BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9150
(97 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Human Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Human Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Human Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 2 HSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIE 61
+ D V G FIC A G PRP I W K G ++ + + E+ G+ + +
Sbjct: 11 RTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRF-EVIEFDDGSGSV---LR 66
Query: 62 IDP-ATQMDAGIYECYADNMYNVDTRTFKTDFSI 94
I P T D IYEC A N NV + T ++
Sbjct: 67 IQPLRTPRDEAIYECVASN--NVGEISVSTRLTV 98
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 17 FICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECY 76
+C A G P P ITWFKD + + T N ++ I + ++I+ + + D G YEC
Sbjct: 128 MLCAASGNPDPEITWFKDFLPVDTSNN-NGRIKQLRSESIGA-LQIEQSEESDQGKYECV 185
Query: 77 ADN 79
A N
Sbjct: 186 ATN 188
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Human Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Human Receptor Protein Tyrosine Phosphatase Lar In
Complex With Sucrose Octasulphate
Length = 214
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDP- 64
D + G F+C A G+P+P ITW K G ++ + + + E+ G + + I P
Sbjct: 15 DQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRF-EVIEFDDGAGSV---LRIQPL 70
Query: 65 ATQMDAGIYECYADN 79
Q D IYEC A N
Sbjct: 71 RVQRDEAIYECTATN 85
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 17 FICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKS-KIEIDPATQMDAGIYEC 75
+C A G P P I+WFKD + V+ + +++S ++I+ + + D G YEC
Sbjct: 128 MLCAAGGNPDPEISWFKD------FLPVDPATSNGRIKQLRSGALQIESSEESDQGKYEC 181
Query: 76 YADN 79
A N
Sbjct: 182 VATN 185
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDP- 64
D + G F+C A G+P+P ITW K G ++ + + + E+ G + + I P
Sbjct: 16 DQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRF-EVIEFDDGAGSV---LRIQPL 71
Query: 65 ATQMDAGIYECYADN 79
Q D IYEC A N
Sbjct: 72 RVQRDEAIYECTATN 86
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKS-KIEIDPATQMDA 70
G +C A G P P I+WFKD + V+ + +++S ++I+ + + D
Sbjct: 124 GRTATMLCAAGGNPDPEISWFKD------FLPVDPAASNGRIKQLRSGALQIESSEESDQ 177
Query: 71 GIYECYADN 79
G YEC A N
Sbjct: 178 GKYECVATN 186
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 43.9 bits (102), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 9/76 (11%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
D E +G + + C+A GKPRP + W +DG L + + + G + SK+ ++
Sbjct: 303 DTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS----GGELRFSKLVLE-- 356
Query: 66 TQMDAGIYECYADNMY 81
D+G+Y+C A+N +
Sbjct: 357 ---DSGMYQCVAENKH 369
Score = 30.4 bits (67), Expect = 0.29, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 13/75 (17%)
Query: 12 GHKIVFICMAKGKPRPHITWFK-DGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
G + C A G P P I W K DG + +W + + I D
Sbjct: 222 GQMVTLECFAFGNPVPQIKWRKLDGSQ--------TSKWLSS----EPLLHIQNVDFEDE 269
Query: 71 GIYECYADNMYNVDT 85
G YEC A+N+ DT
Sbjct: 270 GTYECEAENIKGRDT 284
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 14 KIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIY 73
K+ C A+ P W +G EL M + D + S +P DAG Y
Sbjct: 24 KVTLTCRARANPPATYRWKMNGTEL--KMGPDSRYRLVAGDLVIS----NPVKAKDAGSY 77
Query: 74 ECYADN 79
+C A N
Sbjct: 78 QCVATN 83
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 17 FICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKS-KIEIDPATQMDAGIYEC 75
+C A G P P ITWFKD + V+ + +++S ++I+ + + D G YEC
Sbjct: 128 MLCAASGNPDPEITWFKD------FLPVDPSASNGRIKQLRSGALQIESSEETDQGKYEC 181
Query: 76 YADNMYNV 83
A N V
Sbjct: 182 VATNSAGV 189
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 10 VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDP-ATQM 68
V G F+C A G P+P +TW K G ++ + + + E+ + + I P T
Sbjct: 19 VSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETI-EFDESAGAV---LRIQPLRTPR 74
Query: 69 DAGIYECYADN 79
D +YEC A N
Sbjct: 75 DENVYECVAQN 85
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 1 MHSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKI 60
+ D V G F+C A G P+P +TW K G ++ + + + E+ + +
Sbjct: 10 IKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETI-EFDESAGAV---L 65
Query: 61 EIDP-ATQMDAGIYECYADN 79
I P T D IYEC A N
Sbjct: 66 RIQPLRTPRDENIYECVAQN 85
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 17 FICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKS-KIEIDPATQMDAGIYEC 75
+C A G P P ITWFKD + V+ + +++S ++I+ + + D G YEC
Sbjct: 128 MLCAASGNPDPEITWFKD------FLPVDPSTSNGRIKQLRSGGLQIESSEETDQGKYEC 181
Query: 76 YADNMYNV 83
A N V
Sbjct: 182 VASNSAGV 189
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 17 FICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKS-KIEIDPATQMDAGIYEC 75
+C A G P P ITWFKD + V+ + +++S ++I+ + + D G YEC
Sbjct: 128 MLCAASGNPDPEITWFKD------FLPVDPSASNGRIKQLRSGALQIESSEETDQGKYEC 181
Query: 76 YADNMYNV 83
A N V
Sbjct: 182 VATNSAGV 189
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 10 VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDP-ATQM 68
V G F+C A G P+P +TW K G ++ + + + E+ + + I P T
Sbjct: 19 VSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETI-EFDESAGAV---LRIQPLRTPR 74
Query: 69 DAGIYECYADN 79
D +YEC A N
Sbjct: 75 DENVYECVAQN 85
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 11 LGHKIVFICMA-KGKPRPHITWFKDGVELYTHMYVNLHEW---HYGTDRIKSKIEIDPAT 66
+G++ V C G P +WFKDG+ + T + + D + DP T
Sbjct: 118 IGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVT 177
Query: 67 QMDAGIYECYADNMYNVDTRT 87
D+G Y C A N Y R+
Sbjct: 178 AFDSGEYYCQAQNGYGTAMRS 198
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 9/76 (11%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
D E +G + + C A GKPRP + W ++G L + V + D SK+ ++
Sbjct: 302 DTEADIGSNLRWGCAAAGKPRPTVRWLRNGEPLASQNRVEV----LAGDLRFSKLSLE-- 355
Query: 66 TQMDAGIYECYADNMY 81
D+G+Y+C A+N +
Sbjct: 356 ---DSGMYQCVAENKH 368
Score = 32.7 bits (73), Expect = 0.057, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 11/76 (14%)
Query: 10 VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
++G ++ C A G P P I W K L +W + ++I + D
Sbjct: 219 LVGQQVTLECFAFGNPVPRIKWRKVDGSLSP-------QWTTA----EPTLQIPSVSFED 267
Query: 70 AGIYECYADNMYNVDT 85
G YEC A+N DT
Sbjct: 268 EGTYECEAENSKGRDT 283
Score = 28.5 bits (62), Expect = 0.95, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 14 KIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIY 73
+++ C A+ P W +G E+ + H+ G I ++P DAG+Y
Sbjct: 23 QVLLACRARASPPATYRWKMNGTEMKLEPG-SRHQLVGGNLVI-----MNPTKAQDAGVY 76
Query: 74 ECYADN 79
+C A N
Sbjct: 77 QCLASN 82
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 11 LGHKIVFICMAK-GKPRPHITWFKDGVELYTHMYVN--LHEWHYGTDRIKSKIEIDPATQ 67
+G++ V C + G P TWFKDG+ + T+ Y + ++ DP +
Sbjct: 121 IGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSA 180
Query: 68 MDAGIYECYADNMY 81
D G Y C A N Y
Sbjct: 181 SDTGEYSCEARNGY 194
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 40.4 bits (93), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
D + + + C A G+P+P W K+G L T + + + GT + I
Sbjct: 304 DIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQ---GT------LNITIV 354
Query: 66 TQMDAGIYECYADNMYNV 83
DAG+Y+C A+N + V
Sbjct: 355 NLSDAGMYQCVAENKHGV 372
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 14 KIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEI-DPATQMDAGI 72
K+ C KG P+PHI W +G ++ M ++ Y + + I +P DAG
Sbjct: 25 KVKLSCEVKGNPKPHIRWKLNGTDVDIGM-----DFRYSV--VDGSLLINNPNKTQDAGT 77
Query: 73 YECYADNMY-NVDTRTFKTDFS 93
Y+C A N + + +R K F+
Sbjct: 78 YQCIATNSFGTIVSREAKLQFA 99
Score = 30.4 bits (67), Expect = 0.28, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 14/71 (19%)
Query: 12 GHKIVFICMAKGKPRPHITWFK-DGVELYTHMYVNLHEWHYGTDRIKSK--IEIDPATQM 68
G + C A G P P I W + DG + R KS +EI Q
Sbjct: 220 GTTVKLECFALGNPVPTILWRRADGKPIARK-----------ARRHKSNGILEIPNFQQE 268
Query: 69 DAGIYECYADN 79
DAG YEC A+N
Sbjct: 269 DAGSYECVAEN 279
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 40.4 bits (93), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
D + + + C A G+P+P W K+G L T + + + GT + I
