- 64
Query: 68 PVVILKDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGL 114
L ++ + + +L + Y T+ +D L AE L+I+ L
Sbjct: 65 --YTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYL 109
>d1ffgb_ d.58.24.1 (B:) CheY-binding domain of CheA {Escherichia
coli [TaxId: 562]}
Length = 68
Score = 25.0 bits (55), Expect = 2.1
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 78 EDIEAVLCFV 87
+DI AVLCFV
Sbjct: 48 DDITAVLCFV 57
>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation
inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 297
Score = 26.3 bits (56), Expect = 3.1
Identities = 8/39 (20%), Positives = 12/39 (30%), Gaps = 3/39 (7%)
Query: 19 TELDSLRTDGDLVDVT-ILCDGRKITAHKVILSACSSYF 56
T +D + D + A VI +YF
Sbjct: 257 TPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADP--TYF 293
>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas
putida [TaxId: 303]}
Length = 133
Score = 25.6 bits (55), Expect = 3.4
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
Query: 6 FCLKWNNYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSA 51
+ T + + TD V + DG ++ A VI
Sbjct: 88 REAGVDIRTGTQVCGFEM-STDQQKVTAVLCEDGTRLPADLVIAGI 132
>d1luga_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
erythrocytes, isozyme II [TaxId: 9606]}
Length = 259
Score = 26.0 bits (56), Expect = 4.4
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
Query: 81 EAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGLAGASNMMGDNESQIQNEDSRSMDSS 139
E V V + + +S ++ F L G +M DN Q +R + +S
Sbjct: 203 ECVTWIVLKEPISVSSEQVLKF----RKLNFNGEGEPEELMVDNWRPAQPLKNRQIKAS 257
>d1xkoa_ d.252.1.1 (A:) Chemotaxis protein CheX {Thermotoga maritima
[TaxId: 2336]}
Length = 153
Score = 25.3 bits (55), Expect = 4.9
Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 15/101 (14%)
Query: 46 KVILSACSSYFRTIFRENP-CQHPVVILKDINYEDIEAVLCFV--YQGTVYISKSRMDSF 102
++ + R + P P + + V+ +G++ S S
Sbjct: 8 NALIGSVYETIRDVLGIEPKTGKPSTVSHIEIPHSLVTVIGITGGIEGSLIYSFSS---- 63
Query: 103 LKTAESLQIKGLAGASNMMGDNESQIQNEDSRSMDSSLVNQ 143
+TA + S MMG E +E + S L N
Sbjct: 64 -ETALKV-------VSAMMGGMEYNQLDELALSAIGELGNM 96
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 56
Score = 23.5 bits (51), Expect = 5.5
Identities = 6/34 (17%), Positives = 15/34 (44%)
Query: 203 GSISPVNSISTQSSGQVPKVGRASSRVIPKYLHN 236
G + + + S + +VP + + + I L +
Sbjct: 23 GGLQGLRNASVEEIAKVPGISQGLAEKIFWSLKH 56
>d2znca_ b.74.1.1 (A:) Carbonic anhydrase {Mouse (Mus musculus),
isozyme IV [TaxId: 10090]}
Length = 258
Score = 25.2 bits (54), Expect = 7.0
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Query: 81 EAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGLAGASNMMGDNESQIQNEDSRSMDSS 139
E V+ VY+ + I K++ F K + M DN +Q R + S
Sbjct: 203 ETVIWTVYKQPIKIHKNQFLEFSKN-----LYYDEDQKLNMKDNVRPLQPLGKRQVFKS 256
>d1hcba_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
erythrocytes, isozyme I [TaxId: 9606]}
Length = 258
Score = 25.2 bits (54), Expect = 7.0
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 81 EAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGLAGASNMMGDNESQIQNEDSRSMDSS 139
E+V + + ++ +S ++ F SL + M N Q R++ +S
Sbjct: 203 ESVTWIICKESISVSSEQLAQF----RSLLSNVEGDNAVPMQHNNRPTQPLKGRTVRAS 257
>d1keqa_ b.74.1.1 (A:) Carbonic anhydrase {Mouse (Mus musculus),
liver, isozyme V [TaxId: 10090]}
Length = 238
Score = 25.2 bits (54), Expect = 7.1
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 81 EAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGLAGASNMMGDNESQIQNEDSRSMDSS 139
E+V V + V +S S++ F +L G ++M +N +Q R + SS
Sbjct: 181 ESVTWIVQKTPVEVSPSQLSMF----RTLLFSGRGEEEDVMVNNYRPLQPLRDRKLRSS 235
>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia
fasciculata [TaxId: 5656]}
Length = 117
Score = 24.4 bits (52), Expect = 7.1
Identities = 4/33 (12%), Positives = 10/33 (30%)
Query: 19 TELDSLRTDGDLVDVTILCDGRKITAHKVILSA 51
+ + D + G + V+L+
Sbjct: 83 ENPAKVTKNADGTRHVVFESGAEADYDVVMLAI 115
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.128 0.361
Gapped
Lambda K H
0.267 0.0573 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 817,984
Number of extensions: 35215
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 16
Length of query: 236
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 153
Effective length of database: 1,268,006
Effective search space: 194004918
Effective search space used: 194004918
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.8 bits)