Query psy9150
Match_columns 97
No_of_seqs 128 out of 1711
Neff 12.1
Searched_HMMs 46136
Date Fri Aug 16 20:14:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9150.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9150hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05762 Ig8_MLCK Eighth immuno 99.9 6.8E-20 1.5E-24 87.7 11.8 89 3-96 6-94 (98)
2 cd04975 Ig4_SCFR_like Fourth i 99.9 9.6E-20 2.1E-24 87.5 11.9 90 4-93 10-100 (101)
3 cd05737 Ig_Myomesin_like_C C-t 99.9 9.8E-20 2.1E-24 86.4 11.3 86 3-92 7-92 (92)
4 cd05894 Ig_C5_MyBP-C C5 immuno 99.8 7.6E-19 1.6E-23 82.3 11.9 83 5-92 3-86 (86)
5 cd05851 Ig3_Contactin-1 Third 99.8 3.1E-19 6.7E-24 84.0 10.1 80 4-92 8-87 (88)
6 cd05859 Ig4_PDGFR-alpha Fourth 99.8 8.7E-19 1.9E-23 84.2 10.4 88 6-93 12-100 (101)
7 cd05745 Ig3_Peroxidasin Third 99.8 3.5E-19 7.5E-24 81.4 8.6 74 11-92 1-74 (74)
8 cd05855 Ig_TrkB_d5 Fifth domai 99.8 1.4E-18 3E-23 79.9 10.6 76 17-92 3-78 (79)
9 cd05735 Ig8_DSCAM Eight immuno 99.8 3.4E-18 7.5E-23 80.4 12.1 84 12-96 1-85 (88)
10 cd05891 Ig_M-protein_C C-termi 99.8 2.2E-18 4.8E-23 81.7 11.3 87 2-92 6-92 (92)
11 cd05728 Ig4_Contactin-2-like F 99.8 1.3E-18 2.8E-23 81.4 9.8 80 3-91 5-84 (85)
12 cd05730 Ig3_NCAM-1_like Third 99.8 3.7E-18 7.9E-23 81.4 11.5 83 5-94 11-94 (95)
13 cd05852 Ig5_Contactin-1 Fifth 99.8 9.6E-19 2.1E-23 79.6 8.9 73 12-92 1-73 (73)
14 cd04972 Ig_TrkABC_d4 Fourth do 99.8 3.9E-18 8.5E-23 80.6 11.1 84 3-91 6-89 (90)
15 cd05863 Ig2_VEGFR-3 Second imm 99.8 8.5E-19 1.8E-23 78.3 8.1 66 15-93 1-66 (67)
16 cd05747 Ig5_Titin_like M5, fif 99.8 4.8E-18 1E-22 80.6 11.1 82 4-90 10-91 (92)
17 cd05857 Ig2_FGFR Second immuno 99.8 1.1E-17 2.5E-22 78.2 11.7 83 6-92 3-85 (85)
18 cd05892 Ig_Myotilin_C C-termin 99.8 3.5E-18 7.6E-23 78.1 9.5 74 15-92 1-75 (75)
19 cd05867 Ig4_L1-CAM_like Fourth 99.8 5.2E-18 1.1E-22 77.8 10.1 74 12-92 1-75 (76)
20 cd05748 Ig_Titin_like Immunogl 99.8 7.2E-18 1.6E-22 77.0 10.1 73 15-92 2-74 (74)
21 cd05864 Ig2_VEGFR-2 Second imm 99.8 1.7E-18 3.7E-23 78.1 7.8 68 16-93 2-69 (70)
22 cd04976 Ig2_VEGFR Second immun 99.8 2.5E-18 5.4E-23 77.9 8.2 70 15-93 1-70 (71)
23 cd05732 Ig5_NCAM-1_like Fifth 99.8 1.3E-17 2.8E-22 79.6 10.9 88 5-92 9-96 (96)
24 cd05865 Ig1_NCAM-1 First immun 99.8 1.3E-17 2.8E-22 79.5 10.8 85 4-92 7-95 (96)
25 cd04971 Ig_TrKABC_d5 Fifth dom 99.8 1.9E-17 4E-22 76.7 10.8 76 17-92 3-80 (81)
26 cd04968 Ig3_Contactin_like Thi 99.8 1.7E-17 3.6E-22 78.1 10.7 80 4-92 8-87 (88)
27 cd05869 Ig5_NCAM-1 Fifth immun 99.8 1.7E-17 3.6E-22 79.4 10.7 85 8-92 13-97 (97)
28 PF07679 I-set: Immunoglobulin 99.8 1.4E-17 3.1E-22 78.5 10.0 85 3-92 6-90 (90)
29 cd05723 Ig4_Neogenin Fourth im 99.8 1.4E-17 3E-22 75.5 9.2 70 15-92 2-71 (71)
30 cd05893 Ig_Palladin_C C-termin 99.8 1.5E-17 3.3E-22 76.0 9.4 74 15-92 1-75 (75)
31 cd05856 Ig2_FGFRL1-like Second 99.8 1.2E-17 2.6E-22 77.6 9.1 80 6-92 3-82 (82)
32 cd05744 Ig_Myotilin_C_like Imm 99.8 2.6E-17 5.6E-22 75.3 10.0 74 15-92 1-75 (75)
33 cd05868 Ig4_NrCAM Fourth immun 99.8 2.1E-17 4.6E-22 75.8 9.5 75 12-92 1-75 (76)
34 cd04973 Ig1_FGFR First immunog 99.8 2.2E-17 4.7E-22 76.3 9.4 77 5-91 2-78 (79)
35 cd04969 Ig5_Contactin_like Fif 99.8 1.5E-17 3.3E-22 75.7 8.7 73 12-92 1-73 (73)
36 cd05743 Ig_Perlecan_D2_like Im 99.8 2.1E-17 4.5E-22 76.2 9.2 77 12-93 1-77 (78)
37 cd05870 Ig5_NCAM-2 Fifth immun 99.8 3E-17 6.5E-22 78.7 10.0 83 5-92 9-98 (98)
38 cd04978 Ig4_L1-NrCAM_like Four 99.8 3.4E-17 7.4E-22 75.1 9.5 75 12-92 1-75 (76)
39 cd05760 Ig2_PTK7 Second immuno 99.8 5.7E-17 1.2E-21 74.5 9.2 74 15-95 1-75 (77)
40 cd05739 Ig3_RPTP_IIa_LAR_like 99.7 7.7E-17 1.7E-21 72.6 9.1 68 12-90 1-68 (69)
41 cd05876 Ig3_L1-CAM Third immun 99.7 3.4E-17 7.4E-22 74.2 7.8 70 15-92 1-70 (71)
42 cd05746 Ig4_Peroxidasin Fourth 99.7 2.5E-17 5.4E-22 74.3 7.3 68 15-90 1-68 (69)
43 cd05773 Ig8_hNephrin_like Eigh 99.7 2.9E-16 6.3E-21 76.5 11.5 85 11-96 22-108 (109)
44 cd05725 Ig3_Robo Third immunog 99.7 1.1E-16 2.4E-21 72.1 8.3 68 15-91 1-68 (69)
45 cd05726 Ig4_Robo Fhird immunog 99.7 2.2E-16 4.8E-21 74.6 9.5 76 12-95 1-84 (90)
46 cd05764 Ig_2 Subgroup of the i 99.7 2.8E-16 6.1E-21 71.7 9.4 73 12-92 1-74 (74)
47 cd05866 Ig1_NCAM-2 First immun 99.7 4.3E-16 9.4E-21 73.7 10.2 83 3-91 6-90 (92)
48 cd05740 Ig_CEACAM_D4 Fourth im 99.7 3.6E-16 7.8E-21 73.9 9.9 79 5-92 11-90 (91)
49 cd07693 Ig1_Robo First immunog 99.7 1.4E-15 3E-20 72.9 11.2 89 4-92 8-99 (100)
50 cd05758 Ig5_KIRREL3-like Fifth 99.7 2.9E-15 6.3E-20 71.8 12.3 85 5-90 9-97 (98)
51 cd07702 Ig2_VEGFR-1 Second imm 99.7 2.1E-16 4.5E-21 71.5 7.7 68 16-92 2-70 (72)
52 cd05763 Ig_1 Subgroup of the i 99.7 2.7E-16 5.8E-21 72.0 8.1 71 15-92 1-74 (75)
53 cd05724 Ig2_Robo Second immuno 99.7 9.3E-16 2E-20 71.8 10.0 80 3-90 2-84 (86)
54 cd05854 Ig6_Contactin-2 Sixth 99.7 1.9E-15 4.1E-20 70.7 11.0 78 13-94 1-83 (85)
55 cd05731 Ig3_L1-CAM_like Third 99.7 3.4E-16 7.4E-21 70.8 7.8 70 15-92 1-70 (71)
56 cd05742 Ig1_VEGFR_like First i 99.7 1.4E-15 3.1E-20 71.0 9.8 81 12-92 1-83 (84)
57 cd05858 Ig3_FGFR-2 Third immun 99.7 1.8E-15 4E-20 71.4 10.1 81 12-92 1-89 (90)
58 cd05848 Ig1_Contactin-5 First 99.7 1.7E-15 3.7E-20 72.1 9.9 68 11-85 18-86 (94)
59 cd04977 Ig1_NCAM-1_like First 99.7 4.3E-15 9.3E-20 70.4 10.5 83 4-91 7-91 (92)
60 cd05750 Ig_Pro_neuregulin Immu 99.7 1.6E-15 3.4E-20 69.3 8.7 72 15-88 1-73 (75)
61 cd04974 Ig3_FGFR Third immunog 99.7 2.6E-15 5.6E-20 70.9 9.6 81 12-92 1-89 (90)
62 cd05738 Ig2_RPTP_IIa_LAR_like 99.7 2.1E-15 4.5E-20 68.8 8.5 69 15-91 1-72 (74)
63 cd05729 Ig2_FGFR_like Second i 99.7 1.1E-14 2.4E-19 67.9 11.1 82 7-92 4-85 (85)
64 cd05756 Ig1_IL1R_like First im 99.7 1.9E-15 4.2E-20 71.8 8.5 81 5-92 7-94 (94)
65 cd05850 Ig1_Contactin-2 First 99.7 1.2E-14 2.5E-19 69.2 11.2 80 4-90 8-92 (94)
66 cd05736 Ig2_Follistatin_like S 99.7 2.2E-15 4.8E-20 69.1 8.1 74 15-93 1-74 (76)
67 cd05765 Ig_3 Subgroup of the i 99.7 1E-15 2.3E-20 70.9 6.9 77 12-92 1-81 (81)
68 cd05722 Ig1_Neogenin First imm 99.7 1.6E-14 3.5E-19 68.8 10.5 82 4-91 6-94 (95)
69 cd05749 Ig2_Tyro3_like Second 99.6 5.7E-15 1.2E-19 68.3 8.6 71 3-86 4-75 (81)
70 cd05861 Ig1_PDGFR-alphabeta Fr 99.6 6.4E-14 1.4E-18 65.3 12.0 80 12-92 1-82 (84)
71 cd05849 Ig1_Contactin-1 First 99.6 1.2E-14 2.6E-19 69.0 9.5 65 13-86 20-86 (93)
72 cd04970 Ig6_Contactin_like Six 99.6 2.2E-14 4.7E-19 67.1 9.8 79 14-93 2-82 (85)
73 cd04979 Ig_Semaphorin_C Immuno 99.6 6.3E-14 1.4E-18 66.0 10.0 82 3-92 2-86 (89)
74 cd05853 Ig6_Contactin-4 Sixth 99.6 2.7E-14 5.8E-19 66.5 8.5 79 14-94 2-83 (85)
75 cd05754 Ig3_Perlecan_like Thir 99.6 3.1E-14 6.8E-19 66.5 8.4 77 3-90 7-84 (85)
76 cd05733 Ig6_L1-CAM_like Sixth 99.6 1.2E-14 2.6E-19 66.8 6.6 67 15-86 1-71 (77)
77 cd04967 Ig1_Contactin First Ig 99.6 6.7E-14 1.5E-18 66.2 9.3 68 12-86 19-87 (91)
78 cd05875 Ig6_hNeurofascin_like 99.6 6.2E-14 1.4E-18 64.4 8.3 65 15-86 1-71 (77)
79 cd05734 Ig7_DSCAM Seventh immu 99.6 1.6E-14 3.4E-19 66.7 6.2 69 15-91 1-78 (79)
80 cd05757 Ig2_IL1R_like Second i 99.6 1.6E-13 3.5E-18 64.9 9.4 79 5-92 3-86 (92)
81 cd05874 Ig6_NrCAM Sixth immuno 99.6 6.4E-14 1.4E-18 64.3 7.9 67 15-86 1-71 (77)
82 cd05873 Ig_Sema4D_like Immunog 99.6 2.9E-13 6.4E-18 63.3 9.9 68 4-81 3-71 (87)
83 cd05898 Ig5_KIRREL3 Fifth immu 99.6 1E-12 2.2E-17 62.7 11.6 86 4-90 8-97 (98)
84 cd05882 Ig1_Necl-1 First (N-te 99.6 4.1E-13 8.8E-18 63.9 10.3 71 5-79 5-83 (95)
85 cd05895 Ig_Pro_neuregulin-1 Im 99.5 2.3E-13 5E-18 62.3 8.6 71 15-88 1-74 (76)
86 cd05860 Ig4_SCFR Fourth immuno 99.5 1.7E-12 3.6E-17 61.9 11.5 89 5-93 11-100 (101)
87 cd07701 Ig1_Necl-3 First (N-te 99.5 1.2E-12 2.6E-17 62.4 10.0 74 3-80 3-84 (95)
88 cd05752 Ig1_FcgammaR_like Frst 99.5 6.7E-13 1.5E-17 61.1 7.9 62 3-80 6-68 (78)
89 KOG3513|consensus 99.5 7.6E-13 1.7E-17 82.9 10.3 84 3-95 337-423 (1051)
90 smart00408 IGc2 Immunoglobulin 99.5 2.2E-12 4.9E-17 56.4 8.0 63 11-82 1-63 (63)
91 cd05727 Ig2_Contactin-2-like S 99.5 7.7E-13 1.7E-17 62.8 6.4 75 3-84 9-86 (96)
92 cd05871 Ig_Semaphorin_classIII 99.4 1.5E-11 3.3E-16 58.1 10.3 78 5-92 4-88 (91)
93 smart00409 IG Immunoglobulin. 99.4 5.7E-11 1.2E-15 54.8 12.2 83 5-92 2-85 (86)
94 smart00410 IG_like Immunoglobu 99.4 5.7E-11 1.2E-15 54.8 12.2 83 5-92 2-85 (86)
95 KOG4194|consensus 99.4 7E-13 1.5E-17 79.5 6.6 86 3-95 618-706 (873)
96 PHA02826 IL-1 receptor-like pr 99.4 9.5E-12 2E-16 67.6 10.2 69 6-81 138-211 (227)
97 cd05753 Ig2_FcgammaR_like Seco 99.4 3.4E-12 7.4E-17 59.4 7.3 71 7-90 9-81 (83)
98 KOG3513|consensus 99.4 3.8E-12 8.2E-17 79.9 9.4 79 6-93 250-329 (1051)
99 cd07690 Ig1_CD4 First immunogl 99.4 8.6E-12 1.9E-16 59.2 7.7 76 7-84 2-91 (94)
100 cd05759 Ig2_KIRREL3-like Secon 99.4 2.5E-11 5.4E-16 56.3 9.2 72 15-86 2-74 (82)
101 cd05862 Ig1_VEGFR First immuno 99.4 2.2E-11 4.8E-16 57.0 8.9 81 12-92 1-84 (86)
102 cd05872 Ig_Sema4B_like Immunog 99.4 4.1E-11 8.8E-16 55.8 9.1 82 4-96 3-84 (85)
103 cd05717 Ig1_Necl-1-3_like Firs 99.4 1.1E-10 2.4E-15 55.6 10.6 74 4-81 4-85 (95)
104 cd05845 Ig2_L1-CAM_like Second 99.3 1.3E-11 2.9E-16 58.5 6.7 74 3-84 9-85 (95)
105 cd05885 Ig2_Necl-4 Second immu 99.3 6E-11 1.3E-15 54.6 8.2 67 15-84 2-69 (80)
106 PF00047 ig: Immunoglobulin do 99.3 5.4E-11 1.2E-15 52.6 7.8 63 12-77 1-64 (64)
107 PF13895 Ig_2: Immunoglobulin 99.3 6.9E-11 1.5E-15 54.3 8.0 70 7-91 9-79 (80)
108 cd05896 Ig1_IL1RAPL-1_like Fir 99.3 1.6E-10 3.4E-15 55.4 8.8 80 5-91 8-103 (104)
109 KOG4221|consensus 99.3 5.4E-11 1.2E-15 75.6 9.0 82 4-92 244-325 (1381)
110 PHA02785 IL-beta-binding prote 99.3 3.1E-10 6.7E-15 64.8 11.3 81 5-85 228-319 (326)
111 cd05879 Ig_P0 Immunoglobulin ( 99.2 1.7E-09 3.7E-14 53.3 10.5 86 4-90 5-112 (116)
112 cd05897 Ig2_IL1R2_like Second 99.2 6.5E-10 1.4E-14 52.8 8.3 72 6-84 4-81 (95)
113 PHA02785 IL-beta-binding prote 99.2 4.3E-10 9.2E-15 64.3 7.6 76 8-93 37-117 (326)
114 cd05714 Ig_CSPGs_LP Immunoglob 99.1 4.5E-09 9.7E-14 51.0 10.2 84 11-94 1-104 (106)
115 cd05881 Ig1_Necl-2 First (N-te 99.1 6.4E-09 1.4E-13 49.5 9.5 73 3-79 3-83 (95)
116 PHA02826 IL-1 receptor-like pr 99.1 1.7E-09 3.6E-14 59.0 8.2 88 5-92 30-132 (227)
117 cd04983 IgV_TCR_alpha_like Imm 99.1 5.1E-09 1.1E-13 50.9 9.0 77 2-81 3-93 (109)
118 cd05883 Ig2_Necl-2 Second immu 99.1 2.9E-08 6.2E-13 46.0 10.2 67 15-83 2-69 (82)
119 cd05877 Ig_LP_like Immunoglobu 99.0 2E-08 4.4E-13 48.7 10.0 84 11-94 1-104 (106)
120 cd05761 Ig2_Necl-1-4_like Seco 99.0 1.7E-08 3.8E-13 46.8 8.8 69 15-84 2-71 (82)
121 cd05900 Ig_Aggrecan Immunoglob 99.0 3E-08 6.5E-13 48.6 9.7 83 11-93 1-109 (112)
122 cd05713 Ig_MOG_like Immunoglob 99.0 3.5E-08 7.5E-13 47.3 9.5 36 57-92 64-99 (100)
123 PF13927 Ig_3: Immunoglobulin 99.0 2.1E-08 4.4E-13 45.3 8.3 58 14-79 17-75 (75)
124 cd00098 IgC Immunoglobulin Con 99.0 9.8E-09 2.1E-13 48.7 7.1 74 10-83 11-87 (95)
125 cd05878 Ig_Aggrecan_like Immun 99.0 1.1E-07 2.3E-12 46.6 10.8 84 11-94 1-108 (110)
126 cd05751 Ig1_LILRB1_like First 99.0 9.4E-09 2E-13 48.6 6.5 66 6-80 10-75 (91)
127 cd07705 Ig2_Necl-1 Second immu 98.9 3.4E-08 7.4E-13 45.9 8.1 69 15-84 2-72 (83)
128 cd04980 IgV_L_kappa Immunoglob 98.9 1.1E-08 2.3E-13 49.7 6.7 78 3-80 6-93 (106)
129 cd05899 IgV_TCR_beta Immunoglo 98.9 2E-08 4.3E-13 49.0 7.6 79 2-81 3-95 (110)
130 cd05880 Ig_EVA1 Immunoglobulin 98.9 7.3E-08 1.6E-12 47.5 9.3 80 4-83 5-104 (115)
131 cd05718 Ig1_PVR_like First imm 98.9 6.8E-08 1.5E-12 46.1 9.0 78 13-92 1-97 (98)
132 cd05884 Ig2_Necl-3 Second immu 98.9 5.1E-08 1.1E-12 45.4 8.0 69 15-83 2-71 (83)
133 cd05902 Ig_Neurocan Immunoglob 98.9 1.9E-07 4E-12 45.7 10.2 38 56-93 70-107 (110)
134 cd05715 Ig_P0-like Immunoglobu 98.9 1.8E-07 3.9E-12 46.1 9.8 80 4-83 5-105 (116)
135 cd00099 IgV Immunoglobulin var 98.9 4.1E-08 8.9E-13 47.4 7.4 73 7-82 1-91 (105)
136 cd07694 Ig2_CD4 Second immunog 98.9 1.4E-07 3.1E-12 43.9 8.5 77 6-95 8-86 (88)
137 cd05775 Ig_SLAM-CD84_like_N N- 98.9 5.2E-08 1.1E-12 46.6 7.2 83 10-92 2-96 (97)
138 cd05741 Ig_CEACAM_D1_like Firs 98.8 5.3E-08 1.2E-12 45.9 7.1 78 12-90 1-90 (92)
139 cd04982 IgV_TCR_gamma Immunogl 98.8 1.3E-07 2.8E-12 46.6 8.1 75 2-79 3-98 (116)
140 cd05888 Ig1_Nectin-4_like Frst 98.8 3.4E-07 7.4E-12 44.0 9.1 37 56-92 62-99 (100)
141 cd04984 IgV_L_lambda Immunoglo 98.8 1E-07 2.2E-12 45.6 7.1 73 8-80 2-85 (98)
142 cd05774 Ig_CEACAM_D1 First imm 98.8 1.9E-07 4.1E-12 45.3 7.7 85 6-90 7-103 (105)
143 cd05846 Ig1_MRC-OX-2_like Firs 98.8 5.3E-07 1.2E-11 43.1 9.0 81 12-92 1-96 (97)
144 cd05901 Ig_Versican Immunoglob 98.8 1.5E-06 3.3E-11 42.8 10.6 37 57-93 78-114 (117)
145 KOG4194|consensus 98.8 6E-08 1.3E-12 59.1 6.6 83 3-92 712-795 (873)
146 KOG4221|consensus 98.7 1.5E-07 3.3E-12 60.8 8.6 72 5-84 148-219 (1381)
147 PF07686 V-set: Immunoglobulin 98.7 3.3E-07 7.2E-12 44.5 8.1 78 3-80 7-101 (114)
148 PF08205 C2-set_2: CD80-like C 98.7 3.3E-07 7.2E-12 43.0 7.5 73 12-84 14-87 (89)
149 cd05711 Ig_FcalphaRI Immunoglo 98.7 4.2E-07 9.2E-12 43.2 7.9 67 6-78 9-75 (94)
150 cd00096 Ig Immunoglobulin doma 98.7 1.1E-06 2.4E-11 38.5 9.0 65 16-81 2-66 (74)
151 PHA02987 Ig domain OX-2-like p 98.7 8.6E-07 1.9E-11 46.7 9.2 88 6-93 24-122 (189)
152 cd05886 Ig1_Nectin-1_like Firs 98.7 2.2E-06 4.8E-11 41.2 10.1 36 57-92 62-98 (99)
153 KOG4222|consensus 98.6 1.7E-07 3.8E-12 60.2 6.4 73 5-85 139-214 (1281)
154 cd05716 Ig_pIgR Immunoglobulin 98.6 2.2E-06 4.8E-11 40.9 8.7 72 7-81 2-87 (98)
155 smart00407 IGc1 Immunoglobulin 98.6 1.8E-06 3.9E-11 39.4 8.0 67 15-81 2-71 (75)
156 cd05772 IgC_SIRP Signal-regula 98.6 3.2E-06 7E-11 41.4 8.9 73 9-82 18-93 (111)
157 cd05755 Ig2_ICAM-1_like Second 98.6 2.9E-06 6.3E-11 40.8 8.0 74 8-84 12-88 (100)
158 cd07703 Ig2_Nectin-2_like Seco 98.5 5.8E-06 1.3E-10 39.4 8.9 77 13-92 16-93 (95)
159 cd05712 Ig_Siglec_N Immunoglob 98.5 9.6E-06 2.1E-10 40.2 10.1 77 3-80 5-102 (119)
160 cd07700 IgV_CD8_beta Immunoglo 98.5 3.2E-06 7E-11 41.1 8.1 72 8-79 2-93 (107)
161 cd05887 Ig1_Nectin-3_like Firs 98.5 7.1E-06 1.5E-10 39.2 9.0 36 57-92 59-95 (96)
162 cd05847 IgC_CH2_IgE CH2 domain 98.5 1.2E-06 2.6E-11 41.7 6.2 75 11-85 13-90 (94)
163 cd07706 IgV_TCR_delta Immunogl 98.5 2.3E-06 4.9E-11 42.2 7.3 75 3-80 5-94 (116)
164 KOG4222|consensus 98.5 2.5E-07 5.3E-12 59.6 4.4 82 3-92 231-312 (1281)
165 cd05719 Ig2_PVR_like Second im 98.5 1.1E-05 2.4E-10 38.5 8.7 75 13-90 16-91 (95)
166 cd07698 IgC_MHC_I_alpha3 Class 98.4 8.5E-06 1.9E-10 38.6 8.2 69 12-83 14-85 (93)
167 cd05720 Ig_CD8_alpha Immunoglo 98.4 3.6E-06 7.9E-11 40.7 6.7 71 9-79 3-90 (104)
168 cd05768 IgC_CH4 CH4 domain (fo 98.4 1.1E-06 2.3E-11 42.5 4.7 73 11-83 15-93 (102)
169 cd05771 IgC_Tapasin_R Tapasin- 98.4 1.4E-05 3.1E-10 40.6 8.9 72 11-82 52-132 (139)
170 cd07696 IgC_CH3 CH3 domain (th 98.4 2.5E-06 5.5E-11 40.7 5.6 76 9-84 11-89 (96)
171 cd05770 IgC_beta2m Class I maj 98.4 2.2E-05 4.8E-10 37.3 8.7 65 12-82 15-84 (93)
172 cd07699 IgC_L Immunoglobulin C 98.4 6.1E-06 1.3E-10 39.7 6.5 72 11-82 16-90 (100)
173 cd05766 IgC_MHC_II_beta Class 98.3 3.1E-05 6.7E-10 36.9 9.2 70 11-83 13-85 (94)
174 cd05889 Ig1_DNAM-1_like First 98.3 2.8E-05 6.1E-10 37.2 8.3 34 57-90 59-93 (96)
175 PF07654 C1-set: Immunoglobuli 98.3 3.1E-05 6.6E-10 35.9 8.3 68 12-83 8-79 (83)
176 cd05769 IgC_TCR_beta T cell re 98.3 6.9E-06 1.5E-10 40.5 6.1 78 11-88 17-99 (115)
177 cd05767 IgC_MHC_II_alpha Class 98.3 2.9E-05 6.3E-10 37.0 7.8 66 12-82 15-85 (94)
178 PHA03376 BARF1; Provisional 98.3 6.6E-05 1.4E-09 40.0 9.4 76 6-82 20-111 (221)
179 cd04981 IgV_H Immunoglobulin ( 98.3 2.1E-05 4.6E-10 38.9 7.4 76 4-79 4-97 (117)
180 cd07697 IgC_TCR_gamma T cell r 98.2 5.3E-05 1.1E-09 36.2 7.3 66 12-81 16-85 (96)
181 smart00406 IGv Immunoglobulin 98.0 7.8E-05 1.7E-09 34.0 6.1 20 57-76 61-80 (81)
182 cd04985 IgC_CH1 CH1 domain (fi 98.0 0.00019 4.1E-09 34.3 7.1 70 11-81 15-87 (95)
183 cd07704 Ig2_Nectin-3-4_like Se 97.9 0.00036 7.7E-09 33.5 8.3 76 5-83 9-86 (97)
184 cd05771 IgC_Tapasin_R Tapasin- 97.8 7.3E-05 1.6E-09 38.0 4.7 35 59-93 2-36 (139)
185 cd04986 IgC_CH2 CH2 domain (se 97.7 0.00033 7.1E-09 33.7 5.5 70 11-82 18-90 (99)
186 cd07691 Ig_CD3_gamma_delta Imm 97.7 0.00074 1.6E-08 30.2 6.6 49 12-79 6-54 (69)
187 cd07692 Ig_CD3_epsilon Immunog 97.7 0.00056 1.2E-08 30.3 5.6 52 9-79 4-55 (65)
188 PHA02633 hypothetical protein; 97.6 0.00061 1.3E-08 29.8 5.1 36 58-93 18-53 (63)
189 PF08204 V-set_CD47: CD47 immu 97.3 0.00054 1.2E-08 34.5 3.5 83 11-94 26-121 (130)
190 PF07354 Sp38: Zona-pellucida- 96.9 0.0089 1.9E-07 33.7 6.1 49 25-81 11-60 (271)
191 KOG1480|consensus 96.7 0.001 2.2E-08 42.4 1.4 69 8-84 140-209 (909)
192 cd05721 IgV_CTLA-4 Immunoglobu 96.6 0.03 6.5E-07 27.8 7.2 72 6-78 7-94 (115)
193 PHA03042 CD47-like protein; Pr 96.5 0.065 1.4E-06 30.5 8.3 71 11-93 30-105 (286)
194 KOG3515|consensus 96.4 0.0026 5.7E-08 40.6 2.2 68 6-83 16-84 (741)
195 PF11465 Receptor_2B4: Natural 96.3 0.044 9.5E-07 26.8 6.2 35 57-91 70-105 (108)
196 KOG4597|consensus 96.3 0.011 2.3E-07 36.1 4.1 82 9-93 208-292 (560)
197 KOG3515|consensus 95.9 0.05 1.1E-06 35.2 5.9 72 9-80 109-185 (741)
198 PHA02914 Immunoglobulin-like d 95.7 0.17 3.7E-06 30.6 7.0 79 3-81 270-369 (500)
199 cd07689 Ig2_VCAM-1 Second immu 95.7 0.095 2.1E-06 25.4 6.6 74 8-82 11-87 (99)
200 cd05890 Ig2_Nectin-1_like Seco 95.6 0.098 2.1E-06 25.1 6.3 72 15-91 23-97 (98)
201 PF06328 Lep_receptor_Ig: Ig-l 95.4 0.12 2.5E-06 24.5 5.9 65 5-76 11-80 (89)
202 PHA03052 Hypothetical protein; 94.8 0.15 3.3E-06 22.8 4.6 36 3-38 3-41 (69)
203 PHA02865 MHC-like TNF binding 94.7 0.28 6.2E-06 29.0 6.0 21 14-34 216-238 (338)
204 PHA02982 hypothetical protein; 92.9 0.92 2E-05 25.3 6.8 78 6-83 33-125 (251)
205 PF05790 C2-set: Immunoglobuli 92.3 0.6 1.3E-05 21.7 8.5 31 60-90 45-76 (80)
206 PHA03271 envelope glycoprotein 92.0 1.9 4.1E-05 26.6 6.8 34 8-41 256-292 (490)
207 PHA03270 envelope glycoprotein 91.8 2 4.3E-05 26.6 7.8 71 8-78 230-305 (466)
208 PHA03269 envelope glycoprotein 91.8 2.2 4.7E-05 26.9 6.6 33 8-40 338-373 (566)
209 PHA03273 envelope glycoprotein 90.7 2.8 6E-05 26.2 7.8 71 8-78 246-322 (486)
210 PHA03376 BARF1; Provisional 84.0 1.3 2.7E-05 24.5 2.2 24 12-35 139-162 (221)
211 PF01688 Herpes_gI: Alphaherpe 78.4 8.4 0.00018 20.6 5.0 36 58-93 124-159 (161)
212 PHA03189 UL14 tegument protein 75.9 14 0.00031 22.1 9.2 22 3-24 58-79 (348)
213 PF06832 BiPBP_C: Penicillin-B 75.4 7 0.00015 18.2 6.7 55 14-85 31-85 (89)
214 PHA03291 envelope glycoprotein 72.0 20 0.00043 22.0 5.1 39 57-95 128-166 (401)
215 PHA02914 Immunoglobulin-like d 68.5 27 0.00058 22.0 4.9 22 58-79 81-102 (500)
216 PHA03282 envelope glycoprotein 67.9 22 0.00047 22.8 4.4 24 57-80 123-146 (540)
217 PHA03290 envelope glycoprotein 66.8 26 0.00057 21.3 5.4 38 57-94 128-165 (357)
218 COG5475 Uncharacterized small 65.3 11 0.00023 16.4 2.1 18 70-87 28-45 (60)
219 PHA03292 envelope glycoprotein 62.5 35 0.00076 21.2 5.1 38 57-94 127-164 (413)
220 PHA03283 envelope glycoprotein 61.4 41 0.00089 21.9 4.8 36 57-92 133-168 (542)
221 COG3978 Acetolactate synthase 56.2 21 0.00047 16.8 2.8 29 68-96 25-53 (86)
222 PHA03289 envelope glycoprotein 55.8 45 0.00097 20.3 5.7 37 58-94 122-158 (352)
223 PF13220 DUF4028: Protein of u 54.8 15 0.00031 15.7 1.6 16 68-83 8-23 (65)
224 PHA03240 envelope glycoprotein 54.3 29 0.00063 19.7 3.1 20 57-76 104-123 (258)
225 PF03921 ICAM_N: Intercellular 50.7 29 0.00064 16.7 9.4 77 4-93 10-86 (91)
226 KOG0613|consensus 49.5 18 0.0004 25.9 2.2 78 5-85 342-420 (1205)
227 PHA03112 IL-18 binding protein 40.4 58 0.0013 17.2 4.5 28 8-35 34-63 (141)
228 PHA03286 envelope glycoprotein 31.0 1.5E+02 0.0033 19.2 4.1 36 57-92 126-162 (492)
229 PF02440 Adeno_E3_CR1: Adenovi 29.5 64 0.0014 14.4 2.3 21 9-33 2-22 (63)
230 PF15096 G6B: G6B family 27.4 65 0.0014 18.0 1.8 18 7-24 6-23 (224)
231 PF11049 KSHV_K1: Glycoprotein 27.1 56 0.0012 14.8 1.3 21 17-39 3-23 (71)
232 PF02480 Herpes_gE: Alphaherpe 26.0 78 0.0017 20.2 2.2 22 59-80 270-291 (439)
233 PF10572 UPF0556: Uncharacteri 25.1 1.3E+02 0.0027 16.3 3.9 18 66-83 68-85 (158)
234 PF03426 CBM_15: Carbohydrate 24.3 57 0.0012 16.7 1.2 19 70-88 81-99 (163)
235 PF11141 DUF2914: Protein of u 24.2 84 0.0018 14.0 7.3 57 28-91 8-64 (66)
No 1
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.86 E-value=6.8e-20 Score=87.74 Aligned_cols=89 Identities=16% Similarity=0.188 Sum_probs=73.9
Q ss_pred CceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150 3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN 82 (97)
Q Consensus 3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g 82 (97)
.+.++.+..|+.+.|.|.+.|.|.|.+.|++++..+....+..... ....+.|.|..+...|.|.|.|.+.|..|
T Consensus 6 ~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~-----~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G 80 (98)
T cd05762 6 FPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIEN-----TENSSKLTITEGQQEHCGCYTLEVENKLG 80 (98)
T ss_pred CCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEe-----cCCeeEEEECCCChhhCEEEEEEEEcCCC
Confidence 3467889999999999999999999999999999987554443321 11246799999999999999999999999
Q ss_pred ceeEEEEEEEEEee
Q psy9150 83 VDTRTFKTDFSITF 96 (97)
Q Consensus 83 ~~~~~~~~~~~~~~ 96 (97)
...+.+.|.|..-+
T Consensus 81 ~~~~~~~l~V~~~P 94 (98)
T cd05762 81 SRQAQVNLTVVDKP 94 (98)
T ss_pred ceeEEEEEEEecCC
Confidence 99999988887543
No 2
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.86 E-value=9.6e-20 Score=87.49 Aligned_cols=90 Identities=20% Similarity=0.271 Sum_probs=70.4
Q ss_pred ceeeEEEcCCeEEEEEEecc-cCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150 4 HFDYEYVLGHKIVFICMAKG-KPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN 82 (97)
Q Consensus 4 ~~~~~~~~g~~~~l~c~~~~-~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g 82 (97)
...+.+.+|+.+.|.|.+.| .|+|.+.|+++|.++....................+|.|..++.+|.|.|+|.+.|..|
T Consensus 10 ~~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G 89 (101)
T cd04975 10 NTTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDA 89 (101)
T ss_pred CceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCc
Confidence 35778899999999999999 89999999999999875432211110001123457899999999999999999999999
Q ss_pred ceeEEEEEEEE
Q psy9150 83 VDTRTFKTDFS 93 (97)
Q Consensus 83 ~~~~~~~~~~~ 93 (97)
.....+.|.|.