Sbjct: 303 DIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQ---GT------LNITIV 353
Query: 66 TQMDAGIYECYADNMYNV 83
DAG+Y+C A+N + V
Sbjct: 354 NLSDAGMYQCVAENKHGV 371
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 14 KIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEI-DPATQMDAGI 72
K+ C KG P+PHI W +G ++ M ++ Y + + I +P DAG
Sbjct: 24 KVKLSCEVKGNPKPHIRWKLNGTDVDIGM-----DFRYSV--VDGSLLINNPNKTQDAGT 76
Query: 73 YECYADNMY-NVDTRTFKTDFS 93
Y+C A N + + +R K F+
Sbjct: 77 YQCIATNSFGTIVSREAKLQFA 98
Score = 30.4 bits (67), Expect = 0.28, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 14/71 (19%)
Query: 12 GHKIVFICMAKGKPRPHITWFK-DGVELYTHMYVNLHEWHYGTDRIKSK--IEIDPATQM 68
G + C A G P P I W + DG + R KS +EI Q
Sbjct: 219 GTTVKLECFALGNPVPTILWRRADGKPIARK-----------ARRHKSNGILEIPNFQQE 267
Query: 69 DAGIYECYADN 79
DAG YEC A+N
Sbjct: 268 DAGSYECVAEN 278
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 13/70 (18%)
Query: 18 ICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKS----KIEIDPATQMDAGIY 73
+C A G P P ITWFKD + + + RIK ++I+ + + D G Y
Sbjct: 129 LCAASGNPDPEITWFKDFLPV---------DPSASNGRIKQLRSGALQIESSEETDQGKY 179
Query: 74 ECYADNMYNV 83
EC A N V
Sbjct: 180 ECVATNSAGV 189
Score = 38.5 bits (88), Expect = 9e-04, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 17 FICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDP-ATQMDAGIYEC 75
F+C A G P+P +TW K G ++ + + + + + + I P T D +YEC
Sbjct: 26 FVCQATGDPKPRVTWNKKGKKVNSQRFETIE----FDESAGAVLRIQPLRTPRDENVYEC 81
Query: 76 YADN 79
A N
Sbjct: 82 VAQN 85
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 7 YEYVLGHKIVFICMAKGKPRPHITWFKDGVEL 38
+E + G + C+A G P P++ W + +L
Sbjct: 215 HEIMPGGNVNITCVAVGSPMPYVKWMQGAEDL 246
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 15 IVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYE 74
+ F C + G P+P + W K+G E + ++ Y T I +D D G Y
Sbjct: 35 VKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYAT----WSIIMDSVVPSDKGNYT 90
Query: 75 CYADNMYNVDTRTFKTDF 92
C +N Y T++ D
Sbjct: 91 CIVENEYGSINHTYQLDV 108
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
Query: 10 VLGHKIVFICMAKGKPRPHITWFKD--------GVELYTHMYVNLHEWHYGTDRIKSKIE 61
LG + F+C P+PHI W K G + ++ + TD+ +
Sbjct: 129 ALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLH 188
Query: 62 IDPATQMDAGIYECYADN 79
+ + DAG Y C A N
Sbjct: 189 LRNVSFEDAGEYTCLAGN 206
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 15 IVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYE 74
+ F C + G P+P + W K+G E + ++ Y T I +D D G Y
Sbjct: 34 VKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYAT----WSIIMDSVVPSDKGNYT 89
Query: 75 CYADNMYNVDTRTFKTDF 92
C +N Y T++ D
Sbjct: 90 CIVENEYGSINHTYQLDV 107
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
Query: 10 VLGHKIVFICMAKGKPRPHITWFKD--------GVELYTHMYVNLHEWHYGTDRIKSKIE 61
LG + F+C P+PHI W K G + ++ + TD+ +
Sbjct: 128 ALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLH 187
Query: 62 IDPATQMDAGIYECYADN 79
+ + DAG Y C A N
Sbjct: 188 LRNVSFEDAGEYTCLAGN 205
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
G+++ C P I+WF+DG L + Y N+ ++ + S +E+ P ++ D G
Sbjct: 33 GNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPS---ASYLEVTPDSENDFG 89
Query: 72 IYECYADNMYNVDTRTF 88
Y C A N ++ F
Sbjct: 90 NYNCTAVNRIGQESLEF 106
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Query: 15 IVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYE 74
+ F C + G P P + W K+G E + ++ Y T I +D D G Y
Sbjct: 34 VKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYAT----WSIIMDSVVPSDKGNYT 89
Query: 75 CYADNMYNVDTRTFKTDF 92
C +N Y T++ D
Sbjct: 90 CIVENEYGSINHTYQLDV 107
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
Query: 10 VLGHKIVFICMAKGKPRPHITWFKD--------GVELYTHMYVNLHEWHYGTDRIKSKIE 61
LG + F+C P+PHI W K G + ++ + TD+ +
Sbjct: 128 ALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLH 187
Query: 62 IDPATQMDAGIYECYADN 79
+ + DAG Y C A N
Sbjct: 188 LRNVSFEDAGEYTCLAGN 205
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDP 64
+ + + G K V C G P+P ++W K L + + + E G+ RI +
Sbjct: 108 INVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLE--SGSLRIHN------ 159
Query: 65 ATQMDAGIYECYADN 79
+ DAG Y C A N
Sbjct: 160 VQKEDAGQYRCVAKN 174
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 17 FICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECY 76
F+C + P+P I+W ++ + + L + Y + I D GIY C
Sbjct: 27 FMCAVESYPQPEISWTRN------KILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCT 80
Query: 77 ADN 79
A+N
Sbjct: 81 ANN 83
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 10/75 (13%)
Query: 11 LGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSK-IEIDPATQMD 69
+GH ++ C A G P P+I W K+ V++ Y +K ++I+ + + D
Sbjct: 124 VGHTVLMTCKAIGNPTPNIYWIKN------QTKVDMSNPRY---SLKDGFLQIENSREED 174
Query: 70 AGIYECYADNMYNVD 84
G YEC A+N +
Sbjct: 175 QGKYECVAENSMGTE 189
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 11 LGHKIVFICMAKGKPRPHITWFKDGVELY-THMYVNLHEWHYGTDRIKSKIEIDPA-TQM 68
+G F C A+G P P I W K+G ++ T + E G S + I+P
Sbjct: 20 VGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGI----SILRIEPVRAGR 75
Query: 69 DAGIYECYADN 79
D YEC A+N
Sbjct: 76 DDAPYECVAEN 86
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 11 LGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
+G I C A G P P I WFKD L + L + + + I + D
Sbjct: 24 IGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNR-------NLTIRRVRKEDE 76
Query: 71 GIYECYA 77
G+Y C A
Sbjct: 77 GLYTCQA 83
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 10/75 (13%)
Query: 11 LGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSK-IEIDPATQMD 69
+GH ++ C A G P P+I W K+ V++ Y +K ++I+ + + D
Sbjct: 126 VGHTVLMTCKAIGNPTPNIYWIKN------QTKVDMSNPRY---SLKDGFLQIENSREED 176
Query: 70 AGIYECYADNMYNVD 84
G YEC A+N +
Sbjct: 177 QGKYECVAENSMGTE 191
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 11 LGHKIVFICMAKGKPRPHITWFKDGVELY-THMYVNLHEWHYGTDRIKSKIEIDPA-TQM 68
+G F C A+G P P I W K+G ++ T + E G S + I+P
Sbjct: 22 VGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGI----SILRIEPVRAGR 77
Query: 69 DAGIYECYADN 79
D YEC A+N
Sbjct: 78 DDAPYECVAEN 88
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 2 HSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIE 61
F+ G ++ F C A G P P I+WF++G + + L G++ +++
Sbjct: 103 QKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILK----GSN---TELT 155
Query: 62 IDPATQMDAGIYECYADNMYNVDTR 86
+ D G Y C A N D +
Sbjct: 156 VRNIINSDGGPYVCRATNKAGEDEK 180
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 2 HSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIE 61
F+ G ++ F C A G P P I+WF++G + + L G++ +++
Sbjct: 9 QKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILK----GSN---TELT 61
Query: 62 IDPATQMDAGIYECYADNMYNVDTR 86
+ D G Y C A N D +
Sbjct: 62 VRNIINSDGGPYVCRATNKAGEDEK 86
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 14 KIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIK-----SKIEIDPATQM 68
++ +C A+G+P P ITW K V+ +T + + G +K S + I
Sbjct: 111 QVTLVCDAEGEPIPEITW-KRAVDGFT--FTEGDKSLDGRIEVKGQHGSSSLHIKDVKLS 167
Query: 69 DAGIYECYA 77
D+G Y+C A
Sbjct: 168 DSGRYDCEA 176
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 7/85 (8%)
Query: 2 HSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIE 61
F+ G ++ F C A G P P I+WF++G + +E Y +++
Sbjct: 199 QKSFNATAERGEEMTFSCRASGSPEPAISWFRNG------KLIEENE-KYILKGSNTELT 251
Query: 62 IDPATQMDAGIYECYADNMYNVDTR 86
+ D G Y C A N D +
Sbjct: 252 VRNIINSDGGPYVCRATNKAGEDEK 276
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 8 EYVLGHKIVFICMAKGKPRPHITWFK-DGVELYTHMYVNLHEWHYGTDRIKSKIEIDPAT 66
E +G F C A G+P I W+ G ++ + V + + + ++S++ I A
Sbjct: 15 ELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQK-----EGVRSRLTIYNAN 68
Query: 67 QMDAGIYECYA 77
DAGIY C A
Sbjct: 69 IEDAGIYRCQA 79
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 19 CMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYAD 78
C G P P ++W DG + + H+ + + S I I+P T DAGIY C A
Sbjct: 31 CKVSGLPTPDLSWQLDGKPVRPD---SAHKMLVRENGVHSLI-IEPVTSRDAGIYTCIAT 86
Query: 79 NMYNVDTRTFKTDFSITF 96
N R + FS+
Sbjct: 87 N------RAGQNSFSLEL 98
