RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9150
(97 letters)
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 77.1 bits (190), Expect = 2e-20
Identities = 20/83 (24%), Positives = 29/83 (34%)
Query: 10 VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
H KG P+P + WF +G L Y+ +++D T M+
Sbjct: 14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMN 73
Query: 70 AGIYECYADNMYNVDTRTFKTDF 92
G Y A N Y D + F
Sbjct: 74 NGDYTLIAKNEYGKDEKQISAHF 96
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens}
SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 71.5 bits (175), Expect = 7e-18
Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 2/87 (2%)
Query: 8 EYVLGHKIVFICMAKGKPRPHITWFKDGVELY--THMYVNLHEWHYGTDRIKSKIEIDPA 65
V H G+P P + W +G L + ++ E + ++
Sbjct: 11 TAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQP 70
Query: 66 TQMDAGIYECYADNMYNVDTRTFKTDF 92
T ++ G Y A N + + + F
Sbjct: 71 THVNNGNYTLLAANPFGQASASIMAAF 97
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor,
receptor tyrosine kinase, 3D-domain swapping,
transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 69.8 bits (171), Expect = 3e-17
Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 1/83 (1%)
Query: 10 VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
L + + +G P P + W +G L +++ + + + + + T +
Sbjct: 18 ELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEY-YQEGEISEGCLLFNKPTHYN 76
Query: 70 AGIYECYADNMYNVDTRTFKTDF 92
G Y A N +T F
Sbjct: 77 NGNYTLIAKNPLGTANQTINGHF 99
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 68.6 bits (168), Expect = 8e-17
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
G ++ + +GKPRP + W K G L T H T + + A + D+G
Sbjct: 39 GEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRV------HVRTSDFDTVFFVRQAARSDSG 92
Query: 72 IYECYADNMYNVDTRTFK 89
YE DT T +
Sbjct: 93 EYELSVQIENMKDTATIR 110
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 71.9 bits (176), Expect = 2e-16
Identities = 18/82 (21%), Positives = 34/82 (41%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
+ G + C+A G P P I+W DG ++ + + ++ + S + I
Sbjct: 438 EETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSV 497
Query: 66 TQMDAGIYECYADNMYNVDTRT 87
D G+Y+C A + V +
Sbjct: 498 HANDGGLYKCIAKSKVGVAEHS 519
Score = 63.4 bits (154), Expect = 2e-13
Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 2/82 (2%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
D + G C A G P+P +TW K + + + + + +D
Sbjct: 723 DKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVE--EGTLHVDNI 780
Query: 66 TQMDAGIYECYADNMYNVDTRT 87
+ + G Y C A N
Sbjct: 781 QKTNEGYYLCEAINGIGSGLSA 802
Score = 61.5 bits (149), Expect = 7e-13
Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
+ +C A+G P P W+K V L++ + I A D+G
Sbjct: 263 SSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGT---LIIKDAVVEDSG 319
Query: 72 IYECYADN 79
Y C +N
Sbjct: 320 KYLCVVNN 327
Score = 61.1 bits (148), Expect = 1e-12
Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 5/83 (6%)
Query: 6 DYEYVLGHKIVFICMAKGKPRP-HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDP 64
+ +G + C G P +I W DG + + + R S + I+
Sbjct: 628 EGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSR----VGRRGSVLTIEA 683
Query: 65 ATQMDAGIYECYADNMYNVDTRT 87
AG + C+A N+ T
Sbjct: 684 VEASHAGNFTCHARNLAGHQQFT 706
Score = 60.3 bits (146), Expect = 2e-12
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 15/76 (19%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
G VF C G P ++W KDG + +S + I+
Sbjct: 352 TQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS---------------ESVLRIESV 396
Query: 66 TQMDAGIYECYADNMY 81
+ D G+Y+C+ N
Sbjct: 397 KKEDKGMYQCFVRNDR 412
Score = 60.3 bits (146), Expect = 2e-12
Identities = 14/68 (20%), Positives = 19/68 (27%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
C A G P P I W + + G D ++ A
Sbjct: 54 STGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQ 113
Query: 72 IYECYADN 79
+Y C A N
Sbjct: 114 VYACLARN 121
Score = 56.5 bits (136), Expect = 4e-11
Identities = 18/81 (22%), Positives = 25/81 (30%), Gaps = 7/81 (8%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
V G ++ C G P I W +D L + + GT I+ +
Sbjct: 535 KKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFP--NGTLIIE-----NVE 587
Query: 66 TQMDAGIYECYADNMYNVDTR 86
D Y C A N R
Sbjct: 588 RNSDQATYTCVAKNQEGYSAR 608
Score = 45.7 bits (108), Expect = 3e-07
Identities = 14/83 (16%), Positives = 25/83 (30%), Gaps = 7/83 (8%)
Query: 12 GHKIVFICMAK---GKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQM 68
G+ V C+ ++W D E Y ++ ++ I
Sbjct: 153 GNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPS---GELHIREVGPE 209
Query: 69 DA-GIYECYADNMYNVDTRTFKT 90
D Y+C + +TR T
Sbjct: 210 DGYKSYQCRTKHRLTGETRLSAT 232
Score = 27.2 bits (60), Expect = 0.84
Identities = 2/30 (6%), Positives = 5/30 (16%)
Query: 61 EIDPATQMDAGIYECYADNMYNVDTRTFKT 90
+ ++ A T
Sbjct: 2 NMPNERLKWLMLFAAVALIACGSQTLAANP 31
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 68.6 bits (168), Expect = 4e-16
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 10 VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
+ G K V C G P+P ++W K L + + + E G+ + I + D
Sbjct: 113 IEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLE--SGS------LRIHNVQKED 164
Query: 70 AGIYECYADN 79
AG Y C A N
Sbjct: 165 AGQYRCVAKN 174
Score = 67.4 bits (165), Expect = 1e-15
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 6/76 (7%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
+ ++ F+C + P+P I+W ++ + + L + Y + I
Sbjct: 16 TVDALVEEVATFMCAVESYPQPEISWTRNKILI------KLFDTRYSIRENGQLLTILSV 69
Query: 66 TQMDAGIYECYADNMY 81
D GIY C A+N
Sbjct: 70 EDSDDGIYCCTANNGV 85
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 68.6 bits (168), Expect = 4e-16
Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 4/84 (4%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
+ G + GKP P ITW K + + + + T S + +
Sbjct: 113 AVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIV----TRSFTSLVFPNGV 168
Query: 66 TQMDAGIYECYADNMYNVDTRTFK 89
+ DAG Y A N + +D +T +
Sbjct: 169 ERKDAGFYVVCAKNRFGIDQKTVE 192
Score = 64.7 bits (158), Expect = 1e-14
Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 3/76 (3%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
+ +C G P+P + W++ G E+ L ++ I
Sbjct: 13 NLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIAD---GLKYRIQEFKGGYHQLIIASV 69
Query: 66 TQMDAGIYECYADNMY 81
T DA +Y+ A N
Sbjct: 70 TDDDATVYQVRATNQG 85
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family,
cellular adhesion, ligand-independent DIME mutational
analysis, transferase; HET: EPE; 1.96A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.4
Length = 182
Score = 68.3 bits (167), Expect = 5e-16
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYT--HMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
G + C +G P I W KDG + +Y+ + E H+ + + + D
Sbjct: 17 GQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWI-----GFLSLKSVERSD 71
Query: 70 AGIYECYADN 79
AG Y C ++
Sbjct: 72 AGRYWCQVED 81
Score = 53.6 bits (129), Expect = 2e-10
Identities = 14/84 (16%), Positives = 25/84 (29%), Gaps = 16/84 (19%)
Query: 6 DYEYVLGHKIVFICMAKGKPRP-HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDP 64
D C A G P P I W++ ++ S ++
Sbjct: 107 DLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP--------------SPSVLNV 152
Query: 65 ATQMDAGIYECYADNMY-NVDTRT 87
+ ++ C A N+ +RT
Sbjct: 153 TGVTQSTMFSCEAHNLKGLASSRT 176
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 69.4 bits (170), Expect = 7e-16
Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 5/84 (5%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
E + G + C +G P ++W KD EL + + + + I I
Sbjct: 201 PVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMS-----ENFLTSIHILNV 255
Query: 66 TQMDAGIYECYADNMYNVDTRTFK 89
D G Y+C A N T
Sbjct: 256 DSADIGEYQCKASNDVGSYTCVGS 279
Score = 65.1 bits (159), Expect = 2e-14
Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 5/78 (6%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
G F C G ITW KD E+ + + + + T+ DAG
Sbjct: 20 GESGTFKCHVTGTAPIKITWAKDNREI-----RPGGNYKMTLVENTATLTVLKVTKGDAG 74
Query: 72 IYECYADNMYNVDTRTFK 89
Y CYA N+ D+ + +
Sbjct: 75 QYTCYASNVAGKDSCSAQ 92
Score = 62.4 bits (152), Expect = 2e-13
Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 5/68 (7%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
+ C G P + W+KD E+ + + +E+ + D+G
Sbjct: 114 DEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMS-----FVESVAVLEMYNLSVEDSG 168
Query: 72 IYECYADN 79
Y C A N
Sbjct: 169 DYTCEAHN 176
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 68.1 bits (166), Expect = 9e-16
Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Query: 6 DYEYVLGHKIVFICMA-KGKPRPHITWFKDGVELYT--HMYVNLHEWHYGTDRIKSKIEI 62
+G++ V C G P TWFKDG+ + T Y + ++
Sbjct: 116 PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVF 175
Query: 63 DPATQMDAGIYECYADNMY 81
DP + D G Y C A N Y
Sbjct: 176 DPLSASDTGEYSCEARNGY 194
Score = 63.8 bits (155), Expect = 4e-14
Identities = 14/71 (19%), Positives = 22/71 (30%), Gaps = 3/71 (4%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIK---SKIEIDPATQM 68
+ + C G P + W D + + N DR+ + I T+
Sbjct: 19 NNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTRE 78
Query: 69 DAGIYECYADN 79
D G Y C
Sbjct: 79 DTGTYTCMVSE 89
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo
sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 65.5 bits (160), Expect = 1e-15
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
V G + C+ G+P P + W K G +L ++ D + + + A
Sbjct: 22 PVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPA-----DGAEHGLLLTAA 76
Query: 66 TQMDAGIYECYADN 79
DAG+Y C A N
Sbjct: 77 LPTDAGVYVCRARN 90
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 67.4 bits (165), Expect = 1e-15
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
+ G F G P P ++WF+DG + T L ++K+ I
Sbjct: 14 SVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTS---TLPGVQISFSDGRAKLTIPAV 70
Query: 66 TQMDAGIYECYADN 79
T+ ++G Y A N
Sbjct: 71 TKANSGRYSLKATN 84
Score = 64.7 bits (158), Expect = 1e-14
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 5/74 (6%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
G ++ G P P + +++DG E+ + + + + + + I A
Sbjct: 112 SMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQ-----EGDLYSLLIAEA 166
Query: 66 TQMDAGIYECYADN 79
D+G Y A N
Sbjct: 167 YPEDSGTYSVNATN 180
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 65.0 bits (159), Expect = 1e-15
Identities = 19/74 (25%), Positives = 26/74 (35%), Gaps = 8/74 (10%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
D + G V C +G P P ITW +G + ++ I A
Sbjct: 20 DCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVA--------ELHIQDA 71
Query: 66 TQMDAGIYECYADN 79
D G Y C A+N
Sbjct: 72 LPEDHGTYTCLAEN 85
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 65.4 bits (160), Expect = 1e-15
Identities = 15/84 (17%), Positives = 24/84 (28%), Gaps = 5/84 (5%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
D + G + G TW K ++ ++ + G SK+ I A
Sbjct: 16 DQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENG-----SKLTILAA 70
Query: 66 TQMDAGIYECYADNMYNVDTRTFK 89
Q G Y +N
Sbjct: 71 RQEHCGCYTLLVENKLGSRQAQVN 94
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 65.1 bits (159), Expect = 1e-15
Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 9/77 (11%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVEL-YTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
+ C A G P P I+W K+G + E GT ++I D
Sbjct: 23 DGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQE--QGT------LQIKNLRISDT 74
Query: 71 GIYECYADNMYNVDTRT 87
G Y C A + + +
Sbjct: 75 GTYTCVATSSSGETSWS 91
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted
in U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 65.6 bits (160), Expect = 1e-15
Identities = 23/74 (31%), Positives = 28/74 (37%), Gaps = 15/74 (20%)
Query: 10 VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSK----IEIDPA 65
+ V C+A G P P I W KDGV + T RIK ++I A
Sbjct: 21 AVDGTFVLSCVATGSPVPTILWRKDGVLVST-----------QDSRIKQLENGVLQIRYA 69
Query: 66 TQMDAGIYECYADN 79
D G Y C A
Sbjct: 70 KLGDTGRYTCIAST 83
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 64.8 bits (158), Expect = 2e-15
Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 4/76 (5%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
+ + + F C A G P P + W K+G E + ++ + ++
Sbjct: 17 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ----HWSLIMESV 72
Query: 66 TQMDAGIYECYADNMY 81
D G Y C +N Y
Sbjct: 73 VPSDKGNYTCVVENEY 88
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 68.5 bits (167), Expect = 2e-15
Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 4/84 (4%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
+ + F C A G P P I+W K+G E + + + + ++
Sbjct: 132 LLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQ----WSLVMESV 187
Query: 66 TQMDAGIYECYADNMYNVDTRTFK 89
D G Y C +N + +T+
Sbjct: 188 VPSDRGNYTCVVENKFGSIRQTYT 211
Score = 62.3 bits (151), Expect = 3e-13
Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 8/78 (10%)
Query: 10 VLGHKIVFICMAKGKPRPHITWFKDGVELYT--------HMYVNLHEWHYGTDRIKSKIE 61
VLG + F C +PHI W K + ++ V TD+ +
Sbjct: 235 VLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLS 294
Query: 62 IDPATQMDAGIYECYADN 79
+ T DAG Y C A N
Sbjct: 295 LHNVTFEDAGEYTCLAGN 312
Score = 58.5 bits (141), Expect = 8e-12
Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 16/74 (21%)
Query: 12 GHKIVFICMAK-GKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIK---SKIEIDPATQ 67
G + C G P W KDG L ++R+ ++++ A+
Sbjct: 23 GDAVELSCPPPGGGPMGPTVWVKDGTGLVP------------SERVLVGPQRLQVLNASH 70
Query: 68 MDAGIYECYADNMY 81
D+G Y C
Sbjct: 71 EDSGAYSCRQRLTQ 84
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 66.9 bits (163), Expect = 2e-15
Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 6 DYEYVLGHKIVFICMA-KGKPRPHITWFKDGVELYT---HMYVNLHEWHYGTDRIKSKIE 61
+G++ V C G P +WFKDG+ + T + D +
Sbjct: 113 PSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLI 172
Query: 62 IDPATQMDAGIYECYADNMYNVDTRT 87
DP T D+G Y C A N Y R+
Sbjct: 173 FDPVTAFDSGEYYCQAQNGYGTAMRS 198
Score = 60.8 bits (147), Expect = 6e-13
Identities = 16/77 (20%), Positives = 21/77 (27%), Gaps = 3/77 (3%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIK---SKIEI 62
D + I C G P + W + N DR+ S I
Sbjct: 10 DVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITF 69
Query: 63 DPATQMDAGIYECYADN 79
T+ D G Y C
Sbjct: 70 SSVTRKDNGEYTCMVSE 86
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB:
2xy1_A*
Length = 192
Score = 66.8 bits (163), Expect = 2e-15
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 7/84 (8%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
+ G ++ F C A G P P I+WF++G + Y +++ +
Sbjct: 13 NATAERGEEMTFSCRASGSPEPAISWFRNGKLI-------EENEKYILKGSNTELTVRNI 65
Query: 66 TQMDAGIYECYADNMYNVDTRTFK 89
D G Y C A N D +
Sbjct: 66 INSDGGPYVCRATNKAGEDEKQAF 89
Score = 66.4 bits (162), Expect = 3e-15
Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 2/80 (2%)
Query: 10 VLGHKIVFICMAKGKPRPHITWFK--DGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQ 67
++ +C A+G+P P ITW + DG S + I
Sbjct: 107 YENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKL 166
Query: 68 MDAGIYECYADNMYNVDTRT 87
D+G Y+C A + ++
Sbjct: 167 SDSGRYDCEAASRIGGHQKS 186
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 67.2 bits (164), Expect = 2e-15
Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 4/84 (4%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
+ + + F C A G P P + W K+G E + ++ + ++
Sbjct: 28 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI----MESV 83
Query: 66 TQMDAGIYECYADNMYNVDTRTFK 89
D G Y C +N Y T+
Sbjct: 84 VPSDKGNYTCVVENEYGSINHTYH 107
Score = 62.6 bits (152), Expect = 1e-13
Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 6/76 (7%)
Query: 10 VLGHKIVFICMAKGKPRPHITWFKDGVELYTHM------YVNLHEWHYGTDRIKSKIEID 63
V+G + F+C +PHI W K + + Y+ + + + +
Sbjct: 131 VVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALF 190
Query: 64 PATQMDAGIYECYADN 79
T+ DAG Y C N
Sbjct: 191 NVTEADAGEYICKVSN 206
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural
protein, cell membrane, cytoplasm, cytoskeleton,
disease mutation, immunoglobulin domain; NMR {Homo
sapiens}
Length = 100
Score = 64.3 bits (157), Expect = 3e-15
Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 4/74 (5%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
+ G G P P ++W+ +G + + + G + +
Sbjct: 14 NMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGL----HSLIFEVV 69
Query: 66 TQMDAGIYECYADN 79
DAG Y C A N
Sbjct: 70 RASDAGAYACVAKN 83
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 64.3 bits (157), Expect = 3e-15
Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
G + C G+P P +TW G ++++ +H + + I + D G
Sbjct: 20 GKVLTVACAFTGEPTPEVTWSCGGRKIHSQ---EQGRFHIENTDDLTTLIIMDVQKQDGG 76
Query: 72 IYECYADN 79
+Y N
Sbjct: 77 LYTLSLGN 84
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 64.3 bits (157), Expect = 3e-15
Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 5/68 (7%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
G F C G+P P +TW + G L T + + KS EI D G
Sbjct: 29 GESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTT-----TKYKSTFEISSVQASDEG 83
Query: 72 IYECYADN 79
Y +N
Sbjct: 84 NYSVVVEN 91
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 66.3 bits (162), Expect = 3e-15
Identities = 20/74 (27%), Positives = 27/74 (36%), Gaps = 5/74 (6%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
D LG C G+P P I W++ G EL + D + +
Sbjct: 16 DVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSS-----DGRTHTLTVMTE 70
Query: 66 TQMDAGIYECYADN 79
Q D G+Y C A N
Sbjct: 71 EQEDEGVYTCIATN 84
Score = 62.8 bits (153), Expect = 7e-14
Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 4/84 (4%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
Y +G + M G+P P +TWF L + + T+ + +
Sbjct: 112 KYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIEN----TEHYTHLVMKNVQ 167
Query: 66 TQMDAGIYECYADNMYNVDTRTFK 89
+ AG Y+ N++
Sbjct: 168 RKTHAGKYKVQLSNVFGTVDAILD 191
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 63.8 bits (156), Expect = 4e-15
Identities = 21/74 (28%), Positives = 27/74 (36%), Gaps = 5/74 (6%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
D F A G+PRP W KDG + L E D+ +EI
Sbjct: 15 DTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSE-----DKGGFFLEIHKT 69
Query: 66 TQMDAGIYECYADN 79
D+G+Y C N
Sbjct: 70 DTSDSGLYTCTVKN 83
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 68.0 bits (166), Expect = 4e-15
Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Query: 10 VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
G + CM P + +FK+G ++ + + + + + + D
Sbjct: 225 KAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKR---LLFKTTLPED 281
Query: 70 AGIYECYADN 79
G+Y C DN
Sbjct: 282 EGVYTCEVDN 291
Score = 61.9 bits (150), Expect = 6e-13
Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 7/77 (9%)
Query: 6 DYEYVLGHKIVFICMAKGKPRP-HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDP 64
+ + + V C+ +G + +W KDG + G+ +
Sbjct: 15 EVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGS------LVFLR 68
Query: 65 ATQMDAGIYECYADNMY 81
D G Y+C+A+
Sbjct: 69 PQASDEGHYQCFAETPA 85
Score = 59.9 bits (145), Expect = 2e-12
Identities = 15/68 (22%), Positives = 20/68 (29%), Gaps = 10/68 (14%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
G + C G P P++ W + L S + I D G
Sbjct: 324 GQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTD----------SGLVIKGVKNGDKG 373
Query: 72 IYECYADN 79
Y C A N
Sbjct: 374 YYGCRATN 381
Score = 49.5 bits (118), Expect = 1e-08
Identities = 15/84 (17%), Positives = 22/84 (26%), Gaps = 9/84 (10%)
Query: 10 VLGHKIVFICM-AKGKPRPHITWFKDGVELYTHMYVNLHEWHY-----GTDRIKSKIEID 63
+ G C+ P+P ITW K + V + G +
Sbjct: 113 IEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTI---VT 169
Query: 64 PATQMDAGIYECYADNMYNVDTRT 87
D Y C A N +
Sbjct: 170 KEDVSDIYKYVCTAKNAAVDEEVV 193
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 63.6 bits (155), Expect = 4e-15
Identities = 17/74 (22%), Positives = 21/74 (28%), Gaps = 14/74 (18%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
G + C +P P I W KDGV L L +
Sbjct: 19 GGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLI--------------LPEI 64
Query: 66 TQMDAGIYECYADN 79
D G Y C A +
Sbjct: 65 GPQDQGTYSCVATH 78
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 67.9 bits (166), Expect = 5e-15
Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 5 FDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDP 64
E + G + C +G P ++W KD EL + + + + I I
Sbjct: 392 HPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMS-----ENFLTSIHILN 446
Query: 65 ATQMDAGIYECYADNMYNVDTRTF 88
D G Y+C A N DT
Sbjct: 447 VDSADIGEYQCKASNDVGSDTCVG 470
Score = 67.5 bits (165), Expect = 5e-15
Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 5/84 (5%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
+ LG F C G ITW KD E+ + + + +
Sbjct: 206 SVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENT-----ATLTVLKV 260
Query: 66 TQMDAGIYECYADNMYNVDTRTFK 89
T+ DAG Y CYA N+ D+ + +
Sbjct: 261 TKGDAGQYTCYASNVAGKDSCSAQ 284
Score = 63.7 bits (155), Expect = 1e-13
Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 5/82 (6%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
E +G I C G P I W+K+ +L + + + + I+
Sbjct: 14 HVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAP-----AYKMQFKNNVASLVINKV 68
Query: 66 TQMDAGIYECYADNMYNVDTRT 87
D G Y C A+N +
Sbjct: 69 DHSDVGEYTCKAENSVGAVASS 90
Score = 63.3 bits (154), Expect = 2e-13
Identities = 15/84 (17%), Positives = 25/84 (29%), Gaps = 4/84 (4%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
D V+G ++ +G + WFKD E+ + ++ A
Sbjct: 486 DISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVR----ESDNIWISYSENIATLQFSRA 541
Query: 66 TQMDAGIYECYADNMYNVDTRTFK 89
+AG Y C N
Sbjct: 542 EPANAGKYTCQIKNEAGTQECFAT 565
Score = 59.8 bits (145), Expect = 3e-12
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 5/68 (7%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
+ C G P + W+KD E+ ++ + +E+ + D+G
Sbjct: 306 DEHTRYECKIGGSPEIKVLWYKDETEIQES-----SKFRMSFVESVAVLEMYNLSVEDSG 360
Query: 72 IYECYADN 79
Y C A N
Sbjct: 361 DYTCEAHN 368
Score = 57.9 bits (140), Expect = 1e-11
Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 5/78 (6%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
G + F C G ++W+KDG L + H + ++I Q G
Sbjct: 116 GFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNV-----ATLQILQTDQSHVG 170
Query: 72 IYECYADNMYNVDTRTFK 89
Y C A N + + K
Sbjct: 171 QYNCSASNPLGTASSSAK 188
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 64.1 bits (156), Expect = 5e-15
Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHY---GTDRIKSKIEI 62
D G C A+G+P P I W+K G + T G+ +I
Sbjct: 18 DLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFF-LRIVH 76
Query: 63 DPATQMDAGIYECYADN 79
++ D G+Y C A N
Sbjct: 77 GRKSRPDEGVYVCVARN 93
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1,
BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 63.6 bits (155), Expect = 5e-15
Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 16/81 (19%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIK---SKIEIDPATQM 68
G + C + I W +DGV+L ++R + ++E+ +
Sbjct: 18 GDLLQLRCRLRDDV-QSINWLRDGVQLAE------------SNRTRITGEEVEVQDSVPA 64
Query: 69 DAGIYECYADNMYNVDTRTFK 89
D+G+Y C + DT F
Sbjct: 65 DSGLYACVTSSPSGSDTTYFS 85