T Consensus 90 ~~~~t~~L~V~ 100 (101)
T cd04975 90 SKSLTFELYVN 100 (101)
T ss_pred cEEEEEEEEEE
Confidence 99888888764
No 3
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.85 E-value=9.8e-20 Score=86.37 Aligned_cols=86 Identities=19% Similarity=0.298 Sum_probs=69.6
Q ss_pred CceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150 3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN 82 (97)
Q Consensus 3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g 82 (97)
.+..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+....+..... .. ....+|.|..+...|+|.|.|.+.|..|
T Consensus 7 lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~---~~-~~~~~L~I~~v~~~D~G~Y~C~a~N~~G 82 (92)
T cd05737 7 LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKV---EQ-GKYASLTIKGVSSEDSGKYGIVVKNKYG 82 (92)
T ss_pred CCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEE---cC-CCEEEEEEccCChhhCEEEEEEEEECCC
Confidence 4567889999999999999999999999999999887554443321 11 1134799999999999999999999999
Q ss_pred ceeEEEEEEE
Q psy9150 83 VDTRTFKTDF 92 (97)
Q Consensus 83 ~~~~~~~~~~ 92 (97)
.....+.|.+
T Consensus 83 ~~~~~~~v~v 92 (92)
T cd05737 83 GETVDVTVSV 92 (92)
T ss_pred cceEEEEEeC
Confidence 9988876653
No 4
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.84 E-value=7.6e-19 Score=82.30 Aligned_cols=83 Identities=20% Similarity=0.280 Sum_probs=67.4
Q ss_pred eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEcccc-ceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150 5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTH-MYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV 83 (97)
Q Consensus 5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~ 83 (97)
..+.+..|+.+.|.|.+.|.|.|.+.|++++..+... .+.... .......|.|..+...|.|.|.|.+.|..|.
T Consensus 3 ~~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~-----~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~ 77 (86)
T cd05894 3 NTIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVE-----SYKDLSSFVIEGAEREDEGVYTITVTNPVGE 77 (86)
T ss_pred CEEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEE-----EcCCeEEEEECCCccCcCEEEEEEEEeCCCc
Confidence 3677899999999999999999999999999988643 233221 1112467999999999999999999999999
Q ss_pred eeEEEEEEE
Q psy9150 84 DTRTFKTDF 92 (97)
Q Consensus 84 ~~~~~~~~~ 92 (97)
....+.|.|
T Consensus 78 ~~~~~~l~V 86 (86)
T cd05894 78 DHASLFVKV 86 (86)
T ss_pred EEEEEEEEC
Confidence 988877653
No 5
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.83 E-value=3.1e-19 Score=83.99 Aligned_cols=80 Identities=24% Similarity=0.369 Sum_probs=65.6
Q ss_pred ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150 4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV 83 (97)
Q Consensus 4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~ 83 (97)
..+..+.+|+.+.|.|.+.|.|.|.+.|++++..+........ . ...|.|..+..+|.|.|.|.+.|..|.
T Consensus 8 ~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~-----~----~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 78 (88)
T cd05851 8 FKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISM-----S----GAVLKIFNIQPEDEGTYECEAENIKGK 78 (88)
T ss_pred cccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEec-----C----CCEEEECcCChhhCEEEEEEEEcCCCc
Confidence 4577889999999999999999999999998876654322211 1 247999999999999999999999999
Q ss_pred eeEEEEEEE
Q psy9150 84 DTRTFKTDF 92 (97)
Q Consensus 84 ~~~~~~~~~ 92 (97)
......|.|
T Consensus 79 ~~~~~~l~V 87 (88)
T cd05851 79 DKHQARVYV 87 (88)
T ss_pred eEEEEEEEE
Confidence 888777654
No 6
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.82 E-value=8.7e-19 Score=84.24 Aligned_cols=88 Identities=24% Similarity=0.292 Sum_probs=68.7
Q ss_pred eeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEE-EecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEW-HYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD 84 (97)
Q Consensus 6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~ 84 (97)
...+..|..+.|.|.+.|.|.|.+.|+++|.++........... ........++|.|..+..+|.|.|+|.+.|..|..
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 56777889999999999999999999999999875442211100 00112235689999999999999999999999999
Q ss_pred eEEEEEEEE
Q psy9150 85 TRTFKTDFS 93 (97)
Q Consensus 85 ~~~~~~~~~ 93 (97)
...+.|.+.
T Consensus 92 ~~t~~l~V~ 100 (101)
T cd05859 92 SYTFALQIQ 100 (101)
T ss_pred EEEEEEEEE
Confidence 988888764
No 7
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.82 E-value=3.5e-19 Score=81.38 Aligned_cols=74 Identities=27% Similarity=0.475 Sum_probs=61.0
Q ss_pred cCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEE
Q psy9150 11 LGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKT 90 (97)
Q Consensus 11 ~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~ 90 (97)
+|+.+.|.|.+.|.|.|.+.|++++..+......... ...+|.|..+...|.|.|.|.+.|..|.......|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~--------~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L 72 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVL--------SSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQL 72 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEc--------cCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEE
Confidence 5889999999999999999999999887654332221 13479999999999999999999999998887766
Q ss_pred EE
Q psy9150 91 DF 92 (97)
Q Consensus 91 ~~ 92 (97)
.|
T Consensus 73 ~V 74 (74)
T cd05745 73 TV 74 (74)
T ss_pred eC
Confidence 53
No 8
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.82 E-value=1.4e-18 Score=79.87 Aligned_cols=76 Identities=25% Similarity=0.529 Sum_probs=59.0
Q ss_pred EEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEE
Q psy9150 17 FICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDF 92 (97)
Q Consensus 17 l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~ 92 (97)
+.|.+.|.|.|.+.|+++|..+....+................|.|..+...|.|.|.|.|.|..|.....+.+.+
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~f 78 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAHF 78 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEeec
Confidence 5788999999999999999999765433221111112223568999999999999999999999999999888765
No 9
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.82 E-value=3.4e-18 Score=80.41 Aligned_cols=84 Identities=23% Similarity=0.326 Sum_probs=65.6
Q ss_pred CCeEEEEEEecccCCCeeEEEeCCEEccccc-eeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEE
Q psy9150 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHM-YVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKT 90 (97)
Q Consensus 12 g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~ 90 (97)
|+.+.|.|.+.|.|++.+.|++++..+.... ++..... .......+.|.|..+...|.|.|.|.+.|..|.....+.|
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~-~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L 79 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTK-EVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQL 79 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEe-cCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEE
Confidence 6789999999999999999999998775432 2222211 1122335689999999999999999999999999999888
Q ss_pred EEEEee
Q psy9150 91 DFSITF 96 (97)
Q Consensus 91 ~~~~~~ 96 (97)
.+..-+
T Consensus 80 ~V~~~P 85 (88)
T cd05735 80 TVQEPP 85 (88)
T ss_pred EEeCCC
Confidence 876544
No 10
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.82 E-value=2.2e-18 Score=81.70 Aligned_cols=87 Identities=18% Similarity=0.305 Sum_probs=69.4
Q ss_pred CCceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150 2 HSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY 81 (97)
Q Consensus 2 ~~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~ 81 (97)
..+..+.+.+|+.+.|.|.+.+.|.|.+.|++++..+....++.... ... ...+|.|..+..+|.|.|.|.+.|..
T Consensus 6 ~~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~---~~~-~~~~L~I~~~~~~D~G~Y~C~a~N~~ 81 (92)
T cd05891 6 GLPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKL---EQG-KYASLTIKGVTSEDSGKYSINVKNKY 81 (92)
T ss_pred cCCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEE---cCC-CEEEEEECCCChhhCEEEEEEEEeCC
Confidence 35678899999999999999999999999999998876544333211 111 12479999999999999999999999
Q ss_pred CceeEEEEEEE
Q psy9150 82 NVDTRTFKTDF 92 (97)
Q Consensus 82 g~~~~~~~~~~ 92 (97)
|.....+.|.+
T Consensus 82 G~~~~~~~v~~ 92 (92)
T cd05891 82 GGETVDVTVSV 92 (92)
T ss_pred CceeeEEEEEC
Confidence 99988876653
No 11
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.81 E-value=1.3e-18 Score=81.41 Aligned_cols=80 Identities=25% Similarity=0.476 Sum_probs=67.2
Q ss_pred CceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150 3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN 82 (97)
Q Consensus 3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g 82 (97)
.+.+..+..|+.+.|.|.+.|.|.|.+.|++++..+....+.... ...|.|..+...|.|.|.|.+.|..|
T Consensus 5 ~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~---------~~~L~i~~~~~~D~G~Y~C~a~N~~G 75 (85)
T cd05728 5 VISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVE---------AGDLRITKLSLSDSGMYQCVAENKHG 75 (85)
T ss_pred cCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEe---------CCEEEEeeCCHHHCEEEEEEEECCCC
Confidence 456788899999999999999999999999999988654433321 34789999999999999999999999
Q ss_pred ceeEEEEEE
Q psy9150 83 VDTRTFKTD 91 (97)
Q Consensus 83 ~~~~~~~~~ 91 (97)
.......|.
T Consensus 76 ~~~~~~~l~ 84 (85)
T cd05728 76 TIYASAELA 84 (85)
T ss_pred eEEEEEEEE
Confidence 988877665
No 12
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.81 E-value=3.7e-18 Score=81.40 Aligned_cols=83 Identities=23% Similarity=0.390 Sum_probs=67.5
Q ss_pred eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEcccc-ceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150 5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTH-MYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV 83 (97)
Q Consensus 5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~ 83 (97)
.++.+..|+.+.|.|.+.|.|.|.+.|++++..+... ...... . ....|.|..+...|.|.|.|.+.|..|.
T Consensus 11 ~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~-----~--~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 83 (95)
T cd05730 11 VNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFN-----E--DGSEMTILDVDKLDEAEYTCIAENKAGE 83 (95)
T ss_pred cceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEe-----C--CCCEEEECCCChhhCEEEEEEEEcCCCe
Confidence 4567889999999999999999999999999887654 222111 1 1346999999999999999999999999
Q ss_pred eeEEEEEEEEE
Q psy9150 84 DTRTFKTDFSI 94 (97)
Q Consensus 84 ~~~~~~~~~~~ 94 (97)
....+.|.|.+
T Consensus 84 ~~~~~~L~V~~ 94 (95)
T cd05730 84 QEAEIHLKVFA 94 (95)
T ss_pred EEEEEEEEEEe
Confidence 98888887753
No 13
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.81 E-value=9.6e-19 Score=79.62 Aligned_cols=73 Identities=25% Similarity=0.495 Sum_probs=60.2
Q ss_pred CCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEE
Q psy9150 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTD 91 (97)
Q Consensus 12 g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~ 91 (97)
|+.+.|.|.+.|.|.|.+.|++++..+....+..+. . ..+|.|..+..+|.|.|.|.+.|..|.......|.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~----~----~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 72 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIW----D----DGSLEILNITKLDEGSYTCFAENNRGKANSTGVLS 72 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEc----C----CCEEEECcCChhHCEEEEEEEECCCCceeEEEEEE
Confidence 578999999999999999999999877544433321 1 24799999999999999999999999998887765
Q ss_pred E
Q psy9150 92 F 92 (97)
Q Consensus 92 ~ 92 (97)
+
T Consensus 73 ~ 73 (73)
T cd05852 73 V 73 (73)
T ss_pred C
Confidence 3
No 14
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.81 E-value=3.9e-18 Score=80.57 Aligned_cols=84 Identities=17% Similarity=0.232 Sum_probs=66.7
Q ss_pred CceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150 3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN 82 (97)
Q Consensus 3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g 82 (97)
++.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+......... .......|.|..+...|.|.|.|.+.|..|
T Consensus 6 ~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~-----~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G 80 (90)
T cd04972 6 GPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLE-----TTVDIYNLQLSNITSETQTTVTCTAENPVG 80 (90)
T ss_pred CCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEE-----ecCCEEEEEEecCCcccCEEEEEEEECCCC
Confidence 455667899999999999999999999999999877543321111 111245799999999999999999999999
Q ss_pred ceeEEEEEE
Q psy9150 83 VDTRTFKTD 91 (97)
Q Consensus 83 ~~~~~~~~~ 91 (97)
.......|.
T Consensus 81 ~~~~~~~L~ 89 (90)
T cd04972 81 QANVSVQVT 89 (90)
T ss_pred ceeEEEEEe
Confidence 988877665
No 15
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.81 E-value=8.5e-19 Score=78.35 Aligned_cols=66 Identities=18% Similarity=0.297 Sum_probs=55.9
Q ss_pred EEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEEE
Q psy9150 15 IVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFS 93 (97)
Q Consensus 15 ~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~~ 93 (97)
+.|.|.+.|.|.|.+.|+++|..+.... ....|.|..+..+|.|.|+|.+.|..|...+.+.+.+.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~-------------~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGKH-------------SQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECcccC-------------CcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 3689999999999999999999885321 13479999999999999999999999988887777664
No 16
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.81 E-value=4.8e-18 Score=80.57 Aligned_cols=82 Identities=22% Similarity=0.393 Sum_probs=67.2
Q ss_pred ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150 4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV 83 (97)
Q Consensus 4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~ 83 (97)
+.++.+..|+.+.|.|.+.|.|.|.+.|++++..+....+..+.. .....+|.|..+..+|.|.|.|.+.|..|.
T Consensus 10 p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~-----~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~ 84 (92)
T cd05747 10 PRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITS-----TEYKSTFEISKVQMSDEGNYTVVVENSEGK 84 (92)
T ss_pred CccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEE-----cCCeeEEEECCCCcccCEeEEEEEEcCCCC
Confidence 457889999999999999999999999999998876544433321 111458999999999999999999999999
Q ss_pred eeEEEEE
Q psy9150 84 DTRTFKT 90 (97)
Q Consensus 84 ~~~~~~~ 90 (97)
....+.|
T Consensus 85 ~~~~~~l 91 (92)
T cd05747 85 QEAQFTL 91 (92)
T ss_pred EeEEEEe
Confidence 8887765
No 17
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.80 E-value=1.1e-17 Score=78.18 Aligned_cols=83 Identities=22% Similarity=0.416 Sum_probs=64.7
Q ss_pred eeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCcee
Q psy9150 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT 85 (97)
Q Consensus 6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~ 85 (97)
.+.+..|+.+.|.|.+.|.|.|.+.|++++..+............ .....|.|..+...|.|.|.|.+.|..|...
T Consensus 3 ~~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~----~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~ 78 (85)
T cd05857 3 LHAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVR----NQHWSLIMESVVPSDKGNYTCVVENEYGSIN 78 (85)
T ss_pred cEEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEe----CCceEEEEccCCcccCEEEEEEEEeCCCEEE
Confidence 345788999999999999999999999999887654322111100 0134688999999999999999999999999
Q ss_pred EEEEEEE
Q psy9150 86 RTFKTDF 92 (97)
Q Consensus 86 ~~~~~~~ 92 (97)
..+.|.|
T Consensus 79 ~~~~l~v 85 (85)
T cd05857 79 HTYHLDV 85 (85)
T ss_pred EEEEEEC
Confidence 8887754
No 18
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.80 E-value=3.5e-18 Score=78.07 Aligned_cols=74 Identities=22% Similarity=0.307 Sum_probs=58.2
Q ss_pred EEEEEEecccCCCeeEEEeCCEEcccc-ceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEE
Q psy9150 15 IVFICMAKGKPRPHITWFKDGVELYTH-MYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDF 92 (97)
Q Consensus 15 ~~l~c~~~~~~~p~i~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~ 92 (97)
+.|.|.+.|.|.|.+.|++++..+... .++.+.. ......+|.|..+...|.|.|.|.+.|..|.......|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~----~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQ----DNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEE----cCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 368999999999999999999988643 3333321 1111247999999999999999999999999988877653
No 19
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.80 E-value=5.2e-18 Score=77.84 Aligned_cols=74 Identities=20% Similarity=0.320 Sum_probs=59.8
Q ss_pred CCeEEEEEEecccCCCeeEEEeCCEEcccccee-eEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEE
Q psy9150 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYV-NLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKT 90 (97)
Q Consensus 12 g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~ 90 (97)
|+.+.|.|.+.|.|.|.+.|+++|..+...... ... .....|.|..++..|.|.|.|.+.|..|.....+.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~-------~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 73 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRH-------VSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHV 73 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEE-------eeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEE
Confidence 678999999999999999999999887643211 110 013479999999999999999999999999888877
Q ss_pred EE
Q psy9150 91 DF 92 (97)
Q Consensus 91 ~~ 92 (97)
.|
T Consensus 74 ~V 75 (76)
T cd05867 74 HV 75 (76)
T ss_pred EE
Confidence 65
No 20
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.79 E-value=7.2e-18 Score=77.01 Aligned_cols=73 Identities=23% Similarity=0.353 Sum_probs=59.3
Q ss_pred EEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEE
Q psy9150 15 IVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDF 92 (97)
Q Consensus 15 ~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~ 92 (97)
+.|.|.+.|.|.|.+.|++++..+....+..... ......|.|..+...|.|.|.|.+.|..|.....+.|.|
T Consensus 2 ~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~-----~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 2 VRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIET-----TASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred EEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEE-----CCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 6789999999999999999999886544433321 112567999999999999999999999999988887653
No 21
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.79 E-value=1.7e-18 Score=78.10 Aligned_cols=68 Identities=19% Similarity=0.303 Sum_probs=55.6
Q ss_pred EEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEEE
Q psy9150 16 VFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFS 93 (97)
Q Consensus 16 ~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~~ 93 (97)
.+.|.+.|.|.|.+.|++++.++....... ....|.|..+..+|.|.|.|.+.|..|.......+.+.
T Consensus 2 ~~~c~v~G~P~P~v~W~k~g~~l~~~~~~~----------~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 2 KIPVKYYGYPPPEVKWYKNGQLIVLNHTFK----------RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred EEEeEEEEeCCCEEEEEECCEECCCCCEEc----------cCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence 688999999999999999999886542211 02469999999999999999999999987776666654
No 22
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.79 E-value=2.5e-18 Score=77.93 Aligned_cols=70 Identities=20% Similarity=0.310 Sum_probs=57.9
Q ss_pred EEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEEE
Q psy9150 15 IVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFS 93 (97)
Q Consensus 15 ~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~~ 93 (97)
+.|.|.+.|.|.|.+.|+++|..+........ . ..+|.|..+...|+|.|+|.+.|..|.....+.+.+.
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~-----~----~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKK-----S----GHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEEc-----C----CCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 36889999999999999999998875432211 1 3579999999999999999999999998888877765
No 23
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.79 E-value=1.3e-17 Score=79.62 Aligned_cols=88 Identities=22% Similarity=0.260 Sum_probs=64.8
Q ss_pred eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150 5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD 84 (97)
Q Consensus 5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~ 84 (97)
.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+.....................|.|..+..+|.|.|.|.+.|..|..
T Consensus 9 ~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 88 (96)
T cd05732 9 ENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGD 88 (96)
T ss_pred CceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCc
Confidence 46778899999999999999999999999886554221100000011112224689999999999999999999999998
Q ss_pred eEEEEEEE
Q psy9150 85 TRTFKTDF 92 (97)
Q Consensus 85 ~~~~~~~~ 92 (97)
...+.|.+
T Consensus 89 ~~s~~l~v 96 (96)
T cd05732 89 QQSMYLEV 96 (96)
T ss_pred EEEEEEeC
Confidence 88776653
No 24
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.79 E-value=1.3e-17 Score=79.49 Aligned_cols=85 Identities=26% Similarity=0.464 Sum_probs=64.3
Q ss_pred ceeeEEEcCCeEEEEEEecccCC-CeeEEEe-CCEEccc-cceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcC
Q psy9150 4 HFDYEYVLGHKIVFICMAKGKPR-PHITWFK-DGVELYT-HMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNM 80 (97)
Q Consensus 4 ~~~~~~~~g~~~~l~c~~~~~~~-p~i~w~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~ 80 (97)
+....+..|+.+.|.|.+.|.|. |.+.|++ ++..+.. ..+.... .......+|.|..++.+|.|.|+|.+.|.
T Consensus 7 p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~----~~~~~~~~L~I~~v~~~D~G~YtC~A~N~ 82 (96)
T cd05865 7 PSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVV----RNDDYSSTLTIYNANIDDAGIYKCVVSNE 82 (96)
T ss_pred CCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEE----eCCCCceEEEEeccChhhCEEEEEEEEcC
Confidence 45567889999999999999984 7999998 6765543 2222221 11222468999999999999999999999
Q ss_pred C-CceeEEEEEEE
Q psy9150 81 Y-NVDTRTFKTDF 92 (97)
Q Consensus 81 ~-g~~~~~~~~~~ 92 (97)
. |.....+.|.+
T Consensus 83 ~~g~~~~s~~l~v 95 (96)
T cd05865 83 DEGESEATVNVKI 95 (96)
T ss_pred CCCcEEEEEEEEE
Confidence 7 77888777664
No 25
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.79 E-value=1.9e-17 Score=76.73 Aligned_cols=76 Identities=22% Similarity=0.491 Sum_probs=58.4
Q ss_pred EEEEecccCCCeeEEEeCCEEccccceeeEEEEEe--cCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEE
Q psy9150 17 FICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHY--GTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDF 92 (97)
Q Consensus 17 l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~ 92 (97)
+.|.+.|.|.|.+.|+++|..+............. ........|.|..+...|.|.|+|.+.|..|.....+.+.+
T Consensus 3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~~ 80 (81)
T cd04971 3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAHF 80 (81)
T ss_pred EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEeee
Confidence 67999999999999999999987654322111000 11223557999999999999999999999999999887764
No 26
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.79 E-value=1.7e-17 Score=78.13 Aligned_cols=80 Identities=25% Similarity=0.395 Sum_probs=64.7
Q ss_pred ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150 4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV 83 (97)
Q Consensus 4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~ 83 (97)
+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+........ ....|.|..++.+|.|.|.|.+.|..|.
T Consensus 8 p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~---------~~~~L~i~~v~~~D~G~Y~C~a~N~~G~ 78 (88)
T cd04968 8 PKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISM---------SGAVLKIPNIQFEDEGTYECEAENIKGK 78 (88)
T ss_pred CCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEEE---------eCCEEEECCCCcccCEEEEEEEEECCCc
Confidence 3567788999999999999999999999998765543322211 1357999999999999999999999999
Q ss_pred eeEEEEEEE
Q psy9150 84 DTRTFKTDF 92 (97)
Q Consensus 84 ~~~~~~~~~ 92 (97)
......|.|
T Consensus 79 ~~~~~~l~V 87 (88)
T cd04968 79 DTHQGRIYV 87 (88)
T ss_pred EEEEEEEEE
Confidence 888776654
No 27
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.78 E-value=1.7e-17 Score=79.40 Aligned_cols=85 Identities=22% Similarity=0.316 Sum_probs=61.7
Q ss_pred EEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEE
Q psy9150 8 EYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRT 87 (97)
Q Consensus 8 ~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~ 87 (97)
.+..|+.+.|.|.+.|.|.|.+.|++++..+...................+.|.|..+...|.|.|.|.+.|..|.....
T Consensus 13 ~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~ 92 (97)
T cd05869 13 AMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQS 92 (97)
T ss_pred EEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeEE
Confidence 34457999999999999999999999887664321100000001111224579999999999999999999999999888
Q ss_pred EEEEE
Q psy9150 88 FKTDF 92 (97)
Q Consensus 88 ~~~~~ 92 (97)
+.|.|
T Consensus 93 ~~l~v 97 (97)
T cd05869 93 MYLEV 97 (97)
T ss_pred EEEEC
Confidence 87653
No 28
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.78 E-value=1.4e-17 Score=78.54 Aligned_cols=85 Identities=26% Similarity=0.425 Sum_probs=71.9
Q ss_pred CceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150 3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN 82 (97)
Q Consensus 3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g 82 (97)
.+.++.+..|+.+.|.|.+.+.|.|.+.|++++..+....+...... ....+|.|..+...|.|.|.|.+.|..|
T Consensus 6 ~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~-----~~~~~L~I~~v~~~D~G~Y~C~~~n~~g 80 (90)
T PF07679_consen 6 KPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESD-----GGSSSLTIKNVTREDAGTYTCVASNSSG 80 (90)
T ss_dssp ESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEE-----TTEEEEEESSESGGGSEEEEEEEEETTE
T ss_pred ecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecc-----cceeEEccCCCChhhCEEEEEEEEECCC
Confidence 34688899999999999999999999999999999987655544321 1367899999999999999999999999
Q ss_pred ceeEEEEEEE
Q psy9150 83 VDTRTFKTDF 92 (97)
Q Consensus 83 ~~~~~~~~~~ 92 (97)
.....+.|.|
T Consensus 81 ~~~~~~~l~V 90 (90)
T PF07679_consen 81 EATASVNLTV 90 (90)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEC
Confidence 9988887764
No 29
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.78 E-value=1.4e-17 Score=75.50 Aligned_cols=70 Identities=23% Similarity=0.522 Sum_probs=56.2
Q ss_pred EEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEE
Q psy9150 15 IVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDF 92 (97)
Q Consensus 15 ~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~ 92 (97)
+.|.|.+.|.|.|.+.|++++..+....+..... ...+.+..+..+|.|.|.|.+.|..|.......|.|
T Consensus 2 v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~--------~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 2 VIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVK--------EHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred EEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEe--------cCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 6789999999999999999998876544333211 235777899999999999999999999888776653
No 30
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.78 E-value=1.5e-17 Score=75.98 Aligned_cols=74 Identities=28% Similarity=0.387 Sum_probs=57.5
Q ss_pred EEEEEEecccCCCeeEEEeCCEEcccc-ceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEE
Q psy9150 15 IVFICMAKGKPRPHITWFKDGVELYTH-MYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDF 92 (97)
Q Consensus 15 ~~l~c~~~~~~~p~i~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~ 92 (97)
+.|.|.+.|.|.|.+.|++++..+... .+..+.. .......|.|..+..+|.|.|.|.+.|..|.......|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~----~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQ----DNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEE----cCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 368999999999999999999888643 2333321 1111336999999999999999999999999988777653
No 31
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.78 E-value=1.2e-17 Score=77.56 Aligned_cols=80 Identities=28% Similarity=0.456 Sum_probs=63.4
Q ss_pred eeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCcee
Q psy9150 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT 85 (97)
Q Consensus 6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~ 85 (97)
.+....|+.+.|.|.+.|.|.|.+.|++++..+........ ......|.|..+..+|.|.|.|.+.|..|...
T Consensus 3 ~~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~-------~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~ 75 (82)
T cd05856 3 VIARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGES-------RKKKWTLSLKNLKPEDSGKYTCHVSNRAGEIN 75 (82)
T ss_pred ceeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCcccee-------cCceEEEEEccCChhhCEEEEEEEEcCCccEE
Confidence 45677899999999999999999999999887653321111 11135799999999999999999999999988
Q ss_pred EEEEEEE
Q psy9150 86 RTFKTDF 92 (97)
Q Consensus 86 ~~~~~~~ 92 (97)
..+.|.|
T Consensus 76 ~~~~v~v 82 (82)
T cd05856 76 ATYKVDV 82 (82)
T ss_pred EEEEEeC
Confidence 8877653
No 32
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.77 E-value=2.6e-17 Score=75.33 Aligned_cols=74 Identities=24% Similarity=0.292 Sum_probs=57.5
Q ss_pred EEEEEEecccCCCeeEEEeCCEEcccc-ceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEE
Q psy9150 15 IVFICMAKGKPRPHITWFKDGVELYTH-MYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDF 92 (97)
Q Consensus 15 ~~l~c~~~~~~~p~i~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~ 92 (97)
+.|.|.+.|.|.|.+.|++++..+... .+..+.. ......+|.|..++..|.|.|.|.+.|..|.......|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~----~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQ----DNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEE----cCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 368999999999999999999988643 2332221 1111346999999999999999999999999988876653
No 33
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.77 E-value=2.1e-17 Score=75.80 Aligned_cols=75 Identities=23% Similarity=0.441 Sum_probs=59.1
Q ss_pred CCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEE
Q psy9150 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTD 91 (97)
Q Consensus 12 g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~ 91 (97)
|+.+.|.|.+.|.|.|.+.|+++|..+......... ... ...|.+..+...|.|.|.|.+.|..|.......|.
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~--~~~----~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 74 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSR--KVD----GDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVN 74 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceE--Eec----CCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEE
Confidence 567899999999999999999999887532211110 001 23688899999999999999999999999888776
Q ss_pred E
Q psy9150 92 F 92 (97)
Q Consensus 92 ~ 92 (97)
|
T Consensus 75 v 75 (76)
T cd05868 75 V 75 (76)
T ss_pred e
Confidence 5
No 34
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.77 E-value=2.2e-17 Score=76.28 Aligned_cols=77 Identities=25% Similarity=0.450 Sum_probs=62.4
Q ss_pred eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150 5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD 84 (97)
Q Consensus 5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~ 84 (97)
.++.+.+|+.+.|.|.+.+. .+.+.|+++|..+....+.... ...|.|..+..+|+|.|.|.+.|..|..
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~---------~~~L~I~~~~~~DsG~Y~C~a~n~~g~~ 71 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT---------GEEVQIKDAVPRDSGLYACVTSSPSGSD 71 (79)
T ss_pred CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe---------CCEEEECCCChhhCEEEEEEEeCCCCcc
Confidence 45678899999999999885 5789999999888654443321 2379999999999999999999999987
Q ss_pred eEEEEEE
Q psy9150 85 TRTFKTD 91 (97)
Q Consensus 85 ~~~~~~~ 91 (97)
...+.|.