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 11 LGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
LG C G+P P I W++ G EL + ++ +D + + Q D
Sbjct: 21 LGEAAQLSCQIVGRPLPDIKWYRFGKEL-----IQSRKYKMSSDGRTHTLTVMTEEQEDE 75
Query: 71 GIYECYADN 79
G+Y C A N
Sbjct: 76 GVYTCIATN 84
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human
Apep-1
Length = 99
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEI 62
S D G ++ +G+P+P ++W ++ + E G R++ I
Sbjct: 11 SLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLR----I 66
Query: 63 DPATQMDAGIYECYADNMYNV 83
A + DAG Y C A N Y
Sbjct: 67 LAAERGDAGFYTCKAVNEYGA 87
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
G+ I C K P I W +D + L NL + G I +EI P + D G
Sbjct: 115 GNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMI---LEIAPTSDNDFG 171
Query: 72 IYECYADN 79
Y C A N
Sbjct: 172 RYNCTATN 179
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 14 KIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIK-----SKIEIDPATQM 68
++ +C A+G+P P ITW K V+ +T + + G +K S + I
Sbjct: 17 QVTLVCDAEGEPIPEITW-KRAVDGFT--FTEGDKSLDGRIEVKGQHGSSSLHIKDVKLS 73
Query: 69 DAGIYECYA 77
D+G Y+C A
Sbjct: 74 DSGRYDCEA 82
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 7 YEYVLGHKIVFICMAKGKPRPHITWFKDGVEL 38
Y+ G + F C G P+P I WFKDG ++
Sbjct: 17 YKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQI 48
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 7 YEYVLGHKIVFICMAKGKPRPHITWFKDGVEL 38
Y+ G + F C G P+P I WFKDG ++
Sbjct: 18 YKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQI 49
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 35.4 bits (80), Expect = 0.007, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 35/80 (43%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
G + C+A G P P I+W DG ++ + + ++ + S + I D G
Sbjct: 444 GPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGG 503
Query: 72 IYECYADNMYNVDTRTFKTD 91
+Y+C A + V + K +
Sbjct: 504 LYKCIAKSKVGVAEHSAKLN 523
Score = 33.5 bits (75), Expect = 0.031, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 15/69 (21%)
Query: 11 LGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
G VF C G P ++W KDG + +S + I+ + D
Sbjct: 357 FGRPAVFTCQYTGNPIKTVSWMKDGKAI---------------GHSESVLRIESVKKEDK 401
Query: 71 GIYECYADN 79
G+Y+C+ N
Sbjct: 402 GMYQCFVRN 410
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 19 CMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSK---IEIDPATQMDAGIYEC 75
C A G P+P +TW K V Y +L + +D I+ + + +D + + G Y C
Sbjct: 736 CKADGFPKPQVTW-KKAVGDTPGEYKDLKK----SDNIRVEEGTLHVDNIQKTNEGYYLC 790
Query: 76 YADN 79
A N
Sbjct: 791 EAIN 794
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 16/99 (16%)
Query: 3 SHFDYE-YVLGHKIVFICMAKGKPRPHITWFK--DGVELYTHMYVNLHEWHYGTDRIKS- 58
+ FD + Y + +C A+G P P W+K +G + +N DR+K
Sbjct: 253 AKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLN--------DRVKQV 304
Query: 59 --KIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFSIT 95
+ I A D+G Y C +N +V + +T ++T
Sbjct: 305 SGTLIIKDAVVEDSGKYLCVVNN--SVGGESVETVLTVT 341
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 11 LGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
LG + +C A G P P ++W KDG + + E H +D S++ I + D
Sbjct: 210 LGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDD--EKHIFSDD-SSELTIRNVDKNDE 266
Query: 71 GIYECYADN 79
Y C A+N
Sbjct: 267 AEYVCIAEN 275
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 5/68 (7%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
G F C G+P P +TW + G L T + Y KS EI D G
Sbjct: 29 GESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKY-----KSTFEISSVQASDEG 83
Query: 72 IYECYADN 79
Y +N
Sbjct: 84 NYSVVVEN 91
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 5/68 (7%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
G F C G+P P +TW + G L T + Y KS EI D G
Sbjct: 23 GESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKY-----KSTFEISSVQASDEG 77
Query: 72 IYECYADN 79
Y +N
Sbjct: 78 NYSVVVEN 85
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From
The Neural Cell Adhesion Molecule
Length = 107
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 2 HSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHY-GTDRIKSKI 60
S + L + C A G P P +TW KDG + + ++Y G++ I K+
Sbjct: 18 QSTMNATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELIIKKV 77
Query: 61 EIDPATQMDAGIYECYADN 79
+ + D Y C A+N
Sbjct: 78 D-----KSDEAEYICIAEN 91
>pdb|2E7C|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Myosin-Binding Protein C, Fast-Type
Length = 118
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 10/89 (11%)
Query: 1 MHSHFDYEYV--LGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKS 58
+ H Y+ +G ++ + +GKPRP + W K G L T H T +
Sbjct: 26 LPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRV------HVRTSDFDT 79
Query: 59 KIEIDPATQMDAGIYECYA--DNMYNVDT 85
+ A + D+G YE +NM + T
Sbjct: 80 VFFVRQAARSDSGEYELSVQIENMKDTAT 108
>pdb|2EO1|A Chain A, Solution Structure Of The Ig Domain Of Human Obscn
Protein
Length = 102
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEI 62
+H + + G C + + +TW+KDG +L + V + G R ++ +
Sbjct: 17 AHREVQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSSSKVRVE--AVGCTR---RLVV 70
Query: 63 DPATQMDAGIYECYADNM 80
A Q +AG Y C A
Sbjct: 71 QQAGQAEAGEYSCEAGGQ 88
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 10 VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
V G + C+ G+P P + W K G +L + D + + + A D
Sbjct: 27 VSGAEAELKCVVLGEPPPVVVWEKGGQQLAAS-----ERLSFPADGAEHGLLLTAALPTD 81
Query: 70 AGIYECYADN 79
AG+Y C A N
Sbjct: 82 AGVYVCRARN 91
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
F17r Mutant Complex
Length = 109
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 5/79 (6%)
Query: 1 MHSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKI 60
+ V G + C+ G+P P + W K G +L + D + +
Sbjct: 18 LRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAAS-----ERLSFPADGAEHGL 72
Query: 61 EIDPATQMDAGIYECYADN 79
+ A DAG+Y C A N
Sbjct: 73 LLTAALPTDAGVYVCRARN 91
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex
With Obscurin- Like 1
Length = 107
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 10 VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
V G + C+ G+P P + W K G +L + D + + + A D
Sbjct: 26 VSGAEAELKCVVLGEPPPVVVWEKGGQQLAAS-----ERLSFPADGAEHGLLLTAALPTD 80
Query: 70 AGIYECYADN 79
AG+Y C A N
Sbjct: 81 AGVYVCRARN 90
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 34.3 bits (77), Expect = 0.019, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 11 LGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
+G I C A G P P I WFKD L + L + + + I + D
Sbjct: 680 IGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGN-------RNLTIRRVRKEDE 732
Query: 71 GIYECYA 77
G+Y C A
Sbjct: 733 GLYTCQA 739
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 8 EYVLGHKIVFICMAKGKPRPHITWFKDGVEL 38
E +G ++ G P P I W+K+G+ L
Sbjct: 341 EATVGERVRIPAKYLGYPPPEIKWYKNGIPL 371
>pdb|1HCF|X Chain X, Crystal Structure Of Trkb-D5 Bound To Neurotrophin-45
pdb|1HCF|Y Chain Y, Crystal Structure Of Trkb-D5 Bound To Neurotrophin-45
Length = 101
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 12/77 (15%)
Query: 22 KGKPRPHITWFKDGVELY------THMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYEC 75
KG P+P + WF +G L T ++V H ++G +++D T M+ G Y
Sbjct: 26 KGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGC------LQLDNPTHMNNGDYTL 79
Query: 76 YADNMYNVDTRTFKTDF 92
A N Y D + F
Sbjct: 80 IAKNEYGKDEKQISAHF 96
>pdb|1WWB|X Chain X, Ligand Binding Domain Of Human Trkb Receptor
Length = 103
Score = 34.3 bits (77), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 12/78 (15%)
Query: 21 AKGKPRPHITWFKDGVELY------THMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYE 74
KG P+P + WF +G L T ++V H ++G +++D T M+ G Y
Sbjct: 25 VKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGC------LQLDNPTHMNNGDYT 78
Query: 75 CYADNMYNVDTRTFKTDF 92
A N Y D + F
Sbjct: 79 LIAKNEYGKDEKQISAHF 96
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 10/84 (11%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSK---IEIDPATQM 68