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 63.5 bits (155), Expect = 6e-15
Identities = 21/74 (28%), Positives = 27/74 (36%), Gaps = 4/74 (5%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
D G C G P P ++W DG + + G + I+P
Sbjct: 18 DLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGV----HSLIIEPV 73
Query: 66 TQMDAGIYECYADN 79
T DAGIY C A N
Sbjct: 74 TSRDAGIYTCIATN 87
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 65.7 bits (160), Expect = 6e-15
Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 4/78 (5%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
G + C G P P ++W K+ L + NL T + I+ + D+G
Sbjct: 132 GKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRT----AYFTINGVSTADSG 187
Query: 72 IYECYADNMYNVDTRTFK 89
Y N Y +T F
Sbjct: 188 KYGLVVKNKYGSETSDFT 205
Score = 52.9 bits (127), Expect = 4e-10
Identities = 11/79 (13%), Positives = 21/79 (26%), Gaps = 6/79 (7%)
Query: 12 GHKIVFIC-MAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
I + + W +G + V G + ++I+ T D
Sbjct: 17 AEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRV-----KTGVTGEQIWLQINEPTPNDK 71
Query: 71 GIYECYADNMYNVDTRTFK 89
G Y + +T
Sbjct: 72 GKYVMELFDGKTGHQKTVD 90
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1 (isoform 2); hydrolase, immunoglobulin domain,
nucleus, protease; 1.15A {Homo sapiens}
Length = 91
Score = 63.1 bits (154), Expect = 6e-15
Identities = 18/74 (24%), Positives = 26/74 (35%), Gaps = 14/74 (18%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
+ + G +V C+A G P PH WFK+ + L T K +
Sbjct: 12 SQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPL--------------THETKKLYMVPYV 57
Query: 66 TQMDAGIYECYADN 79
G Y C+ N
Sbjct: 58 DLEHQGTYWCHVYN 71
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 65.2 bits (159), Expect = 6e-15
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
E +G F C A G+P + G ++ + V + + + ++S++ I A
Sbjct: 11 KVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQK-----EGVRSRLTIYNA 65
Query: 66 TQMDAGIYECYADNMY 81
DAGIY C A +
Sbjct: 66 NIEDAGIYRCQATDAK 81
Score = 62.9 bits (153), Expect = 6e-14
Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 14/78 (17%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIK----SKIE 61
E+ G +C P P ++W E+ T +R + ++
Sbjct: 105 PQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTI----------SDNRFAMLANNNLQ 154
Query: 62 IDPATQMDAGIYECYADN 79
I + D GIY C
Sbjct: 155 ILNINKSDEGIYRCEGRV 172
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 66.9 bits (163), Expect = 7e-15
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
G + C G P P ++W K+ L + + NL T + I+ + D+G
Sbjct: 237 GKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRT----AYFTINGVSTADSG 292
Query: 72 IYECYADNMYNVDTRTFK 89
Y N Y +T F
Sbjct: 293 KYGLVVKNKYGSETSDFT 310
Score = 56.5 bits (136), Expect = 4e-11
Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 18/92 (19%)
Query: 4 HFDYEYVLGHKIVFICMAKG-KPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIK----- 57
+ +E ++ C K HI W+KD E+ ++
Sbjct: 13 YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISV------------DEKHDFKDGI 60
Query: 58 SKIEIDPATQMDAGIYECYADNMYNVDTRTFK 89
+ I ++ DAGIYE + D K
Sbjct: 61 CTLLITEFSKKDAGIYEVILKDDRGKDKSRLK 92
Score = 52.6 bits (126), Expect = 1e-09
Identities = 10/74 (13%), Positives = 22/74 (29%), Gaps = 5/74 (6%)
Query: 16 VFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYEC 75
++ + + W +G + V G + ++I+ T D G Y
Sbjct: 127 LYSFVTYYVEDLKVNWSHNGSAIRYSDRV-----KTGVTGEQIWLQINEPTPNDKGKYVM 181
Query: 76 YADNMYNVDTRTFK 89
+ +T
Sbjct: 182 ELFDGKTGHQKTVD 195
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 63.1 bits (154), Expect = 7e-15
Identities = 14/84 (16%), Positives = 22/84 (26%), Gaps = 5/84 (5%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
+ G G P P TW + + + I A
Sbjct: 11 KIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVD-----AKSSTTSIFFPSA 65
Query: 66 TQMDAGIYECYADNMYNVDTRTFK 89
+ D+G Y+ N D F+
Sbjct: 66 KRADSGNYKLKVKNELGEDEAIFE 89
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 67.1 bits (163), Expect = 8e-15
Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 7/84 (8%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
+ +G I C A G P P I WFKD L + L + + + I
Sbjct: 675 NQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGN-------RNLTIRRV 727
Query: 66 TQMDAGIYECYADNMYNVDTRTFK 89
+ D G+Y C A ++
Sbjct: 728 RKEDEGLYTCQACSVLGCAKVEAF 751
Score = 65.2 bits (158), Expect = 4e-14
Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 10/83 (12%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
E +G ++ G P P I W+K+G+ L ++ + + + I
Sbjct: 339 LVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTI----------KAGHVLTIMEV 388
Query: 66 TQMDAGIYECYADNMYNVDTRTF 88
++ D G Y N + + ++
Sbjct: 389 SERDTGNYTVILTNPISKEKQSH 411
Score = 59.4 bits (143), Expect = 5e-12
Identities = 14/104 (13%), Positives = 29/104 (27%), Gaps = 15/104 (14%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVEL---------------YTHMYVNLHEWH 50
D + + C A ++TW+K G + ++
Sbjct: 558 DMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMF 617
Query: 51 YGTDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFSI 94
+ +E+ A+ D G Y C A + ++
Sbjct: 618 SNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTV 661
Score = 54.0 bits (129), Expect = 3e-10
Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 5/83 (6%)
Query: 12 GHKIVFICMAKGKPRPHI--TWFKDGVELYTHMYVNLHEWHYGTDRIK---SKIEIDPAT 66
G K+V C A+ + I W + VN +K S + ID T
Sbjct: 239 GEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVT 298
Query: 67 QMDAGIYECYADNMYNVDTRTFK 89
+ D G+Y C A + +
Sbjct: 299 RSDQGLYTCAASSGLMTKKNSTF 321
Score = 47.1 bits (111), Expect = 9e-08
Identities = 19/111 (17%), Positives = 27/111 (24%), Gaps = 29/111 (26%)
Query: 8 EYVLGHKIVFICMAKGKPRP-HITWFKDGVEL--------------YTHMYVNLHEWHYG 52
Y G C P P HI W+ E Y E G
Sbjct: 434 SYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQG 493
Query: 53 TDRI--------------KSKIEIDPATQMDAGIYECYADNMYNVDTRTFK 89
++I K+ + + +Y+C A N R
Sbjct: 494 GNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVIS 544
Score = 45.9 bits (108), Expect = 3e-07
Identities = 9/68 (13%), Positives = 17/68 (25%), Gaps = 6/68 (8%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
+ C +G+ W + + V + I D G
Sbjct: 46 NTTLQITC--RGQRDLDWLWPNNQSGSEQRVEVTECS----DGLFCKTLTIPKVIGNDTG 99
Query: 72 IYECYADN 79
Y+C+
Sbjct: 100 AYKCFYRE 107
Score = 37.0 bits (85), Expect = 3e-04
Identities = 8/79 (10%), Positives = 16/79 (20%), Gaps = 10/79 (12%)
Query: 12 GHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
+V C+ + + + ++ K I
Sbjct: 143 NKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDS--------KKGFTIPSYMISY 194
Query: 70 AGIYECYADNMYNVDTRTF 88
AG+ C A
Sbjct: 195 AGMVFCEAKINDESYQSIM 213
Score = 25.5 bits (55), Expect = 3.8
Identities = 2/28 (7%), Positives = 8/28 (28%)
Query: 62 IDPATQMDAGIYECYADNMYNVDTRTFK 89
+ + ++ C +V +
Sbjct: 1 MQSKVLLAVALWLCVETRAASVGLPSVS 28
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 66.8 bits (163), Expect = 9e-15
Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 8/82 (9%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
+ I F C GKP P + W K+G + Y + S + I
Sbjct: 321 NLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVG--------GSNLRILGV 372
Query: 66 TQMDAGIYECYADNMYNVDTRT 87
+ D G Y+C A+N +
Sbjct: 373 VKSDEGFYQCVAENEAGNAQSS 394
Score = 64.9 bits (158), Expect = 5e-14
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 6 DYEYVLGHKIVFICMAKG-KPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDP 64
D + G ++ C A+ + P I W KDG+ L M + G+ I I
Sbjct: 30 DAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLI-QNILHSR 88
Query: 65 ATQMDAGIYECYADN 79
+ D G+Y+C A
Sbjct: 89 HHKPDEGLYQCEASL 103
Score = 64.9 bits (158), Expect = 5e-14
Identities = 16/82 (19%), Positives = 25/82 (30%), Gaps = 7/82 (8%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
+ + G V C G P P TW + + L Y + + I
Sbjct: 230 NVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVI------QLRSKKYSLLGGSN-LLISNV 282
Query: 66 TQMDAGIYECYADNMYNVDTRT 87
T D+G Y C + +
Sbjct: 283 TDDDSGTYTCVVTYKNENISAS 304
Score = 61.4 bits (149), Expect = 7e-13
Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 13/79 (16%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKS----KIE 61
+G ++ C G P P I W K+ +L G R+ ++
Sbjct: 130 SITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIP---------GDSRVVVLPSGALQ 180
Query: 62 IDPATQMDAGIYECYADNM 80
I D+G+Y C A N
Sbjct: 181 ISRLQPGDSGVYRCSARNP 199
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 65.7 bits (160), Expect = 1e-14
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 4/84 (4%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
+ + F C A G P P I+W K+G E + + + + + ++
Sbjct: 24 LLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQ----QWSLVMESV 79
Query: 66 TQMDAGIYECYADNMYNVDTRTFK 89
D G Y C +N + +T+
Sbjct: 80 VPSDRGNYTCVVENKFGSIRQTYT 103
Score = 60.3 bits (146), Expect = 1e-12
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Query: 10 VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVN-------LHEWHYGTDRIKSKIEI 62
VLG + F C +PHI W K + + + L W + ++ +
Sbjct: 127 VLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRL 186
Query: 63 DPATQMDAGIYECYADN 79
++ D G Y C A N
Sbjct: 187 ANVSERDGGEYLCRATN 203
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 64.8 bits (158), Expect = 1e-14
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 10 VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
G ++ F C A G P P I+WF++G + + L +++ + D
Sbjct: 111 ERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKG-------SNTELTVRNIINSD 163
Query: 70 AGIYECYADN 79
G Y C A N
Sbjct: 164 GGPYVCRATN 173
Score = 64.0 bits (156), Expect = 2e-14
Identities = 14/76 (18%), Positives = 22/76 (28%), Gaps = 6/76 (7%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
E+ G +C P P ++W E+ T ++I
Sbjct: 11 PQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN------LQILNI 64
Query: 66 TQMDAGIYECYADNMY 81
+ D GIY C
Sbjct: 65 NKSDEGIYRCEGRVEA 80
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 66.4 bits (162), Expect = 1e-14
Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 13/80 (16%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIK----SKIE 61
+C A G P P ITWFKD + + + RIK ++
Sbjct: 117 LKVVERTRTATMLCAASGNPDPEITWFKDFLPV---------DPSASNGRIKQLRSGALQ 167
Query: 62 IDPATQMDAGIYECYADNMY 81
I+ + + D G YEC A N
Sbjct: 168 IESSEETDQGKYECVATNSA 187
Score = 63.3 bits (154), Expect = 1e-13
Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 11/82 (13%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
+E + G + C+A G P P++ W + +L + G + ++
Sbjct: 214 SHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDM-----PVGRNVLEL------T 262
Query: 66 TQMDAGIYECYADNMYNVDTRT 87
D+ Y C A + V
Sbjct: 263 DVKDSANYTCVAMSSLGVIEAV 284
Score = 63.3 bits (154), Expect = 1e-13
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYT--HMYVNLHEWHYGTDRIKSKIEID 63
D V G F+C A G P+P +TW K G ++ + + E RI+
Sbjct: 15 DQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPL---- 70
Query: 64 PATQMDAGIYECYADN 79
T D +YEC A N
Sbjct: 71 -RTPRDENVYECVAQN 85
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 65.2 bits (159), Expect = 1e-14
Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
+C A G P P ITWFKD + + T N ++I+ +
Sbjct: 117 LKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTS--NNNGRIKQLRSESIGALQIEQS 174
Query: 66 TQMDAGIYECYADNM 80
+ D G YEC A N
Sbjct: 175 EESDQGKYECVATNS 189
Score = 60.2 bits (146), Expect = 7e-13
Identities = 25/76 (32%), Positives = 29/76 (38%), Gaps = 7/76 (9%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYT--HMYVNLHEWHYGTDRIKSKIEID 63
D V G FIC A G PRP I W K G ++ + + RI