T Consensus 72 ~~~~~v~ 78 (79)
T cd04973 72 TTYFSVN 78 (79)
T ss_pred cEEEEEe
Confidence 7776654
No 35
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.77 E-value=1.5e-17 Score=75.75 Aligned_cols=73 Identities=26% Similarity=0.505 Sum_probs=60.0
Q ss_pred CCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEE
Q psy9150 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTD 91 (97)
Q Consensus 12 g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~ 91 (97)
|+.+.|.|.+.|.|.|.+.|++++..+....+.... . ...|.|.++...|.|.|.|.+.|..|.....+.|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~----~----~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 72 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIW----P----DGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLS 72 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEEC----C----CCeEEEccCChhHCEEEEEEEECCCCceEEEEEEE
Confidence 678999999999999999999999887654433321 1 24699999999999999999999999998887665
Q ss_pred E
Q psy9150 92 F 92 (97)
Q Consensus 92 ~ 92 (97)
|
T Consensus 73 V 73 (73)
T cd04969 73 V 73 (73)
T ss_pred C
Confidence 3
No 36
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.77 E-value=2.1e-17 Score=76.18 Aligned_cols=77 Identities=22% Similarity=0.349 Sum_probs=60.2
Q ss_pred CCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEE
Q psy9150 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTD 91 (97)
Q Consensus 12 g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~ 91 (97)
|+.+.|.|.+.|.|.|.+.|++++..+....+.... .......|.|..+...|.|.|.|.+.|..|.......+.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~-----~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~ 75 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSIT-----SEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGI 75 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEE-----ECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEE
Confidence 678999999999999999999998877654433321 111245799999999999999999999999887665554
Q ss_pred EE
Q psy9150 92 FS 93 (97)
Q Consensus 92 ~~ 93 (97)
++
T Consensus 76 ~~ 77 (78)
T cd05743 76 LT 77 (78)
T ss_pred EE
Confidence 43
No 37
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.77 E-value=3e-17 Score=78.67 Aligned_cols=83 Identities=23% Similarity=0.378 Sum_probs=62.6
Q ss_pred eeeEEEcCCeEEEEEEecccCCCeeEEEe--CCEEcccc-----ceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEE
Q psy9150 5 FDYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELYTH-----MYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYA 77 (97)
Q Consensus 5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~--~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~ 77 (97)
.++.+.+|+.+.|.|.+.|.|.|.+.|++ ++..+... .++.. ........|.|..+..+|.|.|.|.+
T Consensus 9 ~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v-----~~~~~~~~L~I~~v~~~D~G~Y~C~A 83 (98)
T cd05870 9 KNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEV-----KGQHGESSLHIKDVKLSDSGRYDCEA 83 (98)
T ss_pred ccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEE-----eecCCeeEEEEeeCCcCCCEEEEEEE
Confidence 46788899999999999999999999998 44433211 11211 11112357999999999999999999
Q ss_pred EcCCCceeEEEEEEE
Q psy9150 78 DNMYNVDTRTFKTDF 92 (97)
Q Consensus 78 ~~~~g~~~~~~~~~~ 92 (97)
.|..|.....+.|.|
T Consensus 84 ~N~~G~~~~~~~l~~ 98 (98)
T cd05870 84 ASRIGGHQKSMYLDI 98 (98)
T ss_pred eccCCcceeEEEEeC
Confidence 999999888776653
No 38
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.76 E-value=3.4e-17 Score=75.08 Aligned_cols=75 Identities=21% Similarity=0.286 Sum_probs=60.1
Q ss_pred CCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEE
Q psy9150 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTD 91 (97)
Q Consensus 12 g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~ 91 (97)
|+.+.|.|.+.|.|.|.+.|++++..+......... ......|.|..++..|.|.|.|.+.|..|.....+.|.
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~------~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 74 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRR------RVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVH 74 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceE------EccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEE
Confidence 678999999999999999999999887654321000 01135799999999999999999999999998888776
Q ss_pred E
Q psy9150 92 F 92 (97)
Q Consensus 92 ~ 92 (97)
|
T Consensus 75 V 75 (76)
T cd04978 75 V 75 (76)
T ss_pred E
Confidence 5
No 39
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.75 E-value=5.7e-17 Score=74.53 Aligned_cols=74 Identities=26% Similarity=0.538 Sum_probs=55.1
Q ss_pred EEEEEEecccCCCeeEEEeCCEEccccc-eeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEEE
Q psy9150 15 IVFICMAKGKPRPHITWFKDGVELYTHM-YVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFS 93 (97)
Q Consensus 15 ~~l~c~~~~~~~p~i~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~~ 93 (97)
+.|.|.+.|.|.|.+.|+++|..+.... ..... . ....|.|..+..+|.|.|.|.+.|..|.......+.+.
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~----~---~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~ 73 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVS----S---KERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLS 73 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEe----C---CCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEE
Confidence 3689999999999999999998875432 11111 1 12478999999999999999999999987554444444
Q ss_pred Ee
Q psy9150 94 IT 95 (97)
Q Consensus 94 ~~ 95 (97)
++
T Consensus 74 v~ 75 (77)
T cd05760 74 II 75 (77)
T ss_pred Ee
Confidence 43
No 40
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.75 E-value=7.7e-17 Score=72.61 Aligned_cols=68 Identities=24% Similarity=0.436 Sum_probs=52.8
Q ss_pred CCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEE
Q psy9150 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKT 90 (97)
Q Consensus 12 g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~ 90 (97)
|+.+.|.|.+.|.|.|.+.|++++..+........ ....|.|..+. |.|.|.|.+.|..|.......|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~---------~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV---------GRNVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceec---------CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 57899999999999999999999988754332211 12357777764 7899999999999988776654
No 41
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.75 E-value=3.4e-17 Score=74.20 Aligned_cols=70 Identities=21% Similarity=0.425 Sum_probs=55.4
Q ss_pred EEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEE
Q psy9150 15 IVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDF 92 (97)
Q Consensus 15 ~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~ 92 (97)
+.|.|.+.|.|.|.+.|++++..+..... ... .....|.|..+...|.|.|.|.+.|..|.....+.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~-~~~-------~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRT-KKL-------NNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCce-eEE-------cCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 36889999999999999998876643221 110 11357999999999999999999999999888877665
No 42
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.75 E-value=2.5e-17 Score=74.26 Aligned_cols=68 Identities=29% Similarity=0.527 Sum_probs=55.4
Q ss_pred EEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEE
Q psy9150 15 IVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKT 90 (97)
Q Consensus 15 ~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~ 90 (97)
+.|.|.+.|.|.|.+.|++++..+....+.... . ...|.|..+...|.|.|.|.+.|..|.....+.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~-----~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHIS-----P---EGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEEC-----C---CCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 368999999999999999999887654433221 1 3479999999999999999999999998877655
No 43
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.74 E-value=2.9e-16 Score=76.52 Aligned_cols=85 Identities=20% Similarity=0.240 Sum_probs=64.0
Q ss_pred cCCeEEEEEEecccCCCeeEEEeCCEEcccc-ceeeEEEEEecCceEEEEEEEccCC-CCCCEEEEEEEEcCCCceeEEE
Q psy9150 11 LGHKIVFICMAKGKPRPHITWFKDGVELYTH-MYVNLHEWHYGTDRIKSKIEIDPAT-QMDAGIYECYADNMYNVDTRTF 88 (97)
Q Consensus 11 ~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~c~~~~~~g~~~~~~ 88 (97)
.|..+.|.|.+.|.|.|.+.|++++..+... .+...... .......+.|.|..+. ..|.|.|.|.+.|..|.....+
T Consensus 22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~-~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i 100 (109)
T cd05773 22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTE-HTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDI 100 (109)
T ss_pred CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEee-ccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEE
Confidence 5678999999999999999999999888642 22222111 1112224679999987 5899999999999999998888
Q ss_pred EEEEEEee
Q psy9150 89 KTDFSITF 96 (97)
Q Consensus 89 ~~~~~~~~ 96 (97)
.|.+..-+
T Consensus 101 ~L~~~~~p 108 (109)
T cd05773 101 QLVSTSRP 108 (109)
T ss_pred EEEecCCC
Confidence 88776543
No 44
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.73 E-value=1.1e-16 Score=72.15 Aligned_cols=68 Identities=26% Similarity=0.426 Sum_probs=54.2
Q ss_pred EEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEE
Q psy9150 15 IVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTD 91 (97)
Q Consensus 15 ~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~ 91 (97)
+.|.|.+.|.|.|.+.|++++..+.... .... ....|.|..+..+|.|.|.|.+.|..|.......|.
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~-~~~~--------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 68 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKGR-AEIL--------DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLT 68 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCCc-EEEe--------eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEE
Confidence 3689999999999999999877664322 2221 134799999999999999999999999988877664
No 45
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.73 E-value=2.2e-16 Score=74.56 Aligned_cols=76 Identities=22% Similarity=0.415 Sum_probs=59.4
Q ss_pred CCeEEEEEEecccCCCeeEEEeCCEEccc--------cceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150 12 GHKIVFICMAKGKPRPHITWFKDGVELYT--------HMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV 83 (97)
Q Consensus 12 g~~~~l~c~~~~~~~p~i~w~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~ 83 (97)
|+.+.|.|.+.|.|.|.+.|++++..+.. ..++.. .. ...|.|..++.+|.|.|.|.+.|..|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v-----~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 72 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSV-----SQ---TGDLTITNVQRSDVGYYICQTLNVAGS 72 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEE-----CC---CCeEEEeeCChhhCEEEEEEEEcCCCc
Confidence 67899999999999999999998754311 111111 10 236999999999999999999999999
Q ss_pred eeEEEEEEEEEe
Q psy9150 84 DTRTFKTDFSIT 95 (97)
Q Consensus 84 ~~~~~~~~~~~~ 95 (97)
....+.|.|...
T Consensus 73 ~~~~~~l~V~~~ 84 (90)
T cd05726 73 ILTKAYLEVTDV 84 (90)
T ss_pred eEEEEEEEEeec
Confidence 998888888753
No 46
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.73 E-value=2.8e-16 Score=71.71 Aligned_cols=73 Identities=26% Similarity=0.480 Sum_probs=56.9
Q ss_pred CCeEEEEEEecccCCCeeEEEe-CCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEE
Q psy9150 12 GHKIVFICMAKGKPRPHITWFK-DGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKT 90 (97)
Q Consensus 12 g~~~~l~c~~~~~~~p~i~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~ 90 (97)
|+.+.|.|.+.|.|.|.+.|++ ++..+......... . ..+|.|..+...|.|.|.|.+.|..|.....+.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~----~----~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 72 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVY----D----NGTLDILITTVKDTGSFTCIASNAAGEATATVEL 72 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEe----c----CCEEEEEECChhhCEEEEEEEECCCCeEEEEEEE
Confidence 6789999999999999999997 66655443322211 1 2468888999999999999999999998887766
Q ss_pred EE
Q psy9150 91 DF 92 (97)
Q Consensus 91 ~~ 92 (97)
.|
T Consensus 73 ~v 74 (74)
T cd05764 73 HI 74 (74)
T ss_pred EC
Confidence 53
No 47
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.73 E-value=4.3e-16 Score=73.70 Aligned_cols=83 Identities=28% Similarity=0.512 Sum_probs=62.6
Q ss_pred CceeeEEEcCCeEEEEEEecccCCCeeEEEe-CCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150 3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFK-DGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY 81 (97)
Q Consensus 3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~ 81 (97)
++.+..+..|+.+.|.|.+.|.|. .+.|++ ++..+....+.... .......|.|..+..+|.|.|+|.+.|..
T Consensus 6 ~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~-----~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~ 79 (92)
T cd05866 6 SLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQ-----KEGVRSRLTIYNANIEDAGIYRCQATDAK 79 (92)
T ss_pred EecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEE-----eCCCeeEEEEecCChHHCEEEEEEEEcCC
Confidence 346778899999999999999887 899998 46666543333321 11123479999999999999999999999
Q ss_pred Cce-eEEEEEE
Q psy9150 82 NVD-TRTFKTD 91 (97)
Q Consensus 82 g~~-~~~~~~~ 91 (97)
|.. .+.+.|.
T Consensus 80 G~~~~~~i~l~ 90 (92)
T cd05866 80 GQTQEATVVLE 90 (92)
T ss_pred CcEEEEEEEEE
Confidence 986 4555554
No 48
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.72 E-value=3.6e-16 Score=73.93 Aligned_cols=79 Identities=19% Similarity=0.316 Sum_probs=62.0
Q ss_pred eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150 5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD 84 (97)
Q Consensus 5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~ 84 (97)
.++.+.+|+.+.|.|.+.|. .|.+.|++++..+.... ..+. . ...+|.|..++..|.|.|.|.+.|..|..
T Consensus 11 ~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~-~~~~-----~--~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 81 (91)
T cd05740 11 GNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPR-LQLS-----N--DNRTLTFNNVTRSDTGHYQCEASNEVSNM 81 (91)
T ss_pred CccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCC-EEEe-----C--CCCEEEECcCChhhCEEEEEEEEcCCCCE
Confidence 45678899999999999999 99999999998875432 2211 1 13479999999999999999999999985
Q ss_pred -eEEEEEEE
Q psy9150 85 -TRTFKTDF 92 (97)
Q Consensus 85 -~~~~~~~~ 92 (97)
...+.|.|
T Consensus 82 ~S~~~~L~V 90 (91)
T cd05740 82 TSDPYILNV 90 (91)
T ss_pred EeeeEEEEe
Confidence 44665554
No 49
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.71 E-value=1.4e-15 Score=72.91 Aligned_cols=89 Identities=24% Similarity=0.357 Sum_probs=59.7
Q ss_pred ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEcccccee-eEEEEEecCc-eEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150 4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYV-NLHEWHYGTD-RIKSKIEIDPATQMDAGIYECYADNMY 81 (97)
Q Consensus 4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~l~i~~~~~~~~g~y~c~~~~~~ 81 (97)
+.++.+.+|+.+.|.|.+.|.|.|.+.|+++|..+...... .......... .....+....+..+|.|.|.|.+.|..
T Consensus 8 p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~ 87 (100)
T cd07693 8 PSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSL 87 (100)
T ss_pred CceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEccc
Confidence 45778889999999999999999999999999887652100 0000000111 111122223346899999999999999
Q ss_pred Cc-eeEEEEEEE
Q psy9150 82 NV-DTRTFKTDF 92 (97)
Q Consensus 82 g~-~~~~~~~~~ 92 (97)
|. ..+...|.+
T Consensus 88 G~~~s~~~~l~v 99 (100)
T cd07693 88 GEAVSRNASLEV 99 (100)
T ss_pred cceecceEEEEe
Confidence 98 566665554
No 50
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.71 E-value=2.9e-15 Score=71.76 Aligned_cols=85 Identities=21% Similarity=0.252 Sum_probs=64.3
Q ss_pred eeeEEEcCCeEEEEEEecccCCC-eeEEEeCCEEcccc--ceeeEEEEEecCceEEEEEEEccCCCCC-CEEEEEEEEcC
Q psy9150 5 FDYEYVLGHKIVFICMAKGKPRP-HITWFKDGVELYTH--MYVNLHEWHYGTDRIKSKIEIDPATQMD-AGIYECYADNM 80 (97)
Q Consensus 5 ~~~~~~~g~~~~l~c~~~~~~~p-~i~w~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~~-~g~y~c~~~~~ 80 (97)
....+.+|+.+.|.|.+.|.|.| .+.|++++..+... .++.+.... ......++|.|..+..+| .|.|.|.+.|.
T Consensus 9 ~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~-~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~ 87 (98)
T cd05758 9 ATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDP-SPGGVLSTLTISNTQESDFQTSYNCTAWNS 87 (98)
T ss_pred CcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEec-CCCceEEEEEECCccccccceeEEEEEEcC
Confidence 35567899999999999999999 59999999887643 233332211 112334679999999855 89999999999
Q ss_pred CCceeEEEEE
Q psy9150 81 YNVDTRTFKT 90 (97)
Q Consensus 81 ~g~~~~~~~~ 90 (97)
.|.....+.|
T Consensus 88 ~G~~~~~~~L 97 (98)
T cd05758 88 FGSGTAIISL 97 (98)
T ss_pred CCcccEEEEe
Confidence 9998877654
No 51
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.71 E-value=2.1e-16 Score=71.54 Aligned_cols=68 Identities=21% Similarity=0.294 Sum_probs=53.7
Q ss_pred EEEEEecccCCCeeEEEeCCEEccccc-eeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEE
Q psy9150 16 VFICMAKGKPRPHITWFKDGVELYTHM-YVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDF 92 (97)
Q Consensus 16 ~l~c~~~~~~~p~i~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~ 92 (97)
.|.|.+.|.|.|.+.|++++.++.... .... . ..+|.|.++..+|.|.|+|.+.|........+.+.+
T Consensus 2 ~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~-----~----~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~ 70 (72)
T cd07702 2 RLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHV-----D----GYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITL 70 (72)
T ss_pred eEEeeEEEcCCCeEEEEECCEECCCCCcEEEe-----C----CCEEEECcCCHHHCEEEEEEEEccccceEeeEEEEE
Confidence 688999999999999999998876532 1111 1 237999999999999999999998777766665554
No 52
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.71 E-value=2.7e-16 Score=71.95 Aligned_cols=71 Identities=24% Similarity=0.377 Sum_probs=53.4
Q ss_pred EEEEEEecccCCCeeEEEeCCEEcccc---ceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEE
Q psy9150 15 IVFICMAKGKPRPHITWFKDGVELYTH---MYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTD 91 (97)
Q Consensus 15 ~~l~c~~~~~~~p~i~w~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~ 91 (97)
+.|.|.+.|.|.|.+.|++++...... .+.... . ....|.|..+..+|.|.|.|.+.|..|.......|.
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~----~---~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~ 73 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVM----P---EDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLT 73 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEe----c---CCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEE
Confidence 368899999999999999987642211 111110 0 123689999999999999999999999988877766
Q ss_pred E
Q psy9150 92 F 92 (97)
Q Consensus 92 ~ 92 (97)
|
T Consensus 74 V 74 (75)
T cd05763 74 V 74 (75)
T ss_pred E
Confidence 5
No 53
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.71 E-value=9.3e-16 Score=71.80 Aligned_cols=80 Identities=28% Similarity=0.497 Sum_probs=62.2
Q ss_pred CceeeEEEcCCeEEEEEEe-cccCCCeeEEEeCCEEccccc-eeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcC
Q psy9150 3 SHFDYEYVLGHKIVFICMA-KGKPRPHITWFKDGVELYTHM-YVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNM 80 (97)
Q Consensus 3 ~~~~~~~~~g~~~~l~c~~-~~~~~p~i~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~ 80 (97)
.+.++.+..|+.+.|.|.+ .+.|.|.+.|++++..+.... ..... . ...|.|..+...|.|.|.|.+.|.
T Consensus 2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~----~----~~~L~I~~~~~~D~G~Y~C~a~N~ 73 (86)
T cd05724 2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIV----D----DGNLLIAEARKSDEGTYKCVATNM 73 (86)
T ss_pred CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEc----c----CCEEEEeECCcccCEEEEEEEEec
Confidence 3567788899999999998 789999999999998876532 22111 1 347999999999999999999999
Q ss_pred CCcee-EEEEE
Q psy9150 81 YNVDT-RTFKT 90 (97)
Q Consensus 81 ~g~~~-~~~~~ 90 (97)
.|... ....|
T Consensus 74 ~G~~~s~~~~l 84 (86)
T cd05724 74 VGERESAAARL 84 (86)
T ss_pred cCceeeeeEEE
Confidence 99764 34433
No 54
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.71 E-value=1.9e-15 Score=70.67 Aligned_cols=78 Identities=17% Similarity=0.218 Sum_probs=59.3
Q ss_pred CeEEEEEEecccCCC--eeEEEeCCEEccccc---eeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEE
Q psy9150 13 HKIVFICMAKGKPRP--HITWFKDGVELYTHM---YVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRT 87 (97)
Q Consensus 13 ~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~ 87 (97)
+++.|.|.+.|.|.| .+.|++++..+.... ..... .......+|.|..++..|.|.|+|.+.|..|...+.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~----~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~ 76 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRM----EVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASAS 76 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEE----EecceEeEEEEccCChhhCeEEEEEEecCCCCEEEE
Confidence 357899999999987 579999998875432 11110 111124589999999999999999999999999998
Q ss_pred EEEEEEE
Q psy9150 88 FKTDFSI 94 (97)
Q Consensus 88 ~~~~~~~ 94 (97)
..|.|..
T Consensus 77 ~~L~V~~ 83 (85)
T cd05854 77 ATLVVRG 83 (85)
T ss_pred EEEEEEC
Confidence 8887753
No 55
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.70 E-value=3.4e-16 Score=70.85 Aligned_cols=70 Identities=29% Similarity=0.581 Sum_probs=54.8
Q ss_pred EEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEE
Q psy9150 15 IVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDF 92 (97)
Q Consensus 15 ~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~ 92 (97)
+.|.|.+.|.|.|.+.|++++..+.... .... .....|.|..+...|.|.|.|.+.|..|.....+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~-~~~~-------~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADR-TKFE-------NFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCc-eeEe-------cCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 3689999999999999999887664321 1110 11347999999999999999999999999888777654
No 56
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.70 E-value=1.4e-15 Score=70.95 Aligned_cols=81 Identities=19% Similarity=0.243 Sum_probs=58.6
Q ss_pred CCeEEEEEEeccc--CCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEE
Q psy9150 12 GHKIVFICMAKGK--PRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFK 89 (97)
Q Consensus 12 g~~~~l~c~~~~~--~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~ 89 (97)
|+.+.|.|.+.+. |.|.+.|.+++..+...................++|.|..++..|+|.|.|.+.|..|.......
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 6789999999998 88899999877654322111100001112234668999999999999999999999998888776
Q ss_pred EEE
Q psy9150 90 TDF 92 (97)
Q Consensus 90 ~~~ 92 (97)
|.|
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 654
No 57
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.69 E-value=1.8e-15 Score=71.44 Aligned_cols=81 Identities=23% Similarity=0.398 Sum_probs=56.8
Q ss_pred CCeEEEEEEecccCCCeeEEEeC----CEEccccceeeEEEEEe----cCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150 12 GHKIVFICMAKGKPRPHITWFKD----GVELYTHMYVNLHEWHY----GTDRIKSKIEIDPATQMDAGIYECYADNMYNV 83 (97)
Q Consensus 12 g~~~~l~c~~~~~~~p~i~w~~~----~~~~~~~~~~~~~~~~~----~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~ 83 (97)
|+.+.|.|.+.|.|.|.+.|+++ +..+............. ........|.|..++.+|.|.|.|.+.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 67899999999999999999984 33332211111100000 00111357999999999999999999999999
Q ss_pred eeEEEEEEE
Q psy9150 84 DTRTFKTDF 92 (97)
Q Consensus 84 ~~~~~~~~~ 92 (97)
......|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 888777665
No 58
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.69 E-value=1.7e-15 Score=72.06 Aligned_cols=68 Identities=26% Similarity=0.502 Sum_probs=52.3
Q ss_pred cCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCC-CCCCEEEEEEEEcCCCcee
Q psy9150 11 LGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPAT-QMDAGIYECYADNMYNVDT 85 (97)
Q Consensus 11 ~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~c~~~~~~g~~~ 85 (97)
.|+.+.|.|.+.|.|.|.+.|++++..+.......... ....|.|..+. ..|.|.|.|.+.|..|...
T Consensus 18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~-------~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~ 86 (94)
T cd05848 18 DEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSL-------IDGNLIISNPSEVKDSGRYQCLATNSIGSIL 86 (94)
T ss_pred CCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEe-------eCCeEEEccCCccCcCEEEEEEEEcCCCeEE
Confidence 46899999999999999999999998886432211110 12467787764 6899999999999999874
No 59
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.68 E-value=4.3e-15 Score=70.42 Aligned_cols=83 Identities=29% Similarity=0.537 Sum_probs=60.2
Q ss_pred ceeeEEEcCCeEEEEEEecccCCCeeEEEe-CCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150 4 HFDYEYVLGHKIVFICMAKGKPRPHITWFK-DGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN 82 (97)
Q Consensus 4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g 82 (97)
+....+..|+.+.|.|.+.|.| +.+.|++ ++..+....+.... .......+|.|..++.+|.|.|.|.+.|..|
T Consensus 7 p~~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~~~~~~~----~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g 81 (92)
T cd04977 7 PSQGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVV----QNDDVRSTLTIYNANIEDAGIYKCVATDAKG 81 (92)
T ss_pred cCcEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEeccCCCEEEE----eCCCCEEEEEEecCCcccCEEEEEEEEcCCC
Confidence 4567788999999999999986 5899997 56555432222211 1222356899999999999999999999865
Q ss_pred c-eeEEEEEE
Q psy9150 83 V-DTRTFKTD 91 (97)
Q Consensus 83 ~-~~~~~~~~ 91 (97)
. ....+.|.
T Consensus 82 ~~~~~sv~l~ 91 (92)
T cd04977 82 TESEATVNLK 91 (92)
T ss_pred CcceeEEEEE
Confidence 4 45555544
No 60
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.68 E-value=1.6e-15 Score=69.33 Aligned_cols=72 Identities=31% Similarity=0.502 Sum_probs=54.3
Q ss_pred EEEEEEecc-cCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEE
Q psy9150 15 IVFICMAKG-KPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTF 88 (97)
Q Consensus 15 ~~l~c~~~~-~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~ 88 (97)
+.|.|.+.| .|.|.+.|++++..+......... ..........|.|..+..+|.|.|.|.+.|..|......
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~--~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 73 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNI--KIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTA 73 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceE--EEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEE
Confidence 368899999 899999999999888654322210 011112246899999999999999999999999877655
No 61
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.68 E-value=2.6e-15 Score=70.91 Aligned_cols=81 Identities=22% Similarity=0.328 Sum_probs=55.9
Q ss_pred CCeEEEEEEecccCCCeeEEEeCC----EEccccc--eeeEEEEEecC--ceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150 12 GHKIVFICMAKGKPRPHITWFKDG----VELYTHM--YVNLHEWHYGT--DRIKSKIEIDPATQMDAGIYECYADNMYNV 83 (97)
Q Consensus 12 g~~~~l~c~~~~~~~p~i~w~~~~----~~~~~~~--~~~~~~~~~~~--~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~ 83 (97)
|+.+.|.|.+.|.|.|.|.|++++ ..+.... ........... ......|.|..++.+|.|.|.|.+.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 578999999999999999999853 2222111 11111000000 011347899999999999999999999999
Q ss_pred eeEEEEEEE
Q psy9150 84 DTRTFKTDF 92 (97)
Q Consensus 84 ~~~~~~~~~ 92 (97)
......|.|
T Consensus 81 ~~~sa~L~V 89 (90)
T cd04974 81 SHHSAWLTV 89 (90)
T ss_pred ccCCEEEEe
Confidence 888777665
No 62
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.67 E-value=2.1e-15 Score=68.84 Aligned_cols=69 Identities=29% Similarity=0.519 Sum_probs=52.2
Q ss_pred EEEEEEecccCCCeeEEEeCCEEcccc--ceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce-eEEEEEE
Q psy9150 15 IVFICMAKGKPRPHITWFKDGVELYTH--MYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD-TRTFKTD 91 (97)
Q Consensus 15 ~~l~c~~~~~~~p~i~w~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~-~~~~~~~ 91 (97)
+.|.|.+.|.|.|.+.|++++..+... .+.... . ...|.|..+...|.|.|.|.+.|..|.. .....|.
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~----~----~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~ 72 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQL----R----SGALQIENSEESDQGKYECVATNSAGTRYSAPANLY 72 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEc----C----CcEEEECCCChhhCEEEEEEEECCCCceEcccEEEE
Confidence 368999999999999999999877532 222211 1 2368999999999999999999999985 4444443
No 63
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.67 E-value=1.1e-14 Score=67.91 Aligned_cols=82 Identities=28% Similarity=0.525 Sum_probs=63.0
Q ss_pred eEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeE
Q psy9150 7 YEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTR 86 (97)
Q Consensus 7 ~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~ 86 (97)
..+..|+.+.|.|.+.+.|.+.+.|++++..+.......... .......|.|..+..+|.|.|.|.+.|..|....
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~----~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~ 79 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYK----VRKKKWTLILESVVPSDSGKYTCIVENKYGSINH 79 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEE----ccCcEEEEEEeECCcccCEEEEEEEEECCceEEE
Confidence 456789999999999999999999999988775432222111 1112346889999999999999999999999888
Q ss_pred EEEEEE
Q psy9150 87 TFKTDF 92 (97)
Q Consensus 87 ~~~~~~ 92 (97)
.+.|.+
T Consensus 80 ~~~l~v 85 (85)
T cd05729 80 TYKVDV 85 (85)
T ss_pred EEEEeC
Confidence 877653
No 64
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.67 E-value=1.9e-15 Score=71.80 Aligned_cols=81 Identities=20% Similarity=0.272 Sum_probs=61.5
Q ss_pred eeeEEEcCCeEEEEEEecc-----cCCCeeEEEeCCEEcccc--ceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEE
Q psy9150 5 FDYEYVLGHKIVFICMAKG-----KPRPHITWFKDGVELYTH--MYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYA 77 (97)
Q Consensus 5 ~~~~~~~g~~~~l~c~~~~-----~~~p~i~w~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~ 77 (97)
....+.+|+.+.|.|.+.+ .|.|.+.|++++..+... ...+... ....|.|..+..+|+|.|.|.+
T Consensus 7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~-------~~~~L~I~~~~~~DsG~Y~C~~ 79 (94)
T cd05756 7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ-------QKDLLWFLPAALEDSGLYTCVV 79 (94)
T ss_pred eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeee-------cCCeEEEccCCcccCeEEEEEE
Confidence 3566779999999999988 688999999988654321 1111110 1347899999999999999999
Q ss_pred EcCCCceeEEEEEEE
Q psy9150 78 DNMYNVDTRTFKTDF 92 (97)
Q Consensus 78 ~~~~g~~~~~~~~~~ 92 (97)
.|..|.....+.|.|
T Consensus 80 ~N~~g~~~~~~~L~v 94 (94)
T cd05756 80 RNSTYCMKVSISLTV 94 (94)
T ss_pred cCCCccEEEEEEEEC
Confidence 999998887776653
No 65
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.67 E-value=1.2e-14 Score=69.19 Aligned_cols=80 Identities=20% Similarity=0.306 Sum_probs=56.8
Q ss_pred ceeeEEEcC---CeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCC-CCCCEEEEEEEEc
Q psy9150 4 HFDYEYVLG---HKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPAT-QMDAGIYECYADN 79 (97)
Q Consensus 4 ~~~~~~~~g---~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~c~~~~ 79 (97)
+.++.+.+| +.+.|.|.+.|.|.|.+.|+++|..+.......... ....|.|..+. ..|.|.|.|.+.|
T Consensus 8 P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~-------~~g~L~I~~~~~~~D~G~Y~C~A~N 80 (94)
T cd05850 8 PSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTL-------VAGNLVINNPQKARDAGSYQCLAIN 80 (94)
T ss_pred CCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEE-------ECCeEEEccCCccCcCEEEEEEEEc
Confidence 344555555 579999999999999999999998886432111110 02367777654 5899999999999
Q ss_pred CCCceeE-EEEE
Q psy9150 80 MYNVDTR-TFKT 90 (97)
Q Consensus 80 ~~g~~~~-~~~~ 90 (97)
..|.... ...|
T Consensus 81 ~~G~~~s~~a~l 92 (94)
T cd05850 81 RCGTVVSREANL 92 (94)
T ss_pred CcCcEEEEEEEE
Confidence 9998643 4433
No 66
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.66 E-value=2.2e-15 Score=69.06 Aligned_cols=74 Identities=27% Similarity=0.468 Sum_probs=57.0
Q ss_pred EEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEEE
Q psy9150 15 IVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFS 93 (97)
Q Consensus 15 ~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~~ 93 (97)
+.|.|.+.|.|.|.+.|++++..+.......... .. ....|.|..+...|.|.|.|.+.|..|.....+.|.|.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~--~~---~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTL--IA---NGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEE--eC---CCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 3688999999999999999998876433222211 01 12469999999999999999999999998888877654
No 67
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.66 E-value=1e-15 Score=70.88 Aligned_cols=77 Identities=29% Similarity=0.378 Sum_probs=55.0
Q ss_pred CCeEEEEEEecccCCCeeEEEeCCE---Ecc-ccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEE
Q psy9150 12 GHKIVFICMAKGKPRPHITWFKDGV---ELY-THMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRT 87 (97)
Q Consensus 12 g~~~~l~c~~~~~~~p~i~w~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~ 87 (97)
|+.+.|.|.+.|.|.|.+.|++++. .+. ........ .. ......|.|..+..+|.|.|.|.+.|..|.....
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~-~~---~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 76 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGN-VV---VTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRAN 76 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCC-EE---EccccEEEEccCCcccCEEEEEEEecCCceEEEE
Confidence 6789999999999999999999632 111 00000000 00 0013479999999999999999999999999888
Q ss_pred EEEEE
Q psy9150 88 FKTDF 92 (97)
Q Consensus 88 ~~~~~ 92 (97)
+.|.|
T Consensus 77 ~~l~v 81 (81)
T cd05765 77 FPLSV 81 (81)
T ss_pred EEEeC
Confidence 87653
No 68
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.65 E-value=1.6e-14 Score=68.82 Aligned_cols=82 Identities=30% Similarity=0.454 Sum_probs=58.1
Q ss_pred ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccC-----CCCCCEEEEEEEE
Q psy9150 4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA-----TQMDAGIYECYAD 78 (97)
Q Consensus 4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~~~g~y~c~~~ 78 (97)
+.+..+..|+.+.|.|.+.|.|.|.+.|+++|..+.......... .. ..++.+..+ ...|.|.|.|.+.
T Consensus 6 P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~--~~----~~~l~i~~v~~~~~~~~D~G~Y~C~a~ 79 (95)
T cd05722 6 PSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQ--LP----NGSLLITSVVHSKHNKPDEGFYQCVAQ 79 (95)
T ss_pred CCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEE--cc----CCeEEEeeeeccCCCCCcCEEEEEEEE
Confidence 456778899999999999999999999999998876433211100 01 123344333 6789999999999
Q ss_pred cC-CCce-eEEEEEE
Q psy9150 79 NM-YNVD-TRTFKTD 91 (97)
Q Consensus 79 ~~-~g~~-~~~~~~~ 91 (97)
|. .|.. +..+.|.
T Consensus 80 N~~~G~~~s~~~~l~ 94 (95)
T cd05722 80 NDSLGSIVSRTARLT 94 (95)
T ss_pred CCccCcEEEeeeEEe
Confidence 99 8886 4455443
No 69
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.65 E-value=5.7e-15 Score=68.35 Aligned_cols=71 Identities=23% Similarity=0.367 Sum_probs=55.8
Q ss_pred CceeeEEEcCCeEEEEEEecccCCC-eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150 3 SHFDYEYVLGHKIVFICMAKGKPRP-HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY 81 (97)
Q Consensus 3 ~~~~~~~~~g~~~~l~c~~~~~~~p-~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~ 81 (97)
.+.++.+..|+.+.|.|.+.|.|.| .+.|+++|..+.... . ...+.|.+..+ .|.|.|.|.+.|..
T Consensus 4 ~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~~--~---------~~~s~L~i~~~--~d~g~Y~C~A~N~~ 70 (81)
T cd05749 4 EPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDPP--A---------PSPSVLNVPGL--NETSKFSCEAHNAK 70 (81)
T ss_pred CCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCCC--C---------CCCCEEEEccc--cCCeEEEEEEEecc
Confidence 4567889999999999999999999 799999998875411 0 01246777766 46799999999999
Q ss_pred CceeE
Q psy9150 82 NVDTR 86 (97)
Q Consensus 82 g~~~~ 86 (97)
|....