+ + F C A G P P I+W K+G E E G +++ + + ++
Sbjct: 30 ANTVRFRCPAAGNPTPSISWLKNGREFRG-------EHRIGGIKLRHQQWSLVMESVVPS 82
Query: 69 DAGIYECYADNMYNVDTRTFKTDF 92
D G Y C +N + +T+ D
Sbjct: 83 DRGNYTCVVENKFGSIRQTYTLDV 106
Score = 32.3 bits (72), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 7/86 (8%)
Query: 10 VLGHKIVFICMAKGKPRPHITWFK----DGVEL---YTHMYVNLHEWHYGTDRIKSKIEI 62
VLG + F C +PHI W K +G ++ T L W + ++ +
Sbjct: 127 VLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRL 186
Query: 63 DPATQMDAGIYECYADNMYNVDTRTF 88
++ D G Y C A N V + F
Sbjct: 187 ANVSERDGGEYLCRATNFIGVAEKAF 212
>pdb|3QQN|A Chain A, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
pdb|3QQN|B Chain B, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
Length = 137
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 20/93 (21%)
Query: 1 MHSHFDYEYVLGHKIVFICMAKGKPRPHITWF-------------KDGVEL-YTHMYVNL 46
+ + + +G + C A G P P I W+ DG L H++
Sbjct: 25 VQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDIXSQLWDGARLDRVHIHATY 84
Query: 47 HEWHYGTDRIKSKIEIDPATQMDAGIYECYADN 79
H+ S I ID + D G YEC A N
Sbjct: 85 HQ------HAASTISIDTLVEEDTGTYECRASN 111
>pdb|3QR2|A Chain A, Wild Type Cd147 Ig0 Domain
pdb|3QR2|B Chain B, Wild Type Cd147 Ig0 Domain
Length = 137
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 20/93 (21%)
Query: 1 MHSHFDYEYVLGHKIVFICMAKGKPRPHITWF-------------KDGVEL-YTHMYVNL 46
+ + + +G + C A G P P I W+ DG L H++
Sbjct: 25 VQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATY 84
Query: 47 HEWHYGTDRIKSKIEIDPATQMDAGIYECYADN 79
H+ S I ID + D G YEC A N
Sbjct: 85 HQ------HAASTISIDTLVEEDTGTYECRASN 111
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 33.5 bits (75), Expect = 0.028, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 15/93 (16%)
Query: 8 EYVLGHKIVFICMAKGKPRPHITWFK--DGVELYTHMYVNLHEWHYGTDRIKS---KIEI 62
E ++ H I +C A+G P P W+K +G + +N DR+K + I
Sbjct: 229 ELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLN--------DRVKQVSGTLII 280
Query: 63 DPATQMDAGIYECYADNMYNVDTRTFKTDFSIT 95
A D+G Y C +N +V + +T ++T
Sbjct: 281 KDAVVEDSGKYLCVVNN--SVGGESVETVLTVT 311
Score = 33.5 bits (75), Expect = 0.031, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 15/69 (21%)
Query: 11 LGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
G VF C G P ++W KDG + +S + I+ + D
Sbjct: 327 FGRPAVFTCQYTGNPIKTVSWMKDGKAI---------------GHSESVLRIESVKKEDK 371
Query: 71 GIYECYADN 79
G+Y+C+ N
Sbjct: 372 GMYQCFVRN 380
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 33.5 bits (75), Expect = 0.028, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 15/93 (16%)
Query: 8 EYVLGHKIVFICMAKGKPRPHITWFK--DGVELYTHMYVNLHEWHYGTDRIKS---KIEI 62
E ++ H I +C A+G P P W+K +G + +N DR+K + I
Sbjct: 223 ELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLN--------DRVKQVSGTLII 274
Query: 63 DPATQMDAGIYECYADNMYNVDTRTFKTDFSIT 95
A D+G Y C +N +V + +T ++T
Sbjct: 275 KDAVVEDSGKYLCVVNN--SVGGESVETVLTVT 305
Score = 33.5 bits (75), Expect = 0.031, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 15/69 (21%)
Query: 11 LGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
G VF C G P ++W KDG + +S + I+ + D
Sbjct: 321 FGRPAVFTCQYTGNPIKTVSWMKDGKAI---------------GHSESVLRIESVKKEDK 365
Query: 71 GIYECYADN 79
G+Y+C+ N
Sbjct: 366 GMYQCFVRN 374
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 33.5 bits (75), Expect = 0.028, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
G+ I C K P I W +D + L NL + G I +EI P + D G
Sbjct: 115 GNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMI---LEIAPTSDNDFG 171
Query: 72 IYECYADN 79
Y C A N
Sbjct: 172 RYNCTATN 179
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 14 KIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIK-----SKIEIDPATQM 68
++ +C A+G+P P ITW K V+ +T + + G +K S + I
Sbjct: 17 QVTLVCDAEGEPIPEITW-KRAVDGFT--FTEGDKSLDGRIEVKGQHGSSSLHIKDVKLS 73
Query: 69 DAGIYECYA 77
D+G Y+C A
Sbjct: 74 DSGRYDCEA 82
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 33.5 bits (75), Expect = 0.030, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 10/83 (12%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSK---IEIDPATQM 68
+ + F C A G P P I+W K+G E E G +++ + + ++
Sbjct: 138 ANTVRFRCPAAGNPTPSISWLKNGREFRG-------EHRIGGIKLRHQQWSLVMESVVPS 190
Query: 69 DAGIYECYADNMYNVDTRTFKTD 91
D G Y C +N + +T+ D
Sbjct: 191 DRGNYTCVVENKFGSIRQTYTLD 213
Score = 28.9 bits (63), Expect = 0.77, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 8/78 (10%)
Query: 10 VLGHKIVFICMAKGKPRPHITWFKD--------GVELYTHMYVNLHEWHYGTDRIKSKIE 61
VLG + F C +PHI W K G + ++ V TD+ +
Sbjct: 235 VLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLS 294
Query: 62 IDPATQMDAGIYECYADN 79
+ T DAG Y C A N
Sbjct: 295 LHNVTFEDAGEYTCLAGN 312
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 33.5 bits (75), Expect = 0.031, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 15/69 (21%)
Query: 11 LGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
G VF C G P ++W KDG + +S + I+ + D
Sbjct: 324 FGRPAVFTCQYTGNPIKTVSWMKDGKAI---------------GHSESVLRIESVKKEDK 368
Query: 71 GIYECYADN 79
G+Y+C+ N
Sbjct: 369 GMYQCFVRN 377
Score = 30.4 bits (67), Expect = 0.26, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 17/99 (17%)
Query: 2 HSHFDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELYTHMYVNLHEWHYGTDRIKS- 58
H D E L +CMA+ P P W+K +G + +N DR+K
Sbjct: 222 HQFIDVE--LASSYSLLCMAQSYPTPSFRWYKFIEGTTRKQAVVLN--------DRVKQV 271
Query: 59 --KIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFSIT 95
+ I A D+G Y C +N +V + +T ++T
Sbjct: 272 SGTLIIKDAVVEDSGKYLCVVNN--SVGGESVETVLTVT 308
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 33.5 bits (75), Expect = 0.032, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 8/65 (12%)
Query: 15 IVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYE 74
I F C GKP P + W K+G + Y + S + I + D G Y+
Sbjct: 330 IEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVG--------GSNLRILGVVKSDEGFYQ 381
Query: 75 CYADN 79
C A+N
Sbjct: 382 CVAEN 386
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 13/87 (14%)
Query: 6 DYEYVLGHKIVFIC-MAKGKPRPHITWFKDGVELYTHMYVNLHEWHYG-TDRIK----SK 59
D G + C KG P P + W KDGV L +L +G + R++
Sbjct: 117 DTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLD-----DLKAMSFGASSRVRIVDGGN 171
Query: 60 IEIDPATQMDAGIYECYADNMYNVDTR 86
+ I +D G Y+C A N+ V TR
Sbjct: 172 LLISNVEPIDEGNYKCIAQNL--VGTR 196
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 19 CMAKGKPRPHITWFKDGVELYTH 41
C +GKP P I WFKDG + T+
Sbjct: 31 CKVEGKPEPTIEWFKDGEPVSTN 53
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 13/87 (14%)
Query: 6 DYEYVLGHKIVFIC-MAKGKPRPHITWFKDGVELYTHMYVNLHEWHYG-TDRIK----SK 59
D G + C KG P P + W KDGV L +L +G + R++
Sbjct: 117 DTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLD-----DLKAMSFGASSRVRIVDGGN 171
Query: 60 IEIDPATQMDAGIYECYADNMYNVDTR 86
+ I +D G Y+C A N+ V TR
Sbjct: 172 LLISNVEPIDEGNYKCIAQNL--VGTR 196
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 19 CMAKGKPRPHITWFKDGVELYTH 41
C +GKP P I WFKDG + T+
Sbjct: 31 CKVEGKPEPTIEWFKDGEPVSTN 53
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 33.1 bits (74), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 28/80 (35%), Gaps = 14/80 (17%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELY---THMYVNLHEWHYGTDRIKSKIEI 62
D + G V C +G P P ITW +G + + + E H I
Sbjct: 20 DCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELH-----------I 68
Query: 63 DPATQMDAGIYECYADNMYN 82
A D G Y C A+N
Sbjct: 69 QDALPEDHGTYTCLAENALG 88
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 33.1 bits (74), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 17 FICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECY 76
F A G+PRP W KDG + L E D+ +EI D+G+Y C
Sbjct: 26 FAVKATGEPRPTAIWTKDGKAITQGGKYKLSE-----DKGGFFLEIHKTDTSDSGLYTCT 80
Query: 77 ADN 79
N
Sbjct: 81 VKN 83
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
F17r Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
G + C G+P P +TW G ++++ H + TD + + I +D Q D G
Sbjct: 22 GKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIEN--TDDLTTLIIMDVQKQ-DGG 78