Sbjct: 15 DQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRI-----QP 69
Query: 64 PATQMDAGIYECYADN 79
T D IYEC A N
Sbjct: 70 LRTPRDEAIYECVASN 85
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 63.2 bits (154), Expect = 1e-14
Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 13/79 (16%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVEL-----YTHMYVNLHEWHYGTDRIKSKI 60
+ + G + C P P + W ++ + +Y + +
Sbjct: 24 SKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRV--------TL 75
Query: 61 EIDPATQMDAGIYECYADN 79
I + DAG Y A N
Sbjct: 76 LIKDVNKKDAGWYTVSAVN 94
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 64.9 bits (158), Expect = 2e-14
Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 14/72 (19%)
Query: 10 VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
+ G +V C+A G P PH WFK+ + L T K +
Sbjct: 131 MPGSTLVLQCVAVGSPIPHYQWFKNELPL--------------THETKKLYMVPYVDLEH 176
Query: 70 AGIYECYADNMY 81
G Y C+ N
Sbjct: 177 QGTYWCHVYNDR 188
Score = 62.6 bits (152), Expect = 1e-13
Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 14/68 (20%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
G + C A G P WFK E+ G S++ + DAG
Sbjct: 33 GQFVKLCCRATGHPFVQYQWFKMNKEI-----------PNGNT---SELIFNAVHVKDAG 78
Query: 72 IYECYADN 79
Y C +N
Sbjct: 79 FYVCRVNN 86
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic
adhesion, arterial smooth muscle cells; 0.96A {Homo
sapiens}
Length = 99
Score = 61.9 bits (151), Expect = 2e-14
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
D G ++ +G+P+P ++W ++ + E G ++ I A
Sbjct: 14 DQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGL----CRLRILAA 69
Query: 66 TQMDAGIYECYADN 79
+ DAG Y C A N
Sbjct: 70 ERGDAGFYTCKAVN 83
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 61.7 bits (150), Expect = 2e-14
Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 16/86 (18%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIK---SKIEI 62
G + C + I W +DGV+L ++R + ++E+
Sbjct: 18 SLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVE------------SNRTRITGEEVEV 64
Query: 63 DPATQMDAGIYECYADNMYNVDTRTF 88
+ D+G+Y C + DT F
Sbjct: 65 RDSIPADSGLYACVTSSPSGSDTTYF 90
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 64.5 bits (157), Expect = 2e-14
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
G+++ C P I+WF+DG L + Y N+ ++ + S +E+ P
Sbjct: 27 AVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSA---SYLEVTPD 83
Query: 66 TQMDAGIYECYADNMYNVDTRTFK 89
++ D G Y C A N ++ F
Sbjct: 84 SENDFGNYNCTAVNRIGQESLEFI 107
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 65.6 bits (160), Expect = 2e-14
Identities = 23/84 (27%), Positives = 31/84 (36%), Gaps = 3/84 (3%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
Y G+ I C K P I W +D + L NL + G K +EI P
Sbjct: 109 IYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGR---KMILEIAPT 165
Query: 66 TQMDAGIYECYADNMYNVDTRTFK 89
+ D G Y C A N + +
Sbjct: 166 SDNDFGRYNCTATNHIGTRFQEYI 189
Score = 64.8 bits (158), Expect = 5e-14
Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 2/80 (2%)
Query: 10 VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYG--TDRIKSKIEIDPATQ 67
++ +C A+G+P P ITW + + S + I
Sbjct: 13 YENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKL 72
Query: 68 MDAGIYECYADNMYNVDTRT 87
D+G Y+C A + ++
Sbjct: 73 SDSGRYDCEAASRIGGHQKS 92
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 65.2 bits (159), Expect = 3e-14
Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 7/84 (8%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
+ G ++ F C A G P P I+WF++G + + L +++ +
Sbjct: 203 NATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKG-------SNTELTVRNI 255
Query: 66 TQMDAGIYECYADNMYNVDTRTFK 89
D G Y C A N D +
Sbjct: 256 INSDGGPYVCRATNKAGEDEKQAF 279
Score = 63.3 bits (154), Expect = 1e-13
Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 14/80 (17%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIK----SKIE 61
E+ G +C P P ++W E+ T +R + ++
Sbjct: 107 PQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTI----------SDNRFAMLANNNLQ 156
Query: 62 IDPATQMDAGIYECYADNMY 81
I + D GIY C
Sbjct: 157 ILNINKSDEGIYRCEGRVEA 176
Score = 54.8 bits (132), Expect = 1e-10
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
G F C A G+P + G ++ + V + + + ++S++ I A DAG
Sbjct: 19 GESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQK-----EGVRSRLTIYNANIEDAG 73
Query: 72 IYECYADNM 80
IY C A +
Sbjct: 74 IYRCQATDA 82
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 64.1 bits (156), Expect = 3e-14
Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 8/81 (9%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHY-----GTDRIKSKI 60
D G C A+G+P P I W+K G + + H G+ +I
Sbjct: 18 DLIVSKGEPATLNCKAEGRPTPTIEWYKGGERV--ETDKDDPRSHRMLLPSGSLFF-LRI 74
Query: 61 EIDPATQMDAGIYECYADNMY 81
++ D G+Y C A N
Sbjct: 75 VHGRKSRPDEGVYVCVARNYL 95
Score = 60.2 bits (146), Expect = 7e-13
Identities = 21/73 (28%), Positives = 26/73 (35%), Gaps = 9/73 (12%)
Query: 10 VLGHKIVFICMA-KGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQM 68
+G V C +G P P I+W KDG L K+ I +
Sbjct: 124 AVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIR--------GGKLMITYTRKS 175
Query: 69 DAGIYECYADNMY 81
DAG Y C NM
Sbjct: 176 DAGKYVCVGTNMV 188
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 63.8 bits (155), Expect = 3e-14
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 9/74 (12%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
D ++G + C A G P P I W K + + ++ + ++I
Sbjct: 122 DVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSG---------AVLKIFNI 172
Query: 66 TQMDAGIYECYADN 79
D GIYEC A+N
Sbjct: 173 QLEDEGIYECEAEN 186
Score = 44.1 bits (104), Expect = 7e-07
Identities = 10/72 (13%), Positives = 23/72 (31%), Gaps = 7/72 (9%)
Query: 12 GHKIVFICMA-KGKPRP-HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
G +V +C P W + ++ + + + + + + I D
Sbjct: 23 GKGMVLLCDPPYHFPDDLSYRWLLNEFPVF----ITMDKRRFVSQT-NGNLYIANVEASD 77
Query: 70 AGIYECYADNMY 81
G Y C+ +
Sbjct: 78 KGNYSCFVSSPS 89
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 61.6 bits (150), Expect = 4e-14
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
Y+ G + F C G P+P I WFKDG ++ + + D S + +
Sbjct: 17 HYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKS--DHYTIQRDLDGTCS-LHTTAS 73
Query: 66 TQMDAGIYECYADN 79
T D G Y A N
Sbjct: 74 TLDDDGNYTIMAAN 87
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 63.7 bits (155), Expect = 4e-14
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 10 VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
+GH ++ C A G P P+I W K+ ++ + G ++I+ + + D
Sbjct: 123 EVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPR--YSLKDGF------LQIENSREED 174
Query: 70 AGIYECYADNM 80
G YEC A+N
Sbjct: 175 QGKYECVAENS 185
Score = 60.6 bits (147), Expect = 6e-13
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 10/78 (12%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYT---HMYVNLHEWHYGTDRIKSKIEI 62
+ +G F C A+G P P I W K+G ++ V G I + I
Sbjct: 15 NQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQP---GGISI---LRI 68
Query: 63 DPATQM-DAGIYECYADN 79
+P D YEC A+N
Sbjct: 69 EPVRAGRDDAPYECVAEN 86
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance,
cell adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 63.7 bits (155), Expect = 5e-14
Identities = 20/74 (27%), Positives = 27/74 (36%), Gaps = 1/74 (1%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
D C +GKP P I WFKDG + T+ H + + +
Sbjct: 18 DLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNE-KKSHRVQFKDGALFFYRTMQGK 76
Query: 66 TQMDAGIYECYADN 79
+ D G Y C A N
Sbjct: 77 KEQDGGEYWCVAKN 90
Score = 63.0 bits (153), Expect = 9e-14
Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 1/77 (1%)
Query: 6 DYEYVLGHKIVFIC-MAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDP 64
D G + C KG P P + W KDGV L ++ + I
Sbjct: 117 DTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISN 176
Query: 65 ATQMDAGIYECYADNMY 81
+D G Y+C A N+
Sbjct: 177 VEPIDEGNYKCIAQNLV 193
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 64.1 bits (156), Expect = 6e-14
Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 3/80 (3%)
Query: 10 VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
LG + +C A G P P ++W KDG + + S++ I + D
Sbjct: 209 NLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDS---SELTIRNVDKND 265
Query: 70 AGIYECYADNMYNVDTRTFK 89
Y C A+N +
Sbjct: 266 EAEYVCIAENKAGEQDASIH 285
Score = 59.9 bits (145), Expect = 2e-12
Identities = 14/75 (18%), Positives = 22/75 (29%), Gaps = 6/75 (8%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
E+ G V +C P I W G ++ V ++I
Sbjct: 109 PQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY------LQIRGI 162
Query: 66 TQMDAGIYECYADNM 80
+ D G Y C +
Sbjct: 163 KKTDEGTYRCEGRIL 177
Score = 50.3 bits (120), Expect = 6e-09
Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 9/76 (11%)
Query: 10 VLGHKIVFICMAKGKPR-PHITWFK-DGVELYTHM--YVNLHEWHYGTDRIKSKIEIDPA 65
+G F+C G + I+WF +G +L + + S + I A
Sbjct: 15 SVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS-----STLTIYNA 69
Query: 66 TQMDAGIYECYADNMY 81
DAGIY+C
Sbjct: 70 NIDDAGIYKCVVTAED 85
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 62.0 bits (150), Expect = 6e-14
Identities = 19/82 (23%), Positives = 26/82 (31%), Gaps = 8/82 (9%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKI----- 60
+ +G + C A G P P I W+ +G I +
Sbjct: 30 SQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAA 89
Query: 61 ---EIDPATQMDAGIYECYADN 79
ID + D G YEC A N
Sbjct: 90 STISIDTLVEEDTGTYECRASN 111
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 64.6 bits (157), Expect = 6e-14
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 10 VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
++ H I +C A+G P P W+K V L++ + I A D
Sbjct: 225 MVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGT---LIIKDAVVED 281
Query: 70 AGIYECYADN 79
+G Y C +N
Sbjct: 282 SGKYLCVVNN 291
Score = 58.8 bits (142), Expect = 6e-12
Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 15/74 (20%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
G VF C G P ++W KDG + +S + I+
Sbjct: 316 TQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS---------------ESVLRIESV 360
Query: 66 TQMDAGIYECYADN 79
+ D G+Y+C+ N
Sbjct: 361 KKEDKGMYQCFVRN 374
Score = 57.6 bits (139), Expect = 2e-11
Identities = 14/70 (20%), Positives = 20/70 (28%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
C A G P P I W + + G D ++ A
Sbjct: 19 STGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQ 78
Query: 72 IYECYADNMY 81
+Y C A N +
Sbjct: 79 VYACLARNQF 88
Score = 43.4 bits (102), Expect = 2e-06
Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 7/82 (8%)
Query: 10 VLGHKIVFICMAK---GKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPAT 66
+ G+ V C+ ++W D E Y ++ ++ I
Sbjct: 116 IRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPS---GELHIREVG 172
Query: 67 QMDA-GIYECYADNMYNVDTRT 87
D Y+C + +TR
Sbjct: 173 PEDGYKSYQCRTKHRLTGETRL 194
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 64.1 bits (156), Expect = 8e-14
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 15/77 (19%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIK---SKIEI 62
D + + + C A G+P+P W K+G L T DRI+ + I
Sbjct: 304 DIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLT------------RDRIQIEQGTLNI 351
Query: 63 DPATQMDAGIYECYADN 79
DAG+Y+C A+N
Sbjct: 352 TIVNLSDAGMYQCVAEN 368
Score = 57.9 bits (140), Expect = 1e-11
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 10/72 (13%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYT--HMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
K+ C KG P+PHI W +G ++ ++ + G+ I +P D
Sbjct: 23 EKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVD---GSLLI-----NNPNKTQD 74
Query: 70 AGIYECYADNMY 81