T Consensus 71 G~~~s 75 (81)
T cd05749 71 GVTTS 75 (81)
T ss_pred CcEEe
Confidence 97643
No 70
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.64 E-value=6.4e-14 Score=65.35 Aligned_cols=80 Identities=20% Similarity=0.364 Sum_probs=55.5
Q ss_pred CCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC--ceeEEEE
Q psy9150 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN--VDTRTFK 89 (97)
Q Consensus 12 g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g--~~~~~~~ 89 (97)
|+.+.|.|.+.+.|.+.+.|+++++........ ............++|.|..++.+|+|.|.|.+.|..+ .....+.
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~ 79 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPE-VEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVN 79 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceE-EEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEE
Confidence 678999999999999999999876543211110 0011112233467899999999999999999998876 3455555
Q ss_pred EEE
Q psy9150 90 TDF 92 (97)
Q Consensus 90 ~~~ 92 (97)
|.|
T Consensus 80 i~V 82 (84)
T cd05861 80 ITV 82 (84)
T ss_pred EEE
Confidence 544
No 71
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.64 E-value=1.2e-14 Score=69.01 Aligned_cols=65 Identities=23% Similarity=0.430 Sum_probs=50.9
Q ss_pred CeEEEEEEecccCCCeeEEEeCCEEcccc-ceeeEEEEEecCceEEEEEEEccCC-CCCCEEEEEEEEcCCCceeE
Q psy9150 13 HKIVFICMAKGKPRPHITWFKDGVELYTH-MYVNLHEWHYGTDRIKSKIEIDPAT-QMDAGIYECYADNMYNVDTR 86 (97)
Q Consensus 13 ~~~~l~c~~~~~~~p~i~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~c~~~~~~g~~~~ 86 (97)
..+.|.|.+.|.|.|.+.|++++..+... .+.... ...|.|..+. ..|.|.|.|.+.|..|....
T Consensus 20 ~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~---------~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s 86 (93)
T cd05849 20 GKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMV---------GGNLVINNPDKYKDAGRYVCIVSNIYGKVRS 86 (93)
T ss_pred CeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEE---------CCEEEECcCCcCCCCEEEEEEEEeCcceEEE
Confidence 47999999999999999999999887532 222111 3468888774 68999999999999998643
No 72
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.63 E-value=2.2e-14 Score=67.08 Aligned_cols=79 Identities=20% Similarity=0.246 Sum_probs=57.1
Q ss_pred eEEEEEEecccCCC--eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEE
Q psy9150 14 KIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTD 91 (97)
Q Consensus 14 ~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~ 91 (97)
.+.|.|.+.|.|.| .+.|++++..+............ ........|.|..++..|.|.|.|.+.|..|.......|.
T Consensus 2 ~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 2 SITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRV-GGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred cEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEE-ecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 57899999999887 56899999887543210000000 0011245799999999999999999999999988887776
Q ss_pred EE
Q psy9150 92 FS 93 (97)
Q Consensus 92 ~~ 93 (97)
|.
T Consensus 81 V~ 82 (85)
T cd04970 81 VR 82 (85)
T ss_pred EE
Confidence 64
No 73
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.61 E-value=6.3e-14 Score=66.03 Aligned_cols=82 Identities=18% Similarity=0.269 Sum_probs=59.4
Q ss_pred CceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccce--eeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcC
Q psy9150 3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMY--VNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNM 80 (97)
Q Consensus 3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~ 80 (97)
++..+.+.+|+.+.|.|.+.+ |.+.+.|++++..+..... .+.. .. ...|.|..+..+|.|.|.|.+.+.
T Consensus 2 ~~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~---~~----~~~L~I~~~~~~D~G~Y~C~a~~~ 73 (89)
T cd04979 2 EEKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLL---VT----EDGLLIRSVSPADAGVYTCQSVEH 73 (89)
T ss_pred cceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEE---Ec----CCCEEEccCCHHHCEEEEEEEecC
Confidence 456778899999999999977 8889999999876654321 1111 01 235889999999999999999876
Q ss_pred CC-ceeEEEEEEE
Q psy9150 81 YN-VDTRTFKTDF 92 (97)
Q Consensus 81 ~g-~~~~~~~~~~ 92 (97)
.+ .....+.|.|
T Consensus 74 ~~~~~~~~~~l~V 86 (89)
T cd04979 74 GFKQTLATYSLNV 86 (89)
T ss_pred ccceeEeEEEEEE
Confidence 54 3455555554
No 74
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.61 E-value=2.7e-14 Score=66.53 Aligned_cols=79 Identities=15% Similarity=0.147 Sum_probs=58.0
Q ss_pred eEEEEEEecc--cCCCeeEEEeCCEEccccc-eeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEE
Q psy9150 14 KIVFICMAKG--KPRPHITWFKDGVELYTHM-YVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKT 90 (97)
Q Consensus 14 ~~~l~c~~~~--~~~p~i~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~ 90 (97)
.+.|.|.+.+ .+.+.+.|+++|+.+.... ..... ........+.|.|.+++..|.|.|+|.+.|..+.......|
T Consensus 2 ~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~--~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L 79 (85)
T cd05853 2 SIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFE--RVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADL 79 (85)
T ss_pred cEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEE--EeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEE
Confidence 5789999966 5578899999999986321 11111 10111123479999999999999999999999999888877
Q ss_pred EEEE
Q psy9150 91 DFSI 94 (97)
Q Consensus 91 ~~~~ 94 (97)
.|..
T Consensus 80 ~V~~ 83 (85)
T cd05853 80 IVRG 83 (85)
T ss_pred EEec
Confidence 7754
No 75
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.60 E-value=3.1e-14 Score=66.53 Aligned_cols=77 Identities=27% Similarity=0.409 Sum_probs=60.3
Q ss_pred CceeeEEEcCCeEEEEEEecc-cCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150 3 SHFDYEYVLGHKIVFICMAKG-KPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY 81 (97)
Q Consensus 3 ~~~~~~~~~g~~~~l~c~~~~-~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~ 81 (97)
++..+.+..|+.+.|.|.+.+ .|.+.+.|++++..+.... . .....|.|..++.+|.|.|.|.+.|..
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~--~---------~~~~~L~I~~v~~~DsG~Y~C~a~n~~ 75 (85)
T cd05754 7 EPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA--M---------DFNGILTIRNVQLSDAGTYVCTGSNML 75 (85)
T ss_pred CCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc--c---------ccCCEEEECCCCHHHCEEEEEEEeccC
Confidence 456778899999999999864 6888999999876543211 0 013479999999999999999999999
Q ss_pred CceeEEEEE
Q psy9150 82 NVDTRTFKT 90 (97)
Q Consensus 82 g~~~~~~~~ 90 (97)
|.......|
T Consensus 76 g~~~~~~~l 84 (85)
T cd05754 76 DTDEATATL 84 (85)
T ss_pred CeEeEEEEE
Confidence 988776544
No 76
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.59 E-value=1.2e-14 Score=66.79 Aligned_cols=67 Identities=27% Similarity=0.476 Sum_probs=47.4
Q ss_pred EEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCC----CCCCEEEEEEEEcCCCceeE
Q psy9150 15 IVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPAT----QMDAGIYECYADNMYNVDTR 86 (97)
Q Consensus 15 ~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~----~~~~g~y~c~~~~~~g~~~~ 86 (97)
+.|.|.+.|.|.|.+.|++++..+........... . ....|.|..+. .+|.|.|.|.+.|..|....
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~--~---~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMK--P---DSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEe--C---CCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 36889999999999999999988754321111110 0 13466777664 36799999999999998643
No 77
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.59 E-value=6.7e-14 Score=66.20 Aligned_cols=68 Identities=25% Similarity=0.491 Sum_probs=50.7
Q ss_pred CCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCC-CCCCEEEEEEEEcCCCceeE
Q psy9150 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPAT-QMDAGIYECYADNMYNVDTR 86 (97)
Q Consensus 12 g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~c~~~~~~g~~~~ 86 (97)
+..+.|.|.+.|.|.|.+.|++++..+.......... ....|.|..+. ..|.|.|+|.+.|..|....
T Consensus 19 ~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~-------~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S 87 (91)
T cd04967 19 EGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSL-------VGGNLVISNPSKAKDAGRYQCLASNIVGTVLS 87 (91)
T ss_pred CCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEE-------ECCEEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence 4579999999999999999999998874322111110 12367787766 48999999999999997643
No 78
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.58 E-value=6.2e-14 Score=64.39 Aligned_cols=65 Identities=26% Similarity=0.484 Sum_probs=46.3
Q ss_pred EEEEEEecccCCCeeEEEeCCEEcccc--ceeeEEEEEecCceEEEEEEEccCC----CCCCEEEEEEEEcCCCceeE
Q psy9150 15 IVFICMAKGKPRPHITWFKDGVELYTH--MYVNLHEWHYGTDRIKSKIEIDPAT----QMDAGIYECYADNMYNVDTR 86 (97)
Q Consensus 15 ~~l~c~~~~~~~p~i~w~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~----~~~~g~y~c~~~~~~g~~~~ 86 (97)
+.|.|.+.|.|.|.+.|++++..+... .+..+. . ...+|.|..+. ..|.|.|.|.+.|..|....
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~----~---~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMR----R---RSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALS 71 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEe----C---CCceEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence 368999999999999999999876422 222211 0 13467776653 24689999999999998654
No 79
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.58 E-value=1.6e-14 Score=66.68 Aligned_cols=69 Identities=22% Similarity=0.372 Sum_probs=49.3
Q ss_pred EEEEEEecccCCCeeEEEeCCEEccc--------cceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce-e
Q psy9150 15 IVFICMAKGKPRPHITWFKDGVELYT--------HMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD-T 85 (97)
Q Consensus 15 ~~l~c~~~~~~~p~i~w~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~-~ 85 (97)
+.|.|.+.|.|.|.+.|++++..... ..+... ....+|.|..+..+|.|.|.|.+.|..|.. .
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~--------~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s 72 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQL--------LSNGSLLIKHVLEEDSGYYLCKVSNDVGADAS 72 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEE--------ecCCeEEECcCCcccCEEEEEEEEeCCCCCCc
Confidence 36899999999999999986432111 111111 013579999999999999999999999986 4
Q ss_pred EEEEEE
Q psy9150 86 RTFKTD 91 (97)
Q Consensus 86 ~~~~~~ 91 (97)
+...|.
T Consensus 73 ~~~~l~ 78 (79)
T cd05734 73 KSMVLT 78 (79)
T ss_pred eEEEEe
Confidence 555443
No 80
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.57 E-value=1.6e-13 Score=64.95 Aligned_cols=79 Identities=20% Similarity=0.233 Sum_probs=59.3
Q ss_pred eeeEEEcCCeEEEEEEecc-----cCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEc
Q psy9150 5 FDYEYVLGHKIVFICMAKG-----KPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADN 79 (97)
Q Consensus 5 ~~~~~~~g~~~~l~c~~~~-----~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~ 79 (97)
....+..|....|.|...+ .|.|.+.|++++.++........ ....|.|..+..+|+|.|+|.+.|
T Consensus 3 ~~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~---------~~~~L~I~~v~~~DsG~YtC~~~n 73 (92)
T cd05757 3 YKQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV---------KGSKLLIQNVTEEDAGNYTCKLTF 73 (92)
T ss_pred ceEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe---------cCCEEEEeeCChhhCEEEEEEEEe
Confidence 3456778999999998743 25789999999998865432211 145799999999999999999999
Q ss_pred CCCceeEEEEEEE
Q psy9150 80 MYNVDTRTFKTDF 92 (97)
Q Consensus 80 ~~g~~~~~~~~~~ 92 (97)
..+.....++..+
T Consensus 74 ~~~~~~~~~t~t~ 86 (92)
T cd05757 74 THNGKQYNVTRTI 86 (92)
T ss_pred cCCCEEEEEEEEE
Confidence 9887665544443
No 81
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.57 E-value=6.4e-14 Score=64.34 Aligned_cols=67 Identities=25% Similarity=0.462 Sum_probs=46.0
Q ss_pred EEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCC----CCCEEEEEEEEcCCCceeE
Q psy9150 15 IVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQ----MDAGIYECYADNMYNVDTR 86 (97)
Q Consensus 15 ~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~~~g~y~c~~~~~~g~~~~ 86 (97)
+.|.|.+.|.|.|.+.|++++..+.......... .. ...+|.|..+.. .|.|.|.|.+.|..|....
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~---~~--~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTM---KP--NTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEE---eC--CCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 3689999999999999999998774322111110 00 123566665553 3689999999999998654
No 82
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.57 E-value=2.9e-13 Score=63.29 Aligned_cols=68 Identities=24% Similarity=0.338 Sum_probs=54.1
Q ss_pred ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccc-eeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150 4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHM-YVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY 81 (97)
Q Consensus 4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~ 81 (97)
+.+..+..|+.+.|.|.+.+ +.+.+.|+++|..+.... +..+. ...|.|.+++..|.|.|+|.+.+..
T Consensus 3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~---------~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLY---------RDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEE---------CCcEEEeCCCHHHCEEEEEEEEecc
Confidence 45778899999999999854 678899999999987542 22211 3368999999999999999988754
No 83
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.56 E-value=1e-12 Score=62.73 Aligned_cols=86 Identities=19% Similarity=0.214 Sum_probs=63.8
Q ss_pred ceeeEEEcCCeEEEEEEecccCCCe-eEEEeCCEEcccc--ceeeEEEEEecCceEEEEEEEccCCCCC-CEEEEEEEEc
Q psy9150 4 HFDYEYVLGHKIVFICMAKGKPRPH-ITWFKDGVELYTH--MYVNLHEWHYGTDRIKSKIEIDPATQMD-AGIYECYADN 79 (97)
Q Consensus 4 ~~~~~~~~g~~~~l~c~~~~~~~p~-i~w~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~~-~g~y~c~~~~ 79 (97)
+....+.+|+.+.|.|.+.+.|.|. +.|..++..+... .++.+... .......+.|.|..+...| .|.|.|.+.|
T Consensus 8 ~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~-~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N 86 (98)
T cd05898 8 EQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERT-STGSGVLSTLTINNIMEADFQTHYNCTAWN 86 (98)
T ss_pred CceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEE-ccCCCcEEEEEECCCccccCCcEEEEEEEe
Confidence 4567788999999999998778764 7898877665432 33333221 1233456789999998777 6899999999
Q ss_pred CCCceeEEEEE
Q psy9150 80 MYNVDTRTFKT 90 (97)
Q Consensus 80 ~~g~~~~~~~~ 90 (97)
..|.+...+.|
T Consensus 87 ~~G~d~~~i~L 97 (98)
T cd05898 87 SFGSGTAIIQL 97 (98)
T ss_pred CCccceEEEEe
Confidence 99999887765
No 84
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.56 E-value=4.1e-13 Score=63.92 Aligned_cols=71 Identities=17% Similarity=0.264 Sum_probs=53.0
Q ss_pred eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccc--------cceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEE
Q psy9150 5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYT--------HMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECY 76 (97)
Q Consensus 5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~ 76 (97)
.++.+..|+.+.|.|.+.+.|.|.+.|++++..+.. ..++... ........|.|.++..+|.|.|.|.
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~----~~~~~~~~L~I~nV~~~D~G~YtC~ 80 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLV----KSTPTELIISISNVQLSDEGEYTCS 80 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEE----eCCCceEEEEECCCCcccCEEEEEE
Confidence 578899999999999999999999999997753311 1111110 1111246899999999999999999
Q ss_pred EEc
Q psy9150 77 ADN 79 (97)
Q Consensus 77 ~~~ 79 (97)
+..
T Consensus 81 ~~t 83 (95)
T cd05882 81 IFT 83 (95)
T ss_pred EEe
Confidence 876
No 85
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.55 E-value=2.3e-13 Score=62.33 Aligned_cols=71 Identities=24% Similarity=0.439 Sum_probs=51.0
Q ss_pred EEEEEEec-ccCCCeeEEEeCCEEccccce--eeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEE
Q psy9150 15 IVFICMAK-GKPRPHITWFKDGVELYTHMY--VNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTF 88 (97)
Q Consensus 15 ~~l~c~~~-~~~~p~i~w~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~ 88 (97)
+.|.|.+. +.|.+.+.|++++..+..... ..... ........|.|..+...|+|.|.|.+.|..|......
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~---~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~ 74 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKI---RKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTA 74 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEE---EeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEE
Confidence 36889986 467789999999988753211 11110 1111245799999999999999999999999877655
No 86
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.55 E-value=1.7e-12 Score=61.91 Aligned_cols=89 Identities=15% Similarity=0.192 Sum_probs=69.6
Q ss_pred eeeEEEcCCeEEEEEEecccCCCe-eEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150 5 FDYEYVLGHKIVFICMAKGKPRPH-ITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV 83 (97)
Q Consensus 5 ~~~~~~~g~~~~l~c~~~~~~~p~-i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~ 83 (97)
..+.+.+|+.+.|.|.+.++|.|. +.|.+++..+................++.+.|.+.+++.++.|.|+|.+.|....
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~ 90 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence 356788999999999999999998 9999987765433221111111133457889999999999999999999999999
Q ss_pred eeEEEEEEEE
Q psy9150 84 DTRTFKTDFS 93 (97)
Q Consensus 84 ~~~~~~~~~~ 93 (97)
....|.|.+.
T Consensus 91 ~s~tF~l~v~ 100 (101)
T cd05860 91 ASVTFNVYVN 100 (101)
T ss_pred EEEEEEEEEe
Confidence 9999988764
No 87
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.52 E-value=1.2e-12 Score=62.39 Aligned_cols=74 Identities=16% Similarity=0.239 Sum_probs=53.4
Q ss_pred CceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEc--------cccceeeEEEEEecCceEEEEEEEccCCCCCCEEEE
Q psy9150 3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVEL--------YTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYE 74 (97)
Q Consensus 3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~ 74 (97)
...++.+.+|+.+.|.|.+.+.|.+.+.|++.++.. ....++... .......+|.|..++.+|.|.|.
T Consensus 3 ~~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~----~~~~~~~sL~I~~v~~~DsG~Y~ 78 (95)
T cd07701 3 LTQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELV----RASWHELSISISDVSLSDEGQYT 78 (95)
T ss_pred ccceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEE----ECCCCcEEEEECcCCcccCEEEE
Confidence 456889999999999999999999999998643211 111222211 11112457999999999999999
Q ss_pred EEEEcC
Q psy9150 75 CYADNM 80 (97)
Q Consensus 75 c~~~~~ 80 (97)
|.+.+.
T Consensus 79 C~~~t~ 84 (95)
T cd07701 79 CSLFTM 84 (95)
T ss_pred EEeEee
Confidence 998874
No 88
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.50 E-value=6.7e-13 Score=61.05 Aligned_cols=62 Identities=23% Similarity=0.409 Sum_probs=49.6
Q ss_pred CceeeEEEcCCeEEEEEEecccCC-CeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcC
Q psy9150 3 SHFDYEYVLGHKIVFICMAKGKPR-PHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNM 80 (97)
Q Consensus 3 ~~~~~~~~~g~~~~l~c~~~~~~~-p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~ 80 (97)
.+....+.+|+.+.|.|.+.+.|. +.+.|++++..+... ...|.|..+ .+|+|.|.|.+.+.
T Consensus 6 ~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~~---------------~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 6 DPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLETT---------------TNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred CCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeecc---------------CCeEEEeec-ccCCEEeEEECCCC
Confidence 345567889999999999988775 469999999876321 236788888 89999999999875
No 89
>KOG3513|consensus
Probab=99.49 E-value=7.6e-13 Score=82.92 Aligned_cols=84 Identities=25% Similarity=0.477 Sum_probs=71.3
Q ss_pred CceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccce---eeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEc
Q psy9150 3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMY---VNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADN 79 (97)
Q Consensus 3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~ 79 (97)
...+..+..|+++.+.|.+.|.|.|.+.|+++|.++....+ ..+. ..+|.|..+...|+|.|+|.+.|
T Consensus 337 ~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~---------~g~L~is~v~~~dsg~YQC~A~N 407 (1051)
T KOG3513|consen 337 KPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKID---------DGTLIISNVQESDSGVYQCIAEN 407 (1051)
T ss_pred ccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEe---------CCEEEEEecccccCeEEEeeeec
Confidence 34677888999999999999999999999999999875443 2222 45899999999999999999999
Q ss_pred CCCceeEEEEEEEEEe
Q psy9150 80 MYNVDTRTFKTDFSIT 95 (97)
Q Consensus 80 ~~g~~~~~~~~~~~~~ 95 (97)
..|.......|.|...
T Consensus 408 k~G~i~anA~L~V~a~ 423 (1051)
T KOG3513|consen 408 KYGTIYANAELKVLAS 423 (1051)
T ss_pred ccceEeeeeEEEEEcc
Confidence 9999988888887653
No 90
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.46 E-value=2.2e-12 Score=56.45 Aligned_cols=63 Identities=35% Similarity=0.631 Sum_probs=48.8
Q ss_pred cCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150 11 LGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN 82 (97)
Q Consensus 11 ~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g 82 (97)
+|+.+.|.|.+.+.+.+.+.|++++..+.... ... .....|.|..+...|.|.|.|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~--~~~-------~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPESN--RLS-------ASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCCCC--EEe-------cCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 47889999998888899999999888776211 111 1134799999999999999999988754
No 91
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.45 E-value=7.7e-13 Score=62.81 Aligned_cols=75 Identities=13% Similarity=0.258 Sum_probs=55.8
Q ss_pred CceeeEEEcCCeEEEEEEe-cccCCCeeEEEeCCEEccc--cceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEc
Q psy9150 3 SHFDYEYVLGHKIVFICMA-KGKPRPHITWFKDGVELYT--HMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADN 79 (97)
Q Consensus 3 ~~~~~~~~~g~~~~l~c~~-~~~~~p~i~w~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~ 79 (97)
+...+.+.+|..+.|.|.. .|.|.+.+.|++++..+.. ..+..+. . ....|.+..+...|.|.|.|.+.|
T Consensus 9 ~~~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~----~---~~G~L~fs~v~~~D~g~Y~C~A~n 81 (96)
T cd05727 9 ERDEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVS----Q---TNGNLYIAKVEASDRGNYSCFVSS 81 (96)
T ss_pred CcCceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEe----C---CCCcEEEeecCHhhCceeEEEEEe
Confidence 4456778899999999976 7889999999998765321 1111111 1 135799999999999999999999
Q ss_pred CCCce
Q psy9150 80 MYNVD 84 (97)
Q Consensus 80 ~~g~~ 84 (97)
.....
T Consensus 82 ~~~~~ 86 (96)
T cd05727 82 PSSTK 86 (96)
T ss_pred cccCC
Confidence 86544
No 92
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.44 E-value=1.5e-11 Score=58.11 Aligned_cols=78 Identities=15% Similarity=0.282 Sum_probs=53.0
Q ss_pred eeeEEEcCCeEEEEEEecccCCCeeEEEeC--CEEcc----ccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEE
Q psy9150 5 FDYEYVLGHKIVFICMAKGKPRPHITWFKD--GVELY----THMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYAD 78 (97)
Q Consensus 5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~ 78 (97)
..+...+|+.+.|.|.. +.|.|.+.|++. +.... ...+... ....|.|..+..+|+|.|+|.+.
T Consensus 4 ~~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~---------~~~~L~I~~~~~~DsG~Y~C~a~ 73 (91)
T cd05871 4 KVVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIH---------TERGLLLRSLQRSDAGVYTCTAV 73 (91)
T ss_pred eEEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEE---------ecCeEEEeeCChhHCEEEEEEEE
Confidence 45668899999999996 578899999983 22211 1111111 13469999999999999999998
Q ss_pred c-CCCceeEEEEEEE
Q psy9150 79 N-MYNVDTRTFKTDF 92 (97)
Q Consensus 79 ~-~~g~~~~~~~~~~ 92 (97)
+ ..+.......|.|
T Consensus 74 ~~~~~~~~~~~~l~v 88 (91)
T cd05871 74 EHSFSQTLAKYTLHV 88 (91)
T ss_pred ccCCeEEEEEEEEEE
Confidence 4 5554555444443
No 93
>smart00409 IG Immunoglobulin.
Probab=99.43 E-value=5.7e-11 Score=54.79 Aligned_cols=83 Identities=24% Similarity=0.413 Sum_probs=61.8
Q ss_pred eeeEEEcCCeEEEEEEecccCCCeeEEEeC-CEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150 5 FDYEYVLGHKIVFICMAKGKPRPHITWFKD-GVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV 83 (97)
Q Consensus 5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~ 83 (97)
..+.+..|+.+.|.|.+.+.+.+.+.|+++ +..+.......... ... ...|.+..++..|.|.|.|.+.+..+.
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~---~~~--~~~l~i~~~~~~d~G~Y~C~v~~~~~~ 76 (86)
T smart00409 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSR---SGS--NSTLTISNVTPEDSGTYTCAATNSSGS 76 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEE---cCC--eeEEEEEeeccccCeEEEEEEEcCCCe
Confidence 356778999999999998888889999997 77665333332221 111 457999999999999999999988887
Q ss_pred eeEEEEEEE
Q psy9150 84 DTRTFKTDF 92 (97)
Q Consensus 84 ~~~~~~~~~ 92 (97)
....+.|.|
T Consensus 77 ~~~~~~l~V 85 (86)
T smart00409 77 ASSTTTLTV 85 (86)
T ss_pred EEEEEEEEE
Confidence 666655543
No 94
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.43 E-value=5.7e-11 Score=54.79 Aligned_cols=83 Identities=24% Similarity=0.413 Sum_probs=61.8
Q ss_pred eeeEEEcCCeEEEEEEecccCCCeeEEEeC-CEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150 5 FDYEYVLGHKIVFICMAKGKPRPHITWFKD-GVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV 83 (97)
Q Consensus 5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~ 83 (97)
..+.+..|+.+.|.|.+.+.+.+.+.|+++ +..+.......... ... ...|.+..++..|.|.|.|.+.+..+.
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~---~~~--~~~l~i~~~~~~d~G~Y~C~v~~~~~~ 76 (86)
T smart00410 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSR---SGS--NSTLTISNVTPEDSGTYTCAATNSSGS 76 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEE---cCC--eeEEEEEeeccccCeEEEEEEEcCCCe
Confidence 356778999999999998888889999997 77665333332221 111 457999999999999999999988887
Q ss_pred eeEEEEEEE
Q psy9150 84 DTRTFKTDF 92 (97)
Q Consensus 84 ~~~~~~~~~ 92 (97)
....+.|.|
T Consensus 77 ~~~~~~l~V 85 (86)
T smart00410 77 ASSTTTLTV 85 (86)
T ss_pred EEEEEEEEE
Confidence 666655543
No 95
>KOG4194|consensus
Probab=99.43 E-value=7e-13 Score=79.47 Aligned_cols=86 Identities=26% Similarity=0.343 Sum_probs=68.9
Q ss_pred CceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEE-cccc--ceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEc
Q psy9150 3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVE-LYTH--MYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADN 79 (97)
Q Consensus 3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~ 79 (97)
.+.+++...|+.+.+.|.+.|.|.|.|.|.++|.. ++.. .+..+... ...+.|.+++.+|.|.|+|.+.|
T Consensus 618 tP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmpe-------dd~f~Itnvk~eD~GiYtC~A~n 690 (873)
T KOG4194|consen 618 TPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPE-------DDVFFITNVKIEDQGIYTCTAQN 690 (873)
T ss_pred CcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecCC-------CCEEEEecccccccceeEEeeec
Confidence 35688899999999999999999999999998765 4433 23332211 34789999999999999999999
Q ss_pred CCCceeEEEEEEEEEe
Q psy9150 80 MYNVDTRTFKTDFSIT 95 (97)
Q Consensus 80 ~~g~~~~~~~~~~~~~ 95 (97)
..|..+...++.|...
T Consensus 691 ~AG~isanAtL~V~e~ 706 (873)
T KOG4194|consen 691 VAGQISANATLTVLET 706 (873)
T ss_pred cccceeeceEEEEecC
Confidence 9999888887777554
No 96
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.42 E-value=9.5e-12 Score=67.62 Aligned_cols=69 Identities=25% Similarity=0.436 Sum_probs=53.2
Q ss_pred eeEEEcCCeEEEEEEec-----ccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcC
Q psy9150 6 DYEYVLGHKIVFICMAK-----GKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNM 80 (97)
Q Consensus 6 ~~~~~~g~~~~l~c~~~-----~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~ 80 (97)
+..+..|+.+.|.|.+. +.|.|.+.|++++..+....+..... ....|.|.+++.+|+|.|.|.+...
T Consensus 138 ~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~~~-------~~~~L~I~~V~~~DsG~YtC~a~~~ 210 (227)
T PHA02826 138 NYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQLRN-------NNSTLVIKSATHDDSGIYTCNLRFN 210 (227)
T ss_pred cceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEEEeC-------CCCEEEECcCCHHhCEEEEEEEEEe
Confidence 45667899999999985 34578999999999987544333211 1347999999999999999999876
Q ss_pred C
Q psy9150 81 Y 81 (97)
Q Consensus 81 ~ 81 (97)
.
T Consensus 211 ~ 211 (227)
T PHA02826 211 K 211 (227)
T ss_pred E
Confidence 4
No 97
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.42 E-value=3.4e-12 Score=59.39 Aligned_cols=71 Identities=23% Similarity=0.281 Sum_probs=53.8
Q ss_pred eEEEcCCeEEEEEEec-ccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce-
Q psy9150 7 YEYVLGHKIVFICMAK-GKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD- 84 (97)
Q Consensus 7 ~~~~~g~~~~l~c~~~-~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~- 84 (97)
..+.+|+.+.|.|.+. +.+.+.+.|++++..+.... ....|.|..++.+|+|.|.|.+.+..+..
T Consensus 9 ~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~~-------------~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~ 75 (83)
T cd05753 9 RVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYSH-------------SNSNLSIPQATLSDSGSYHCSGIIGSYDYS 75 (83)
T ss_pred ceecCCCCEEEEeeCCCCCcceEEEEEECCeEccccC-------------CCceEEECccCHHHCEEEEEEEEeCCceec
Confidence 3678999999999985 45667799999987654211 13478999999999999999999988754
Q ss_pred eEEEEE
Q psy9150 85 TRTFKT 90 (97)
Q Consensus 85 ~~~~~~ 90 (97)
+..+.|
T Consensus 76 s~~~~i 81 (83)
T cd05753 76 SEPVSI 81 (83)
T ss_pred CCCEEE
Confidence 334433
No 98
>KOG3513|consensus
Probab=99.41 E-value=3.8e-12 Score=79.93 Aligned_cols=79 Identities=24% Similarity=0.338 Sum_probs=63.4
Q ss_pred eeEEEcCCeEEEEEEecccCCCeeEEEeCCE-EccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGV-ELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD 84 (97)
Q Consensus 6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~ 84 (97)
+.....|+.+.|.|.+.|.|.|.+.|.|.+. ++...... ..+..+|.|.+++.+|.|.|.|.+.|..|..
T Consensus 250 ~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~~r~~~---------~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~ 320 (1051)
T KOG3513|consen 250 TETALKGQSVKLECFALGNPTPQIKWRKVDGKPPPRRATY---------SNYGKVLKIPNVQYEDAGEYECIAENSRGSA 320 (1051)
T ss_pred cccccCCCeEEEEEEecCCCCCcEEEEeCCCCCCCcceee---------eccccEEEecccCcCCCeEEEEEEecccccc
Confidence 5677889999999999999999999999665 44322211 1125689999999999999999999999988
Q ss_pred eEEEEEEEE
Q psy9150 85 TRTFKTDFS 93 (97)
Q Consensus 85 ~~~~~~~~~ 93 (97)
.+...+.+.
T Consensus 321 ~~~~~v~v~ 329 (1051)
T KOG3513|consen 321 THSGHVTVY 329 (1051)
T ss_pred eeeEEEEEe
Confidence 877776654
No 99
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.39 E-value=8.6e-12 Score=59.19 Aligned_cols=76 Identities=13% Similarity=0.062 Sum_probs=52.8
Q ss_pred eEEEcCCeEEEEEEecccCCCeeEEEeCCEEc-cc-c------------ceeeEEEEEecCceEEEEEEEccCCCCCCEE
Q psy9150 7 YEYVLGHKIVFICMAKGKPRPHITWFKDGVEL-YT-H------------MYVNLHEWHYGTDRIKSKIEIDPATQMDAGI 72 (97)
Q Consensus 7 ~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~-~~-~------------~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~ 72 (97)
+.+..|+++.|.|...+.+.+.+.|+++++.. .. . .++.... .........|.|.+++.+|+|.
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~--~~~~~g~~~L~I~~l~~sDsgt 79 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRR--NLWDQGSFPLIIKNLKIEDSDT 79 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceec--ccCCCCeEEEEECCCCHHHCEE
Confidence 45778999999999998899999999765322 11 0 1111110 0111224579999999999999
Q ss_pred EEEEEEcCCCce
Q psy9150 73 YECYADNMYNVD 84 (97)
Q Consensus 73 y~c~~~~~~g~~ 84 (97)
|.|.+.|..+..
T Consensus 80 Y~C~v~~~~~~~ 91 (94)
T cd07690 80 YICEVEDKKEEV 91 (94)
T ss_pred EEEEECCccceE
Confidence 999998876653
No 100
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.39 E-value=2.5e-11 Score=56.32 Aligned_cols=72 Identities=25% Similarity=0.390 Sum_probs=47.4
Q ss_pred EEEEEEecc-cCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeE
Q psy9150 15 IVFICMAKG-KPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTR 86 (97)
Q Consensus 15 ~~l~c~~~~-~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~ 86 (97)
+.|.|.+.| .|.+.+.|++++..+...................+.|.+......+.+.|.|.+.|.......