Query: 72 IYECYADNMYNVDTRTF 88
+Y N + D+ T
Sbjct: 79 LYTLSLGNEFGSDSATV 95
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 33.1 bits (74), Expect = 0.045, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
G ++ C+A G P P I W+K G +L + + + I ++ D+G
Sbjct: 237 GMDLLLECIASGVPTPDIAWYKKGGDLPSD--------KAKFENFNKALRITNVSEEDSG 288
Query: 72 IYECYADN 79
Y C A N
Sbjct: 289 EYFCLASN 296
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 17 FICMAKGKPRPHITWFKDGVEL 38
+C A G P+P + W +G L
Sbjct: 332 LVCRANGNPKPTVQWMVNGEPL 353
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 32.7 bits (73), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 9/49 (18%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGV-------ELYTHMYVNLHEWHYGT 53
G +V C+A G P PH WFK+ + +LY YV+L H GT
Sbjct: 133 GSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLE--HQGT 179
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex
With Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 32.7 bits (73), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
G + C G+P P +TW G ++++ H + TD + + I +D Q D G
Sbjct: 20 GKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIEN--TDDLTTLIIMDVQKQ-DGG 76
Query: 72 IYECYADNMYNVDTRTFK 89
+Y N + D+ T
Sbjct: 77 LYTLSLGNEFGSDSATVN 94
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 32.7 bits (73), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 5 FDYEYVLGHKIVFICMAKGKPRPHITWFKD 34
D E V G F C +G P P + WFKD
Sbjct: 49 LDMEVVEGSAARFDCKVEGYPDPEVMWFKD 78
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 32.7 bits (73), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 10/81 (12%)
Query: 15 IVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSK---IEIDPATQMDAG 71
+ F C A G P P + W K+G E E G +++++ + ++ D G
Sbjct: 37 VKFRCPAGGNPMPTMRWLKNGKEFK-------QEHRIGGYKVRNQHWSLIMESVVPSDKG 89
Query: 72 IYECYADNMYNVDTRTFKTDF 92
Y C +N Y T+ D
Sbjct: 90 NYTCVVENEYGSINHTYHLDV 110
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 31/85 (36%), Gaps = 24/85 (28%)
Query: 10 VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIK-------SKIEI 62
V+G + F+C +PHI W K +V + YG D + S I
Sbjct: 131 VVGGDVEFVCKVYSDAQPHIQWIK---------HVEKNGSKYGPDGLPYLKVLKHSGINS 181
Query: 63 DPA--------TQMDAGIYECYADN 79
A T+ DAG Y C N
Sbjct: 182 SNAEVLALFNVTEADAGEYICKVSN 206
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 32.7 bits (73), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 10/81 (12%)
Query: 15 IVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSK---IEIDPATQMDAG 71
+ F C A G P P + W K+G E E G +++++ + ++ D G
Sbjct: 37 VKFRCPAGGNPMPTMRWLKNGKEFK-------QEHRIGGYKVRNQHWSLIMESVVPSDKG 89
Query: 72 IYECYADNMYNVDTRTFKTDF 92
Y C +N Y T+ D
Sbjct: 90 NYTCVVENEYGSINHTYHLDV 110
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 31/85 (36%), Gaps = 24/85 (28%)
Query: 10 VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIK-------SKIEI 62
V+G + F+C +PHI W K +V + YG D + S I
Sbjct: 131 VVGGDVEFVCKVYSDAQPHIQWIK---------HVEKNGSKYGPDGLPYLKVLKHSGINS 181
Query: 63 DPA--------TQMDAGIYECYADN 79
A T+ DAG Y C N
Sbjct: 182 SNAEVLALFNVTEADAGEYICKVSN 206
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 10/81 (12%)
Query: 15 IVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSK---IEIDPATQMDAG 71
+ F C A G P P + W K+G E E G +++++ + ++ D G
Sbjct: 31 VKFRCPAGGNPMPTMRWLKNGKEFK-------QEHRIGGYKVRNQHWSLIMESVVPSDKG 83
Query: 72 IYECYADNMYNVDTRTFKTDF 92
Y C +N Y T+ D
Sbjct: 84 NYTCVVENEYGSINHTYHLDV 104
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 32.7 bits (73), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 10/81 (12%)
Query: 15 IVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSK---IEIDPATQMDAG 71
+ F C A G P P + W K+G E E G +++++ + ++ D G
Sbjct: 30 VKFRCPAGGNPMPTMRWLKNGKEFK-------QEHRIGGYKVRNQHWSLIMESVVPSDKG 82
Query: 72 IYECYADNMYNVDTRTFKTDF 92
Y C +N Y T+ D
Sbjct: 83 NYTCVVENEYGSINHTYHLDV 103
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 32.7 bits (73), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 10/81 (12%)
Query: 15 IVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSK---IEIDPATQMDAG 71
+ F C A G P P + W K+G E E G +++++ + ++ D G
Sbjct: 29 VKFRCPAGGNPMPTMRWLKNGKEFK-------QEHRIGGYKVRNQHWSLIMESVVPSDKG 81
Query: 72 IYECYADNMYNVDTRTFKTDF 92
Y C +N Y T+ D
Sbjct: 82 NYTCVVENEYGSINHTYHLDV 102
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 8/83 (9%)
Query: 10 VLGHKIVFICMAKGKPRPHITWFKD--------GVELYTHMYVNLHEWHYGTDRIKSKIE 61
V+G + F+C +PHI W K G + ++ V TD+ +
Sbjct: 123 VVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLY 182
Query: 62 IDPATQMDAGIYECYADNMYNVD 84
I T DAG Y C A N +
Sbjct: 183 IRNVTFEDAGEYTCLAGNSIGIS 205
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 32.7 bits (73), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLH-EWHYGTDRIKSKIEIDPATQMDA 70
G F G P P ++WF+DG + T + + G ++K+ I T+ ++
Sbjct: 20 GSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDG----RAKLTIPAVTKANS 75
Query: 71 GIYECYADNMYNVDTRT 87
G Y A N T T
Sbjct: 76 GRYSLKATNGSGQATST 92
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 32.7 bits (73), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 10/81 (12%)
Query: 15 IVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSK---IEIDPATQMDAG 71
+ F C A G P P + W K+G E E G +++++ + ++ D G
Sbjct: 27 VKFRCPAGGNPMPTMRWLKNGKEFK-------QEHRIGGYKVRNQHWSLIMESVVPSDKG 79
Query: 72 IYECYADNMYNVDTRTFKTDF 92
Y C +N Y T+ D
Sbjct: 80 NYTCVVENEYGSINHTYHLDV 100
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 8/83 (9%)
Query: 10 VLGHKIVFICMAKGKPRPHITWFKD--------GVELYTHMYVNLHEWHYGTDRIKSKIE 61
V+G + F+C +PHI W K G + ++ V TD+ +
Sbjct: 121 VVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLY 180
Query: 62 IDPATQMDAGIYECYADNMYNVD 84
I T DAG Y C A N +
Sbjct: 181 IRNVTFEDAGEYTCLAGNSIGIS 203
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 32.7 bits (73), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 10/81 (12%)
Query: 15 IVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSK---IEIDPATQMDAG 71
+ F C A G P P + W K+G E E G +++++ + ++ D G
Sbjct: 28 VKFRCPAGGNPMPTMRWLKNGKEFK-------QEHRIGGYKVRNQHWSLIMESVVPSDKG 80
Query: 72 IYECYADNMYNVDTRTFKTDF 92
Y C +N Y T+ D
Sbjct: 81 NYTCVVENEYGSINHTYHLDV 101
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 8/83 (9%)
Query: 10 VLGHKIVFICMAKGKPRPHITWFKD--------GVELYTHMYVNLHEWHYGTDRIKSKIE 61
V+G + F+C +PHI W K G + ++ V TD+ +
Sbjct: 122 VVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLY 181
Query: 62 IDPATQMDAGIYECYADNMYNVD 84
I T DAG Y C A N +
Sbjct: 182 IRNVTFEDAGEYTCLAGNSIGIS 204
>pdb|3BFO|A Chain A, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|B Chain B, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|C Chain C, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|D Chain D, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 91
Score = 32.7 bits (73), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 9/49 (18%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGV-------ELYTHMYVNLHEWHYGT 53
G +V C+A G P PH WFK+ + +LY YV+L H GT
Sbjct: 18 GSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLE--HQGT 64
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLH-EWHYGTDRIKSKIEIDPATQMDA 70
G F G P P ++WF+DG + T + + G ++K+ I T+ ++
Sbjct: 20 GSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDG----RAKLTIPAVTKANS 75
Query: 71 GIYECYADNMYNVDTRT 87
G Y A N T T
Sbjct: 76 GRYSLKATNGSGQATST 92
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 10/81 (12%)
Query: 15 IVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSK---IEIDPATQMDAG 71
+ F C A G P P + W K+G E E G +++++ + ++ D G
Sbjct: 29 VKFRCPAGGNPMPTMRWLKNGKEFK-------QEHRIGGYKVRNQHWSLIMESVVPSDKG 81
Query: 72 IYECYADNMYNVDTRTFKTDF 92
Y C +N Y T+ D
Sbjct: 82 NYTCVVENEYGSINHTYHLDV 102
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 8/83 (9%)
Query: 10 VLGHKIVFICMAKGKPRPHITWFKD--------GVELYTHMYVNLHEWHYGTDRIKSKIE 61
V+G + F+C +PHI W K G + ++ V TD+ +
Sbjct: 123 VVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLY 182
Query: 62 IDPATQMDAGIYECYADNMYNVD 84
I T DAG Y C A N +
Sbjct: 183 IRNVTFEDAGEYTCLAGNSIGIS 205