AG Y+C A N +
Sbjct: 75 AGTYQCIATNSF 86
Score = 57.2 bits (138), Expect = 3e-11
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 10/71 (14%)
Query: 10 VLGHKIVFICMAKGKPRPHITWFK-DGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQM 68
G + C A G P P I W + DG + + G +EI Q
Sbjct: 218 EKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSN---GI------LEIPNFQQE 268
Query: 69 DAGIYECYADN 79
DAG YEC A+N
Sbjct: 269 DAGSYECVAEN 279
Score = 51.4 bits (123), Expect = 2e-09
Identities = 13/81 (16%), Positives = 18/81 (22%), Gaps = 16/81 (19%)
Query: 12 GHKIVFICMA-KGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKS----KIEIDPAT 66
G +V +C W + Y R S + I
Sbjct: 117 GQGMVLLCGPPPHSGELSYAWIFNEYPSYQ-----------DNRRFVSQETGNLYIAKVE 165
Query: 67 QMDAGIYECYADNMYNVDTRT 87
+ D G Y C N
Sbjct: 166 KSDVGNYTCVVTNTVTNHKVL 186
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 63.6 bits (155), Expect = 1e-13
Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 4/84 (4%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
+ G + GKP P ITW K + + + + T S + +
Sbjct: 113 AVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIV----TRSFTSLVFPNGV 168
Query: 66 TQMDAGIYECYADNMYNVDTRTFK 89
+ DAG Y A N + +D +T +
Sbjct: 169 ERKDAGFYVVCAKNRFGIDQKTVE 192
Score = 62.9 bits (153), Expect = 2e-13
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Query: 10 VLGHKIVFICMAKGKPRPHITWFKDGVELYTH-MYVNLHEWHYGTDRIKSKIEIDPATQM 68
+C G P+P + W++ G E+ + + E+ G ++ I T
Sbjct: 17 RYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY----HQLIIASVTDD 72
Query: 69 DAGIYECYADN 79
DA +Y+ A N
Sbjct: 73 DATVYQVRATN 83
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 63.7 bits (155), Expect = 1e-13
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
D E +G + + C+A GKPRP + W +DG L + + + ++
Sbjct: 303 DTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSG---------GELRFSKL 353
Query: 66 TQMDAGIYECYADN 79
D+G+Y+C A+N
Sbjct: 354 VLEDSGMYQCVAEN 367
Score = 59.9 bits (145), Expect = 2e-12
Identities = 17/70 (24%), Positives = 22/70 (31%), Gaps = 11/70 (15%)
Query: 10 VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
+ G + C A G P P I W K + + I D
Sbjct: 220 LTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLS-----SEPL------LHIQNVDFED 268
Query: 70 AGIYECYADN 79
G YEC A+N
Sbjct: 269 EGTYECEAEN 278
Score = 57.9 bits (140), Expect = 1e-11
Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 6/70 (8%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
K+ C A+ P W +G EL + + G I +P DAG
Sbjct: 22 EEKVTLTCRARANPPATYRWKMNGTELKMGPD-SRYRLVAGDLVI-----SNPVKAKDAG 75
Query: 72 IYECYADNMY 81
Y+C A N
Sbjct: 76 SYQCVATNAR 85
Score = 51.0 bits (122), Expect = 3e-09
Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 14/87 (16%)
Query: 12 GHKIVFICMA-KGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIE----IDPAT 66
G ++F C P W + + R S+ I
Sbjct: 116 GWGVMFTCSPPPHYPALSYRWLLNEFPNFIPA---------DGRRFVSQTTGNLYIAKTE 166
Query: 67 QMDAGIYECYADNMYNVDTRTFKTDFS 93
D G Y C+A + + T++ + FS
Sbjct: 167 ASDLGNYSCFATSHIDFITKSVFSKFS 193
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 60.0 bits (146), Expect = 1e-13
Identities = 20/79 (25%), Positives = 26/79 (32%), Gaps = 17/79 (21%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIK-----SKI 60
+ +G I C A G P P I WFKD L I +
Sbjct: 19 NQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVE------------DSGIVLKDGNRNL 66
Query: 61 EIDPATQMDAGIYECYADN 79
I + D G+Y C A +
Sbjct: 67 TIRRVRKEDEGLYTCQACS 85
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 63.6 bits (154), Expect = 2e-13
Identities = 15/83 (18%), Positives = 22/83 (26%), Gaps = 9/83 (10%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
DYE + F K P+ TW + I
Sbjct: 335 DYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDN---------GYSISKFCN 385
Query: 66 TQMDAGIYECYADNMYNVDTRTF 88
+ G Y +A+N T+ F
Sbjct: 386 HKHQPGEYIFHAENDDAQFTKMF 408
Score = 57.8 bits (139), Expect = 2e-11
Identities = 12/87 (13%), Positives = 21/87 (24%), Gaps = 6/87 (6%)
Query: 2 HSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIE 61
+ E + I + W L + +L + I
Sbjct: 53 YEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILK--- 109
Query: 62 IDPATQMDAGIYECYADNMYNVDTRTF 88
T+ AG Y + + T F
Sbjct: 110 ---MTETQAGEYLLFIQSEATNYTILF 133
Score = 55.9 bits (134), Expect = 8e-11
Identities = 12/76 (15%), Positives = 21/76 (27%), Gaps = 2/76 (2%)
Query: 6 DYEYVLGHKIVFICMAKGK-PRPHITWFKDGVELYTHMYVNLHEWHYG-TDRIKSKIEID 63
+G + C A +TW + L Y + + T +
Sbjct: 236 QLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVS 295
Query: 64 PATQMDAGIYECYADN 79
+ D G Y C +
Sbjct: 296 SVARNDTGYYTCSSSK 311
Score = 53.2 bits (127), Expect = 7e-10
Identities = 15/87 (17%), Positives = 23/87 (26%), Gaps = 6/87 (6%)
Query: 9 YVLGHKIVFICMAKGKPRPHITWFKDG------VELYTHMYVNLHEWHYGTDRIKSKIEI 62
C + G P P TW K E T N + S +
Sbjct: 419 LAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTL 478
Query: 63 DPATQMDAGIYECYADNMYNVDTRTFK 89
+ + + + +C A N T
Sbjct: 479 NMSEAIKGFLVKCCAYNSLGTSCETIL 505
Score = 45.1 bits (106), Expect = 5e-07
Identities = 8/74 (10%), Positives = 22/74 (29%), Gaps = 9/74 (12%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
Y + ++ +C+++ P P + W + + + +
Sbjct: 148 PYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLH-------- 199
Query: 66 TQMDAGIYECYADN 79
++ C A N
Sbjct: 200 -ELFGTDIRCCARN 212
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 60.6 bits (147), Expect = 2e-13
Identities = 20/74 (27%), Positives = 26/74 (35%), Gaps = 4/74 (5%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
D E V G F C +G P P + WFKD + + + G + I
Sbjct: 50 DMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGN----CSLTISEV 105
Query: 66 TQMDAGIYECYADN 79
D Y C A N
Sbjct: 106 CGDDDAKYTCKAVN 119
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 63.0 bits (153), Expect = 2e-13
Identities = 15/74 (20%), Positives = 23/74 (31%), Gaps = 6/74 (8%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
+ G +C A G P+P + W +G L + E T I
Sbjct: 321 NLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDT------IIFRDT 374
Query: 66 TQMDAGIYECYADN 79
+Y+C N
Sbjct: 375 QISSRAVYQCNTSN 388
Score = 61.0 bits (148), Expect = 1e-12
Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 1/76 (1%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
D+ I+ C AKG P P W ++ + +
Sbjct: 26 DHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGT-LVIDFRSGGR 84
Query: 66 TQMDAGIYECYADNMY 81
+ G Y+C+A N +
Sbjct: 85 PEEYEGEYQCFARNKF 100
Score = 60.7 bits (147), Expect = 1e-12
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 8/80 (10%)
Query: 10 VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
+ G ++ C+A G P P I W+K G +L + + + I ++ D
Sbjct: 235 LRGMDLLLECIASGVPTPDIAWYKKGGDLPSD--------KAKFENFNKALRITNVSEED 286
Query: 70 AGIYECYADNMYNVDTRTFK 89
+G Y C A N T
Sbjct: 287 SGEYFCLASNKMGSIRHTIS 306
Score = 46.8 bits (111), Expect = 1e-07
Identities = 14/82 (17%), Positives = 20/82 (24%), Gaps = 17/82 (20%)
Query: 12 GHKIVFICMA-KGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKS----KIEIDPAT 66
G + C G P P I W +E T R+ +
Sbjct: 131 GAPLTLQCNPPPGLPSPVIFWMSSSMEPIT-----------QDKRVSQGHNGDLYFSNVM 179
Query: 67 QMDA-GIYECYADNMYNVDTRT 87
D Y C A + +
Sbjct: 180 LQDMQTDYSCNARFHFTHTIQQ 201
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 62.0 bits (150), Expect = 5e-13
Identities = 12/85 (14%), Positives = 20/85 (23%), Gaps = 1/85 (1%)
Query: 6 DYEYVLGHKIVFICMAKGKPRP-HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDP 64
G + I + P+P H W + R S++ +
Sbjct: 322 TVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTR 381
Query: 65 ATQMDAGIYECYADNMYNVDTRTFK 89
+ G Y N F
Sbjct: 382 LKGTEGGTYTFLVSNSDVNAAIAFN 406
Score = 61.6 bits (149), Expect = 7e-13
Identities = 17/89 (19%), Positives = 27/89 (30%), Gaps = 7/89 (7%)
Query: 8 EYVLGHKIVFICMAKGKPRPHITWFK-------DGVELYTHMYVNLHEWHYGTDRIKSKI 60
Y + C+A G P P I W+ + L+ ++ +
Sbjct: 417 TYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQS 476
Query: 61 EIDPATQMDAGIYECYADNMYNVDTRTFK 89
ID + G EC A N + F
Sbjct: 477 SIDSSAFKHNGTVECKAYNDVGKTSAYFN 505
Score = 60.1 bits (145), Expect = 2e-12
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 1/88 (1%)
Query: 1 MHSHFDYEYVLGHKIVFICMAKGKPRP-HITWFKDGVELYTHMYVNLHEWHYGTDRIKSK 59
S Y G + C K + TW ++ + N ++
Sbjct: 215 SVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQAT 274
Query: 60 IEIDPATQMDAGIYECYADNMYNVDTRT 87
+ I A D+G++ CYA+N + T
Sbjct: 275 LTISSARVNDSGVFMCYANNTFGSANVT 302
Score = 38.5 bits (89), Expect = 9e-05
Identities = 12/85 (14%), Positives = 26/85 (30%), Gaps = 17/85 (20%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
G +I +C G + W + ++ +++ + A + G
Sbjct: 51 GDEIRLLCTDPG----FVKWTFEILDETNENK-------------QNEWITEKAEATNTG 93
Query: 72 IYECYADNMYNVDTRTFKTDFSITF 96
Y C + + F D + F
Sbjct: 94 KYTCTNKHGLSNSIYVFVRDPAKLF 118
Score = 28.5 bits (63), Expect = 0.35
Identities = 10/77 (12%), Positives = 13/77 (16%), Gaps = 10/77 (12%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFK--DGVELYTHMYVNLHEWHYGTDRIKSKIEID 63
+ + C P K G L + IKS
Sbjct: 123 SLYGKEDNDTLVRCPL-TDPEVTNYSLKGCQGKPLPKDLRFIPDPK--AGIMIKSVKRAY 179
Query: 64 PATQMDAGIYECYADNM 80
C D
Sbjct: 180 -----HRLCLHCSVDQE 191
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 61.3 bits (148), Expect = 6e-13
Identities = 15/89 (16%), Positives = 25/89 (28%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
G I +C+ G + W E + I+S + I A
Sbjct: 190 QTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSA 249
Query: 66 TQMDAGIYECYADNMYNVDTRTFKTDFSI 94
D+G Y C N + ++
Sbjct: 250 ELEDSGTYTCNVTESVNDHQDEKAINITV 278
Score = 42.4 bits (99), Expect = 4e-06
Identities = 13/79 (16%), Positives = 22/79 (27%), Gaps = 10/79 (12%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
V C + W + E M S + + T +D G
Sbjct: 15 SSTFVLTCSGSAP----VVWERMSQEPPQEMAKAQD------GTFSSVLTLTNLTGLDTG 64
Query: 72 IYECYADNMYNVDTRTFKT 90
Y C ++ ++T K
Sbjct: 65 EYFCTHNDSRGLETDERKR 83
Score = 31.6 bits (71), Expect = 0.022
Identities = 8/68 (11%), Positives = 16/68 (23%), Gaps = 15/68 (22%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
+I C P+ +T + ++ D + I +
Sbjct: 110 ITEITIPCRVTD-PQLVVTLHEKKGDV---------ALPVPYDHQRGFSGIF-----EDR 154
Query: 72 IYECYADN 79
Y C
Sbjct: 155 SYICKTTI 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 61.3 bits (148), Expect = 7e-13
Identities = 14/90 (15%), Positives = 29/90 (32%), Gaps = 2/90 (2%)
Query: 1 MHSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIK--S 58
S + V H G+P P + W +G L ++ +
Sbjct: 250 PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHG 309
Query: 59 KIEIDPATQMDAGIYECYADNMYNVDTRTF 88
+ ++ T ++ G Y A N + + +
Sbjct: 310 CLRLNQPTHVNNGNYTLLAANPFGQASASI 339
Score = 54.0 bits (129), Expect = 3e-10
Identities = 8/80 (10%), Positives = 23/80 (28%), Gaps = 6/80 (7%)
Query: 1 MHSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKI 60
+ +G ++ C +G+ W +E + +
Sbjct: 162 KVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM-KSGGLPSLGLTL---- 216
Query: 61 EIDPATQMDAGIYECYADNM 80
+ + ++ C+A+N
Sbjct: 217 -ANVTSDLNRKNVTCWAEND 235
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 59.8 bits (145), Expect = 8e-13
Identities = 14/78 (17%), Positives = 21/78 (26%), Gaps = 14/78 (17%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSK----IE 61
E+ G V +C P I W G ++ R ++
Sbjct: 109 PQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILK----------KDVRFIVLSNNYLQ 158
Query: 62 IDPATQMDAGIYECYADN 79
I + D G Y C
Sbjct: 159 IRGIKKTDEGTYRCEGRI 176
Score = 58.3 bits (141), Expect = 3e-12
Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 5/78 (6%)
Query: 6 DYEYVLGHKIVFICMAKGKPR-PHITWFK-DGVELYTHMYVNLHEWHYGTDRIKSKIEID 63
E +G F+C G + I+WF +G +L + D S + I