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~ 74 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGK 74 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCc
Confidence 578999976 688899999999887643211111000001122456778777777889999999988755433
No 101
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.39 E-value=2.2e-11 Score=57.03 Aligned_cols=81 Identities=20% Similarity=0.239 Sum_probs=54.4
Q ss_pred CCeEEEEEEecccC--CCeeEEEeCCEEccccceeeE-EEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEE
Q psy9150 12 GHKIVFICMAKGKP--RPHITWFKDGVELYTHMYVNL-HEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTF 88 (97)
Q Consensus 12 g~~~~l~c~~~~~~--~p~i~w~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~ 88 (97)
|+.+.|.|.+.+.+ ...+.|..++........... ...........++|.|..+...|.|.|.|.+.|..|......
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 67899999997755 446799887654321100000 000001122367899999999999999999999988887777
Q ss_pred EEEE
Q psy9150 89 KTDF 92 (97)
Q Consensus 89 ~~~~ 92 (97)
.|.|
T Consensus 81 ~~~V 84 (86)
T cd05862 81 IVIV 84 (86)
T ss_pred EEEE
Confidence 6665
No 102
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=99.37 E-value=4.1e-11 Score=55.81 Aligned_cols=82 Identities=13% Similarity=0.273 Sum_probs=59.5
Q ss_pred ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150 4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV 83 (97)
Q Consensus 4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~ 83 (97)
.....+..|+.+.|.|...+. .+.+.|+.++..+....+.... ...+.|..++.+|+|.|.|.+. +.|.
T Consensus 3 ~~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~---------~~GLlI~~~~~~dsG~Y~C~s~-E~gf 71 (85)
T cd05872 3 VKNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVG---------TDGLLILVTSPEHSGTYRCYSE-EEGF 71 (85)
T ss_pred ceEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEe---------CCCCEEEECCHhhCEEEEEEEe-cCCC
Confidence 457789999999999999764 6689999999987654333221 2347789999999999999876 4455
Q ss_pred eeEEEEEEEEEee
Q psy9150 84 DTRTFKTDFSITF 96 (97)
Q Consensus 84 ~~~~~~~~~~~~~ 96 (97)
...-....+.++.
T Consensus 72 ~~~~~~y~l~v~~ 84 (85)
T cd05872 72 QQLVASYSLNVVE 84 (85)
T ss_pred eEEEEEEEEEEeC
Confidence 5544445555543
No 103
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.36 E-value=1.1e-10 Score=55.59 Aligned_cols=74 Identities=20% Similarity=0.302 Sum_probs=52.1
Q ss_pred ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEc-c-------ccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEE
Q psy9150 4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVEL-Y-------THMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYEC 75 (97)
Q Consensus 4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c 75 (97)
..++.+.+|+.+.|.|.+.+.+.+.+.|++.+..+ . ...++... ........|.|..++.+|.|.|.|
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~----~~~~~~~~L~I~~v~~~DsG~Y~C 79 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLV----NFSANELSISISNVSLSDEGRYTC 79 (95)
T ss_pred CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEE----cCCCCeeEEEEccCCcccCEEEEE
Confidence 46788999999999999988888999998633211 1 01121111 111124579999999999999999
Q ss_pred EEEcCC
Q psy9150 76 YADNMY 81 (97)
Q Consensus 76 ~~~~~~ 81 (97)
.+....
T Consensus 80 ~~~~~~ 85 (95)
T cd05717 80 SLYTMP 85 (95)
T ss_pred EEecCC
Confidence 988654
No 104
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.34 E-value=1.3e-11 Score=58.50 Aligned_cols=74 Identities=16% Similarity=0.156 Sum_probs=55.7
Q ss_pred CceeeEEEcCCeEEEEEE-ecccCCCeeEEEeCCEEcc-ccceeeEEEEEecCceEEEEEEEccCCCCCCE-EEEEEEEc
Q psy9150 3 SHFDYEYVLGHKIVFICM-AKGKPRPHITWFKDGVELY-THMYVNLHEWHYGTDRIKSKIEIDPATQMDAG-IYECYADN 79 (97)
Q Consensus 3 ~~~~~~~~~g~~~~l~c~-~~~~~~p~i~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g-~y~c~~~~ 79 (97)
....+.+.+|+.+.|.|. ..|.|.|.+.|+.++.... ...+..+. ....|.|.++...|.| .|.|.+.|
T Consensus 9 ~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~--------~~GnL~fs~v~~~D~g~~Y~C~a~~ 80 (95)
T cd05845 9 KIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMG--------QNGNLYFANVEEQDSHPDYICHAHF 80 (95)
T ss_pred ccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEEC--------CCceEEEEEEehhhCCCCeEEEEEc
Confidence 346788999999999997 5999999999998654422 22222111 1358999999999999 79999998
Q ss_pred CCCce
Q psy9150 80 MYNVD 84 (97)
Q Consensus 80 ~~g~~ 84 (97)
.....
T Consensus 81 ~~~~~ 85 (95)
T cd05845 81 PGLRT 85 (95)
T ss_pred ccccc
Confidence 86543
No 105
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=99.33 E-value=6e-11 Score=54.60 Aligned_cols=67 Identities=21% Similarity=0.377 Sum_probs=49.3
Q ss_pred EEEEEEe-cccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150 15 IVFICMA-KGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD 84 (97)
Q Consensus 15 ~~l~c~~-~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~ 84 (97)
+.|.|.. .+.|++.+.||+++..+....... .........++|.+.....+|.+.|.|.+.|..+..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~---~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQ---ENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcccc---cCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 6789998 568999999999999986432110 000111235579999999999999999999998764
No 106
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.32 E-value=5.4e-11 Score=52.60 Aligned_cols=63 Identities=27% Similarity=0.508 Sum_probs=45.3
Q ss_pred CCeEEEEEEe-cccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEE
Q psy9150 12 GHKIVFICMA-KGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYA 77 (97)
Q Consensus 12 g~~~~l~c~~-~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~ 77 (97)
|+.+.|.|.+ .+.+.+.+.|++++............ .........|.|.++..+|.|.|.|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~---~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRS---TNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEE---ETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEee---cccceeeeEEEEccCCHHHCEEEEEEC
Confidence 6789999999 77788899999988766543322211 111212224999999999999999975
No 107
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.31 E-value=6.9e-11 Score=54.26 Aligned_cols=70 Identities=21% Similarity=0.490 Sum_probs=53.4
Q ss_pred eEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC-cee
Q psy9150 7 YEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN-VDT 85 (97)
Q Consensus 7 ~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g-~~~ 85 (97)
..+..|+.+.|.|.+.+.|.+.+.|++++..+.... ..+.+..+...+.|.|.|.+.+..+ ...
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~---------------~~~~~~~~~~~~~g~y~C~~~~~~~~~~s 73 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQ---------------NGLFIPNVSPEDSGNYTCRASNGSGSNTS 73 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEES---------------SEEEESSEEGGGTEEEEEEEEETTEEEEE
T ss_pred eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeee---------------eeeeeeeeccccCEEEEEEEEeCCCCeEe
Confidence 567899999999999998889999999887665211 1255677888999999999998665 344
Q ss_pred EEEEEE
Q psy9150 86 RTFKTD 91 (97)
Q Consensus 86 ~~~~~~ 91 (97)
..+.|+
T Consensus 74 ~~~~v~ 79 (80)
T PF13895_consen 74 TSVNVT 79 (80)
T ss_dssp EEEEEE
T ss_pred eeEEee
Confidence 555544
No 108
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=99.29 E-value=1.6e-10 Score=55.39 Aligned_cols=80 Identities=18% Similarity=0.299 Sum_probs=54.4
Q ss_pred eeeEEEcCCeEEEEEEec-----------ccCCCeeEEEeCCEEccccce-----eeEEEEEecCceEEEEEEEccCCCC
Q psy9150 5 FDYEYVLGHKIVFICMAK-----------GKPRPHITWFKDGVELYTHMY-----VNLHEWHYGTDRIKSKIEIDPATQM 68 (97)
Q Consensus 5 ~~~~~~~g~~~~l~c~~~-----------~~~~p~i~w~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~i~~~~~~ 68 (97)
..+.+.+|+.+.+.|... ......+.|++++..+..... .++. .....|.|.++..+
T Consensus 8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~-------~~~~~Lwf~Pa~~e 80 (104)
T cd05896 8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMS-------KEEDSIWFRPAELQ 80 (104)
T ss_pred eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEE-------EeCCEEEEEeCChh
Confidence 456788999999999961 112347999998754443221 1111 11457999999999
Q ss_pred CCEEEEEEEEcCCCceeEEEEEE
Q psy9150 69 DAGIYECYADNMYNVDTRTFKTD 91 (97)
Q Consensus 69 ~~g~y~c~~~~~~g~~~~~~~~~ 91 (97)
|+|.|.|.+.|...-....+.|.
T Consensus 81 DSG~Y~C~~rN~t~C~~~~i~l~ 103 (104)
T cd05896 81 DSGLYTCVLRNSTYCMKVSMSLT 103 (104)
T ss_pred hCeEEEEEECCCCcceEEEEEEE
Confidence 99999999998775545454443
No 109
>KOG4221|consensus
Probab=99.29 E-value=5.4e-11 Score=75.62 Aligned_cols=82 Identities=23% Similarity=0.410 Sum_probs=61.8
Q ss_pred ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150 4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV 83 (97)
Q Consensus 4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~ 83 (97)
+....+..|+.+.|.|.+.+.|.|.+.|.+++..+.-.. .++.. .....|.|..++..|+|.|+|.+.|....
T Consensus 244 p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds-~rivl------~g~~slliS~a~~~dSg~YtC~Atn~~D~ 316 (1381)
T KOG4221|consen 244 PSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDS-YRIVL------VGGSSLLISNATDDDSGKYTCRATNTNDS 316 (1381)
T ss_pred CCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecc-eEEEE------ecccceEEeccccccCceEEEEecCCCcc
Confidence 356678899999999999999999999999999887554 22211 01347999999999999999999995444
Q ss_pred eeEEEEEEE
Q psy9150 84 DTRTFKTDF 92 (97)
Q Consensus 84 ~~~~~~~~~ 92 (97)
......|.|
T Consensus 317 idasaev~V 325 (1381)
T KOG4221|consen 317 IDASAEVTV 325 (1381)
T ss_pred cccceEEEE
Confidence 444443343
No 110
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.28 E-value=3.1e-10 Score=64.83 Aligned_cols=81 Identities=17% Similarity=0.373 Sum_probs=56.9
Q ss_pred eeeEEEcCCeEEEEEEecccCCC---eeEEEeCCEEccccc-----eeeEEEEEec---CceEEEEEEEccCCCCCCEEE
Q psy9150 5 FDYEYVLGHKIVFICMAKGKPRP---HITWFKDGVELYTHM-----YVNLHEWHYG---TDRIKSKIEIDPATQMDAGIY 73 (97)
Q Consensus 5 ~~~~~~~g~~~~l~c~~~~~~~p---~i~w~~~~~~~~~~~-----~~~~~~~~~~---~~~~~~~l~i~~~~~~~~g~y 73 (97)
..+.+..|+.+.|.|.+.|.|.+ .+.|+++|..+.... +......... .......|.|.+++.+|.|.|
T Consensus 228 ~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y 307 (326)
T PHA02785 228 EGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTF 307 (326)
T ss_pred CcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeee
Confidence 34566779999999999988864 799999998875421 1111110000 111245799999999999999
Q ss_pred EEEEEcCCCcee
Q psy9150 74 ECYADNMYNVDT 85 (97)
Q Consensus 74 ~c~~~~~~g~~~ 85 (97)
.|.+.|..+...
T Consensus 308 ~C~A~n~~~~~~ 319 (326)
T PHA02785 308 TCMAFTIPSISK 319 (326)
T ss_pred EEEEEeccCceE
Confidence 999999886543
No 111
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=99.21 E-value=1.7e-09 Score=53.26 Aligned_cols=86 Identities=15% Similarity=0.252 Sum_probs=54.3
Q ss_pred ceeeEEEcCCeEEEEEEeccc----CCCeeEEEe---------------CCEEcccc-cee--eEEEEEecCceEEEEEE
Q psy9150 4 HFDYEYVLGHKIVFICMAKGK----PRPHITWFK---------------DGVELYTH-MYV--NLHEWHYGTDRIKSKIE 61 (97)
Q Consensus 4 ~~~~~~~~g~~~~l~c~~~~~----~~p~i~w~~---------------~~~~~~~~-~~~--~~~~~~~~~~~~~~~l~ 61 (97)
...+.+..|+.+.|.|..... ....+.|.. +|...... ..+ +.. +.........++.
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~-f~g~~~~~daSI~ 83 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIE-WVGNPSRKDGSIV 83 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceE-EeCCCCcCeeEEE
Confidence 456788999999999999553 235799932 22222100 100 111 1111223466899
Q ss_pred EccCCCCCCEEEEEEEEcCCCceeEEEEE
Q psy9150 62 IDPATQMDAGIYECYADNMYNVDTRTFKT 90 (97)
Q Consensus 62 i~~~~~~~~g~y~c~~~~~~g~~~~~~~~ 90 (97)
|.+++.+|.|.|.|.+.|+.+.......+
T Consensus 84 I~nv~~sD~G~Y~C~v~n~p~~~~~~~~~ 112 (116)
T cd05879 84 IHNLDYTDNGTFTCDVKNPPDIVGKSSQV 112 (116)
T ss_pred EccCCcccCEEEEEEEEcCCCcCCceeEE
Confidence 99999999999999999987755443433
No 112
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.20 E-value=6.5e-10 Score=52.84 Aligned_cols=72 Identities=15% Similarity=0.191 Sum_probs=51.8
Q ss_pred eeEEEcCCeEEEEEEe-c----ccCCCeeEEEeCCEEccccce-eeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEc
Q psy9150 6 DYEYVLGHKIVFICMA-K----GKPRPHITWFKDGVELYTHMY-VNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADN 79 (97)
Q Consensus 6 ~~~~~~g~~~~l~c~~-~----~~~~p~i~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~ 79 (97)
...+..|....+.|+- . ..+.|.+.||+++.++..... .... . ....|.|..+..+|.|.|+|.+.+
T Consensus 4 ~~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~----~---~~~~L~I~~v~~~D~G~YtC~~~~ 76 (95)
T cd05897 4 PQILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSL----K---GSTYLHIIDVSLNDSGYYTCKLQF 76 (95)
T ss_pred eeEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEec----C---CCCEEEEEEcChhhCEEEEEEEEE
Confidence 3456678889999984 2 336678999999988764321 1110 0 023699999999999999999999
Q ss_pred CCCce
Q psy9150 80 MYNVD 84 (97)
Q Consensus 80 ~~g~~ 84 (97)
..+..
T Consensus 77 ~~~g~ 81 (95)
T cd05897 77 THEGK 81 (95)
T ss_pred eeCCE
Confidence 87654
No 113
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.15 E-value=4.3e-10 Score=64.26 Aligned_cols=76 Identities=22% Similarity=0.329 Sum_probs=55.1
Q ss_pred EEEcCCeEEEEEEe-----cccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150 8 EYVLGHKIVFICMA-----KGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN 82 (97)
Q Consensus 8 ~~~~g~~~~l~c~~-----~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g 82 (97)
.+.+|+.+.+.|.+ .|.|.+.+.|++++..... .... .. ...|.+..+..+|+|.|+|.+.|..|
T Consensus 37 ~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~~--~~~~-----~~---g~~l~i~~~~~~DsG~Y~C~a~N~~g 106 (326)
T PHA02785 37 MELENEPVILPCPQINTLSSGYNILDILWEKRGADNDR--IIPI-----DN---GSNMLILNPTQSDSGIYICITKNETY 106 (326)
T ss_pred hhhcCCCEEEECCCccccccCCCCceEEEEECCCccce--EEEc-----cC---CceEEEcccCcccCeEEEEEEECCCc
Confidence 45678999999997 6888899999998743211 0000 01 22477888999999999999999988
Q ss_pred ceeEEEEEEEE
Q psy9150 83 VDTRTFKTDFS 93 (97)
Q Consensus 83 ~~~~~~~~~~~ 93 (97)
.....+.|.|.
T Consensus 107 ~~~~s~~L~V~ 117 (326)
T PHA02785 107 CDMMSLNLTIV 117 (326)
T ss_pred ceEEEEEEEEE
Confidence 76666665553
No 114
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=99.15 E-value=4.5e-09 Score=50.98 Aligned_cols=84 Identities=19% Similarity=0.261 Sum_probs=54.0
Q ss_pred cCCeEEEEEEecccC------CCeeEEEeCC-----E-Ecc--ccceeeE---EEEEe---cCceEEEEEEEccCCCCCC
Q psy9150 11 LGHKIVFICMAKGKP------RPHITWFKDG-----V-ELY--THMYVNL---HEWHY---GTDRIKSKIEIDPATQMDA 70 (97)
Q Consensus 11 ~g~~~~l~c~~~~~~------~p~i~w~~~~-----~-~~~--~~~~~~~---~~~~~---~~~~~~~~l~i~~~~~~~~ 70 (97)
.|+.+.|.|.....+ .+.+.|++.. . .+. ....... ...+. .......+|.|.+++.+|.
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 478899999986543 5679999852 1 111 1111000 00000 1122356899999999999
Q ss_pred EEEEEEEEcCCCceeEEEEEEEEE
Q psy9150 71 GIYECYADNMYNVDTRTFKTDFSI 94 (97)
Q Consensus 71 g~y~c~~~~~~g~~~~~~~~~~~~ 94 (97)
|.|.|.+.+..+.....+.|.|..
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEE
Confidence 999999998777777777777654
No 115
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=99.11 E-value=6.4e-09 Score=49.49 Aligned_cols=73 Identities=15% Similarity=0.188 Sum_probs=52.2
Q ss_pred CceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEcc--------ccceeeEEEEEecCceEEEEEEEccCCCCCCEEEE
Q psy9150 3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELY--------THMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYE 74 (97)
Q Consensus 3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~ 74 (97)
...++.+.+|+.+.|.|.+.+.....+.|++.+..+. ...++... .......+|.|..++.+|.|.|.
T Consensus 3 ~~~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~----~~~~~~~tL~I~~vq~~D~G~Y~ 78 (95)
T cd05881 3 VTEDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLV----NFSSNELRVSLSNVSLSDEGRYF 78 (95)
T ss_pred ccCceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEE----eCCCCEEEEEECcCCcccCEEEE
Confidence 3467889999999999999887777788987654321 12233222 11122457999999999999999
Q ss_pred EEEEc
Q psy9150 75 CYADN 79 (97)
Q Consensus 75 c~~~~ 79 (97)
|.+..
T Consensus 79 Cqv~t 83 (95)
T cd05881 79 CQLYT 83 (95)
T ss_pred EEEEc
Confidence 98864
No 116
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.10 E-value=1.7e-09 Score=58.98 Aligned_cols=88 Identities=17% Similarity=0.285 Sum_probs=57.9
Q ss_pred eeeEEEcCCeEEEEEEecccC-----------CCeeEEEeCCEEccc---cceeeEEEEEecC-ceEEEEEEEccCCCCC
Q psy9150 5 FDYEYVLGHKIVFICMAKGKP-----------RPHITWFKDGVELYT---HMYVNLHEWHYGT-DRIKSKIEIDPATQMD 69 (97)
Q Consensus 5 ~~~~~~~g~~~~l~c~~~~~~-----------~p~i~w~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~l~i~~~~~~~ 69 (97)
..+.+.+|+.+.|.|.+.+.+ .+.+.|++++....- ..+.......... ......|.|.+++.+|
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D 109 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID 109 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence 467889999999999986644 447999998654210 0000000000000 0113479999999999
Q ss_pred CEEEEEEEEcCCCceeEEEEEEE
Q psy9150 70 AGIYECYADNMYNVDTRTFKTDF 92 (97)
Q Consensus 70 ~g~y~c~~~~~~g~~~~~~~~~~ 92 (97)
+|.|.|.+.|..+.....+.|.+
T Consensus 110 sG~Y~C~a~N~~~~~~~~i~L~V 132 (227)
T PHA02826 110 EGIYICTISSGNICEESTIRLTF 132 (227)
T ss_pred CEEEEEEEEECCcceEEEEEEEE
Confidence 99999999998877666665554
No 117
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=99.09 E-value=5.1e-09 Score=50.93 Aligned_cols=77 Identities=16% Similarity=0.225 Sum_probs=53.3
Q ss_pred CCceeeEEEcCCeEEEEEEecccCCCeeEEEeCCE---Ec---c--------ccceeeEEEEEecCceEEEEEEEccCCC
Q psy9150 2 HSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGV---EL---Y--------THMYVNLHEWHYGTDRIKSKIEIDPATQ 67 (97)
Q Consensus 2 ~~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~---~~---~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 67 (97)
+++..+.+..|+.+.|.|.+.+.+.+.+.|++... +. . ...++.+. .........|.|.+++.
T Consensus 3 q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~---~~~~~~~~~L~I~~~~~ 79 (109)
T cd04983 3 QSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSAT---LDKSRKSSSLHISAAQL 79 (109)
T ss_pred ecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEE---EcccCCEEEEEECCCCH
Confidence 35667889999999999999877788899998321 10 0 01111111 01112356899999999
Q ss_pred CCCEEEEEEEEcCC
Q psy9150 68 MDAGIYECYADNMY 81 (97)
Q Consensus 68 ~~~g~y~c~~~~~~ 81 (97)
+|+|.|.|.+.+..
T Consensus 80 ~DsG~Y~C~~~~~~ 93 (109)
T cd04983 80 SDSAVYFCALSESG 93 (109)
T ss_pred HHCEEEEEEEecCC
Confidence 99999999988654
No 118
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=99.06 E-value=2.9e-08 Score=45.95 Aligned_cols=67 Identities=25% Similarity=0.304 Sum_probs=47.5
Q ss_pred EEEEEEecc-cCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150 15 IVFICMAKG-KPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV 83 (97)
Q Consensus 15 ~~l~c~~~~-~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~ 83 (97)
+.|.|.+.| .|.+.|.|++++..+...... ...........++|.+..-..+|...|.|.+.|+.-.
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~--~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~ 69 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTV--EETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVK 69 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccc--eeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccC
Confidence 578999854 688889999999888653211 1111122344678888888888889999999997654
No 119
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=99.05 E-value=2e-08 Score=48.68 Aligned_cols=84 Identities=14% Similarity=0.181 Sum_probs=53.0
Q ss_pred cCCeEEEEEEecccC------CCeeEEEeCCE----E---c-cccce------eeEEEEEecCceEEEEEEEccCCCCCC
Q psy9150 11 LGHKIVFICMAKGKP------RPHITWFKDGV----E---L-YTHMY------VNLHEWHYGTDRIKSKIEIDPATQMDA 70 (97)
Q Consensus 11 ~g~~~~l~c~~~~~~------~p~i~w~~~~~----~---~-~~~~~------~~~~~~~~~~~~~~~~l~i~~~~~~~~ 70 (97)
.|+.+.|.|.....| ...+.|++... . + ..... +..............+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 378899999986542 35699998431 0 0 00000 000000000111245799999999999
Q ss_pred EEEEEEEEcCCCceeEEEEEEEEE
Q psy9150 71 GIYECYADNMYNVDTRTFKTDFSI 94 (97)
Q Consensus 71 g~y~c~~~~~~g~~~~~~~~~~~~ 94 (97)
|.|.|.+.+..+.....+.|.|..
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEEE
Confidence 999999999888888888777654
No 120
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=99.02 E-value=1.7e-08 Score=46.79 Aligned_cols=69 Identities=22% Similarity=0.317 Sum_probs=44.6
Q ss_pred EEEEEEecc-cCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150 15 IVFICMAKG-KPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD 84 (97)
Q Consensus 15 ~~l~c~~~~-~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~ 84 (97)
+.|.|.+.+ .|.+.+.|++++..+.... ..............+.+.+......+.+.|.|.+.+.....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~ 71 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS 71 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence 578999966 4888999999998876332 11111000111224456666666666789999999887654
No 121
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=99.01 E-value=3e-08 Score=48.61 Aligned_cols=83 Identities=20% Similarity=0.267 Sum_probs=52.1
Q ss_pred cCCeEEEEEEecccC------------CCeeEEEeC--CEE---cc-ccceeeE---E--EEEec---CceEEEEEEEcc
Q psy9150 11 LGHKIVFICMAKGKP------------RPHITWFKD--GVE---LY-THMYVNL---H--EWHYG---TDRIKSKIEIDP 64 (97)
Q Consensus 11 ~g~~~~l~c~~~~~~------------~p~i~w~~~--~~~---~~-~~~~~~~---~--~~~~~---~~~~~~~l~i~~ 64 (97)
.|+++.|.|...... .+.+.|++. +.. +. ....... . ..... ......+|.|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 478999999986432 458999973 211 10 0000000 0 01111 122467899999
Q ss_pred CCCCCCEEEEEEEEcCCCceeEEEEEEEE
Q psy9150 65 ATQMDAGIYECYADNMYNVDTRTFKTDFS 93 (97)
Q Consensus 65 ~~~~~~g~y~c~~~~~~g~~~~~~~~~~~ 93 (97)
++.+|+|.|.|.+.+........+.|.+.
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEE
Confidence 99999999999999776767776666653
No 122
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.99 E-value=3.5e-08 Score=47.34 Aligned_cols=36 Identities=17% Similarity=0.330 Sum_probs=30.1
Q ss_pred EEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEE
Q psy9150 57 KSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDF 92 (97)
Q Consensus 57 ~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~ 92 (97)
..+|.|..++..|.|.|.|.+.+..+.....+.|.|
T Consensus 64 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 64 SVALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV 99 (100)
T ss_pred cEEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEEE
Confidence 457999999999999999999987777666666654
No 123
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.99 E-value=2.1e-08 Score=45.27 Aligned_cols=58 Identities=31% Similarity=0.676 Sum_probs=40.0
Q ss_pred eEEEEEEecccC-CCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEc
Q psy9150 14 KIVFICMAKGKP-RPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADN 79 (97)
Q Consensus 14 ~~~l~c~~~~~~-~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~ 79 (97)
.+.|.|.+.+.+ .+.+.|+ +...... ............|.+..+..+|.|.|.|.+.|
T Consensus 17 ~~~l~C~~~~~~~~~~~~W~-~~~~~~~-------~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 17 SVTLTCSAEGGPPPPSISWY-DSNPSFN-------SNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEEESSEESSEEEEEE-TEEEEEE-------EEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred eEEEEEEEccccCCeEEEEE-ecCCcee-------eeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 399999998877 7889999 1111100 00111222366899999999999999999875
No 124
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.97 E-value=9.8e-09 Score=48.73 Aligned_cols=74 Identities=24% Similarity=0.450 Sum_probs=49.1
Q ss_pred EcCCeEEEEEEeccc-C-CCeeEEEeCCEEccccce-eeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150 10 VLGHKIVFICMAKGK-P-RPHITWFKDGVELYTHMY-VNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV 83 (97)
Q Consensus 10 ~~g~~~~l~c~~~~~-~-~p~i~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~ 83 (97)
..|..+.|.|.+.|+ | ...+.|+++|..+..... ..............+.|.+......+.+.|.|.+.+....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 357889999999998 4 357999999988764432 1111111111223456777766667899999999987654
No 125
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.97 E-value=1.1e-07 Score=46.57 Aligned_cols=84 Identities=20% Similarity=0.317 Sum_probs=52.9
Q ss_pred cCCeEEEEEEecccC----------CCeeEEEeC--CEEcc----ccceeeE---EEEE--e---cCceEEEEEEEccCC
Q psy9150 11 LGHKIVFICMAKGKP----------RPHITWFKD--GVELY----THMYVNL---HEWH--Y---GTDRIKSKIEIDPAT 66 (97)
Q Consensus 11 ~g~~~~l~c~~~~~~----------~p~i~w~~~--~~~~~----~~~~~~~---~~~~--~---~~~~~~~~l~i~~~~ 66 (97)
+|+.+.|.|.....+ ...+.|++. ++... ....... ...+ . .......+|.|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 488999999986543 256999984 22111 0000000 0001 0 112235679999999
Q ss_pred CCCCEEEEEEEEcCCCceeEEEEEEEEE
Q psy9150 67 QMDAGIYECYADNMYNVDTRTFKTDFSI 94 (97)
Q Consensus 67 ~~~~g~y~c~~~~~~g~~~~~~~~~~~~ 94 (97)
.+|.|.|.|.+..........+.|.|..
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 9999999999988766677777776653
No 126
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.95 E-value=9.4e-09 Score=48.60 Aligned_cols=66 Identities=18% Similarity=0.286 Sum_probs=48.4
Q ss_pred eeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcC
Q psy9150 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNM 80 (97)
Q Consensus 6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~ 80 (97)
...+..|+++.|.|... .+...+.|+++|....... . ........|.+..++.+|.|.|+|...+.
T Consensus 10 ~~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~-~-------~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 10 SSVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKK-P-------PEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CCccCCCCcEEEEEecC-CCCCEEEEEECCCCccccc-c-------CCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 34577899999999874 5677789999886533211 0 11122457999999999999999999876
No 127
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.94 E-value=3.4e-08 Score=45.93 Aligned_cols=69 Identities=23% Similarity=0.298 Sum_probs=45.4
Q ss_pred EEEEEEeccc-CCCeeEEEeCCEEccccceeeEEEEEec-CceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150 15 IVFICMAKGK-PRPHITWFKDGVELYTHMYVNLHEWHYG-TDRIKSKIEIDPATQMDAGIYECYADNMYNVD 84 (97)
Q Consensus 15 ~~l~c~~~~~-~~p~i~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~ 84 (97)
+.|.|.+.+. |.+.|.|+++|..+..... ........ .....+.+.+.....++...|.|.+.+.....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~ 72 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD 72 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence 5789999764 8889999999988764321 11111111 11124566666666777899999999887543
No 128
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.94 E-value=1.1e-08 Score=49.68 Aligned_cols=78 Identities=15% Similarity=0.236 Sum_probs=49.2
Q ss_pred CceeeEEEcCCeEEEEEEecccC-CCeeEEEeC--CEE---cccc-ceee---EEEEEecCceEEEEEEEccCCCCCCEE
Q psy9150 3 SHFDYEYVLGHKIVFICMAKGKP-RPHITWFKD--GVE---LYTH-MYVN---LHEWHYGTDRIKSKIEIDPATQMDAGI 72 (97)
Q Consensus 3 ~~~~~~~~~g~~~~l~c~~~~~~-~p~i~w~~~--~~~---~~~~-~~~~---~~~~~~~~~~~~~~l~i~~~~~~~~g~ 72 (97)
.+..+.+.+|+.+.|.|.+.+.. ...+.|++. |.. +... .... ...+..........|.|.+++.+|+|.
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~ 85 (106)
T cd04980 6 SPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAV 85 (106)
T ss_pred CCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEE
Confidence 45567889999999999987654 567999973 221 1100 0000 000011111224579999999999999
Q ss_pred EEEEEEcC
Q psy9150 73 YECYADNM 80 (97)
Q Consensus 73 y~c~~~~~ 80 (97)
|.|.+.+.
T Consensus 86 Y~Ca~~~~ 93 (106)
T cd04980 86 YYCQQYGT 93 (106)
T ss_pred EEEEEeCC
Confidence 99998654
No 129
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.94 E-value=2e-08 Score=49.04 Aligned_cols=79 Identities=15% Similarity=0.232 Sum_probs=51.2
Q ss_pred CCceeeEEEcCCeEEEEEEecccCCCeeEEEeCC--EEccc----c-ceeeE------EEEEecC-ceEEEEEEEccCCC
Q psy9150 2 HSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDG--VELYT----H-MYVNL------HEWHYGT-DRIKSKIEIDPATQ 67 (97)
Q Consensus 2 ~~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~--~~~~~----~-~~~~~------~~~~~~~-~~~~~~l~i~~~~~ 67 (97)
+++..+.+.+|+.+.|.|...+ +.+.+.||+.. ..... . ..... ..+.... ......|.|..++.
T Consensus 3 Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~ 81 (110)
T cd05899 3 QSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEP 81 (110)
T ss_pred ECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCCh
Confidence 3556788999999999999987 77889999832 21110 0 00000 0000011 11245799999999
Q ss_pred CCCEEEEEEEEcCC
Q psy9150 68 MDAGIYECYADNMY 81 (97)
Q Consensus 68 ~~~g~y~c~~~~~~ 81 (97)
+|+|.|.|.+.+..
T Consensus 82 ~Dsg~Y~Ca~~~~~ 95 (110)
T cd05899 82 EDSAVYLCASSLGG 95 (110)
T ss_pred hhCEEEEEEeeCCC
Confidence 99999999987653
No 130
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.93 E-value=7.3e-08 Score=47.47 Aligned_cols=80 Identities=24% Similarity=0.302 Sum_probs=49.5
Q ss_pred ceeeEEEcCCeEEEEEEecccC----CCeeEEEeC----CEE--cc-c-c-------ceeeEE-EEEecCceEEEEEEEc
Q psy9150 4 HFDYEYVLGHKIVFICMAKGKP----RPHITWFKD----GVE--LY-T-H-------MYVNLH-EWHYGTDRIKSKIEID 63 (97)
Q Consensus 4 ~~~~~~~~g~~~~l~c~~~~~~----~p~i~w~~~----~~~--~~-~-~-------~~~~~~-~~~~~~~~~~~~l~i~ 63 (97)
+..+.+..|+.+.|.|.....+ ...+.|++. +.. +. . . ..+... .+.........+|.|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 4678899999999999985432 235999751 111 10 0 0 000000 0000111224579999
Q ss_pred cCCCCCCEEEEEEEEcCCCc
Q psy9150 64 PATQMDAGIYECYADNMYNV 83 (97)
Q Consensus 64 ~~~~~~~g~y~c~~~~~~g~ 83 (97)
.++.+|.|.|.|.+.|..+.