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Query: 1 MHSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDG--VELYTHMYVNLHEWHY-GTDRIK 57
M + G + C +G P I W KDG V+ +Y+ + E H+ G +K
Sbjct: 6 MGAPVKLTVSQGQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLK 65
Query: 58 SKIEIDPATQMDAGIYECYADN 79
S + DAG Y C ++
Sbjct: 66 S------VERSDAGRYWCQVED 81
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 32.7 bits (73), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 10/81 (12%)
Query: 15 IVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSK---IEIDPATQMDAG 71
+ F C A G P P + W K+G E E G +++++ + ++ D G
Sbjct: 26 VKFRCPAGGNPMPTMRWLKNGKEFK-------QEHRIGGYKVRNQHWSLIMESVVPSDKG 78
Query: 72 IYECYADNMYNVDTRTFKTDF 92
Y C +N Y T+ D
Sbjct: 79 NYTCVVENEYGSINHTYHLDV 99
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From
Human Roundabout Homo1
Length = 118
Score = 32.7 bits (73), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
Query: 16 VFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYEC 75
V C+A G P P I W KDGV L + + + G +I+ A D G Y C
Sbjct: 27 VLSCVATGSPVPTILWRKDGV-LVSTQDSRIKQLENGVLQIRY------AKLGDTGRYTC 79
Query: 76 YAD 78
A
Sbjct: 80 IAS 82
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 32.3 bits (72), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 10/81 (12%)
Query: 15 IVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSK---IEIDPATQMDAG 71
+ F C A G P P + W K+G E E G +++++ + ++ D G
Sbjct: 29 VKFRCPAGGNPMPTMRWLKNGKEFK-------QEHRIGGYKVRNQHWSLIMESVVPSDKG 81
Query: 72 IYECYADNMYNVDTRTFKTDF 92
Y C +N Y T+ D
Sbjct: 82 NYTCVVENEYGSINHTYHLDV 102
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 8/83 (9%)
Query: 10 VLGHKIVFICMAKGKPRPHITWFKD--------GVELYTHMYVNLHEWHYGTDRIKSKIE 61
V+G + F+C +PHI W K G + ++ V TD+ +
Sbjct: 123 VVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLY 182
Query: 62 IDPATQMDAGIYECYADNMYNVD 84
I T DAG Y C A N +
Sbjct: 183 IRNVTFEDAGEYTCLAGNSIGIS 205
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 9/75 (12%)
Query: 10 VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
++G + C A G P P I W K + M G I+++ D
Sbjct: 126 LMGQNVTLECFALGNPVPDIRWRK----VLEPMPSTAEISTSGAVLKIFNIQLE-----D 176
Query: 70 AGIYECYADNMYNVD 84
GIYEC A+N+ D
Sbjct: 177 EGIYECEAENIRGKD 191
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 9/80 (11%)
Query: 8 EYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIK--SKIEIDPA 65
+ LG F C G ITW KD E+ +Y ++ + + +
Sbjct: 16 DLALGESGTFKCHVTGTAPIKITWAKDNREIRPG-------GNYKMTLVENTATLTVLKV 68
Query: 66 TQMDAGIYECYADNMYNVDT 85
T+ DAG Y CYA N+ D+
Sbjct: 69 TKGDAGQYTCYASNVAGKDS 88
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 8 EYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQ 67
E + G + C +G P ++W KD EL + + ++ T I I
Sbjct: 203 ETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTS-----IHILNVDS 257
Query: 68 MDAGIYECYADN 79
D G Y+C A N
Sbjct: 258 ADIGEYQCKASN 269
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 9/80 (11%)
Query: 8 EYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIK--SKIEIDPA 65
+ LG F C G ITW KD E+ +Y ++ + + +
Sbjct: 16 DLALGESGTFKCHVTGTAPIKITWAKDNREIRPG-------GNYKMTLVENTATLTVLKV 68
Query: 66 TQMDAGIYECYADNMYNVDT 85
T+ DAG Y CYA N+ D+
Sbjct: 69 TKGDAGQYTCYASNVAGKDS 88
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 8 EYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQ 67
E + G + C +G P ++W KD EL + + ++ T I I
Sbjct: 203 ETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTS-----IHILNVDS 257
Query: 68 MDAGIYECYADN 79
D G Y+C A N
Sbjct: 258 ADIGEYQCKASN 269
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 23 GKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN 82
GKP P ITW K G +L + N H T S + + + DAG Y A N +
Sbjct: 130 GKPDPVITWQK-GQDLIDN---NGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFG 185
Query: 83 VDTRTFKTDFS 93
+D +T + D +
Sbjct: 186 IDQKTVELDVA 196
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 17 FICMAKGKPRPHITWFKDGVELYT-HMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYEC 75
+C G P+P + W++ G E+ + + E+ G ++ I T DA +Y+
Sbjct: 24 LVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLI----IASVTDDDATVYQV 79
Query: 76 YADNM 80
A N
Sbjct: 80 RATNQ 84
>pdb|2VAJ|A Chain A, Crystal Structure Of Ncam2 Ig1 (I4122 Cell Unit)
Length = 93
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 8 EYVLGHKIVFICMAKGKPRPHITWFK-DGVELYTHMYVNLHEWHYGTDRIKSKIEIDPAT 66
E +G F C A G+P I W+ G ++ + V + + + ++S++ I A
Sbjct: 11 ELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQK-----EGVRSRLTIYNAN 64
Query: 67 QMDAGIYECYA 77
DAGIY C A
Sbjct: 65 IEDAGIYRCQA 75
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 23 GKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN 82
GKP P ITW K G +L + N H T S + + + DAG Y A N +
Sbjct: 128 GKPDPVITWQK-GQDLIDN---NGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFG 183
Query: 83 VDTRTFKTDFS 93
+D +T + D +
Sbjct: 184 IDQKTVELDVA 194
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 17 FICMAKGKPRPHITWFKDGVELYT-HMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYEC 75
+C G P+P + W++ G E+ + + E+ G ++ I T DA +Y+
Sbjct: 22 LVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLI----IASVTDDDATVYQV 77
Query: 76 YADNM 80
A N
Sbjct: 78 RATNQ 82
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 8 EYVLGHKIVFICMAKGKPRPHITWFK-DGVELYTHMYVNLHEWHYGTDRIKSKIEIDPAT 66
E +G F C A G+P I W+ G ++ + V + + + ++S++ I A
Sbjct: 13 ELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQK-----EGVRSRLTIYNAN 66
Query: 67 QMDAGIYECYA 77
DAGIY C A
Sbjct: 67 IEDAGIYRCQA 77
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 23 GKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN 82
GKP P ITW K G +L + N H T S + + + DAG Y A N +
Sbjct: 130 GKPDPVITWQK-GQDLIDN---NGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFG 185
Query: 83 VDTRTFKTDFS 93
+D +T + D +
Sbjct: 186 IDQKTVELDVA 196
Score = 29.6 bits (65), Expect = 0.40, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 17 FICMAKGKPRPHITWFKDGVELYTH-MYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYEC 75
+C G P+P + W++ G E+ + + E+ G ++ I T DA +Y+
Sbjct: 24 LVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY----HQLIIASVTDDDATVYQV 79
Query: 76 YADN 79
A N
Sbjct: 80 RATN 83
>pdb|4HWU|A Chain A, Crystal Structure Of The Ig-C2 Type 1 Domain From Mouse
Fibroblast Growth Factor Receptor 2 (Fgfr2)
[nysgrc-005912]
pdb|4HWU|B Chain B, Crystal Structure Of The Ig-C2 Type 1 Domain From Mouse
Fibroblast Growth Factor Receptor 2 (Fgfr2)
[nysgrc-005912]
Length = 95
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 7 YEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPAT 66
Y G + CM K I+W KDGV L + L I ++I AT
Sbjct: 11 YVVAPGESLELQCMLKDAAV--ISWTKDGVHLGPNNRTVL---------IGEYLQIKGAT 59
Query: 67 QMDAGIYECYADNMYNVDTRTFKTDFS 93
D+G+Y C A + +T F + +
Sbjct: 60 PRDSGLYACTAARTVDSETWIFMVNVT 86
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 5 FDYEYVLGHKIVFICMAKGKPRPHITWFKD 34
D + V G F C +G P P + WFKD
Sbjct: 49 LDMDVVEGSAARFDCKVEGYPDPEVMWFKD 78
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 10/81 (12%)
Query: 15 IVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSK---IEIDPATQMDAG 71
+ F C A G P P W K+G E E G +++++ + + D G
Sbjct: 29 VKFRCPAGGNPXPTXRWLKNGKEFK-------QEHRIGGYKVRNQHWSLIXESVVPSDKG 81
Query: 72 IYECYADNMYNVDTRTFKTDF 92
Y C +N Y T+ D
Sbjct: 82 NYTCVVENEYGSINHTYHLDV 102
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 8/83 (9%)
Query: 10 VLGHKIVFICMAKGKPRPHITWFKD--------GVELYTHMYVNLHEWHYGTDRIKSKIE 61
V+G + F+C +PHI W K G + ++ V TD+ +
Sbjct: 123 VVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLY 182
Query: 62 IDPATQMDAGIYECYADNMYNVD 84
I T DAG Y C A N +
Sbjct: 183 IRNVTFEDAGEYTCLAGNSIGIS 205
>pdb|2CR3|A Chain A, Solution Structure Of The First Ig-Like Domain Of Human
Fibroblast Growth Factor Receptor 1
Length = 99
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 9/66 (13%)
Query: 28 HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRT 87
I W +DGV+L + ++E+ + D+G+Y C + DT