Sbjct: 11 QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPN---QQRISVVWNDDDSSTLTIY 67
Query: 64 PATQMDAGIYECYADNMY 81
A DAGIY+C
Sbjct: 68 NANIDDAGIYKCVVTAED 85
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 59.5 bits (144), Expect = 1e-12
Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 1/75 (1%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEI-DP 64
G + C + G P P W K ++ + + + +++ I +
Sbjct: 101 SENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNL 160
Query: 65 ATQMDAGIYECYADN 79
D G YEC A N
Sbjct: 161 QITEDPGEYECNATN 175
Score = 53.7 bits (129), Expect = 2e-10
Identities = 12/84 (14%), Positives = 20/84 (23%), Gaps = 12/84 (14%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHIT--WFKDGVELYTHMYVNLHEWHYGTDRIKSKIEID 63
+ C + W K+GVEL + + I+
Sbjct: 12 VIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTAT----------RKNASNMEYRIN 61
Query: 64 PATQMDAGIYECYADNMYNVDTRT 87
D+G Y C +
Sbjct: 62 KPRAEDSGEYHCVYHFVSAPKANA 85
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 56.9 bits (138), Expect = 2e-12
Identities = 17/76 (22%), Positives = 25/76 (32%), Gaps = 8/76 (10%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYT--HMYVNLHEWHYGTDRIKSKIEID 63
G F GKP P W+K+GV++ +Y E + + I
Sbjct: 14 SQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE------LVIR 67
Query: 64 PATQMDAGIYECYADN 79
T D+ A N
Sbjct: 68 DVTGEDSASIMVKAIN 83
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 60.1 bits (145), Expect = 2e-12
Identities = 17/89 (19%), Positives = 25/89 (28%), Gaps = 9/89 (10%)
Query: 1 MHSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKI 60
+S DYE + F K P+ TW E + I
Sbjct: 330 TNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSF-------PCEQKGLDNG--YSI 380
Query: 61 EIDPATQMDAGIYECYADNMYNVDTRTFK 89
+ G Y +A+N T+ F
Sbjct: 381 SKFCNHKHQPGEYIFHAENDDAQFTKMFT 409
Score = 58.9 bits (142), Expect = 5e-12
Identities = 12/83 (14%), Positives = 23/83 (27%), Gaps = 2/83 (2%)
Query: 6 DYEYVLGHKIVFICMA-KGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIK-SKIEID 63
+G + C A +TW + L Y + + I+ +
Sbjct: 236 QLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVS 295
Query: 64 PATQMDAGIYECYADNMYNVDTR 86
+ D G Y C + +
Sbjct: 296 SVARNDTGYYTCSSSKHPSQSAL 318
Score = 56.6 bits (136), Expect = 4e-11
Identities = 13/88 (14%), Positives = 21/88 (23%), Gaps = 6/88 (6%)
Query: 2 HSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIE 61
+ E + I + W L N +R +
Sbjct: 53 YEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSL------NCQPHFDLQNRGVVSMV 106
Query: 62 IDPATQMDAGIYECYADNMYNVDTRTFK 89
I T+ AG Y + + T F
Sbjct: 107 ILKMTETQAGEYLLFIQSEATNYTILFT 134
Score = 45.8 bits (108), Expect = 3e-07
Identities = 10/81 (12%), Positives = 24/81 (29%), Gaps = 9/81 (11%)
Query: 10 VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
+ ++ +C+++ P P + W + + + K + + D
Sbjct: 152 KMENQDALVCISESVPEPIVEWVLCDSQGES------CKEESPAVVKKEEKVLHELFGTD 205
Query: 70 AGIYECYADNMYNVDTRTFKT 90
C A N + T
Sbjct: 206 ---IRCCARNELGRECTRLFT 223
Score = 25.0 bits (54), Expect = 4.4
Identities = 1/31 (3%), Positives = 12/31 (38%)
Query: 56 IKSKIEIDPATQMDAGIYECYADNMYNVDTR 86
+ + + ++ + Y +++ ++
Sbjct: 13 VLINHKNNDSSVGKSSSYPMVSESPEDLGCA 43
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 59.7 bits (144), Expect = 3e-12
Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 3/87 (3%)
Query: 5 FDYEYVLGHKIVFICMAKGKPRP-HITWFKDGVELYTHMYVNLHEWHYGTDRIK--SKIE 61
+ G +C K + W K + V + WH G + +
Sbjct: 196 TSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLT 255
Query: 62 IDPATQMDAGIYECYADNMYNVDTRTF 88
I A D+G++ CYA+N + T
Sbjct: 256 ISSARVDDSGVFMCYANNTFGSANVTT 282
Score = 43.2 bits (101), Expect = 2e-06
Identities = 8/69 (11%), Positives = 14/69 (20%), Gaps = 8/69 (11%)
Query: 12 GHKIVFICMAKGKPRPHITWFK-DGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
+ C + + DG L T + + I +
Sbjct: 106 DSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPK--AGITI-----KNVKRAYHR 158
Query: 71 GIYECYADN 79
C A
Sbjct: 159 LCVRCAAQR 167
Score = 32.4 bits (73), Expect = 0.012
Identities = 9/68 (13%), Positives = 18/68 (26%), Gaps = 16/68 (23%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
G + C+ + W ++ + K++ + A G
Sbjct: 27 GDTLSLTCIDPDF----VRWTFKT------------YFNEMVENKKNEWIQEKAEATRTG 70
Query: 72 IYECYADN 79
Y C N
Sbjct: 71 TYTCSNSN 78
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 56.5 bits (137), Expect = 3e-12
Identities = 18/74 (24%), Positives = 26/74 (35%), Gaps = 5/74 (6%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
+ G FI + KP + W+ +GVEL + HY +EI
Sbjct: 17 SHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKI-----HYTNTSGVLTLEILDC 71
Query: 66 TQMDAGIYECYADN 79
D+G Y N
Sbjct: 72 HTDDSGTYRAVCTN 85
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 59.2 bits (143), Expect = 3e-12
Identities = 11/82 (13%), Positives = 24/82 (29%), Gaps = 2/82 (2%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
+ + G +C A + + ++H + + +D
Sbjct: 195 ELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAI--PQQSDFHNNRYQKVLTLNLDQV 252
Query: 66 TQMDAGIYECYADNMYNVDTRT 87
AG Y C A N+ + +
Sbjct: 253 DFQHAGNYSCVASNVQGKHSTS 274
Score = 40.3 bits (94), Expect = 2e-05
Identities = 11/70 (15%), Positives = 20/70 (28%), Gaps = 10/70 (14%)
Query: 12 GHKIVFICMAKG-KPRPHITWFK-DGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
+ C+ ++ + G L H + WH I A +
Sbjct: 104 DQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHG--------FTIHRAKFIQ 155
Query: 70 AGIYECYADN 79
+ Y+C A
Sbjct: 156 SQDYQCSALM 165
Score = 35.3 bits (81), Expect = 0.001
Identities = 12/76 (15%), Positives = 20/76 (26%), Gaps = 14/76 (18%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
G + C+ G + W W +D S + + AT + G
Sbjct: 19 GATVTLRCVGNGS----VEWDGPPSP----------HWTLYSDGSSSILSTNNATFQNTG 64
Query: 72 IYECYADNMYNVDTRT 87
Y C +
Sbjct: 65 TYRCTEPGDPLGGSAA 80
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 59.3 bits (143), Expect = 4e-12
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 3/77 (3%)
Query: 5 FDYEYVLGHKIVFICMAK-GKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEID 63
+ + C++ G+P ITW D + V GT + S +
Sbjct: 125 QKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFL--SGTVTVTSLWILV 182
Query: 64 PATQMDAGIYECYADNM 80
P++Q+D C ++
Sbjct: 183 PSSQVDGKNVTCKVEHE 199
Score = 52.4 bits (125), Expect = 1e-09
Identities = 11/75 (14%), Positives = 20/75 (26%), Gaps = 12/75 (16%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPH-ITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDP 64
+ Y+ ++ C A+ P P W L +++ I P
Sbjct: 226 NNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQ-----------GAQLLIRP 274
Query: 65 ATQMDAGIYECYADN 79
+ C N
Sbjct: 275 VDKPINTTLICNVTN 289
Score = 41.2 bits (96), Expect = 1e-05
Identities = 12/89 (13%), Positives = 24/89 (26%), Gaps = 18/89 (20%)
Query: 10 VLGHKIVFICMAKGKPRP-----HITWFKDGVELYTHMYVNLHEWHY-GTDRIK------ 57
LG + C + +TW + G ++ Y + R++
Sbjct: 13 FLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARL 72
Query: 58 ------SKIEIDPATQMDAGIYECYADNM 80
+ + + D G Y C
Sbjct: 73 GAELRNASLRMFGLRVEDEGNYTCLFVTF 101
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 56.8 bits (137), Expect = 4e-12
Identities = 19/83 (22%), Positives = 28/83 (33%), Gaps = 3/83 (3%)
Query: 10 VLGHKIVFICMAKGKPRP-HITWFKDGVELYTHMYVNLH-EWHYGTDRIKSKIEIDPATQ 67
+ G K C + P P I W L + E + + S + I +
Sbjct: 26 LHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVR 85
Query: 68 MD-AGIYECYADNMYNVDTRTFK 89
D IY C A N + DT +
Sbjct: 86 ADFQTIYNCTAWNSFGSDTEIIR 108
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 56.5 bits (136), Expect = 4e-12
Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 7/91 (7%)
Query: 6 DYEYVLGHKIVFICMAKGKP---RPHITWFKDGVELYTHM---YVNLHEWHYGTDRIKS- 58
+G I FI K + +P I WFK ++ L E R+ +
Sbjct: 16 GGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTF 75
Query: 59 KIEIDPATQMDAGIYECYADNMYNVDTRTFK 89
+++I A AG Y C D+ +F
Sbjct: 76 EMQIIKAKDNFAGNYRCEVTYKDKFDSCSFD 106
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 59.2 bits (143), Expect = 5e-12
Identities = 14/83 (16%), Positives = 25/83 (30%), Gaps = 16/83 (19%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
D Y+ G + C + P P +W +G+ + I
Sbjct: 568 DSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHT----------------QVLFIAKI 611
Query: 66 TQMDAGIYECYADNMYNVDTRTF 88
T + G Y C+ N+ +
Sbjct: 612 TPNNNGTYACFVSNLATGRNNSI 634
Score = 57.7 bits (139), Expect = 2e-11
Identities = 17/82 (20%), Positives = 26/82 (31%), Gaps = 16/82 (19%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
+ Y G + C A P +WF +G + ++ I
Sbjct: 212 NTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQST----------------QELFIPNI 255
Query: 66 TQMDAGIYECYADNMYNVDTRT 87
T ++G Y C A N RT
Sbjct: 256 TVNNSGSYTCQAHNSDTGLNRT 277
Score = 56.9 bits (137), Expect = 4e-11
Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 16/74 (21%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
Y G + C A P +W DG ++ I
Sbjct: 390 YTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHT----------------QELFISNI 433
Query: 66 TQMDAGIYECYADN 79
T+ ++G+Y C A+N
Sbjct: 434 TEKNSGLYTCQANN 447
Score = 51.9 bits (124), Expect = 2e-09
Identities = 11/68 (16%), Positives = 19/68 (27%), Gaps = 8/68 (11%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
+ F C + + W+ +G L + + T+ DA
Sbjct: 482 KDAVAFTCEPEAQNTT-YLWWVNGQSL-------PVSPRLQLSNGNRTLTLFNVTRNDAR 533
Query: 72 IYECYADN 79
Y C N
Sbjct: 534 AYVCGIQN 541
Score = 51.9 bits (124), Expect = 2e-09
Identities = 10/68 (14%), Positives = 20/68 (29%), Gaps = 8/68 (11%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
+ F C + + W+ + L + L + + T+ D
Sbjct: 126 KDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQLSNG-------NRTLTLFNVTRNDTA 177
Query: 72 IYECYADN 79
Y+C N
Sbjct: 178 SYKCETQN 185
Score = 48.8 bits (116), Expect = 2e-08
Identities = 9/86 (10%), Positives = 21/86 (24%), Gaps = 11/86 (12%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSK-----------I 60
G +++ + + +W+K + + +
Sbjct: 14 GKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASL 73
Query: 61 EIDPATQMDAGIYECYADNMYNVDTR 86
I Q D G Y + V+
Sbjct: 74 LIQNIIQNDTGFYTLHVIKSDLVNEE 99
Score = 47.3 bits (112), Expect = 8e-08
Identities = 11/69 (15%), Positives = 20/69 (28%), Gaps = 8/69 (11%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
+ C + + W+ + L + L + + T+ D G
Sbjct: 304 EDAVALTCEPEIQN-TTYLWWVNNQSLPVSPRLQLSN-------DNRTLTLLSVTRNDVG 355
Query: 72 IYECYADNM 80
YEC N
Sbjct: 356 PYECGIQNE 364
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 57.6 bits (139), Expect = 6e-12
Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 5/77 (6%)
Query: 10 VLGHKIVFICMAKGK-PRPHITWFKDGVEL----YTHMYVNLHEWHYGTDRIKSKIEIDP 64
G C + + P + W +DG L T V L E + S++ I
Sbjct: 15 ARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITS 74
Query: 65 ATQMDAGIYECYADNMY 81
D G Y+C +
Sbjct: 75 LQLSDTGQYQCLVFLGH 91
Score = 54.1 bits (130), Expect = 1e-10
Identities = 14/75 (18%), Positives = 21/75 (28%), Gaps = 13/75 (17%)
Query: 6 DYEYVLGHKIVFICMAKGKPRP-HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDP 64
D C A+G P P + W +D V L T + + +
Sbjct: 115 DRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPG----------HGPQRSLHVPG 164
Query: 65 ATQMDAGIYECYADN 79
+ C A N
Sbjct: 165 LN--KTSSFSCEAHN 177
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 102
Score = 54.7 bits (132), Expect = 1e-11
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 6/74 (8%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
+ + G C + + +TW+KDG +L + V + ++ + A
Sbjct: 20 EVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEA-----VGCTRRLVVQQA 73
Query: 66 TQMDAGIYECYADN 79
Q +AG Y C A
Sbjct: 74 GQAEAGEYSCEAGG 87