T Consensus 85 ~v~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 85 QLQPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred eCChhhCEEEEEEEEeCCCC
Confidence 99999999999999987664
No 131
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.92 E-value=6.8e-08 Score=46.10 Aligned_cols=78 Identities=13% Similarity=0.130 Sum_probs=47.8
Q ss_pred CeEEEEEEecccC---CCeeEEEeCCEE----cc---cc------c--eeeEEEEEecCceEEEEEEEccCCCCCCEEEE
Q psy9150 13 HKIVFICMAKGKP---RPHITWFKDGVE----LY---TH------M--YVNLHEWHYGTDRIKSKIEIDPATQMDAGIYE 74 (97)
Q Consensus 13 ~~~~l~c~~~~~~---~p~i~w~~~~~~----~~---~~------~--~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~ 74 (97)
+.+.|.|.....+ ...+.|++.... +. .. . ..+.. .........+|.|.+++.+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~--~~~~~~~~~sL~I~~v~~~D~G~Y~ 78 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVS--FLNSSLEDATISISNLRLEDEGNYI 78 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEE--EeCCCCCceEEEEccCCcccCEEEE
Confidence 3578999986543 446999984321 10 00 0 00110 0011113568999999999999999
Q ss_pred EEEEc-CCCceeEEEEEEE
Q psy9150 75 CYADN-MYNVDTRTFKTDF 92 (97)
Q Consensus 75 c~~~~-~~g~~~~~~~~~~ 92 (97)
|.+.. +.|.....+.|.|
T Consensus 79 C~v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 79 CEFATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEEEeCCCCcEEEEEEEEe
Confidence 99875 5677777776654
No 132
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.91 E-value=5.1e-08 Score=45.35 Aligned_cols=69 Identities=22% Similarity=0.361 Sum_probs=44.1
Q ss_pred EEEEEEecc-cCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150 15 IVFICMAKG-KPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV 83 (97)
Q Consensus 15 ~~l~c~~~~-~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~ 83 (97)
+.|.|.+.| +|...+.|+++|..+...................+.+.+..-...+...|.|.+.+....
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 578999976 567779999999987543221111100011123456777666666778999999987654
No 133
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.90 E-value=1.9e-07 Score=45.68 Aligned_cols=38 Identities=16% Similarity=0.240 Sum_probs=30.7
Q ss_pred EEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEEE
Q psy9150 56 IKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFS 93 (97)
Q Consensus 56 ~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~~ 93 (97)
...+|.|.+++.+|.|.|.|.+..........+.|.|.
T Consensus 70 ~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 70 YNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred ceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEE
Confidence 46789999999999999999999866556666666654
No 134
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.88 E-value=1.8e-07 Score=46.11 Aligned_cols=80 Identities=19% Similarity=0.264 Sum_probs=48.9
Q ss_pred ceeeEEEcCCeEEEEEEecccC----CCeeEEEeCCE------Ecc-c---------cceeeE-EEEEecCceEEEEEEE
Q psy9150 4 HFDYEYVLGHKIVFICMAKGKP----RPHITWFKDGV------ELY-T---------HMYVNL-HEWHYGTDRIKSKIEI 62 (97)
Q Consensus 4 ~~~~~~~~g~~~~l~c~~~~~~----~p~i~w~~~~~------~~~-~---------~~~~~~-~~~~~~~~~~~~~l~i 62 (97)
+..+.+..|+.+.|.|...... ...+.|++... .+. . ..++.. ............+|.|
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 4567788999999999885432 24599986211 110 0 000000 0000011112467999
Q ss_pred ccCCCCCCEEEEEEEEcCCCc
Q psy9150 63 DPATQMDAGIYECYADNMYNV 83 (97)
Q Consensus 63 ~~~~~~~~g~y~c~~~~~~g~ 83 (97)
..++.+|.|.|.|.+.+....
T Consensus 85 ~~v~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 85 HNLQFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred eeCCcccCEEEEEEEEeCCCC
Confidence 999999999999999987654
No 135
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.88 E-value=4.1e-08 Score=47.35 Aligned_cols=73 Identities=14% Similarity=0.246 Sum_probs=48.6
Q ss_pred eEEEcCCeEEEEEEeccc-CCCeeEEEeCCE--E---cc------------ccceeeEEEEEecCceEEEEEEEccCCCC
Q psy9150 7 YEYVLGHKIVFICMAKGK-PRPHITWFKDGV--E---LY------------THMYVNLHEWHYGTDRIKSKIEIDPATQM 68 (97)
Q Consensus 7 ~~~~~g~~~~l~c~~~~~-~~p~i~w~~~~~--~---~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 68 (97)
+.+.+|+.+.|.|.+... +...+.|++... . +. ...+..+.. .......+|.|.+++.+
T Consensus 1 ~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~sL~I~~v~~~ 77 (105)
T cd00099 1 LSVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTR---DSSKSSFTLTISSLQPE 77 (105)
T ss_pred CeecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEE---eccCCEEEEEECCCCHH
Confidence 357789999999999775 667799998322 1 10 001111110 11113457999999999
Q ss_pred CCEEEEEEEEcCCC
Q psy9150 69 DAGIYECYADNMYN 82 (97)
Q Consensus 69 ~~g~y~c~~~~~~g 82 (97)
|.|.|.|.+.+..+
T Consensus 78 D~G~Y~C~v~~~~~ 91 (105)
T cd00099 78 DSAVYYCAVSLSGG 91 (105)
T ss_pred HCEEEEEEEecCCC
Confidence 99999999987664
No 136
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.86 E-value=1.4e-07 Score=43.88 Aligned_cols=77 Identities=14% Similarity=0.295 Sum_probs=51.6
Q ss_pred eeEEEcCCeEEEEEEecccCCC--eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150 6 DYEYVLGHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV 83 (97)
Q Consensus 6 ~~~~~~g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~ 83 (97)
.-.+..|+.+.|.|.....+.| .+.|...+........ ....+|.+..+...|+|.|.|.+... .
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~~-----------~~~ktL~~~qv~~qdSG~WtC~V~~~--~ 74 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQILN-----------QDKKTLNLVQLGPNDSGTWDCIVSVN--S 74 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccceecc-----------CCccEEEeceeCcccCCEEEEEEEEC--c
Confidence 3457789999999999554444 8999875544221100 11347888999999999999999754 3
Q ss_pred eeEEEEEEEEEe
Q psy9150 84 DTRTFKTDFSIT 95 (97)
Q Consensus 84 ~~~~~~~~~~~~ 95 (97)
....+.+.|.++
T Consensus 75 k~~~~~~~V~Vl 86 (88)
T cd07694 75 SEKTLKLDIKVL 86 (88)
T ss_pred eEEEEEeeEEEE
Confidence 333455555554
No 137
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.85 E-value=5.2e-08 Score=46.59 Aligned_cols=83 Identities=16% Similarity=0.152 Sum_probs=52.1
Q ss_pred EcCCeEEEEEEecc-cCCCeeEEEeCCEEccccce----ee--E----EEEEecCceEEEEEEEccCCCCCCEEEEEEEE
Q psy9150 10 VLGHKIVFICMAKG-KPRPHITWFKDGVELYTHMY----VN--L----HEWHYGTDRIKSKIEIDPATQMDAGIYECYAD 78 (97)
Q Consensus 10 ~~g~~~~l~c~~~~-~~~p~i~w~~~~~~~~~~~~----~~--~----~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~ 78 (97)
..|+++.|.|.... .....+.|++....+..... .. . ...+..-.....+|.|.+++.+|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 36899999998754 44567999986432221100 00 0 00111111224679999999999999999998
Q ss_pred cCCCce-eEEEEEEE
Q psy9150 79 NMYNVD-TRTFKTDF 92 (97)
Q Consensus 79 ~~~g~~-~~~~~~~~ 92 (97)
...|.. ...+.|.|
T Consensus 82 ~~~~~~~~~~f~L~v 96 (97)
T cd05775 82 TKNGVTITKEFTLHI 96 (97)
T ss_pred cCCCCeEEEEEEEEe
Confidence 877654 55666654
No 138
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.85 E-value=5.3e-08 Score=45.93 Aligned_cols=78 Identities=15% Similarity=0.156 Sum_probs=48.2
Q ss_pred CCeEEEEEEecccCCCeeEEEeCCEEccccc-------eeeEE----EEEecCceEEEEEEEccCCCCCCEEEEEEEEcC
Q psy9150 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHM-------YVNLH----EWHYGTDRIKSKIEIDPATQMDAGIYECYADNM 80 (97)
Q Consensus 12 g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~-------~~~~~----~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~ 80 (97)
|+.+.|.|.........+.|++......... ..... ..+... ....+|.|.+++.+|+|.|.|.+...
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~-~~~~sL~I~~l~~~DsG~Y~c~v~~~ 79 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETI-YPNGSLLIQNLTKEDSGTYTLQIIST 79 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEE-cCCceEEEccCCchhcEEEEEEEEcC
Confidence 6789999998776667899998543221100 00000 000000 01357999999999999999999887
Q ss_pred CCc-eeEEEEE
Q psy9150 81 YNV-DTRTFKT 90 (97)
Q Consensus 81 ~g~-~~~~~~~ 90 (97)
.+. ....+.|
T Consensus 80 ~~~~~~~~~~l 90 (92)
T cd05741 80 NGVTENAKFFL 90 (92)
T ss_pred CCcEEEEEEEE
Confidence 643 3445544
No 139
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.82 E-value=1.3e-07 Score=46.58 Aligned_cols=75 Identities=15% Similarity=0.299 Sum_probs=50.0
Q ss_pred CCceeeEEEcCCeEEEEEEecc--cCCCeeEEEeC--CEEcc------c-----------cceeeEEEEEecCceEEEEE
Q psy9150 2 HSHFDYEYVLGHKIVFICMAKG--KPRPHITWFKD--GVELY------T-----------HMYVNLHEWHYGTDRIKSKI 60 (97)
Q Consensus 2 ~~~~~~~~~~g~~~~l~c~~~~--~~~p~i~w~~~--~~~~~------~-----------~~~~~~~~~~~~~~~~~~~l 60 (97)
+.+..+.+.+|+.+.|.|...+ .+.+.+.|++. +.... . ..++.+. . ........|
T Consensus 3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~--~-~~~~~~~~L 79 (116)
T cd04982 3 QPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEAR--K-DVGKSTSTL 79 (116)
T ss_pred CcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEE--E-ECCCCEEEE
Confidence 3566778899999999999876 57788999983 22110 0 0111110 0 010124579
Q ss_pred EEccCCCCCCEEEEEEEEc
Q psy9150 61 EIDPATQMDAGIYECYADN 79 (97)
Q Consensus 61 ~i~~~~~~~~g~y~c~~~~ 79 (97)
.|.+++.+|+|.|.|.+..
T Consensus 80 ~I~~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 80 TIQNLEKEDSATYYCAYWE 98 (116)
T ss_pred EEEECCHHHCEEEEEEEec
Confidence 9999999999999998864
No 140
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.80 E-value=3.4e-07 Score=44.01 Aligned_cols=37 Identities=16% Similarity=0.163 Sum_probs=28.7
Q ss_pred EEEEEEEccCCCCCCEEEEEEEEc-CCCceeEEEEEEE
Q psy9150 56 IKSKIEIDPATQMDAGIYECYADN-MYNVDTRTFKTDF 92 (97)
Q Consensus 56 ~~~~l~i~~~~~~~~g~y~c~~~~-~~g~~~~~~~~~~ 92 (97)
...+|.|.+++.+|.|.|.|.+.+ +.|.....+.|.|
T Consensus 62 ~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 62 ADGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV 99 (100)
T ss_pred CceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence 356799999999999999999987 5666555555443
No 141
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.79 E-value=1e-07 Score=45.59 Aligned_cols=73 Identities=12% Similarity=0.195 Sum_probs=45.4
Q ss_pred EEEcCCeEEEEEEeccc--CCCeeEEEeC--CEEccc----c-ce--eeEEEEEecCceEEEEEEEccCCCCCCEEEEEE
Q psy9150 8 EYVLGHKIVFICMAKGK--PRPHITWFKD--GVELYT----H-MY--VNLHEWHYGTDRIKSKIEIDPATQMDAGIYECY 76 (97)
Q Consensus 8 ~~~~g~~~~l~c~~~~~--~~p~i~w~~~--~~~~~~----~-~~--~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~ 76 (97)
.+.+|+++.|.|...+. ....+.||+. +..... . .. .....+..........|.|..++.+|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 46789999999998664 4567999972 221110 0 00 000001111222355799999999999999998
Q ss_pred EEcC
Q psy9150 77 ADNM 80 (97)
Q Consensus 77 ~~~~ 80 (97)
+.+.
T Consensus 82 ~~~~ 85 (98)
T cd04984 82 VWDS 85 (98)
T ss_pred EccC
Confidence 8753
No 142
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.77 E-value=1.9e-07 Score=45.28 Aligned_cols=85 Identities=14% Similarity=0.160 Sum_probs=49.7
Q ss_pred eeEEEcCCeEEEEEEecccCCCeeEEEeCCEE-----ccc---cceeeEEEEEecCc---eEEEEEEEccCCCCCCEEEE
Q psy9150 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVE-----LYT---HMYVNLHEWHYGTD---RIKSKIEIDPATQMDAGIYE 74 (97)
Q Consensus 6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~-----~~~---~~~~~~~~~~~~~~---~~~~~l~i~~~~~~~~g~y~ 74 (97)
...+.+|+.+.|.|.........+.|++.... +.. .............. ..+.+|.|.+++..|.|.|.
T Consensus 7 p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~ 86 (105)
T cd05774 7 PPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYT 86 (105)
T ss_pred CCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEE
Confidence 44577899999998765444447999995221 110 00000000000000 01348999999999999999
Q ss_pred EEEEcCCC-ceeEEEEE
Q psy9150 75 CYADNMYN-VDTRTFKT 90 (97)
Q Consensus 75 c~~~~~~g-~~~~~~~~ 90 (97)
|.+.+... .......+
T Consensus 87 ~~v~~~~~~~~~~~v~l 103 (105)
T cd05774 87 LQTITTNFQVEQATVHL 103 (105)
T ss_pred EEEEeCCccEEEEEEEE
Confidence 99988764 33444433
No 143
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.76 E-value=5.3e-07 Score=43.07 Aligned_cols=81 Identities=16% Similarity=0.103 Sum_probs=48.6
Q ss_pred CCeEEEEEEecccCC-CeeEEEeCCE----Ecc---c-c-----ceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEE
Q psy9150 12 GHKIVFICMAKGKPR-PHITWFKDGV----ELY---T-H-----MYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYA 77 (97)
Q Consensus 12 g~~~~l~c~~~~~~~-p~i~w~~~~~----~~~---~-~-----~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~ 77 (97)
|+.+.|.|....... -.+.|++... .+. . . ..+..............+|.|.+++.+|.|.|.|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 678999998754332 3599987321 110 0 0 001000001112223567999999999999999997
Q ss_pred E-cCCCceeEEEEEEE
Q psy9150 78 D-NMYNVDTRTFKTDF 92 (97)
Q Consensus 78 ~-~~~g~~~~~~~~~~ 92 (97)
. .+.|.....+.|.|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 7 45677777766654
No 144
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.75 E-value=1.5e-06 Score=42.85 Aligned_cols=37 Identities=24% Similarity=0.325 Sum_probs=32.2
Q ss_pred EEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEEE
Q psy9150 57 KSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFS 93 (97)
Q Consensus 57 ~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~~ 93 (97)
..+|.|.+++..|.|.|.|.+..........+.|.+.
T Consensus 78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 78 DASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred ceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 5789999999999999999999888777777777765
No 145
>KOG4194|consensus
Probab=98.75 E-value=6e-08 Score=59.14 Aligned_cols=83 Identities=23% Similarity=0.402 Sum_probs=62.3
Q ss_pred CceeeEEEcCCeEEEEEEecccCC-CeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150 3 SHFDYEYVLGHKIVFICMAKGKPR-PHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY 81 (97)
Q Consensus 3 ~~~~~~~~~g~~~~l~c~~~~~~~-p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~ 81 (97)
|.++..+..|+.+.+.|.+.+.|+ |.+.|+++.+++....+... .. ....+.+.....+|.|.|+|.+.+..
T Consensus 712 PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f-----~d--~dQllvv~~~~~~daG~yTcem~~~~ 784 (873)
T KOG4194|consen 712 PLEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITERHTF-----PD--GDQLLVVKENLVEDAGIYTCEMSNTL 784 (873)
T ss_pred cccceEEEecceEEEEEecCCCCCCccccccCCCCceEEeecccC-----CC--CCeEEEEEehhhhhcceEEEEEEeec
Confidence 446778899999999999999887 99999998877654332211 11 13467777888999999999999998
Q ss_pred CceeEEEEEEE
Q psy9150 82 NVDTRTFKTDF 92 (97)
Q Consensus 82 g~~~~~~~~~~ 92 (97)
|.....+.+.+
T Consensus 785 ~~~~~~i~l~~ 795 (873)
T KOG4194|consen 785 GTERIHICLLV 795 (873)
T ss_pred cceeeEEEEEE
Confidence 88766554443
No 146
>KOG4221|consensus
Probab=98.75 E-value=1.5e-07 Score=60.80 Aligned_cols=72 Identities=22% Similarity=0.389 Sum_probs=59.1
Q ss_pred eeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150 5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD 84 (97)
Q Consensus 5 ~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~ 84 (97)
.+..+..|+.+.|.|.+.+.+.|.+.|.++..++....++..-. +..|.|..+...|.|.|.|.+.+..-+.
T Consensus 148 ~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~lp--------sG~L~I~~~qp~d~g~yrc~vt~g~~~r 219 (1381)
T KOG4221|consen 148 ESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIVLP--------SGALEISGLQPSDTGEYRCVVTGGASQR 219 (1381)
T ss_pred cceeEecCCcEEEEEEEcCccCceeEEecccccccCCCcEEEcC--------CCcEEecccccCCCceEEEEEecCCcCC
Confidence 46678899999999999999999999999988777655433211 4589999999999999999999876554
No 147
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.74 E-value=3.3e-07 Score=44.53 Aligned_cols=78 Identities=12% Similarity=0.186 Sum_probs=50.0
Q ss_pred CceeeEEEcCCeEEEEEEec-ccCCCeeEEEeCCE-----Ecc--ccceeeEE-EE--------EecCceEEEEEEEccC
Q psy9150 3 SHFDYEYVLGHKIVFICMAK-GKPRPHITWFKDGV-----ELY--THMYVNLH-EW--------HYGTDRIKSKIEIDPA 65 (97)
Q Consensus 3 ~~~~~~~~~g~~~~l~c~~~-~~~~p~i~w~~~~~-----~~~--~~~~~~~~-~~--------~~~~~~~~~~l~i~~~ 65 (97)
++..+.+.+|+.+.|.|... ......+.|++... .+. ........ .. .........+|.|.++
T Consensus 7 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l 86 (114)
T PF07686_consen 7 PPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNL 86 (114)
T ss_dssp EESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSE
T ss_pred eCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCC
Confidence 35678899999999999998 45566799998211 111 00000000 00 0011112457999999
Q ss_pred CCCCCEEEEEEEEcC
Q psy9150 66 TQMDAGIYECYADNM 80 (97)
Q Consensus 66 ~~~~~g~y~c~~~~~ 80 (97)
+..|+|.|.|.+...
T Consensus 87 ~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 87 QPSDSGTYFCQVSTS 101 (114)
T ss_dssp SGGGEEEEEEEEEES
T ss_pred CcCcCEEEEEEEEEC
Confidence 999999999998876
No 148
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=98.72 E-value=3.3e-07 Score=43.00 Aligned_cols=73 Identities=21% Similarity=0.399 Sum_probs=45.0
Q ss_pred CCeEEEEEEe-cccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150 12 GHKIVFICMA-KGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD 84 (97)
Q Consensus 12 g~~~~l~c~~-~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~ 84 (97)
|+.+.+.|.+ .++|.|.|.|+.++..+...................+.|.+..-...+...+.|.+.+.....
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~~ 87 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALSQ 87 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCCE
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccCC
Confidence 5689999976 678899999999887762111111110000111224567776655566788999999876544
No 149
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.72 E-value=4.2e-07 Score=43.23 Aligned_cols=67 Identities=18% Similarity=0.314 Sum_probs=45.9
Q ss_pred eeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEE
Q psy9150 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYAD 78 (97)
Q Consensus 6 ~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~ 78 (97)
...+..|++++|.|.... ..-.+.|++++....... .. ..........+.|..++..|+|.|.|...
T Consensus 9 ~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~---~~--~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 9 SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLH---LY--EKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCcee---cc--cccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 456778999999998754 455689999876532110 00 00112235578999999999999999865
No 150
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.71 E-value=1.1e-06 Score=38.48 Aligned_cols=65 Identities=34% Similarity=0.570 Sum_probs=44.3
Q ss_pred EEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150 16 VFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY 81 (97)
Q Consensus 16 ~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~ 81 (97)
.+.|.+.+.+...+.|++.+......... ..............+.+..+...|.|.|.|.+.+..
T Consensus 2 ~l~C~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 2 TLTCLASGPPPPTITWLKNGKPLPSSVLT-RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred EEEEEecCCCCCcEEEEECCEECCCcccE-EeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 57899988778889999987665433211 000011122335678999999999999999988765
No 151
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.70 E-value=8.6e-07 Score=46.72 Aligned_cols=88 Identities=14% Similarity=0.141 Sum_probs=56.2
Q ss_pred eeEEEcCCeEEEEEEec-ccCCCeeEEEeCCEEccc--cceeeEE-----EEE-ecCceEEEEEEEccCCCCCCEEEEEE
Q psy9150 6 DYEYVLGHKIVFICMAK-GKPRPHITWFKDGVELYT--HMYVNLH-----EWH-YGTDRIKSKIEIDPATQMDAGIYECY 76 (97)
Q Consensus 6 ~~~~~~g~~~~l~c~~~-~~~~p~i~w~~~~~~~~~--~~~~~~~-----~~~-~~~~~~~~~l~i~~~~~~~~g~y~c~ 76 (97)
.+.+.+|+.+.|.|... +...+.+.|++....+.. ....... ... .........+.|.+++.+|.|.|.|.
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~ 103 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI 103 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence 56789999999999984 666888999985332210 0000000 000 01112246799999999999999998
Q ss_pred EEc-CCC-ceeEEEEEEEE
Q psy9150 77 ADN-MYN-VDTRTFKTDFS 93 (97)
Q Consensus 77 ~~~-~~g-~~~~~~~~~~~ 93 (97)
+.- +.| ..+....|.++
T Consensus 104 F~tfp~G~~~~gt~CLtVt 122 (189)
T PHA02987 104 FNTLLSKNNEKGVVCLNVT 122 (189)
T ss_pred EEecCCCCCceeEEEEEEE
Confidence 764 455 55666666654
No 152
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.69 E-value=2.2e-06 Score=41.18 Aligned_cols=36 Identities=14% Similarity=0.222 Sum_probs=30.4
Q ss_pred EEEEEEccCCCCCCEEEEEEEEc-CCCceeEEEEEEE
Q psy9150 57 KSKIEIDPATQMDAGIYECYADN-MYNVDTRTFKTDF 92 (97)
Q Consensus 57 ~~~l~i~~~~~~~~g~y~c~~~~-~~g~~~~~~~~~~ 92 (97)
..+|.|.+++..|.|.|.|.+.+ +.|+.+..+.|.|
T Consensus 62 daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 62 DGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred cceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 46899999999999999999998 6777777766654
No 153
>KOG4222|consensus
Probab=98.63 E-value=1.7e-07 Score=60.19 Aligned_cols=73 Identities=29% Similarity=0.524 Sum_probs=57.9
Q ss_pred eeeEEEcCCeEEEEEEe-cccCCCeeEEEeCCEEccccc--eeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150 5 FDYEYVLGHKIVFICMA-KGKPRPHITWFKDGVELYTHM--YVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY 81 (97)
Q Consensus 5 ~~~~~~~g~~~~l~c~~-~~~~~p~i~w~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~ 81 (97)
.++.+..|+.+.+.|.. .+.|.|.+.|.++|..+.... ..... ....|.|.+++..|.|+|.|++.|..
T Consensus 139 rd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~li--------sgG~LlIsnvrksD~GtY~CVatNmv 210 (1281)
T KOG4222|consen 139 RDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALI--------SGGNLLISNVRKSDEGTYACVATNMV 210 (1281)
T ss_pred ccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEe--------cCCcEEEeccccCCCceeeeeecccc
Confidence 45777889999999997 788999999999999887221 11111 13479999999999999999999999
Q ss_pred Ccee
Q psy9150 82 NVDT 85 (97)
Q Consensus 82 g~~~ 85 (97)
|.+.
T Consensus 211 G~Re 214 (1281)
T KOG4222|consen 211 GERE 214 (1281)
T ss_pred cccc
Confidence 9753
No 154
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.62 E-value=2.2e-06 Score=40.93 Aligned_cols=72 Identities=19% Similarity=0.183 Sum_probs=46.2
Q ss_pred eEEEcCCeEEEEEEecc-cCCCeeEEEeCCEE-----cc--------ccceeeEEEEEecCceEEEEEEEccCCCCCCEE
Q psy9150 7 YEYVLGHKIVFICMAKG-KPRPHITWFKDGVE-----LY--------THMYVNLHEWHYGTDRIKSKIEIDPATQMDAGI 72 (97)
Q Consensus 7 ~~~~~g~~~~l~c~~~~-~~~p~i~w~~~~~~-----~~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~ 72 (97)
+.+.+|+++.|.|.... .....+.|++.... +. ...+..+. .........|.|..++.+|+|.
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~---~~~~~~~~~L~I~~v~~~DsG~ 78 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLT---DDPDNGVFTVTLNQLRKEDAGW 78 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEE---ecCCCCEEEEEEcCCCHHHCEE
Confidence 46788999999999864 34567899984311 10 00111111 0111234579999999999999
Q ss_pred EEEEEEcCC
Q psy9150 73 YECYADNMY 81 (97)
Q Consensus 73 y~c~~~~~~ 81 (97)
|.|.+....
T Consensus 79 Y~C~~~~~~ 87 (98)
T cd05716 79 YWCGVGDDG 87 (98)
T ss_pred EEEEcccCC
Confidence 999876543
No 155
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=98.61 E-value=1.8e-06 Score=39.35 Aligned_cols=67 Identities=19% Similarity=0.389 Sum_probs=41.1
Q ss_pred EEEEEEecccCCC--eeEEEeCCEEcccccee-eEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150 15 IVFICMAKGKPRP--HITWFKDGVELYTHMYV-NLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY 81 (97)
Q Consensus 15 ~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~ 81 (97)
+.|.|.+.|+.++ .+.|+++|..+...... .............+.|.+......+...|.|.+....
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 5789999987444 68999999874332111 1111111122235567776666677789999987654
No 156
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.59 E-value=3.2e-06 Score=41.43 Aligned_cols=73 Identities=18% Similarity=0.274 Sum_probs=43.9
Q ss_pred EEcCCeEEEEEEecccCCC--eeEEEeCCEEccccceeeEEEEEec-CceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150 9 YVLGHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHYG-TDRIKSKIEIDPATQMDAGIYECYADNMYN 82 (97)
Q Consensus 9 ~~~g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g 82 (97)
...|+.+.|.|.+.++.++ .+.|++||..+..... ........ .....+.|.+.....+....|.|.+.+...
T Consensus 18 ~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~-~~~p~~d~~ty~~~S~L~~~~~~~d~~~~ytC~V~H~~l 93 (111)
T cd05772 18 ANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQP-NITPEGDSVSYNVTSTVQVKLTEDDVHSQVTCEVQHRTL 93 (111)
T ss_pred cCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccccc-ceeeCCCCCcEEEEEEEEEECccccccCceEEEEEeCCC
Confidence 3467778999999887654 6899999998754221 11111100 112244566665433333469999988653
No 157
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.55 E-value=2.9e-06 Score=40.79 Aligned_cols=74 Identities=12% Similarity=0.211 Sum_probs=49.0
Q ss_pred EEEcCCeEEEEEEecc-cCCCe--eEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150 8 EYVLGHKIVFICMAKG-KPRPH--ITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD 84 (97)
Q Consensus 8 ~~~~g~~~~l~c~~~~-~~~p~--i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~ 84 (97)
.+.+|+.+.+.|.+.+ .|.+. |.||+++..+....... ..........++.+...+.++...|.|.+.+.....
T Consensus 12 ~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~---~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~~ 88 (100)
T cd05755 12 WQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGD---NTKSPVNAPATITITVDREDHGANFSCETELDLRPE 88 (100)
T ss_pred cccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceecc---ccCCCceeEEEEEEecchhhCCcEEEEEEEeccCcc
Confidence 3578999999999965 56666 69999998886432111 000112234567776666666678999999876653
No 158
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=98.54 E-value=5.8e-06 Score=39.42 Aligned_cols=77 Identities=16% Similarity=0.236 Sum_probs=46.7
Q ss_pred CeEEEEEEe-cccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEE
Q psy9150 13 HKIVFICMA-KGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTD 91 (97)
Q Consensus 13 ~~~~l~c~~-~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~ 91 (97)
....+.|.+ .+.|.+.|.|+++.... ................+.|.+.....++...+.|.+.+........+.+.
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~---~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~~ 92 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGN---ANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPVT 92 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCC---eeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEE
Confidence 456778987 57899999999872111 11111000001112355677766666778889999999876655555544
Q ss_pred E
Q psy9150 92 F 92 (97)
Q Consensus 92 ~ 92 (97)
+
T Consensus 93 l 93 (95)
T cd07703 93 L 93 (95)
T ss_pred E
Confidence 4
No 159
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.53 E-value=9.6e-06 Score=40.19 Aligned_cols=77 Identities=13% Similarity=0.108 Sum_probs=47.9
Q ss_pred CceeeEEEcCCeEEEEEEecccC------CCeeEEEeCC--E---E-cc--ccc-----eeeEEEEEe--cCceEEEEEE
Q psy9150 3 SHFDYEYVLGHKIVFICMAKGKP------RPHITWFKDG--V---E-LY--THM-----YVNLHEWHY--GTDRIKSKIE 61 (97)
Q Consensus 3 ~~~~~~~~~g~~~~l~c~~~~~~------~p~i~w~~~~--~---~-~~--~~~-----~~~~~~~~~--~~~~~~~~l~ 61 (97)
.+..+.+..|+.+.|.|...... ...+.|++.. . . .. ... .+.. .... .......+|.
T Consensus 5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~g-R~~~~~~~~~~~~sL~ 83 (119)
T cd05712 5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRG-RFRLLGDLGKKNCSLL 83 (119)
T ss_pred CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccc-cEEEecCCCCCEEEEE
Confidence 45678899999999999874221 2458999832 1 1 10 000 0000 0011 1223356899
Q ss_pred EccCCCCCCEEEEEEEEcC
Q psy9150 62 IDPATQMDAGIYECYADNM 80 (97)
Q Consensus 62 i~~~~~~~~g~y~c~~~~~ 80 (97)
|.+++.+|+|.|.|.+...
T Consensus 84 I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 84 ISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred EccCChhhCeEEEEEEEcC
Confidence 9999999999999988654
No 160
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.53 E-value=3.2e-06 Score=41.09 Aligned_cols=72 Identities=17% Similarity=0.347 Sum_probs=43.4
Q ss_pred EEEcCCeEEEEEEeccc-CCCeeEEEe--CC---EEcc-----ccceeeE-------EEEEe--cCceEEEEEEEccCCC
Q psy9150 8 EYVLGHKIVFICMAKGK-PRPHITWFK--DG---VELY-----THMYVNL-------HEWHY--GTDRIKSKIEIDPATQ 67 (97)
Q Consensus 8 ~~~~g~~~~l~c~~~~~-~~p~i~w~~--~~---~~~~-----~~~~~~~-------~~~~~--~~~~~~~~l~i~~~~~ 67 (97)
.+.+|+.+.|.|...+. ....+.||+ .| +.+. ....... ..+.. ........|.|..++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 46789999999998653 345799998 22 1100 0000000 00000 1112244699999999
Q ss_pred CCCEEEEEEEEc
Q psy9150 68 MDAGIYECYADN 79 (97)
Q Consensus 68 ~~~g~y~c~~~~ 79 (97)
+|+|.|.|...+
T Consensus 82 ~Dsg~YyCa~~~ 93 (107)
T cd07700 82 EDSGTYFCMTVG 93 (107)
T ss_pred HHCEEEEEeEcC
Confidence 999999998753
No 161
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.53 E-value=7.1e-06 Score=39.20 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=30.7
Q ss_pred EEEEEEccCCCCCCEEEEEEEE-cCCCceeEEEEEEE
Q psy9150 57 KSKIEIDPATQMDAGIYECYAD-NMYNVDTRTFKTDF 92 (97)
Q Consensus 57 ~~~l~i~~~~~~~~g~y~c~~~-~~~g~~~~~~~~~~ 92 (97)
..+|.|.+++..|.|.|.|.+. .+.|+.+....|.+
T Consensus 59 d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 59 DATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTV 95 (96)
T ss_pred ccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEE
Confidence 5689999999999999999975 56788888887765
No 162
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=98.52 E-value=1.2e-06 Score=41.71 Aligned_cols=75 Identities=13% Similarity=0.189 Sum_probs=44.0
Q ss_pred cCCeEEEEEEecccCCC--eeEEEeCCEEcccccee-eEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCcee
Q psy9150 11 LGHKIVFICMAKGKPRP--HITWFKDGVELYTHMYV-NLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT 85 (97)
Q Consensus 11 ~g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~ 85 (97)
....+.|.|.+.|+.++ .+.|.++|..+...... .............+.|.+......+...|.|.+........
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~~~ 90 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTTFE 90 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCeeee
Confidence 44568999999997665 47899999876322111 11000001112244555554444456789999988765543
No 163
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.50 E-value=2.3e-06 Score=42.16 Aligned_cols=75 Identities=15% Similarity=0.263 Sum_probs=48.7
Q ss_pred CceeeEEEcCCeEEEEEEeccc-CCCeeEEEeC--CEEcc---c---------cceeeEEEEEecCceEEEEEEEccCCC
Q psy9150 3 SHFDYEYVLGHKIVFICMAKGK-PRPHITWFKD--GVELY---T---------HMYVNLHEWHYGTDRIKSKIEIDPATQ 67 (97)
Q Consensus 3 ~~~~~~~~~g~~~~l~c~~~~~-~~p~i~w~~~--~~~~~---~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~ 67 (97)
++..+.+..|+.+.|.|..... ....+.|++. +.... . ..++.+. . .......+|.|..++.