Sbjct: 33 SINWLRDGVQLAESNRTRI---------TGEEVEVQDSVPADSGLYACVTSSPSGSDTTY 83
Query: 88 FKTDFS 93
F + S
Sbjct: 84 FSVNVS 89
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 31.2 bits (69), Expect = 0.16, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 7/69 (10%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYT-HMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
GH + F+C A G P P I W L + L + GT +E+ A D
Sbjct: 400 GHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGT------LEVRYAQVQDN 453
Query: 71 GIYECYADN 79
G Y C A N
Sbjct: 454 GTYLCIAAN 462
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 10/81 (12%)
Query: 15 IVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSK---IEIDPATQMDAG 71
+ F C A G P P W K+G E E G +++++ + + D G
Sbjct: 36 VKFRCPAGGNPXPTXRWLKNGKEFK-------QEHRIGGYKVRNQHWSLIXESVVPSDKG 88
Query: 72 IYECYADNMYNVDTRTFKTDF 92
Y C +N Y T+ D
Sbjct: 89 NYTCVVENEYGSINHTYHLDV 109
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 31/85 (36%), Gaps = 24/85 (28%)
Query: 10 VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIK-------SKIEI 62
V+G + F+C +PHI W K +V + YG D + S I
Sbjct: 130 VVGGDVEFVCKVYSDAQPHIQWIK---------HVEKNGSKYGPDGLPYLKVLKHSGINS 180
Query: 63 DPA--------TQMDAGIYECYADN 79
A T+ DAG Y C N
Sbjct: 181 SNAEVLALFNVTEADAGEYICKVSN 205
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 30.4 bits (67), Expect = 0.24, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 9/80 (11%)
Query: 8 EYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIK--SKIEIDPA 65
+ LG F C G ITW KD E+ +Y ++ + + +
Sbjct: 208 DLALGESGTFKCHVTGTAPIKITWAKDNREIRPG-------GNYKMTLVENTATLTVLKV 260
Query: 66 TQMDAGIYECYADNMYNVDT 85
T+ DAG Y CYA N+ D+
Sbjct: 261 TKGDAGQYTCYASNVAGKDS 280
Score = 29.6 bits (65), Expect = 0.40, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 8 EYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQ 67
E + G + C +G P ++W KD EL + ++ ++ + I I
Sbjct: 395 ETLKGADVHLECELQGTPPFQVSWHKDKRELRSG-----KKYKIMSENFLTSIHILNVDS 449
Query: 68 MDAGIYECYADNMYNVDT 85
D G Y+C A N DT
Sbjct: 450 ADIGEYQCKASNDVGSDT 467
Score = 29.3 bits (64), Expect = 0.61, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 8 EYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQ 67
E +G I C G P I W+K+ +L + ++ + + + + I+
Sbjct: 16 EAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRS---APAYKMQFKNN--VASLVINKVDH 70
Query: 68 MDAGIYECYADN 79
D G Y C A+N
Sbjct: 71 SDVGEYTCKAEN 82
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 31/88 (35%), Gaps = 5/88 (5%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
D LG + F C G ++W+KDG L + H + ++I
Sbjct: 110 DVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHN-----VATLQILQT 164
Query: 66 TQMDAGIYECYADNMYNVDTRTFKTDFS 93
Q G Y C A N + + K S
Sbjct: 165 DQSHVGQYNCSASNPLGTASSSAKLTLS 192
>pdb|2ENS|A Chain A, Solution Structure Of The Third Ig-Like Domain From
Human Advanced Glycosylation End Product-Specific
Receptor
Length = 96
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 26/83 (31%), Gaps = 14/83 (16%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
G + C +P P I W KDGV L EI P D G
Sbjct: 25 GGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPV-----------LILPEIGP---QDQG 70
Query: 72 IYECYADNMYNVDTRTFKTDFSI 94
Y C A + + + SI
Sbjct: 71 TYSCVATHSSHGPQESRAVSISI 93
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYT 40
G C A+G+P P I W+K G + T
Sbjct: 24 GEPATLNCKAEGRPTPTIEWYKGGERVET 52
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 30/81 (37%), Gaps = 15/81 (18%)
Query: 6 DYEYVLGHKIVFICMA-KGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIK---SKIE 61
D +G V C +G P P I+W KDG L +RI K+
Sbjct: 120 DVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDK-----------DERITIRGGKLM 168
Query: 62 IDPATQMDAGIYECYADNMYN 82
I + DAG Y C NM
Sbjct: 169 ITYTRKSDAGKYVCVGTNMVG 189
>pdb|2CKN|A Chain A, Nmr Structure Of The First Ig Module Of Mouse Fgfr1
Length = 95
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 9/66 (13%)
Query: 28 HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRT 87
I W +DGV+L + ++E+ + D+G+Y C + DT
Sbjct: 39 SINWLRDGVQLVESNRTRI---------TGEEVEVRDSIPADSGLYACVTSSPSGSDTTY 89
Query: 88 FKTDFS 93
F + S
Sbjct: 90 FSVNVS 95
>pdb|1GL4|B Chain B, Nidogen-1 G2PERLECAN IG3 COMPLEX
Length = 98
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 13/78 (16%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRI--KSKIEIDPATQMD 69
G + FIC AK K YT ++ LH + + + I D
Sbjct: 25 GADVTFICTAKSK-----------SPAYTLVWTRLHNGKLPSRAMDFNGILTIRNVQPSD 73
Query: 70 AGIYECYADNMYNVDTRT 87
AG Y C NM+ +D T
Sbjct: 74 AGTYVCTGSNMFAMDQGT 91
>pdb|2LE9|A Chain A, Ragec2-S100a13 Tetrameric Complex
pdb|2LE9|D Chain D, Ragec2-S100a13 Tetrameric Complex
Length = 93
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 26/83 (31%), Gaps = 14/83 (16%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
G + C +P P I W KDGV L EI P D G
Sbjct: 18 GGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPV-----------LILPEIGP---QDQG 63
Query: 72 IYECYADNMYNVDTRTFKTDFSI 94
Y C A + + + SI
Sbjct: 64 TYSCVATHSSHGPQESRAVSISI 86
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYT 40
G C A+G+P P I W+K G + T
Sbjct: 24 GEPATLNCKAEGRPTPTIEWYKGGERVET 52
>pdb|1I8L|A Chain A, Human B7-1CTLA-4 Co-Stimulatory Complex
pdb|1I8L|B Chain B, Human B7-1CTLA-4 Co-Stimulatory Complex
Length = 208
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 16/66 (24%)
Query: 6 DYEYVLGHKIVFICMAKGK-PRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDP 64
D+E + IC G P PH++W ++G EL + I + + DP
Sbjct: 115 DFEIPTSNIRRIICSTSGGFPEPHLSWLENGEEL---------------NAINTTVSQDP 159
Query: 65 ATQMDA 70
T++ A
Sbjct: 160 ETELYA 165
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 29.3 bits (64), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
G + C G P P ++W K+ L + NL + R + I+ + D+G
Sbjct: 132 GKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNL---KFEAGRT-AYFTINGVSTADSG 187
Query: 72 IYECYADNMYNVDTRTF 88
Y N Y +T F
Sbjct: 188 KYGLVVKNKYGSETSDF 204
>pdb|1DR9|A Chain A, Crystal Structure Of A Soluble Form Of B7-1 (Cd80)
Length = 201
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 16/66 (24%)
Query: 6 DYEYVLGHKIVFICMAKGK-PRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDP 64
D+E + IC G P PH++W ++G EL + I + + DP
Sbjct: 115 DFEIPTSNIRRIICSTSGGFPEPHLSWLENGEEL---------------NAINTTVSQDP 159
Query: 65 ATQMDA 70
T++ A
Sbjct: 160 ETELYA 165
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 29.3 bits (64), Expect = 0.66, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 30 TWFKDGVELYTHMYVNLHEWHYGT---DRIKSKIEIDPATQMDAGIYECYADNMY 81
TW ++ + T + + WH+G +R ++ + I A D+G++ CYA+N +
Sbjct: 245 TWKRENSQ--TKLQEKYNSWHHGDFNYER-QATLTISSARVNDSGVFMCYANNTF 296
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 23 GKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKI-EIDPATQMDAGIYECYADNMY 81
G P P ++W+ +G + + +LH+ + S I E+ A+ DAG Y C A N
Sbjct: 31 GLPAPDVSWYLNGRTVQSD---DLHKMIVSEKGLHSLIFEVVRAS--DAGAYACVAKNRA 85
Query: 82 NVDTRTFKTD 91
T T + D
Sbjct: 86 GEATFTVQLD 95
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 28.9 bits (63), Expect = 0.72, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 30 TWFKDGVELYTHMYVNLHEWHYGT---DRIKSKIEIDPATQMDAGIYECYADNMY 81
TW ++ + T + + WH+G +R ++ + I A D+G++ CYA+N +
Sbjct: 220 TWKRENSQ--TKLQEKYNSWHHGDFNYER-QATLTISSARVNDSGVFMCYANNTF 271
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
G + C G P P ++W K+ L + + NL ++ G + I+ + D+G
Sbjct: 237 GKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNL-KFEAGR---TAYFTINGVSTADSG 292
Query: 72 IYECYADNMYNVDTRTFKTDFSIT 95
Y N Y +T +DF+++
Sbjct: 293 KYGLVVKNKYGSET----SDFTVS 312
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 20 MAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYE 74
+A K HI W+KD E +++ E H D I + + I ++ DAGIYE
Sbjct: 30 VANIKKETHIVWYKDERE------ISVDEKHDFKDGICTLL-ITEFSKKDAGIYE 77
>pdb|4GUP|A Chain A, Structure Of Mhc-Class I Related Molecule Mr1
pdb|4GUP|C Chain C, Structure Of Mhc-Class I Related Molecule Mr1
Length = 271