T Consensus 5 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~--~-~~~~~~~sL~I~~~~~ 81 (116)
T cd07706 5 AQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVN--F-QKAQKSISLTISALQL 81 (116)
T ss_pred eCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEE--E-eccCCEEEEEECCCCH
Confidence 4567889999999999998653 4566999982 22110 0 0111111 0 0111245799999999
Q ss_pred CCCEEEEEEEEcC
Q psy9150 68 MDAGIYECYADNM 80 (97)
Q Consensus 68 ~~~g~y~c~~~~~ 80 (97)
+|+|.|.|.+...
T Consensus 82 ~Dsg~Y~C~~~~~ 94 (116)
T cd07706 82 EDSAKYFCALSTL 94 (116)
T ss_pred HHCEEEEEEEECC
Confidence 9999999998753
No 164
>KOG4222|consensus
Probab=98.49 E-value=2.5e-07 Score=59.55 Aligned_cols=82 Identities=27% Similarity=0.449 Sum_probs=63.6
Q ss_pred CceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150 3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN 82 (97)
Q Consensus 3 ~~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g 82 (97)
..+++.+..|..+.+.|.+.|.|.|.+.|.+++..++...+..... ..++.|.++...|.|.|.|.+.|..|
T Consensus 231 rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ry~i~~d--------~qtl~i~r~tp~deg~y~C~a~n~vG 302 (1281)
T KOG4222|consen 231 RPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSRYSILDD--------TQTLRIDRVTPTDEGTYVCPAENLVG 302 (1281)
T ss_pred ccccceeecccccccccccCCCCCCceeeeccCCCCCccceeeeec--------cccccccccCCCcccceeeecccccc
Confidence 3457778888889999999999999999999777776543322210 35789999999999999999999999
Q ss_pred ceeEEEEEEE
Q psy9150 83 VDTRTFKTDF 92 (97)
Q Consensus 83 ~~~~~~~~~~ 92 (97)
.......+.|
T Consensus 303 ~l~asa~ltV 312 (1281)
T KOG4222|consen 303 GLEASATLTV 312 (1281)
T ss_pred ccccccceEE
Confidence 8665544444
No 165
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=98.46 E-value=1.1e-05 Score=38.47 Aligned_cols=75 Identities=19% Similarity=0.288 Sum_probs=44.5
Q ss_pred CeEEEEEEe-cccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEE
Q psy9150 13 HKIVFICMA-KGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKT 90 (97)
Q Consensus 13 ~~~~l~c~~-~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~ 90 (97)
......|.+ .|+|.+.|.|+++.. ..................+.|.+.....++...|.|.+.+........+.+
T Consensus 16 ~~~va~C~s~~gkP~a~ItW~~~~~---~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~~~ 91 (95)
T cd05719 16 PVTVATCVSANGKPPATISWETTLG---GEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQRFSV 91 (95)
T ss_pred ccEEEEEECCCCcCCCEEEEEeCCC---CcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEE
Confidence 356678998 688999999998611 111111100000112225567776666777788999999987655444433
No 166
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.45 E-value=8.5e-06 Score=38.64 Aligned_cols=69 Identities=20% Similarity=0.355 Sum_probs=40.0
Q ss_pred CCeEEEEEEecccCCC--eeEEEeCCEEcccccee-eEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150 12 GHKIVFICMAKGKPRP--HITWFKDGVELYTHMYV-NLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV 83 (97)
Q Consensus 12 g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~ 83 (97)
++.+.|.|.+.|+.++ .+.|.+++......... .............+.+.+.. .+...|.|.+.+....
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~---~~~~~ytC~V~H~~~~ 85 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPP---EDKARYSCRVEHSGLK 85 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECC---CCCCEEEEEEEeCCCC
Confidence 5679999999997655 68999998643222111 11100000111233444443 3678999999876543
No 167
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.42 E-value=3.6e-06 Score=40.74 Aligned_cols=71 Identities=13% Similarity=0.238 Sum_probs=43.4
Q ss_pred EEcCCeEEEEEEecccCCCeeEEEeC--C--EEc---c-cc--ceee-------EEEEEecCceEEEEEEEccCCCCCCE
Q psy9150 9 YVLGHKIVFICMAKGKPRPHITWFKD--G--VEL---Y-TH--MYVN-------LHEWHYGTDRIKSKIEIDPATQMDAG 71 (97)
Q Consensus 9 ~~~g~~~~l~c~~~~~~~p~i~w~~~--~--~~~---~-~~--~~~~-------~~~~~~~~~~~~~~l~i~~~~~~~~g 71 (97)
+..|+.+.|.|.........+.|++. + ... . .. .... ...+..........|.|..++.+|+|
T Consensus 3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDsg 82 (104)
T cd05720 3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENEG 82 (104)
T ss_pred ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHCE
Confidence 56799999999986555566999982 2 111 0 00 0000 00011111123457999999999999
Q ss_pred EEEEEEEc
Q psy9150 72 IYECYADN 79 (97)
Q Consensus 72 ~y~c~~~~ 79 (97)
.|.|.+.+
T Consensus 83 tY~Ca~~~ 90 (104)
T cd05720 83 YYFCSVAS 90 (104)
T ss_pred EEEEEEcc
Confidence 99998763
No 168
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.42 E-value=1.1e-06 Score=42.51 Aligned_cols=73 Identities=16% Similarity=0.345 Sum_probs=43.6
Q ss_pred cCCeEEEEEEecccCCCe--eEEEeCCEEccccceeeEEEEEe----cCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150 11 LGHKIVFICMAKGKPRPH--ITWFKDGVELYTHMYVNLHEWHY----GTDRIKSKIEIDPATQMDAGIYECYADNMYNV 83 (97)
Q Consensus 11 ~g~~~~l~c~~~~~~~p~--i~w~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~ 83 (97)
.+..+.|.|.+.|+.++. +.|+++|..+............. ......+.|.+..-...+...|.|.+......
T Consensus 15 ~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l~ 93 (102)
T cd05768 15 LQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEALP 93 (102)
T ss_pred cCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCCC
Confidence 467899999999977665 69999998865332111100000 11122445666544334556799999876543
No 169
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.40 E-value=1.4e-05 Score=40.55 Aligned_cols=72 Identities=17% Similarity=0.314 Sum_probs=43.3
Q ss_pred cCCeEEEEEEecccCCC--eeEEEeCCEEccc----cceee---EEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150 11 LGHKIVFICMAKGKPRP--HITWFKDGVELYT----HMYVN---LHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY 81 (97)
Q Consensus 11 ~g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~----~~~~~---~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~ 81 (97)
.|..+.|.|.+.|.+++ .+.|++++..... ..... ............+.|.+......+...|.|.+.+..
T Consensus 52 ~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 52 IEEPQTLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS 131 (139)
T ss_pred cCCcEEEEEEECCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence 57778999999986543 7999998754221 01111 000000112234567777666666789999998765
Q ss_pred C
Q psy9150 82 N 82 (97)
Q Consensus 82 g 82 (97)
.
T Consensus 132 l 132 (139)
T cd05771 132 L 132 (139)
T ss_pred C
Confidence 4
No 170
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.39 E-value=2.5e-06 Score=40.75 Aligned_cols=76 Identities=11% Similarity=0.211 Sum_probs=42.0
Q ss_pred EEcCCeEEEEEEeccc-CCCe--eEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150 9 YVLGHKIVFICMAKGK-PRPH--ITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD 84 (97)
Q Consensus 9 ~~~g~~~~l~c~~~~~-~~p~--i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~ 84 (97)
+..++.+.|.|.+.|+ .++. +.|.++++.....................+.+.+......+...|.|.+.......
T Consensus 11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l~~ 89 (96)
T cd07696 11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDLPT 89 (96)
T ss_pred hccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCCCC
Confidence 4457889999999998 5554 78999874322110000000000111224455555443334567999998876443
No 171
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=98.38 E-value=2.2e-05 Score=37.31 Aligned_cols=65 Identities=20% Similarity=0.334 Sum_probs=40.3
Q ss_pred CCeEEEEEEecccCCCe--eEEEeCCEEccccceeeEEEEEecCce---EEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150 12 GHKIVFICMAKGKPRPH--ITWFKDGVELYTHMYVNLHEWHYGTDR---IKSKIEIDPATQMDAGIYECYADNMYN 82 (97)
Q Consensus 12 g~~~~l~c~~~~~~~p~--i~w~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~~~g~y~c~~~~~~g 82 (97)
|....|.|.+.|+.++. +.|.++|..+. ....... ....+. ....|.+. ..+...|.|.+.....
T Consensus 15 g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~--~p~~d~tyq~~s~l~~~---~~~~~~ysC~V~H~~l 84 (93)
T cd05770 15 GKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDL--SFSKDWTFYLLKSTEFT---PTKGDEYACRVRHNSM 84 (93)
T ss_pred CCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcE--EECCCCCEEEEEEEEEC---CCCCCeEEEEEEECCC
Confidence 44568999999987665 68999999876 3221111 112221 23334444 4567789999987543
No 172
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.35 E-value=6.1e-06 Score=39.72 Aligned_cols=72 Identities=13% Similarity=0.204 Sum_probs=43.4
Q ss_pred cCCeEEEEEEecccCCC--eeEEEeCCEEccccceeeE-EEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150 11 LGHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNL-HEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN 82 (97)
Q Consensus 11 ~g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g 82 (97)
.+..+.|.|.+.|+.+. .+.|+++|..+........ ...........+.|.+......+...|.|.+.....
T Consensus 16 ~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l 90 (100)
T cd07699 16 KSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGL 90 (100)
T ss_pred cCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCC
Confidence 45678999999886644 4799999988753221111 100011122244565655544456789999987654
No 173
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=98.33 E-value=3.1e-05 Score=36.87 Aligned_cols=70 Identities=23% Similarity=0.333 Sum_probs=42.2
Q ss_pred cCCeEEEEEEecccCCCe--eEEEeCCEEcccccee-eEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150 11 LGHKIVFICMAKGKPRPH--ITWFKDGVELYTHMYV-NLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV 83 (97)
Q Consensus 11 ~g~~~~l~c~~~~~~~p~--i~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~ 83 (97)
.+....|.|.+.|+.++. +.|+++|..+...... .............+.|.+. .++...|.|.+......
T Consensus 13 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~---~~~~~~ysC~V~H~~l~ 85 (94)
T cd05766 13 LSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETT---PSRGDTYTCVVEHSSLQ 85 (94)
T ss_pred CCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEc---CCCCCEEEEEEEeCCCC
Confidence 577899999999976664 6899999886543111 1111100111223344444 34566899999876544
No 174
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.32 E-value=2.8e-05 Score=37.16 Aligned_cols=34 Identities=18% Similarity=0.286 Sum_probs=27.6
Q ss_pred EEEEEEccCCCCCCEEEEEEEEc-CCCceeEEEEE
Q psy9150 57 KSKIEIDPATQMDAGIYECYADN-MYNVDTRTFKT 90 (97)
Q Consensus 57 ~~~l~i~~~~~~~~g~y~c~~~~-~~g~~~~~~~~ 90 (97)
..++.|.+++.+|.|.|.|.+.. +.|...+.+.+
T Consensus 59 d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~ 93 (96)
T cd05889 59 DMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEV 93 (96)
T ss_pred ccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEE
Confidence 56899999999999999998865 57777766544
No 175
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=98.31 E-value=3.1e-05 Score=35.92 Aligned_cols=68 Identities=16% Similarity=0.302 Sum_probs=43.3
Q ss_pred CCeEEEEEEecccCCC--eeEEEeCCEEccccceeeEEEEEecCce--EEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150 12 GHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHYGTDR--IKSKIEIDPATQMDAGIYECYADNMYNV 83 (97)
Q Consensus 12 g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~~~g~y~c~~~~~~g~ 83 (97)
+..+.|.|.+.++.+. .+.|++++..+........... ..+.. ..+.+.+. ..+...|.|.+......
T Consensus 8 ~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~-~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~ 79 (83)
T PF07654_consen 8 GGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPP-NSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP 79 (83)
T ss_dssp TSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEE-ETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred CCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeeccccc-ccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence 7789999999887655 4889999988765433222211 12222 24445555 44556899999876543
No 176
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=98.30 E-value=6.9e-06 Score=40.52 Aligned_cols=78 Identities=17% Similarity=0.330 Sum_probs=46.4
Q ss_pred cCCeEEEEEEecccCCC--eeEEEeCCEEccccceeeEEEEEec--CceEEEEEEEccCCCCC-CEEEEEEEEcCCCcee
Q psy9150 11 LGHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHYG--TDRIKSKIEIDPATQMD-AGIYECYADNMYNVDT 85 (97)
Q Consensus 11 ~g~~~~l~c~~~~~~~p--~i~w~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~~-~g~y~c~~~~~~g~~~ 85 (97)
.+..+.|.|.+.++.++ .+.|++++..+.............. .....+.|.+......+ ...|.|.+........
T Consensus 17 ~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~~~ 96 (115)
T cd05769 17 NKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGTDT 96 (115)
T ss_pred cCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCccc
Confidence 35568999999997666 5799999988764321110000101 12224556666544333 5689999988766555
Q ss_pred EEE
Q psy9150 86 RTF 88 (97)
Q Consensus 86 ~~~ 88 (97)
..+
T Consensus 97 ~~~ 99 (115)
T cd05769 97 DKW 99 (115)
T ss_pred eee
Confidence 433
No 177
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=98.29 E-value=2.9e-05 Score=36.99 Aligned_cols=66 Identities=23% Similarity=0.392 Sum_probs=40.2
Q ss_pred CCeEEEEEEecccCCCe--eEEEeCCEEccccceeeEEEEEecCc---eEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150 12 GHKIVFICMAKGKPRPH--ITWFKDGVELYTHMYVNLHEWHYGTD---RIKSKIEIDPATQMDAGIYECYADNMYN 82 (97)
Q Consensus 12 g~~~~l~c~~~~~~~p~--i~w~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~~~g~y~c~~~~~~g 82 (97)
+....|.|.+.|+.+.. +.|.++|..+......... ....+ ...+.|.+.. .+...|.|.+.....
T Consensus 15 ~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~--~~~~Dgty~~~s~L~v~~---~~~~~ytC~V~H~~l 85 (94)
T cd05767 15 GEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRY--YPRQDLSFQKFSYLNFTP---EEGDIYSCIVEHWGL 85 (94)
T ss_pred CCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeee--EeCCCCcEEEEEEEEEEC---CCCCeEEEEEEeCCC
Confidence 44578999999977654 6899999887543211111 11211 1234455543 355689999987643
No 178
>PHA03376 BARF1; Provisional
Probab=98.27 E-value=6.6e-05 Score=40.04 Aligned_cols=76 Identities=16% Similarity=0.132 Sum_probs=46.6
Q ss_pred eeEEEcCCeEEEEEEeccc---CCCeeEEEeCCE----Ecc---------ccceeeEEEEEecCceEEEEEEEccCCCCC
Q psy9150 6 DYEYVLGHKIVFICMAKGK---PRPHITWFKDGV----ELY---------THMYVNLHEWHYGTDRIKSKIEIDPATQMD 69 (97)
Q Consensus 6 ~~~~~~g~~~~l~c~~~~~---~~p~i~w~~~~~----~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~ 69 (97)
.+.+..|+.+.|.|..... ..-.|.|++.+. -+- +...++....... +..+-+|.|.+++.+|
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~-~~gnvsLvI~~l~lSD 98 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHR-SANTFFLVVTAANISH 98 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEe-cCCeEEEEEEeeeecC
Confidence 4567789999999997522 233588999432 111 1111111111111 1135689999999999
Q ss_pred CEEEEEEEEcCCC
Q psy9150 70 AGIYECYADNMYN 82 (97)
Q Consensus 70 ~g~y~c~~~~~~g 82 (97)
.|.|.|.......
T Consensus 99 dGtY~C~fQkge~ 111 (221)
T PHA03376 99 DGNYLCRMKLGET 111 (221)
T ss_pred CceEEEEEEcCCC
Confidence 9999999876543
No 179
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=98.26 E-value=2.1e-05 Score=38.88 Aligned_cols=76 Identities=16% Similarity=0.230 Sum_probs=45.7
Q ss_pred ceeeEEEcCCeEEEEEEecccC--CCeeEEEe--CCEEcc------cc-cee---eE--EEEEecCc--eEEEEEEEccC
Q psy9150 4 HFDYEYVLGHKIVFICMAKGKP--RPHITWFK--DGVELY------TH-MYV---NL--HEWHYGTD--RIKSKIEIDPA 65 (97)
Q Consensus 4 ~~~~~~~~g~~~~l~c~~~~~~--~p~i~w~~--~~~~~~------~~-~~~---~~--~~~~~~~~--~~~~~l~i~~~ 65 (97)
+..+.+..|+.+.|.|...... ...+.||+ .|+... .. ... .. ..+..... .....|.|..+
T Consensus 4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~ 83 (117)
T cd04981 4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL 83 (117)
T ss_pred CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence 4567788999999999875433 45689998 222110 00 000 00 00011101 11336999999
Q ss_pred CCCCCEEEEEEEEc
Q psy9150 66 TQMDAGIYECYADN 79 (97)
Q Consensus 66 ~~~~~g~y~c~~~~ 79 (97)
+.+|+|.|.|....
T Consensus 84 ~~~Dsa~YyCa~~~ 97 (117)
T cd04981 84 TPEDTAVYYCARGL 97 (117)
T ss_pred CHHHCEEEEEEEEc
Confidence 99999999998764
No 180
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=98.16 E-value=5.3e-05 Score=36.24 Aligned_cols=66 Identities=8% Similarity=0.109 Sum_probs=39.1
Q ss_pred CCeEEEEEEecccCCCe--eEEEeCCEEccccceeeEEEEEecCceE--EEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150 12 GHKIVFICMAKGKPRPH--ITWFKDGVELYTHMYVNLHEWHYGTDRI--KSKIEIDPATQMDAGIYECYADNMY 81 (97)
Q Consensus 12 g~~~~l~c~~~~~~~p~--i~w~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~~~g~y~c~~~~~~ 81 (97)
+..+.|.|.+.++.++. +.|.++|..+......... ....+.+ .+.|.+..-. ....|.|.+....
T Consensus 16 ~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~--~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~g 85 (96)
T cd07697 16 QGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEK--DKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHEG 85 (96)
T ss_pred CCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccE--ecCCCEEEEEEEEEECchh--CCCeEEEEEEECC
Confidence 45689999999977665 6899999886543211111 1122222 3345544332 2345999998744
No 181
>smart00406 IGv Immunoglobulin V-Type.
Probab=98.00 E-value=7.8e-05 Score=33.96 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=18.1
Q ss_pred EEEEEEccCCCCCCEEEEEE
Q psy9150 57 KSKIEIDPATQMDAGIYECY 76 (97)
Q Consensus 57 ~~~l~i~~~~~~~~g~y~c~ 76 (97)
..+|.|.+++.+|.|.|.|.
T Consensus 61 ~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 61 DVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred EEEEEEcCCCHHHCEEEEEc
Confidence 46799999999999999995
No 182
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.97 E-value=0.00019 Score=34.29 Aligned_cols=70 Identities=11% Similarity=0.135 Sum_probs=39.4
Q ss_pred cCCeEEEEEEecccCCCe--eEEEeCCEEcccccee-eEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150 11 LGHKIVFICMAKGKPRPH--ITWFKDGVELYTHMYV-NLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY 81 (97)
Q Consensus 11 ~g~~~~l~c~~~~~~~p~--i~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~ 81 (97)
.++.+.|.|.+.++.+.. +.|.++|.. ...... .............+.|.+....-.....|.|.+....
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 355689999999976654 689999987 322111 0000001112224445555432223567999998765
No 183
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.92 E-value=0.00036 Score=33.47 Aligned_cols=76 Identities=17% Similarity=0.229 Sum_probs=46.6
Q ss_pred eeeEEEcCCeEEE-EEEe-cccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150 5 FDYEYVLGHKIVF-ICMA-KGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN 82 (97)
Q Consensus 5 ~~~~~~~g~~~~l-~c~~-~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g 82 (97)
..+.+.+|+.+.+ .|.+ .|.|++.|.|+.+...... ..............+.+.+...+..+...+.|.+.+..-
T Consensus 9 ~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~---~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al 85 (97)
T cd07704 9 PSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSE---SHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL 85 (97)
T ss_pred CeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccc---eeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence 3456667777777 7776 7889999999975322111 111100001122345677766667778889999988755
Q ss_pred c
Q psy9150 83 V 83 (97)
Q Consensus 83 ~ 83 (97)
.
T Consensus 86 ~ 86 (97)
T cd07704 86 Q 86 (97)
T ss_pred C
Confidence 3
No 184
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=97.83 E-value=7.3e-05 Score=37.99 Aligned_cols=35 Identities=17% Similarity=0.260 Sum_probs=29.6
Q ss_pred EEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEEE
Q psy9150 59 KIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFS 93 (97)
Q Consensus 59 ~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~~ 93 (97)
+|.|.+++..|.|.|.|.+.+..+.....+.|.+.
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~ 36 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVS 36 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEe
Confidence 58899999999999999999888877777766653
No 185
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.71 E-value=0.00033 Score=33.73 Aligned_cols=70 Identities=14% Similarity=0.186 Sum_probs=39.1
Q ss_pred cCCeEEEEEEecccC-C--CeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150 11 LGHKIVFICMAKGKP-R--PHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN 82 (97)
Q Consensus 11 ~g~~~~l~c~~~~~~-~--p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g 82 (97)
.+..+.+.|.+.++. + -.+.|.++|.. . .................+.|.+..-.-.....|.|.+.+...
T Consensus 18 ~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~-~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l 90 (99)
T cd04986 18 LGSSASLTCTLSGLRDPEGAVFTWTPSGGK-E-AVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG 90 (99)
T ss_pred cCCccEEEEEEeccCCCCCeEEEEEECCcc-C-cEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence 466789999999866 3 35889998865 1 110000000001112244555553333444679999987654
No 186
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.68 E-value=0.00074 Score=30.16 Aligned_cols=49 Identities=22% Similarity=0.491 Sum_probs=33.3
Q ss_pred CCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEc
Q psy9150 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADN 79 (97)
Q Consensus 12 g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~ 79 (97)
.+.+.|.|.. ...|.|++ |..+.... ..++.+-....+..|.|.|.+.+
T Consensus 6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~~--------------~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNG----ATNITWKK-GKEILEVS--------------NTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecC----CCcEEEec-Cccccccc--------------ccEEeccCcccCCCcceEecCcc
Confidence 3468889965 25599999 54443221 23566677777889999998765
No 187
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.67 E-value=0.00056 Score=30.27 Aligned_cols=52 Identities=25% Similarity=0.363 Sum_probs=33.1
Q ss_pred EEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEc
Q psy9150 9 YVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADN 79 (97)
Q Consensus 9 ~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~ 79 (97)
...|..+.|.|+... ..+.|.+++..+.... ..+...+-. +++|.|.|.+.+
T Consensus 4 sisGTtVtlTCP~~~---~~i~W~~n~~~~~g~~---------------~~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 4 SISGTTVTVTCPLSG---DDIKWKKNDQVSQGSD---------------EKYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred EEeccEEEEECCCCC---CCceEEeCCccCCCCC---------------ceEEeeccC-CCCceEEEEeCC
Confidence 456889999998653 2299999885554311 112222222 678999998854
No 188
>PHA02633 hypothetical protein; Provisional
Probab=97.61 E-value=0.00061 Score=29.77 Aligned_cols=36 Identities=31% Similarity=0.397 Sum_probs=27.7
Q ss_pred EEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEEE
Q psy9150 58 SKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFS 93 (97)
Q Consensus 58 ~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~~ 93 (97)
..|.|.++..+|+|.|.|...|..--....+.++|.
T Consensus 18 ~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~ 53 (63)
T PHA02633 18 NNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCIC 53 (63)
T ss_pred ccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEe
Confidence 358888899999999999998766555666666554
No 189
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=97.31 E-value=0.00054 Score=34.53 Aligned_cols=83 Identities=11% Similarity=0.240 Sum_probs=43.9
Q ss_pred cCCeEEEEEEecc-----cCCCeeEEEeCCEEccccceeeEEE-E-------EecCceEEEEEEEccCCCCCCEEEEEEE
Q psy9150 11 LGHKIVFICMAKG-----KPRPHITWFKDGVELYTHMYVNLHE-W-------HYGTDRIKSKIEIDPATQMDAGIYECYA 77 (97)
Q Consensus 11 ~g~~~~l~c~~~~-----~~~p~i~w~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~l~i~~~~~~~~g~y~c~~ 77 (97)
-++.+.++|.+.. .+.-.+.|..++..+.......... . .........+|.+.....- .|.|+|-+
T Consensus 26 CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeV 104 (130)
T PF08204_consen 26 CNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEV 104 (130)
T ss_dssp T-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEE
T ss_pred cCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEE
Confidence 3678899999854 1234599999887664211100000 0 0000111334666553332 79999999
Q ss_pred EcCCCceeEEEEEEEEE
Q psy9150 78 DNMYNVDTRTFKTDFSI 94 (97)
Q Consensus 78 ~~~~g~~~~~~~~~~~~ 94 (97)
..........+.|.+.+
T Consensus 105 t~~~~ege~~i~Lk~~~ 121 (130)
T PF08204_consen 105 TELSREGETTIELKYRV 121 (130)
T ss_dssp EETTEEEEEEEEEEE--
T ss_pred EecCCCceEEEEEEEEE
Confidence 98888888877777643
No 190
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=96.92 E-value=0.0089 Score=33.69 Aligned_cols=49 Identities=24% Similarity=0.399 Sum_probs=36.1
Q ss_pred CCCeeEEEe-CCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCC
Q psy9150 25 PRPHITWFK-DGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY 81 (97)
Q Consensus 25 ~~p~i~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~ 81 (97)
..|...|.. +|..+......++.. ...|.+..-...++|.|+|......
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~--------TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITE--------TGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEcc--------CceEEeeccccccCCceEEEEEEEe
Confidence 468889988 455565555555532 3469999999999999999987654
No 191
>KOG1480|consensus
Probab=96.66 E-value=0.001 Score=42.44 Aligned_cols=69 Identities=23% Similarity=0.403 Sum_probs=50.5
Q ss_pred EEEcCCeEEEEEEe-cccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCce
Q psy9150 8 EYVLGHKIVFICMA-KGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVD 84 (97)
Q Consensus 8 ~~~~g~~~~l~c~~-~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~ 84 (97)
.+..+....+.|.. .+.|...+.|++++..+++...... .....+++..++..|.|.|+|.+.|..+..
T Consensus 140 ~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~--------~~d~~li~~~arlsd~~nytc~a~ni~~~r 209 (909)
T KOG1480|consen 140 EVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIR--------ASDHNLIISQARLSDSGNYTCEATNIVAKR 209 (909)
T ss_pred eecccccccccccCcccchhhhhhccccCCCCCccccchh--------hhcCCccccchhhhhcccceeeeehhhccc
Confidence 45556667777775 6778888999999877766322211 113467888999999999999999988765
No 192
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=96.56 E-value=0.03 Score=27.80 Aligned_cols=72 Identities=8% Similarity=0.062 Sum_probs=42.6
Q ss_pred eeEEEcCCeEEEEEEecccCCC---eeEEEe--CCEEcc------c-cceeeEE----EEEecCceEEEEEEEccCCCCC
Q psy9150 6 DYEYVLGHKIVFICMAKGKPRP---HITWFK--DGVELY------T-HMYVNLH----EWHYGTDRIKSKIEIDPATQMD 69 (97)
Q Consensus 6 ~~~~~~g~~~~l~c~~~~~~~p---~i~w~~--~~~~~~------~-~~~~~~~----~~~~~~~~~~~~l~i~~~~~~~ 69 (97)
...+..|..+.|.|...|.... .+.|++ ++ .+. . ....... ..........-.|.+..++.+|
T Consensus 7 ~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg-~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~D 85 (115)
T cd05721 7 PVLASSNGAASLVCEYTYNGFSKEFRASLLKGADS-AVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQ 85 (115)
T ss_pred CeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCC-CcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHH
Confidence 3456677889999999775433 478887 33 110 0 0000000 0011111224579999999999
Q ss_pred CEEEEEEEE
Q psy9150 70 AGIYECYAD 78 (97)
Q Consensus 70 ~g~y~c~~~ 78 (97)
.+.|.|...
T Consensus 86 Ta~Y~Ca~e 94 (115)
T cd05721 86 TDIYFCKIE 94 (115)
T ss_pred CeEEEEEee
Confidence 999999654
No 193
>PHA03042 CD47-like protein; Provisional
Probab=96.46 E-value=0.065 Score=30.55 Aligned_cols=71 Identities=21% Similarity=0.344 Sum_probs=45.3
Q ss_pred cCCeEEEEEEeccc-----CCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCcee
Q psy9150 11 LGHKIVFICMAKGK-----PRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT 85 (97)
Q Consensus 11 ~g~~~~l~c~~~~~-----~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~ 85 (97)
-++++.++|.+... ..-.+.|..++..+......+ .+++.+.-.. .-.|.|+|-+.+......
T Consensus 30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~tn-----------~aSL~~~f~~-~l~GNYTCEv~~l~n~gk 97 (286)
T PHA03042 30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNTN-----------TSSLKFNFSK-NLSGNYTCEAINKFNKIK 97 (286)
T ss_pred cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCCc-----------ceEEEEeccc-cCCCceeEEEeecccCcc
Confidence 36788999998542 355699999988765432211 2344444322 337999999988766666
Q ss_pred EEEEEEEE
Q psy9150 86 RTFKTDFS 93 (97)
Q Consensus 86 ~~~~~~~~ 93 (97)
....+++.
T Consensus 98 ~~IeLk~~ 105 (286)
T PHA03042 98 NTIELQYV 105 (286)
T ss_pred EEEEEEEE
Confidence 66666553
No 194
>KOG3515|consensus
Probab=96.43 E-value=0.0026 Score=40.62 Aligned_cols=68 Identities=13% Similarity=0.252 Sum_probs=45.6
Q ss_pred eeEEEcCCeEEEEEEecccC-CCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150 6 DYEYVLGHKIVFICMAKGKP-RPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV 83 (97)
Q Consensus 6 ~~~~~~g~~~~l~c~~~~~~-~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~ 83 (97)
+..+.+|+.+.|.|.+.+.| .+.+.|++.+..... .+. .....+|......++..+.|.|.+.|..+.
T Consensus 16 ~~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~~-~~~---------~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~ 84 (741)
T KOG3515|consen 16 TVGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEHG-RYA---------TIADPTLVTTGDVRDTVAELNCRAFNSVGM 84 (741)
T ss_pred ChhhccCCcceeeeecCCCCCCcceEEEecCccccc-ccc---------cccCCceeeecchhhhhhhhhhhhcccccC
Confidence 33778899999999997665 456999997655441 111 111345666666666678888888887554
No 195
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=96.30 E-value=0.044 Score=26.81 Aligned_cols=35 Identities=23% Similarity=0.293 Sum_probs=26.2
Q ss_pred EEEEEEccCCCCCCEEEEEEEEcCCCce-eEEEEEE
Q psy9150 57 KSKIEIDPATQMDAGIYECYADNMYNVD-TRTFKTD 91 (97)
Q Consensus 57 ~~~l~i~~~~~~~~g~y~c~~~~~~g~~-~~~~~~~ 91 (97)
..+|.|..++.+|+|.|..-+.+..|.. .+.|.+.
T Consensus 70 nlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVs 105 (108)
T PF11465_consen 70 NLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVS 105 (108)
T ss_dssp TTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEE
T ss_pred CceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEE
Confidence 3479999999999999999999988886 3445443
No 196
>KOG4597|consensus
Probab=96.30 E-value=0.011 Score=36.10 Aligned_cols=82 Identities=15% Similarity=0.055 Sum_probs=54.6
Q ss_pred EEcCCeEEEEEEecccCCCeeEEEe---CCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCcee
Q psy9150 9 YVLGHKIVFICMAKGKPRPHITWFK---DGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT 85 (97)
Q Consensus 9 ~~~g~~~~l~c~~~~~~~p~i~w~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~ 85 (97)
+-.++...+.|.+.|.+.+.|.|.+ ++..+.........+ ........|.|-+....+.|-|.|.+.+..|...
T Consensus 208 vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~---p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~ 284 (560)
T KOG4597|consen 208 VGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVEN---PVVTSTCQLVICNEWQADAGWYTCSARCGAGFLR 284 (560)
T ss_pred cccchhhcccccccCCcCceeeeehhhccccceeecCccccCC---cceeeeeeEEEcchhhcCCCceeeccccccceee
Confidence 3345677788999999999999975 333322111110000 0111234688888889999999999999999888
Q ss_pred EEEEEEEE
Q psy9150 86 RTFKTDFS 93 (97)
Q Consensus 86 ~~~~~~~~ 93 (97)
..+.+.+.
T Consensus 285 rdv~c~s~ 292 (560)
T KOG4597|consen 285 RDVPCSSV 292 (560)
T ss_pred ccceeeee
Confidence 87766543
No 197
>KOG3515|consensus
Probab=95.94 E-value=0.05 Score=35.24 Aligned_cols=72 Identities=21% Similarity=0.268 Sum_probs=43.2
Q ss_pred EEcCCeEEEEEEe--cccCCCeeEEEeCCEEccccce-eeEEEEEec-Cc-eEEEEEEEccCCCCCCEEEEEEEEcC
Q psy9150 9 YVLGHKIVFICMA--KGKPRPHITWFKDGVELYTHMY-VNLHEWHYG-TD-RIKSKIEIDPATQMDAGIYECYADNM 80 (97)
Q Consensus 9 ~~~g~~~~l~c~~--~~~~~p~i~w~~~~~~~~~~~~-~~~~~~~~~-~~-~~~~~l~i~~~~~~~~g~y~c~~~~~ 80 (97)
...+..+.+.|.. .+.|.+.+.|..++........ ......... .. ...+.+.+...+..+.|.|+|.+.+.
T Consensus 109 ~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr 185 (741)
T KOG3515|consen 109 QVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNR 185 (741)
T ss_pred hhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEcccccc
Confidence 3455677788854 5678888999987765432221 011110001 11 11345666777788899999999984
No 198
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=95.67 E-value=0.17 Score=30.63 Aligned_cols=79 Identities=19% Similarity=0.235 Sum_probs=49.7
Q ss_pred CceeeEEEcCCeEEEEEEecc---cCCCeeEEEeCCEEcccc-----------------c-eeeEEEEEecCceEEEEEE
Q psy9150 3 SHFDYEYVLGHKIVFICMAKG---KPRPHITWFKDGVELYTH-----------------M-YVNLHEWHYGTDRIKSKIE 61 (97)
Q Consensus 3 ~~~~~~~~~g~~~~l~c~~~~---~~~p~i~w~~~~~~~~~~-----------------~-~~~~~~~~~~~~~~~~~l~ 61 (97)
+...+.+..|.++.+.|..+- .....+.|+..|-++.+. . ..-......+.+--.++|.
T Consensus 270 ~~~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLT 349 (500)
T PHA02914 270 KFDEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLT 349 (500)
T ss_pred ccceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEE
Confidence 445677777999999999853 345568897644333211 0 1101111112233367899
Q ss_pred EccCCCCCCEEEEEEEEcCC
Q psy9150 62 IDPATQMDAGIYECYADNMY 81 (97)
Q Consensus 62 i~~~~~~~~g~y~c~~~~~~ 81 (97)
|..+.-...|-|.|.+....
T Consensus 350 Ikka~I~N~GCY~~~a~~g~ 369 (500)
T PHA02914 350 IKKAHINNAGCYEAQAFMGK 369 (500)
T ss_pred eeeEEEEcCCceEEEEecCc
Confidence 99999999999999987553
No 199
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=95.66 E-value=0.095 Score=25.36 Aligned_cols=74 Identities=12% Similarity=0.135 Sum_probs=38.2
Q ss_pred EEEcCCeEEEEEEeccc-CC--CeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCC
Q psy9150 8 EYVLGHKIVFICMAKGK-PR--PHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN 82 (97)
Q Consensus 8 ~~~~g~~~~l~c~~~~~-~~--p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g 82 (97)
.+..|..+.+.|.+.+. |. ..+.|++....+........ ....+.......+.+...+.++...|.|.+.-...
T Consensus 11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~-~~~ks~~~~~~~vtftptreD~g~~fsC~A~L~l~ 87 (99)
T cd07689 11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLED-MDKKSLETKSLEVTFTPTIEDIGKVLVCRAKLHID 87 (99)
T ss_pred cccCCceEEEEEEecCcccCCceEEEEecCcceecccccccc-cccCCCCCcceeEEEecchhhCCcEEEEEEEEeec
Confidence 34689999999999653 33 35888876554432211000 00000011112334444344445589999875443
No 200
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=95.60 E-value=0.098 Score=25.11 Aligned_cols=72 Identities=19% Similarity=0.321 Sum_probs=41.2
Q ss_pred EEEEEE-ecccCCCeeEEEe--CCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEE
Q psy9150 15 IVFICM-AKGKPRPHITWFK--DGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTD 91 (97)
Q Consensus 15 ~~l~c~-~~~~~~p~i~w~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~ 91 (97)
..-.|. +.|.|++.|.|.- +|.. . .+.......-....+.+.+-.....+.....|.+.........++.|.
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~l~G~~-e----tq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L~ 97 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTRLKGEA-E----FQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTLN 97 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEccCCCce-e----eeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEec
Confidence 344688 4889999999974 3332 1 000000001111234455566667778889999988765555555543
No 201
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=95.38 E-value=0.12 Score=24.53 Aligned_cols=65 Identities=17% Similarity=0.291 Sum_probs=39.0
Q ss_pred eeeEEEcCCeEEEEEEecc-----cCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEE
Q psy9150 5 FDYEYVLGHKIVFICMAKG-----KPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECY 76 (97)
Q Consensus 5 ~~~~~~~g~~~~l~c~~~~-----~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~ 76 (97)
....+..|+.+...|.... .....+.|..++..++...+..+ ... .+...+........-.|.|.
T Consensus 11 ~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~i-----n~~--~SsVT~~~~~~~~~~L~cC~ 80 (89)
T PF06328_consen 11 PSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVI-----NDT--VSSVTLPNLNPTGATLFCCK 80 (89)
T ss_dssp SSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEE-----STT--EEEEEESS--SSEEEEEEEE
T ss_pred CCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHccee-----CCe--EEEEEEccCCCCCceEEEEE
Confidence 4556889999999999842 24567999998887776554432 222 24556666555444455554
No 202
>PHA03052 Hypothetical protein; Provisional
Probab=94.79 E-value=0.15 Score=22.79 Aligned_cols=36 Identities=14% Similarity=0.325 Sum_probs=27.5
Q ss_pred CceeeEEEcCCeEEEEEEeccc---CCCeeEEEeCCEEc
Q psy9150 3 SHFDYEYVLGHKIVFICMAKGK---PRPHITWFKDGVEL 38 (97)
Q Consensus 3 ~~~~~~~~~g~~~~l~c~~~~~---~~p~i~w~~~~~~~ 38 (97)
.+..+.+..|.++.+.|.+.-. ..+.+.|..++..+
T Consensus 3 ~P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 3 LPEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY 41 (69)
T ss_pred CCccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence 3467788999999999998432 34458888888777
No 203
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=94.73 E-value=0.28 Score=29.04 Aligned_cols=21 Identities=10% Similarity=0.468 Sum_probs=17.6
Q ss_pred eEEEEEEecccCCCe--eEEEeC
Q psy9150 14 KIVFICMAKGKPRPH--ITWFKD 34 (97)
Q Consensus 14 ~~~l~c~~~~~~~p~--i~w~~~ 34 (97)
.+.|.|.+.|+.+.. +.|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 468999999987775 679998
No 204
>PHA02982 hypothetical protein; Provisional
Probab=92.92 E-value=0.92 Score=25.27 Aligned_cols=78 Identities=14% Similarity=0.280 Sum_probs=45.5
Q ss_pred eeEEEcCCeEEEEEEec-ccCCCeeEEEeC-CEEcccc--ceeeEEE-----------EEecCceEEEEEEEccCCCCCC
Q psy9150 6 DYEYVLGHKIVFICMAK-GKPRPHITWFKD-GVELYTH--MYVNLHE-----------WHYGTDRIKSKIEIDPATQMDA 70 (97)
Q Consensus 6 ~~~~~~g~~~~l~c~~~-~~~~p~i~w~~~-~~~~~~~--~~~~~~~-----------~~~~~~~~~~~l~i~~~~~~~~ 70 (97)
++..-.++.+.|.|... +.-.....|+.+ +..+... ....+.. ...+-....++|.+..+..+..
T Consensus 33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~ 112 (251)
T PHA02982 33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNL 112 (251)
T ss_pred hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccC
Confidence 44555688999999963 233445778763 2222200 0000000 0111112267899999999999
Q ss_pred EEEEEEEEcCCCc
Q psy9150 71 GIYECYADNMYNV 83 (97)
Q Consensus 71 g~y~c~~~~~~g~ 83 (97)
|-|+|.+....+.
T Consensus 113 GCYtc~~ks~~~k 125 (251)
T PHA02982 113 GCFTCEAKDAEGK 125 (251)
T ss_pred CceEEEEecCCCc
Confidence 9999999876544
No 205
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=92.31 E-value=0.6 Score=21.67 Aligned_cols=31 Identities=23% Similarity=0.308 Sum_probs=19.6
Q ss_pred EEEccCCCCCCEEEEEEE-EcCCCceeEEEEE
Q psy9150 60 IEIDPATQMDAGIYECYA-DNMYNVDTRTFKT 90 (97)
Q Consensus 60 l~i~~~~~~~~g~y~c~~-~~~~g~~~~~~~~ 90 (97)
.........|.|.+.|.+ .+..-.......+
T Consensus 45 ~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i 76 (80)
T PF05790_consen 45 VSTFTPTTEDSGTWVCTASDNEPKERESKIEI 76 (80)
T ss_dssp EEEESBTCGGSEEEEEEEEECTTEEEEEEEEE
T ss_pred EEEecCCCCCCEEEEEEEcCCceEEEEEEEEE
Confidence 444566678999999999 4444444444433
No 206
>PHA03271 envelope glycoprotein C; Provisional
Probab=91.96 E-value=1.9 Score=26.63 Aligned_cols=34 Identities=15% Similarity=0.310 Sum_probs=26.2
Q ss_pred EEEcCCeEEEEEEecccCCC---eeEEEeCCEEcccc
Q psy9150 8 EYVLGHKIVFICMAKGKPRP---HITWFKDGVELYTH 41 (97)
Q Consensus 8 ~~~~g~~~~l~c~~~~~~~p---~i~w~~~~~~~~~~ 41 (97)
.+..|+...-.|.+..+.+| .+.|+++|......
T Consensus 256 PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~ 292 (490)
T PHA03271 256 PVLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATPR 292 (490)
T ss_pred ccccCCCceEEEEeeeecCCCceEEEEEeCCccccCc
Confidence 35678889999999776655 48999999877543
No 207
>PHA03270 envelope glycoprotein C; Provisional
Probab=91.84 E-value=2 Score=26.60 Aligned_cols=71 Identities=14% Similarity=0.175 Sum_probs=40.8
Q ss_pred EEEcCCeEEEEEEecccCCC---eeEEEeCCEEccccceeeEEEEEe-cCceEEEEEEEccCCCCC-CEEEEEEEE
Q psy9150 8 EYVLGHKIVFICMAKGKPRP---HITWFKDGVELYTHMYVNLHEWHY-GTDRIKSKIEIDPATQMD-AGIYECYAD 78 (97)
Q Consensus 8 ~~~~g~~~~l~c~~~~~~~p---~i~w~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~~-~g~y~c~~~ 78 (97)
.+..|+...-.|.+..+.+| .+.|++|+..+............. ......+++.+....... --..+|.+.
T Consensus 230 PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~ 305 (466)
T PHA03270 230 AVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFT 305 (466)
T ss_pred ccccCCCceEEEEeeeecCCCceEEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEE
Confidence 35678888899999776655 489999998875322222111111 122334455555443322 246788754
No 208
>PHA03269 envelope glycoprotein C; Provisional
Probab=91.78 E-value=2.2 Score=26.93 Aligned_cols=33 Identities=15% Similarity=0.262 Sum_probs=26.0
Q ss_pred EEEcCCeEEEEEEecccCCC---eeEEEeCCEEccc
Q psy9150 8 EYVLGHKIVFICMAKGKPRP---HITWFKDGVELYT 40 (97)
Q Consensus 8 ~~~~g~~~~l~c~~~~~~~p---~i~w~~~~~~~~~ 40 (97)
-+..|+...-.|.+..+.+| .+.|++|+..+..
T Consensus 338 PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~ 373 (566)
T PHA03269 338 PVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGK 373 (566)
T ss_pred ccccCCCceEEEEeeeecCCCceEEEEEeCCcccCc
Confidence 35678888999999776655 4899999888764
No 209
>PHA03273 envelope glycoprotein C; Provisional
Probab=90.73 E-value=2.8 Score=26.24 Aligned_cols=71 Identities=17% Similarity=0.306 Sum_probs=41.4
Q ss_pred EEEcCCeEEEEEEecccCCC---eeEEEeCCEEccccceee--EEEEEecCceEEEEEEEccCCCCC-CEEEEEEEE
Q psy9150 8 EYVLGHKIVFICMAKGKPRP---HITWFKDGVELYTHMYVN--LHEWHYGTDRIKSKIEIDPATQMD-AGIYECYAD 78 (97)
Q Consensus 8 ~~~~g~~~~l~c~~~~~~~p---~i~w~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~~-~g~y~c~~~ 78 (97)
.+..|+...-.|.+..+.+| .+.|++++..+....... ......+.....+++.+......+ --..+|.+.
T Consensus 246 PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~ 322 (486)
T PHA03273 246 PSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIE 322 (486)
T ss_pred ccccCCCceEEEEeeeecCCCceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEE
Confidence 35678888999999776655 489999999887322211 111111111234556565544323 356788754
No 210
>PHA03376 BARF1; Provisional
Probab=84.02 E-value=1.3 Score=24.46 Aligned_cols=24 Identities=21% Similarity=0.589 Sum_probs=19.6
Q ss_pred CCeEEEEEEecccCCCeeEEEeCC
Q psy9150 12 GHKIVFICMAKGKPRPHITWFKDG 35 (97)
Q Consensus 12 g~~~~l~c~~~~~~~p~i~w~~~~ 35 (97)
.+...+.|...|+|.|.+.|..+.
T Consensus 139 ~~~~~i~C~sggfP~P~~~Wle~~ 162 (221)
T PHA03376 139 FSVLTVTCTVNAFPHPHVQWLMPE 162 (221)
T ss_pred CCeeEEEEecCCcCCchheecccc
Confidence 455678899889999999998743
No 211
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=78.41 E-value=8.4 Score=20.65 Aligned_cols=36 Identities=17% Similarity=0.080 Sum_probs=28.2
Q ss_pred EEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEEE
Q psy9150 58 SKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFS 93 (97)
Q Consensus 58 ~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~~ 93 (97)
-.|.|.+.+.+|+|.|.-.+.-.......-+.+.+.
T Consensus 124 ~lL~i~~p~~~dsG~Y~lRV~l~~~~~~d~F~~~v~ 159 (161)
T PF01688_consen 124 VLLRIRNPRPEDSGIYYLRVWLDGANKADVFRLSVF 159 (161)
T ss_pred eEEEeCCCCcccceEEEEEEEECCCCCCcEEEEeee
Confidence 358899999999999999988776666666666554
No 212
>PHA03189 UL14 tegument protein; Provisional
Probab=75.87 E-value=14 Score=22.06 Aligned_cols=22 Identities=14% Similarity=0.156 Sum_probs=16.8
Q ss_pred CceeeEEEcCCeEEEEEEeccc
Q psy9150 3 SHFDYEYVLGHKIVFICMAKGK 24 (97)
Q Consensus 3 ~~~~~~~~~g~~~~l~c~~~~~ 24 (97)
++..+.+..|+.+.+.|.+...
T Consensus 58 spAP~l~pyGdrvtVpC~fp~H 79 (348)
T PHA03189 58 SPAPLLVPYGDRVTVPCTFPTH 79 (348)
T ss_pred CCCccccCCCceeeeeeeecCC
Confidence 3456678889999999998543
No 213
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=75.42 E-value=7 Score=18.24 Aligned_cols=55 Identities=18% Similarity=0.153 Sum_probs=32.6
Q ss_pred eEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCcee
Q psy9150 14 KIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDT 85 (97)
Q Consensus 14 ~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~ 85 (97)
...+.+.+.+. .+.+.|+.||..+...... ..+.. .....|.|+..+....|...
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~~-------------~~~~~---~~~~~G~h~l~vvD~~G~~~ 85 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQPG-------------HQLFW---QPDRPGEHTLTVVDAQGRSA 85 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEEcccCCCC-------------CeEEe---CCCCCeeEEEEEEcCCCCEE
Confidence 44555555554 4589999999988432211 11211 22356888888877777644
No 214
>PHA03291 envelope glycoprotein I; Provisional
Probab=72.03 E-value=20 Score=21.96 Aligned_cols=39 Identities=10% Similarity=0.056 Sum_probs=31.0
Q ss_pred EEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEEEEe
Q psy9150 57 KSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFSIT 95 (97)
Q Consensus 57 ~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~~~~ 95 (97)
.-.|.+......|+|.|...+.-.......-|.+.+.++
T Consensus 128 ~vLL~i~~P~~~DsGiYvLRV~vdgat~adlF~lg~~~~ 166 (401)
T PHA03291 128 QPLLRARGAARAVVGLYVLRVWVEGATNASLFPLGLAAF 166 (401)
T ss_pred ceEEEecCCCcccceeEEEEEEeCCCcccceEEEeeeee
Confidence 345888999999999999999877777767777777643
No 215
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=68.48 E-value=27 Score=21.97 Aligned_cols=22 Identities=9% Similarity=0.128 Sum_probs=18.3
Q ss_pred EEEEEccCCCCCCEEEEEEEEc
Q psy9150 58 SKIEIDPATQMDAGIYECYADN 79 (97)
Q Consensus 58 ~~l~i~~~~~~~~g~y~c~~~~ 79 (97)
-.+.+.++...|.|.|.|...-
T Consensus 81 Ysf~~~Nvs~sdEGrYrCIFYL 102 (500)
T PHA02914 81 YSFIEENIGEHEDGDFKCIFYL 102 (500)
T ss_pred eEEEecCcccccCCcEEEEEEe
Confidence 3677888999999999998764
No 216
>PHA03282 envelope glycoprotein E; Provisional
Probab=67.89 E-value=22 Score=22.78 Aligned_cols=24 Identities=17% Similarity=0.350 Sum_probs=20.3
Q ss_pred EEEEEEccCCCCCCEEEEEEEEcC
Q psy9150 57 KSKIEIDPATQMDAGIYECYADNM 80 (97)
Q Consensus 57 ~~~l~i~~~~~~~~g~y~c~~~~~ 80 (97)
+.++.|..++..|+|.|+..+...
T Consensus 123 n~tl~l~~a~~~DsG~Y~L~~~~~ 146 (540)
T PHA03282 123 NGTLVLREARETDSGMYVLSVSRA 146 (540)
T ss_pred cceEEEeeccccCCceEEEEecCC
Confidence 567999999999999999986443
No 217
>PHA03290 envelope glycoprotein I; Provisional
Probab=66.83 E-value=26 Score=21.29 Aligned_cols=38 Identities=18% Similarity=0.127 Sum_probs=28.5
Q ss_pred EEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEEEE
Q psy9150 57 KSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFSI 94 (97)
Q Consensus 57 ~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~~~ 94 (97)
.-.|.|.+.+.+|+|.|...+.-.......-|.+.+.+
T Consensus 128 ~vLL~I~~P~~~DSGiY~LRV~Ldga~~sDvF~lsv~V 165 (357)
T PHA03290 128 EIIFKINKPGIEDAGIYLLLVQLDHSRLFDGFFLGLNV 165 (357)
T ss_pred ceEEEeCCCCcccCeeEEEEEEeCCCcccceEEEEEEE
Confidence 44688999999999999999886655555566666554
No 218
>COG5475 Uncharacterized small protein [Function unknown]
Probab=65.30 E-value=11 Score=16.35 Aligned_cols=18 Identities=33% Similarity=0.619 Sum_probs=13.9
Q ss_pred CEEEEEEEEcCCCceeEE
Q psy9150 70 AGIYECYADNMYNVDTRT 87 (97)
Q Consensus 70 ~g~y~c~~~~~~g~~~~~ 87 (97)
.|.|.|...+..|.....
T Consensus 28 ~Gmy~C~Wf~g~g~~~~~ 45 (60)
T COG5475 28 DGMYECRWFDGYGVKREA 45 (60)
T ss_pred CCeEEEEEecCCCccccc
Confidence 399999999888865443
No 219
>PHA03292 envelope glycoprotein I; Provisional
Probab=62.53 E-value=35 Score=21.22 Aligned_cols=38 Identities=13% Similarity=0.093 Sum_probs=28.4
Q ss_pred EEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEEEE
Q psy9150 57 KSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFSI 94 (97)
Q Consensus 57 ~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~~~ 94 (97)
...|.|...+..|+|.|...+.-.......-|.+.+.+
T Consensus 127 ~vLL~I~~P~~~DSGiY~LRV~Ldga~~aDvF~lsvfV 164 (413)
T PHA03292 127 NVLLNITGPQPADSGAYILRVKLDHAPTADVFGLSAFV 164 (413)
T ss_pred ceEEEeCCCCcccceeEEEEEEeCCCccCceeEEEEEE
Confidence 34688999999999999999887666555556555543
No 220
>PHA03283 envelope glycoprotein E; Provisional
Probab=61.40 E-value=41 Score=21.90 Aligned_cols=36 Identities=22% Similarity=0.226 Sum_probs=27.0
Q ss_pred EEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEE
Q psy9150 57 KSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDF 92 (97)
Q Consensus 57 ~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~ 92 (97)
.+.+.|.++..++.|.|+-...+..+.....+.|++
T Consensus 133 ~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtV 168 (542)
T PHA03283 133 RSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTV 168 (542)
T ss_pred CCeeEEEecccccCeEEEEEecCCCceEEEEEEEEe
Confidence 356899999999999999998876664444554444
No 221
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=56.17 E-value=21 Score=16.76 Aligned_cols=29 Identities=14% Similarity=0.233 Sum_probs=16.0
Q ss_pred CCCEEEEEEEEcCCCceeEEEEEEEEEee
Q psy9150 68 MDAGIYECYADNMYNVDTRTFKTDFSITF 96 (97)
Q Consensus 68 ~~~g~y~c~~~~~~g~~~~~~~~~~~~~~ 96 (97)
.+.|.+.|........+...+.+.+++.+
T Consensus 25 rhRGF~vcamnmt~~~da~~~nie~tV~s 53 (86)
T COG3978 25 RHRGFRVCAMNMTAAVDAGNANIELTVDS 53 (86)
T ss_pred hhcCeEEEEeecccccccccceEEEEEcC
Confidence 34677888665444434444555555544
No 222
>PHA03289 envelope glycoprotein I; Provisional
Probab=55.81 E-value=45 Score=20.30 Aligned_cols=37 Identities=19% Similarity=0.175 Sum_probs=27.9
Q ss_pred EEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEEEEE
Q psy9150 58 SKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFSI 94 (97)
Q Consensus 58 ~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~~~~ 94 (97)
.-|.+...+..|+|.|.-.+.-.......-|.+.+.+
T Consensus 122 vLL~I~~Pr~~DSGiYyLRV~Ldga~~sDvF~lsv~V 158 (352)
T PHA03289 122 LLLTIIEPRMSDTGIYYIRVSLAGRNKSDIFRTSVFV 158 (352)
T ss_pred eEEEeCCCCcccCeeEEEEEEeCCCccCceEEEEEEE
Confidence 3688899999999999999887666555555555543
No 223
>PF13220 DUF4028: Protein of unknown function (DUF4028)
Probab=54.77 E-value=15 Score=15.73 Aligned_cols=16 Identities=13% Similarity=0.181 Sum_probs=11.9
Q ss_pred CCCEEEEEEEEcCCCc
Q psy9150 68 MDAGIYECYADNMYNV 83 (97)
Q Consensus 68 ~~~g~y~c~~~~~~g~ 83 (97)
..+..+.|.+.|..|.
T Consensus 8 dssnsflctvqnkng~ 23 (65)
T PF13220_consen 8 DSSNSFLCTVQNKNGD 23 (65)
T ss_pred cCCCceEEEEecccHh
Confidence 3456789999988774
No 224
>PHA03240 envelope glycoprotein M; Provisional
Probab=54.30 E-value=29 Score=19.73 Aligned_cols=20 Identities=30% Similarity=0.228 Sum_probs=16.3
Q ss_pred EEEEEEccCCCCCCEEEEEE
Q psy9150 57 KSKIEIDPATQMDAGIYECY 76 (97)
Q Consensus 57 ~~~l~i~~~~~~~~g~y~c~ 76 (97)
+++|.|..+..+|.|.|.-.
T Consensus 104 NstL~i~~vn~sd~~nYcr~ 123 (258)
T PHA03240 104 NSTLIIAHLNLSDAGEYCRK 123 (258)
T ss_pred cceEEEEEEeecCcchhhhc
Confidence 56889999999999998643
No 225
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=50.71 E-value=29 Score=16.69 Aligned_cols=77 Identities=8% Similarity=-0.011 Sum_probs=42.8
Q ss_pred ceeeEEEcCCeEEEEEEecccCCCeeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150 4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV 83 (97)
Q Consensus 4 ~~~~~~~~g~~~~l~c~~~~~~~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~ 83 (97)
+..+.+..|+.+.+-|...-..+..+.|.-.-..... ........+.+.+++. | ....|.+.....+
T Consensus 10 P~~~vV~~G~Sv~VNCStsC~~p~~~GLET~L~k~~~-----------~~g~~W~~f~LsnV~~-d-s~~~C~~~C~g~Q 76 (91)
T PF03921_consen 10 PEEPVVPPGGSVWVNCSTSCPQPEKIGLETSLSKTEL-----------DSGPQWKAFQLSNVTE-D-SSPLCFFNCSGEQ 76 (91)
T ss_dssp SSEEEEETTEEEEEEEEESSSS-SEEEEESSSEEEEE-----------EEETTEEEEEEEEE-S-C-EEEEEEEEETTEE
T ss_pred CCccEECCCCCEEEEEcCCCCCCCcceEEEecCCccc-----------CCCCcEEEEEEEcccc-C-CeEEEEEEcCCeE
Confidence 4577889999999999985433334555432111110 0011133566777775 3 4677988876444
Q ss_pred eeEEEEEEEE
Q psy9150 84 DTRTFKTDFS 93 (97)
Q Consensus 84 ~~~~~~~~~~ 93 (97)
......+.+-
T Consensus 77 ~~~~~~ItVY 86 (91)
T PF03921_consen 77 SSASANITVY 86 (91)
T ss_dssp EEEEEEEEEE
T ss_pred EEeEEeeEEe
Confidence 4555555543
No 226
>KOG0613|consensus
Probab=49.49 E-value=18 Score=25.88 Aligned_cols=78 Identities=8% Similarity=-0.092 Sum_probs=51.3
Q ss_pred eeeEEEcCCeEEEEEEecccCCCe-eEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCc
Q psy9150 5 FDYEYVLGHKIVFICMAKGKPRPH-ITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNV 83 (97)
Q Consensus 5 ~~~~~~~g~~~~l~c~~~~~~~p~-i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~ 83 (97)
..+.+..+..+.+.|...+.+.|. +.|+.............. ............+..+...+.+.+.|.+.|..|.
T Consensus 342 ~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~---~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~ 418 (1205)
T KOG0613|consen 342 LSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALP---CPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGT 418 (1205)
T ss_pred ceeccccCcceeecccccCCcCCchheeecccccccccccccc---cccccccCcchhhhhcCcccccccccceeccCCc
Confidence 455666777888999998988887 888875544332221111 0111222345667778888889999999998886
Q ss_pred ee
Q psy9150 84 DT 85 (97)
Q Consensus 84 ~~ 85 (97)
..
T Consensus 419 ~~ 420 (1205)
T KOG0613|consen 419 EQ 420 (1205)
T ss_pred cc
Confidence 54
No 227
>PHA03112 IL-18 binding protein; Provisional
Probab=40.44 E-value=58 Score=17.19 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=19.4
Q ss_pred EEEcCCeEEEEEEeccc-C-CCeeEEEeCC
Q psy9150 8 EYVLGHKIVFICMAKGK-P-RPHITWFKDG 35 (97)
Q Consensus 8 ~~~~g~~~~l~c~~~~~-~-~p~i~w~~~~ 35 (97)
....++.+.+.|.+.++ | ...+-|...+
T Consensus 34 p~k~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 34 PTKETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred ccCCCCEEEEEEECccCCCCceEEEEEcCC
Confidence 34567889999998754 3 3458898644
No 228
>PHA03286 envelope glycoprotein E; Provisional
Probab=30.99 E-value=1.5e+02 Score=19.22 Aligned_cols=36 Identities=22% Similarity=0.229 Sum_probs=27.0
Q ss_pred EEEEEEccCCCCCCEEEEEEEEcCCCce-eEEEEEEE
Q psy9150 57 KSKIEIDPATQMDAGIYECYADNMYNVD-TRTFKTDF 92 (97)
Q Consensus 57 ~~~l~i~~~~~~~~g~y~c~~~~~~g~~-~~~~~~~~ 92 (97)
.+.+.|.++..+..|.|+-...|..+.. ..-+.|.+
T Consensus 126 ~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV 162 (492)
T PHA03286 126 GKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWV 162 (492)
T ss_pred CCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEE
Confidence 3568999999999999999988876654 33444444
No 229
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=29.51 E-value=64 Score=14.38 Aligned_cols=21 Identities=29% Similarity=0.793 Sum_probs=12.3
Q ss_pred EEcCCeEEEEEEecccCCCeeEEEe
Q psy9150 9 YVLGHKIVFICMAKGKPRPHITWFK 33 (97)
Q Consensus 9 ~~~g~~~~l~c~~~~~~~p~i~w~~ 33 (97)
+..|++..| .|.+...+.|++
T Consensus 2 v~~G~N~TL----~Gp~~~~V~Wy~ 22 (63)
T PF02440_consen 2 VTVGSNVTL----VGPPDGPVTWYK 22 (63)
T ss_pred EeEcCcEEE----eCCCCCceEEEE
Confidence 345666555 343445689984
No 230
>PF15096 G6B: G6B family
Probab=27.43 E-value=65 Score=17.99 Aligned_cols=18 Identities=17% Similarity=0.353 Sum_probs=13.1
Q ss_pred eEEEcCCeEEEEEEeccc
Q psy9150 7 YEYVLGHKIVFICMAKGK 24 (97)
Q Consensus 7 ~~~~~g~~~~l~c~~~~~ 24 (97)
+.-..|+.+.+.|.....
T Consensus 6 LeGrPGDRVnlSCvGVs~ 23 (224)
T PF15096_consen 6 LEGRPGDRVNLSCVGVSH 23 (224)
T ss_pred ccCCCCCeeeeeeccCCC
Confidence 344578999999986543
No 231
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=27.13 E-value=56 Score=14.81 Aligned_cols=21 Identities=24% Similarity=0.706 Sum_probs=13.3
Q ss_pred EEEEecccCCCeeEEEeCCEEcc
Q psy9150 17 FICMAKGKPRPHITWFKDGVELY 39 (97)
Q Consensus 17 l~c~~~~~~~p~i~w~~~~~~~~ 39 (97)
+.|.... .-.+.||.++..+.
T Consensus 3 ltC~s~~--sLPiswYcN~TRLl 23 (71)
T PF11049_consen 3 LTCPSNA--SLPISWYCNGTRLL 23 (71)
T ss_pred eecCCCC--CCcccEEECCceee
Confidence 4565533 33478999887654
No 232
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=26.05 E-value=78 Score=20.18 Aligned_cols=22 Identities=14% Similarity=0.241 Sum_probs=15.7
Q ss_pred EEEEccCCCCCCEEEEEEEEcC
Q psy9150 59 KIEIDPATQMDAGIYECYADNM 80 (97)
Q Consensus 59 ~l~i~~~~~~~~g~y~c~~~~~ 80 (97)
.|.+.++...++|.|.|.+...
T Consensus 270 ~l~f~~a~~~~sGLYv~V~~~n 291 (439)
T PF02480_consen 270 DLQFTNAPESASGLYVFVVYYN 291 (439)
T ss_dssp SEEESS--GGG-EEEEEEEEET
T ss_pred ceEecCCCcccCceEEEEEEEC
Confidence 4788899999999999987653
No 233
>PF10572 UPF0556: Uncharacterised protein family UPF0556; InterPro: IPR018887 This family of proteins has no known function.
Probab=25.13 E-value=1.3e+02 Score=16.34 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=13.7
Q ss_pred CCCCCEEEEEEEEcCCCc
Q psy9150 66 TQMDAGIYECYADNMYNV 83 (97)
Q Consensus 66 ~~~~~g~y~c~~~~~~g~ 83 (97)
...|.+.|.|.+..+.|.
T Consensus 68 ~s~d~~~~sC~I~RPqgk 85 (158)
T PF10572_consen 68 LSDDNGHYSCIIWRPQGK 85 (158)
T ss_pred ecCCCCceEEEEECCCCC
Confidence 345778899998888764
No 234
>PF03426 CBM_15: Carbohydrate binding domain (family 15); InterPro: IPR005088 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM15 from CAZY which binds to xylan and xylooligosaccharides [].; PDB: 1US3_A 1GNY_A 1US2_A.
Probab=24.30 E-value=57 Score=16.71 Aligned_cols=19 Identities=21% Similarity=0.414 Sum_probs=6.1
Q ss_pred CEEEEEEEEcCCCceeEEE
Q psy9150 70 AGIYECYADNMYNVDTRTF 88 (97)
Q Consensus 70 ~g~y~c~~~~~~g~~~~~~ 88 (97)
.|.|.|.+.+..-......
T Consensus 81 ~gew~c~a~~~~~ta~~d~ 99 (163)
T PF03426_consen 81 PGEWDCWAGNSEFTADEDA 99 (163)
T ss_dssp EEE----B-GGG--SSS-E
T ss_pred CCccceecccceeccCCCc
Confidence 4778888776654443333
No 235
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=24.17 E-value=84 Score=13.96 Aligned_cols=57 Identities=9% Similarity=0.067 Sum_probs=31.8
Q ss_pred eeEEEeCCEEccccceeeEEEEEecCceEEEEEEEccCCCCCCEEEEEEEEcCCCceeEEEEEE
Q psy9150 28 HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTD 91 (97)
Q Consensus 28 ~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~~~~~~g~~~~~~~~~ 91 (97)
...|++++....... ..+ .... -.+..-..+.+...|.+...+....|.........
T Consensus 8 ~H~W~~~g~~~~~i~-l~i-----~g~r-~Rt~S~k~~~~~~~G~WrV~V~~~~G~~l~~~~F~ 64 (66)
T PF11141_consen 8 YHRWYKNGKLVARIP-LPI-----SGGR-WRTWSSKQNFPDQPGDWRVEVVDEDGQVLGSLRFS 64 (66)
T ss_pred EEEEEECCEEEEEEE-Eec-----cCCC-EEEEEEeecCCCCCcCEEEEEEcCCCCEEEEEEEE
Confidence 356999887765321 111 1111 22223333444678999999988888765544433
Done!