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 16 VFICMAKG--KPRPHITWFKDGVELYTHM-YVNLHEWHYGTDRIKSKIEIDPATQMDAGI 72
C A G P ++TW K+G E+ + Y ++ GT + + IE+DP + + +
Sbjct: 198 ALFCKAHGFYPPEIYMTWMKNGEEIVQEIDYGDILPSGDGTYQAWASIELDPQS---SNL 254
Query: 73 YECYAD 78
Y C+ +
Sbjct: 255 YSCHVE 260
>pdb|1SY6|A Chain A, Crystal Structure Of Cd3gammaepsilon Heterodimer In
Complex With Okt3 Fab Fragment
Length = 204
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 15/69 (21%)
Query: 7 YEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPAT 66
Y+Y ++ C A+ K +ITWFKDG ++ + + +W+ G++ DP
Sbjct: 13 YDYQEDGSVLLTCDAEAK---NITWFKDG-KMIGFLTEDKKKWNLGSN------AKDP-- 60
Query: 67 QMDAGIYEC 75
G+Y+C
Sbjct: 61 ---RGMYQC 66
>pdb|3QP3|A Chain A, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|B Chain B, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|C Chain C, Crystal Structure Of Titin Domain M4, Tetragonal Form
Length = 103
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 5/68 (7%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
G FI + KP + W+ +GVEL + HY +EI D+G
Sbjct: 23 GQNTRFILNVQSKPTAEVKWYHNGVELQESSKI-----HYTNTSGVLTLEILDCHTDDSG 77
Query: 72 IYECYADN 79
Y N
Sbjct: 78 TYRAVCTN 85
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From
Human Roundabout Homolog 2
Length = 100
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 9/78 (11%)
Query: 1 MHSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTH-MYVNLHEWHYGTDRIKSK 59
+ + + + C A G P P I+W K+G + E GT +IK
Sbjct: 12 LQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQE--QGTLQIK-N 68
Query: 60 IEIDPATQMDAGIYECYA 77
+ I D G Y C A
Sbjct: 69 LRIS-----DTGTYTCVA 81
>pdb|3EJJ|X Chain X, Structure Of M-Csf Bound To The First Three Domains Of Fms
Length = 289
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 68 MDAGIYECYADNMYNVDTRTFKTDFSI 94
DAGIY C A N +V TRT +F +
Sbjct: 255 QDAGIYSCVASN--DVGTRTATMNFQV 279
>pdb|4EXP|X Chain X, Structure Of Mouse Interleukin-34 In Complex With Mouse
Fms
Length = 283
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 68 MDAGIYECYADNMYNVDTRTFKTDFSI 94
DAGIY C A N +V TRT +F +
Sbjct: 255 QDAGIYSCVASN--DVGTRTATMNFQV 279
>pdb|1L6Z|A Chain A, Crystal Structure Of Murine Ceacam1a[1,4]: A Coronavirus
Receptor And Cell Adhesion Molecule In The Cea Family
Length = 216
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 57 KSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFSITFD 97
S + IDP + DAG Y+C N +V R+ I FD
Sbjct: 162 NSILRIDPIKREDAGEYQCEISNPVSV-RRSNSIKLDIIFD 201
>pdb|3R4D|A Chain A, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
pdb|3R4D|C Chain C, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
Length = 208
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 57 KSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFSITFD 97
S + IDP + DAG Y+C N +V R+ I FD
Sbjct: 162 NSILRIDPIKREDAGEYQCEISNPVSV-RRSNSIKLDIIFD 201
>pdb|2PET|A Chain A, Lutheran Glycoprotein, N-Terminal Domains 1 And 2.
pdb|2PF6|A Chain A, Lutheran Glycoprotein, N-Terminal Domains 1 And 2
pdb|2PF6|B Chain B, Lutheran Glycoprotein, N-Terminal Domains 1 And 2
Length = 231
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 16 VFICMAK-GKPRPHITWFKDGVELYTHMYVN 45
+ C ++ G P P ITW+++G L + +N
Sbjct: 138 IATCNSRNGNPAPKITWYRNGQRLEVPVEMN 168
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 8 EYVLGHKIVFICMAKGKPRPHITWFKDGVEL 38
E +G ++ G P P I W+K+G+ L
Sbjct: 211 EATVGERVRIPAKYLGYPPPEIKWYKNGIPL 241
>pdb|2O1G|A Chain A, Natural Occurring Mutant Of Human Abo(H)
Galactosyltransferase: GtbM214T
pdb|2O1H|A Chain A, Naturally Occurring Mutation Of Humna Abo(H)
Galactosyltransferase In Complex With Udp: GtbM214T_UDP
Length = 297
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 30 TWFKD--GVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQ 67
T F+D GVE+ T ++ LH YG+ R E P +Q
Sbjct: 157 TEFRDHVGVEILTPLFGTLHPSFYGSSREAFTYERRPQSQ 196
>pdb|2O26|X Chain X, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|Y Chain Y, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|U Chain U, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|W Chain W, Structure Of A Class Iii Rtk Signaling Assembly
Length = 290
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 31 WFKDGVELYTHMYVNLHEWHYGT---DRIKSKIEIDPATQMDAGIYECYADNMY 81
W K + V + WH G +R + + I A D+G++ CYA+N +
Sbjct: 223 WLKMNPQPQHIAQVKHNSWHRGDFNYER-QETLTISSARVDDSGVFMCYANNTF 275
>pdb|2RCJ|C Chain C, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|D Chain D, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|G Chain G, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|H Chain H, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|K Chain K, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|L Chain L, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|O Chain O, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|P Chain P, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|S Chain S, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|T Chain T, Solution Structure Of Human Immunoglobulin M
Length = 523
Score = 25.8 bits (55), Expect = 7.1, Method: Composition-based stats.
Identities = 13/64 (20%), Positives = 28/64 (43%)
Query: 16 VFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYEC 75
V + ++ P+ W+ DGV+++ + + T R+ S + + +D Y+C
Sbjct: 342 VVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKC 401
Query: 76 YADN 79
N
Sbjct: 402 KVSN 405
>pdb|1MCO|H Chain H, Three-Dimensional Structure Of A Human Immunoglobulin With
A Hinge Deletion
Length = 428
Score = 25.4 bits (54), Expect = 7.4, Method: Composition-based stats.
Identities = 13/64 (20%), Positives = 28/64 (43%)
Query: 16 VFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYEC 75
V + ++ P+ W+ DGV+++ + + T R+ S + + +D Y+C
Sbjct: 247 VVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKC 306
Query: 76 YADN 79
N
Sbjct: 307 KVSN 310
>pdb|1OGM|X Chain X, Dex49a From Penicillium Minioluteum
pdb|1OGO|X Chain X, Dex49a From Penicillium Minioluteum Complex With
Isomaltose
Length = 574
Score = 25.4 bits (54), Expect = 7.5, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 34 DGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYAD 78
DG E+Y + V+ WH D I KI A+ A I++C+ D
Sbjct: 376 DGPEIYPNSVVHDVFWHVNDDAI--KIYYSGASVSRATIWKCHND 418
>pdb|1G1C|A Chain A, I1 Domain From Titin
pdb|1G1C|B Chain B, I1 Domain From Titin
Length = 99
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 23 GKPRPHITWFKDGVEL 38
GKP P W+K+GV++
Sbjct: 31 GKPDPECEWYKNGVKI 46
>pdb|2IG2|H Chain H, Dir Primaerstruktur Des Kristallisierbaren Monoklonalen
Immunoglobulins Igg1 Kol. Ii. Aminosaeuresequenz Der L-
Kette, Lambda-Typ, Subgruppe I (German)
Length = 455
Score = 25.4 bits (54), Expect = 8.1, Method: Composition-based stats.
Identities = 13/64 (20%), Positives = 28/64 (43%)
Query: 16 VFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYEC 75
V + ++ P+ W+ DGV+++ + + T R+ S + + +D Y+C
Sbjct: 271 VVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKC 330
Query: 76 YADN 79
N
Sbjct: 331 KVSN 334
>pdb|2Y23|A Chain A, Crystal Structure Of The Myomesin Domains My9-My11
Length = 312
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Query: 15 IVFIC-MAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIY 73
++ C +A K HI W+KD E +++ E H D I + + I ++ DAGIY
Sbjct: 239 VLLKCKVANIKKETHIVWYKDERE------ISVDEKHDFKDGICTLL-ITEFSKKDAGIY 291
Query: 74 ECYADNMYNVDTRTFK 89
E + D K
Sbjct: 292 EVILKDDRGKDKSRLK 307
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.465
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,391,135
Number of Sequences: 62578
Number of extensions: 137042
Number of successful extensions: 816
Number of sequences better than 100.0: 155
Number of HSP's better than 100.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 545
Number of HSP's gapped (non-prelim): 236
length of query: 97
length of database: 14,973,337
effective HSP length: 63
effective length of query: 34
effective length of database: 11,030,923
effective search space: 375051382
effective search space used: 375051382
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)