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 55.1 bits (133), Expect = 1e-11
Identities = 12/74 (16%), Positives = 22/74 (29%), Gaps = 4/74 (5%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
D + G F C + WF D L+ + + + G + +
Sbjct: 22 DVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEI-DAQPGGYH---VLTLRQL 77
Query: 66 TQMDAGIYECYADN 79
D+G A +
Sbjct: 78 ALKDSGTIYFEAGD 91
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 54.8 bits (132), Expect = 1e-11
Identities = 20/77 (25%), Positives = 27/77 (35%), Gaps = 11/77 (14%)
Query: 12 GHKIVFICMAK-GKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
G + FIC AK P + W + L + I + I DA
Sbjct: 25 GADVTFICTAKSKSPAYTLVWTRLHNGK-------LPSRAMDFNGI---LTIRNVQPSDA 74
Query: 71 GIYECYADNMYNVDTRT 87
G Y C NM+ +D T
Sbjct: 75 GTYVCTGSNMFAMDQGT 91
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 57.8 bits (139), Expect = 1e-11
Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 8/91 (8%)
Query: 7 YEYVLGHKIVFICMAKGKPRPHITWFKDGVEL-------YTHMYVNLHEWHYGTDRIKSK 59
E LG +I IC G+ W +G + Y + + + +
Sbjct: 219 MEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITV 278
Query: 60 IEIDPATQMD-AGIYECYADNMYNVDTRTFK 89
+ I + C+A N + +D +
Sbjct: 279 LNISEIESRFYKHPFTCFAKNTHGIDAAYIQ 309
Score = 49.3 bits (117), Expect = 1e-08
Identities = 12/91 (13%), Positives = 24/91 (26%), Gaps = 14/91 (15%)
Query: 11 LGHKIVFIC------MAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDP 64
+ +C + P + W+KD L + +K ++ +
Sbjct: 117 VAGDGGLVCPYMEFFKNENNELPKLQWYKDCKP--------LLLDNIHFSGVKDRLIVMN 168
Query: 65 ATQMDAGIYECYADNMYNVDTRTFKTDFSIT 95
+ G Y C+A Y
Sbjct: 169 VAEKHRGNYTCHASYTYLGKQYPITRVIEFI 199
Score = 46.6 bits (110), Expect = 1e-07
Identities = 16/81 (19%), Positives = 24/81 (29%), Gaps = 10/81 (12%)
Query: 16 VFICMAKGKP-RPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYE 74
V C + ITW+KD + + K+ PA D+G Y
Sbjct: 24 VRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHK-----EKLWFVPAKVEDSGHYY 78
Query: 75 CYADNMYNVDTRTFKTDFSIT 95
C N + + S
Sbjct: 79 CVVRN----SSYCLRIKISAK 95
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 57.7 bits (139), Expect = 1e-11
Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 4/84 (4%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDG-VELYTHMYVNLHEWHYGTDRIKSKIEIDP 64
+ G +C A K G +L + + + +Y R + ++
Sbjct: 195 KLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRA---LSLNA 251
Query: 65 ATQMDAGIYECYADNMYNVDTRTF 88
DAGIY C A N T T
Sbjct: 252 VDFQDAGIYSCVASNDVGTRTATM 275
Score = 45.7 bits (108), Expect = 3e-07
Identities = 11/77 (14%), Positives = 22/77 (28%), Gaps = 10/77 (12%)
Query: 6 DYEYVLGHKIVFICMAKGK-PRPHITWFKDGVE-LYTHMYVNLHEWHYGTDRIKSKIEID 63
+ V G + V C+ + ++ ++G + W I
Sbjct: 98 EVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRG--------FIIR 149
Query: 64 PATQMDAGIYECYADNM 80
A +D+ Y C
Sbjct: 150 KAKVLDSNTYVCKTMVN 166
Score = 42.2 bits (99), Expect = 5e-06
Identities = 12/77 (15%), Positives = 20/77 (25%), Gaps = 14/77 (18%)
Query: 11 LGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
G + C++ G + W W + S + AT +
Sbjct: 18 PGETVTLRCVSNG----SVEWDGPISPY----------WTLDPESPGSTLTTRNATFKNT 63
Query: 71 GIYECYADNMYNVDTRT 87
G Y C + T
Sbjct: 64 GTYRCTELEDPMAGSTT 80
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 54.8 bits (132), Expect = 2e-11
Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
V ++V C +P + W KDG E+ + L + + ++ +
Sbjct: 22 YVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQK-----EDTVRRLVLPAV 75
Query: 66 TQMDAGIYECYADN 79
D+G Y C D+
Sbjct: 76 QLEDSGEYLCEIDD 89
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein;
1.85A {Homo sapiens}
Length = 207
Score = 56.5 bits (136), Expect = 2e-11
Identities = 9/83 (10%), Positives = 26/83 (31%), Gaps = 4/83 (4%)
Query: 6 DYEYVLGHKIVFI-CMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDP 64
E + ++ F K + + + E++ ++ H + ++ ++
Sbjct: 11 AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEG---PKYKMHIDRNTGIIEMFMEK 67
Query: 65 ATQMDAGIYECYADNMYNVDTRT 87
D G Y + + T
Sbjct: 68 LQDEDEGTYTFQLQDGKATNHST 90
Score = 56.1 bits (135), Expect = 3e-11
Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 8/85 (9%)
Query: 6 DYEYVLGHKIVFICMAKG-KPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDP 64
+E ++ C K HI W+KD E+ + + + I
Sbjct: 125 SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISV-------DEKHDFKDGICTLLITE 177
Query: 65 ATQMDAGIYECYADNMYNVDTRTFK 89
++ DAGIYE + D K
Sbjct: 178 FSKKDAGIYEVILKDDRGKDKSRLK 202
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 57.4 bits (139), Expect = 2e-11
Identities = 22/81 (27%), Positives = 28/81 (34%), Gaps = 7/81 (8%)
Query: 10 VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHY-GTDRIKSKIEIDPATQM 68
GH + F+C A G P P I W L + GT +E+ A
Sbjct: 398 DEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGT------LEVRYAQVQ 451
Query: 69 DAGIYECYADNMYNVDTRTFK 89
D G Y C A N D+
Sbjct: 452 DNGTYLCIAANAGGNDSMPAH 472
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 54.3 bits (131), Expect = 2e-11
Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 6/74 (8%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
+ ++V C + TW+KDG ++ + + D K ++ + A
Sbjct: 19 SLTFTTSERVVLTCEL-SRVDFPATWYKDGQKVEESELLVVKM-----DGRKHRLILPEA 72
Query: 66 TQMDAGIYECYADN 79
D+G +EC +
Sbjct: 73 KVQDSGEFECRTEG 86
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 57.0 bits (137), Expect = 3e-11
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 6/66 (9%)
Query: 17 FICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECY 76
+ K I W+KD + L + + + R + + + DAG Y C
Sbjct: 145 LSEFTRDKTDVKIQWYKDSLLL------DKDNEKFLSVRGTTHLLVHDVALEDAGYYRCV 198
Query: 77 ADNMYN 82
+
Sbjct: 199 LTFAHE 204
Score = 50.5 bits (120), Expect = 6e-09
Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 5/75 (6%)
Query: 15 IVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYE 74
+ + A PR ++TW K+ W + + PA Q D+G Y
Sbjct: 43 VPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQD-----GALWLLPALQEDSGTYV 97
Query: 75 CYADNMYNVDTRTFK 89
C N D + +
Sbjct: 98 CTTRNASYCDKMSIE 112
Score = 45.8 bits (108), Expect = 2e-07
Identities = 13/86 (15%), Positives = 22/86 (25%), Gaps = 12/86 (13%)
Query: 6 DYEYVLGHKIVFICMA---KGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSK--- 59
LG ++ C G P + W+ Y
Sbjct: 235 TISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNEN 294
Query: 60 -----IEIDPATQMDAGI-YECYADN 79
+ DP T+ D + ++C N
Sbjct: 295 YIEVPLIFDPVTREDLHMDFKCVVHN 320
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 56.2 bits (135), Expect = 4e-11
Identities = 16/83 (19%), Positives = 24/83 (28%), Gaps = 18/83 (21%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
++ + + +C A G P P + KDG E
Sbjct: 194 NWTWPENSQQTPMCQAWGNPLPELKCLKDG------------------TFPLPIGESVTV 235
Query: 66 TQMDAGIYECYADNMYNVDTRTF 88
T+ G Y C A + TR
Sbjct: 236 TRDLEGTYLCRARSTQGEVTREV 258
Score = 32.7 bits (74), Expect = 0.010
Identities = 9/78 (11%), Positives = 20/78 (25%), Gaps = 17/78 (21%)
Query: 3 SHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEI 62
E G ++ C A P +GV ++++ +
Sbjct: 104 ILTKPEVSEGTEVTVKCEA----HPRAKVTLNGVPA-------------QPLGPRAQLLL 146
Query: 63 DPATQMDAGIYECYADNM 80
+ + + C A
Sbjct: 147 KATPEDNGRSFSCSATLE 164
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 54.4 bits (130), Expect = 4e-11
Identities = 16/108 (14%), Positives = 27/108 (25%), Gaps = 24/108 (22%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHY-------------- 51
V G+K+ G P P + W K + +
Sbjct: 27 TIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKL 86
Query: 52 ---GTDRIK-------SKIEIDPATQMDAGIYECYADNMYNVDTRTFK 89
R++ S ++ A + D G+Y N D
Sbjct: 87 LCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLT 134
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 53.5 bits (129), Expect = 4e-11
Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 6/74 (8%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
D G + C P + W KD + ++ + + + I A
Sbjct: 17 DQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVC-----EGTMAMLVIRGA 70
Query: 66 TQMDAGIYECYADN 79
+ DAG Y C +
Sbjct: 71 SLKDAGEYTCEVEA 84
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 53.1 bits (128), Expect = 7e-11
Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
D + +G ++ + + W K+GVEL + + D + +
Sbjct: 17 DQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKAR-YRFKKDGKRHILIFSDV 74
Query: 66 TQMDAGIYECYADN 79
Q D G Y+ +
Sbjct: 75 VQEDRGRYQVITNG 88
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 55.2 bits (132), Expect = 1e-10
Identities = 15/89 (16%), Positives = 27/89 (30%), Gaps = 9/89 (10%)
Query: 1 MHSHFDYEYVLGHKIVFIC-MAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSK 59
+ ++ + I C + K +ITW+K+ EL +
Sbjct: 132 IPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQEL--------IIDGTKYSQSGQN 183
Query: 60 IEIDPATQMDAGIYECYADNMYNVDTRTF 88
+ I D+G Y+CY
Sbjct: 184 LIIHNPELEDSGRYDCYVHYDDVRIKNDI 212
Score = 52.5 bits (125), Expect = 1e-09
Identities = 13/87 (14%), Positives = 21/87 (24%), Gaps = 5/87 (5%)
Query: 6 DYEYVLGHKIVFICMAKGKPRP----HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIE 61
+G C A I W + + ++ +
Sbjct: 237 KINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLY 296
Query: 62 IDPATQMDAG-IYECYADNMYNVDTRT 87
+ T+ G Y C N Y T T
Sbjct: 297 FENVTEEYIGNTYTCRGHNYYFDKTLT 323
Score = 31.3 bits (70), Expect = 0.028
Identities = 10/73 (13%), Positives = 16/73 (21%), Gaps = 13/73 (17%)
Query: 18 ICMAKGKPRPHITWFKDG-VELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG-IYEC 75
+ + W K G + V G + I T D+ Y C
Sbjct: 59 LSHRYNDKDNVVNWEKIGKTRRPLNRRV-----KNGD------LWIANYTSNDSHRRYLC 107
Query: 76 YADNMYNVDTRTF 88
+
Sbjct: 108 TVTTKNGDCVQGI 120
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 55.0 bits (132), Expect = 1e-10
Identities = 7/68 (10%), Positives = 22/68 (32%), Gaps = 3/68 (4%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
G ++ K + + + E++ ++ H + ++ ++ D G
Sbjct: 123 GQVRFWMQAEKLSGNAKVNYIFNEKEIFEG---PKYKMHIDRNTGIIEMFMEKLQDEDEG 179
Query: 72 IYECYADN 79
Y +
Sbjct: 180 TYTFQLQD 187
Score = 52.3 bits (125), Expect = 1e-09
Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 8/85 (9%)
Query: 6 DYEYVLGHKIVFICMAKG-KPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDP 64
+E ++ C K HI W+KD E+ + + I
Sbjct: 230 SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF-------KDGICTLLITE 282
Query: 65 ATQMDAGIYECYADNMYNVDTRTFK 89
++ DAGIYE + D K
Sbjct: 283 FSKKDAGIYEVILKDDRGKDKSRLK 307
Score = 52.3 bits (125), Expect = 1e-09
Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 6/68 (8%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
+ F C P+ +W KD V + + + K+K+ D G
Sbjct: 18 VISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVE-----SKGNKTKMTFKDLGMDDLG 71
Query: 72 IYECYADN 79
IY C +
Sbjct: 72 IYSCDVTD 79
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 51.6 bits (124), Expect = 2e-10
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 4/74 (5%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
D G ++ C + ++ WFK+G E+ + + K + I+ A
Sbjct: 16 DTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPG---PKSRYRIRVEGKKHILIIEGA 71
Query: 66 TQMDAGIYECYADN 79
T+ DA Y
Sbjct: 72 TKADAAEYSVMTTG 85
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo
sapiens}
Length = 97
Score = 51.6 bits (124), Expect = 2e-10
Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 16/76 (21%)
Query: 12 GHKIVFICMAKGKPRP-HITWFKDGVELYTHMYVNLHEWHYGTDRIKSK-----IEIDPA 65
G + ++C + + +TW+ +L + Y I + + +
Sbjct: 16 GGHVKYVCKIENYDQSTQVTWYFGVRQLE-------NSEKY---EITYEDGVAILYVKDI 65
Query: 66 TQMDAGIYECYADNMY 81
T++D G Y C N Y
Sbjct: 66 TKLDDGTYRCKVVNDY 81
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 51.5 bits (123), Expect = 3e-10
Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 7/90 (7%)
Query: 6 DYEYVLGHKIVFICMAKGKP---RPHITWFKDGVELYTH---MYVNLHEWHYGTDRI-KS 58
D E +G I F G P + WFK + ++ LH+ + ++
Sbjct: 13 DGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLF 72
Query: 59 KIEIDPATQMDAGIYECYADNMYNVDTRTF 88
++ I A G Y C D F
Sbjct: 73 ELHITDAQPAFTGSYRCEVSTKDKFDCSNF 102
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 51.6 bits (124), Expect = 3e-10
Identities = 16/74 (21%), Positives = 24/74 (32%), Gaps = 6/74 (8%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
D + VF C + W+K+GVE+ + + K+ ID
Sbjct: 17 DLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISH-----VGRFHKLVIDDV 70
Query: 66 TQMDAGIYECYADN 79
D G Y D
Sbjct: 71 RPEDEGDYTFVPDG 84
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 51.2 bits (123), Expect = 3e-10
Identities = 11/75 (14%), Positives = 18/75 (24%), Gaps = 6/75 (8%)
Query: 6 DYEYVLGHKIVFIC-MAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDP 64
E + G F C ++ W G + + K + +
Sbjct: 17 TMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATR-----QGRKYILVVRE 71
Query: 65 ATQMDAGIYECYADN 79
A DAG
Sbjct: 72 AAPSDAGEVVFSVRG 86
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 53.2 bits (127), Expect = 4e-10
Identities = 13/79 (16%), Positives = 20/79 (25%), Gaps = 8/79 (10%)
Query: 2 HSHFDYEYVLGHKIVFICMAK-GKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKI 60
D +G+ C K G W K + + I
Sbjct: 126 RCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQ-------TMPTPWLAEMTSPVI 178
Query: 61 EIDPATQMDAGIYECYADN 79
+ A+ +G Y C N
Sbjct: 179 SVKNASSEYSGTYSCTVQN 197
Score = 40.4 bits (94), Expect = 2e-05
Identities = 15/103 (14%), Positives = 25/103 (24%), Gaps = 23/103 (22%)
Query: 10 VLGHKIVFICMAKGKPRP----HITWFKDGVE---------LYTHMYVNLHEWHYGTDRI 56
G C P I W + LY+ + + + R+
Sbjct: 13 AKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRV 72
Query: 57 ----------KSKIEIDPATQMDAGIYECYADNMYNVDTRTFK 89
+ I + D G Y+C V + F
Sbjct: 73 HFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFL 115
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 52.9 bits (126), Expect = 4e-10
Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 5/92 (5%)
Query: 1 MHSHFDYEYVLGHKIVFICMAKGKP--RPHITWFKDGVELYTHMYVNLHEWHYGTDRIK- 57
+ E +G K+V C A+ + W + VN +K
Sbjct: 109 LSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKK 168
Query: 58 --SKIEIDPATQMDAGIYECYADNMYNVDTRT 87
S + ID T+ D G+Y C A + +
Sbjct: 169 FLSTLTIDGVTRSDQGLYTCAASSGLMTKKNS 200
Score = 29.0 bits (64), Expect = 0.20
Identities = 11/68 (16%), Positives = 17/68 (25%), Gaps = 6/68 (8%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
+V C+ +++ E N W K I AG
Sbjct: 24 NKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWD-----SKKGFTIPSYMISYAG 77
Query: 72 IYECYADN 79
+ C A
Sbjct: 78 MVFCEAKI 85
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 50.8 bits (122), Expect = 5e-10
Identities = 12/74 (16%), Positives = 23/74 (31%), Gaps = 6/74 (8%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
D E + G C+ P + W L +L + + ++ +
Sbjct: 17 DLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQ-----EGAMLELVVRNL 70
Query: 66 TQMDAGIYECYADN 79
D+G Y C +
Sbjct: 71 RPQDSGRYSCSFGD 84
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 50.5 bits (121), Expect = 6e-10
Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 6/74 (8%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
Y+ G ++ F+ P+ + W+K+G E+ + + I+
Sbjct: 17 AYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEH-----KGCQRILFINNC 70
Query: 66 TQMDAGIYECYADN 79
D Y A +
Sbjct: 71 QMTDDSEYYVTAGD 84
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 51.5 bits (123), Expect = 1e-09
Identities = 6/74 (8%), Positives = 15/74 (20%), Gaps = 15/74 (20%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
D + G + + P + + + +
Sbjct: 106 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ---------------GGKTLSVSQL 150
Query: 66 TQMDAGIYECYADN 79
D+G + C
Sbjct: 151 ELQDSGTWTCTVLQ 164
Score = 46.1 bits (109), Expect = 1e-07
Identities = 13/80 (16%), Positives = 18/80 (22%), Gaps = 12/80 (15%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVE--LYTHMYVNLHEWHYGTDRIKSKI--------- 60
G + C A K W L DR S+
Sbjct: 10 GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 69
Query: 61 -EIDPATQMDAGIYECYADN 79
I D+ Y C ++
Sbjct: 70 LIIKNLKIEDSDTYICEVED 89
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 50.1 bits (119), Expect = 1e-09
Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 5/84 (5%)
Query: 10 VLGHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVN-LHEWHYGTDRIK--SKIEIDP 64
+G K+V C A+ + W + VN + G++ K S + ID
Sbjct: 21 SVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDG 80
Query: 65 ATQMDAGIYECYADNMYNVDTRTF 88
T+ D G+Y C A + +
Sbjct: 81 VTRSDQGLYTCAASSGLMTKKNST 104
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding,
cell adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 49.3 bits (118), Expect = 2e-09
Identities = 10/68 (14%), Positives = 20/68 (29%), Gaps = 6/68 (8%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
G VF + + W + G ++ L + + + + D G
Sbjct: 23 GSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLAT-----EGTRHTLTVREVGPADQG 76
Query: 72 IYECYADN 79
Y A +
Sbjct: 77 SYAVIAGS 84
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 49.2 bits (118), Expect = 2e-09
Identities = 14/74 (18%), Positives = 19/74 (25%), Gaps = 6/74 (8%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
E +G F +P H W G L + E D K + +
Sbjct: 14 GVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIE-----DGKKHILILHNC 67
Query: 66 TQMDAGIYECYADN 79
G A N
Sbjct: 68 QLGMTGEVSFQAAN 81
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 51.7 bits (123), Expect = 2e-09
Identities = 12/69 (17%), Positives = 17/69 (24%), Gaps = 11/69 (15%)
Query: 12 GHKIVFICMAKGKPRPH-ITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
+ C A P W L + + ++ P A
Sbjct: 247 RMDVKLTCKADANPPATEYHWTTLNGSLPKGVEA----------QNRTLFFKGPINYSLA 296
Query: 71 GIYECYADN 79
G Y C A N
Sbjct: 297 GTYICEATN 305
Score = 49.4 bits (117), Expect = 1e-08
Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 4/79 (5%)
Query: 12 GHKIVFICM-AKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
+V C A GKP ++W + + GT + S+ + P+ +
Sbjct: 150 DKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPN---GTVTVISRYRLVPSREAHQ 206
Query: 71 GIYECYADNMYNVDTRTFK 89
C + + +
Sbjct: 207 QSLACIVNYHMDRFKESLT 225
Score = 36.3 bits (83), Expect = 6e-04
Identities = 13/87 (14%), Positives = 20/87 (22%), Gaps = 17/87 (19%)
Query: 10 VLGHKIVFICMAKGKPRP----HITWFKD--GVELYTHMYVNLHEWHY-----------G 52
+G +V C +TW K G + +Y
Sbjct: 27 FIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLR 86
Query: 53 TDRIKSKIEIDPATQMDAGIYECYADN 79
I + D G+Y C
Sbjct: 87 PSFTDGTIRLSRLELEDEGVYICEFAT 113
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 49.3 bits (118), Expect = 2e-09
Identities = 14/70 (20%), Positives = 21/70 (30%), Gaps = 7/70 (10%)
Query: 10 VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
LG +I C W K+G+ + + + K+ I A D
Sbjct: 20 NLGKEICLKCEISENIPG--KWTKNGLPVQESDRLKVV-----QKGRIHKLVIANALTED 72
Query: 70 AGIYECYADN 79
G Y D
Sbjct: 73 EGDYVFAPDA 82
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 51.3 bits (122), Expect = 3e-09
Identities = 6/82 (7%), Positives = 15/82 (18%), Gaps = 15/82 (18%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
D + G + + P + + + +
Sbjct: 105 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQG---------------GKTLSVSQL 149
Query: 66 TQMDAGIYECYADNMYNVDTRT 87
D+G + C
Sbjct: 150 ELQDSGTWTCTVLQNQKKVEFK 171
Score = 47.1 bits (111), Expect = 9e-08
Identities = 13/81 (16%), Positives = 18/81 (22%), Gaps = 12/81 (14%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVE--LYTHMYVNLHEWHYGTDRIKSKI--------- 60
G + C A K W L DR S+
Sbjct: 9 GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 68
Query: 61 -EIDPATQMDAGIYECYADNM 80
I D+ Y C ++
Sbjct: 69 LIIKNLKIEDSDTYICEVEDQ 89
Score = 36.3 bits (83), Expect = 5e-04
Identities = 7/78 (8%), Positives = 22/78 (28%), Gaps = 18/78 (23%)
Query: 4 HFDYEYVLGHKIVFICMAKG--KPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIE 61
+ + C G P+ ++ + E ++ + +
Sbjct: 288 NLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEA----------------KVSKREK 331
Query: 62 IDPATQMDAGIYECYADN 79
+AG+++C +
Sbjct: 332 AVWVLNPEAGMWQCLLSD 349
Score = 30.1 bits (67), Expect = 0.080
Identities = 5/74 (6%), Positives = 11/74 (14%), Gaps = 7/74 (9%)
Query: 11 LGHKIVFICMAKGKPRPH----ITWFKDGVELY-THMYVNLHEWHYGTDRIKSKIEIDPA 65
L A+ V + L + +
Sbjct: 207 LTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLT--LPQALP 264
Query: 66 TQMDAGIYECYADN 79
+G +
Sbjct: 265 QYAGSGNLTLALEA 278
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 51.4 bits (122), Expect = 3e-09
Identities = 16/83 (19%), Positives = 24/83 (28%), Gaps = 18/83 (21%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
++ + + +C A G P P + KDG G
Sbjct: 379 NWTWPENSQQTPMCQAWGNPLPELKCLKDGTF----------PLPIGESV--------TV 420
Query: 66 TQMDAGIYECYADNMYNVDTRTF 88
T+ G Y C A + TR
Sbjct: 421 TRDLEGTYLCRARSTQGEVTREV 443
Score = 41.4 bits (96), Expect = 1e-05
Identities = 9/83 (10%), Positives = 21/83 (25%), Gaps = 11/83 (13%)
Query: 3 SHFDYEYVLGHKIVFICMAKG-KPRPHIT--WFKDGVELYTHMYVNLHEWHYGTDRIKSK 59
+ +G + C +G PR ++T + EL + +
Sbjct: 92 APLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKRE--------PAVGEPAEVT 143
Query: 60 IEIDPATQMDAGIYECYADNMYN 82
+ + C +
Sbjct: 144 TTVLVRRDHHGANFSCRTELDLR 166
Score = 41.0 bits (95), Expect = 1e-05
Identities = 6/74 (8%), Positives = 18/74 (24%), Gaps = 17/74 (22%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
E G ++ C A + + + +++ +
Sbjct: 292 KPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPR-----------------AQLLLKAT 334
Query: 66 TQMDAGIYECYADN 79
+ + + C A
Sbjct: 335 PEDNGRSFSCSATL 348
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 50.4 bits (120), Expect = 3e-09
Identities = 12/72 (16%), Positives = 21/72 (29%), Gaps = 9/72 (12%)
Query: 12 GHKIVFICMAKGKPRPHITW-FKDGVE---LYTHMYVNLHEWHYGTDRIKSKIEIDPATQ 67
+ C P PH+ W +GVE + V + G+ + + +
Sbjct: 119 FSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEK--DGSLSVAVDLSLPKP-- 174
Query: 68 MDAGIYECYADN 79
C N
Sbjct: 175 -WHLPVTCVGKN 185
Score = 41.2 bits (96), Expect = 8e-06
Identities = 15/85 (17%), Positives = 24/85 (28%), Gaps = 15/85 (17%)
Query: 10 VLGHKIVFICMAK---GKPRPHITWFKDG------VELYTHMYVNLHEWHYGT------D 54
LG ++ + P ++WFK G + H V EW +
Sbjct: 4 FLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRS 63
Query: 55 RIKSKIEIDPATQMDAGIYECYADN 79
+ + A G Y C
Sbjct: 64 ANTFFLVVTAANISHDGNYLCRMKL 88
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 50.4 bits (120), Expect = 4e-09
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 7/68 (10%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
++ C A+G P ++W V T G ++ S + + P +
Sbjct: 118 TGEVQLTCQARGYPLAEVSWQNVSVPANTSHIRTPE----GLYQVTSVLRLKPQ---PSR 170
Query: 72 IYECYADN 79
+ C N
Sbjct: 171 NFSCMFWN 178
Score = 42.7 bits (100), Expect = 2e-06
Identities = 10/90 (11%), Positives = 23/90 (25%), Gaps = 4/90 (4%)
Query: 11 LGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHE----WHYGTDRIKSKIEIDPAT 66
+G + C + + + ++ + E K+ I
Sbjct: 16 VGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQ 75
Query: 67 QMDAGIYECYADNMYNVDTRTFKTDFSITF 96
D+G Y C D + ++
Sbjct: 76 VRDSGQYRCLVICGAAWDYKYLTVKVKASY 105
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 48.5 bits (116), Expect = 4e-09
Identities = 13/68 (19%), Positives = 21/68 (30%), Gaps = 7/68 (10%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
G C + W K L +L + D + +++I + DAG
Sbjct: 23 GATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQ-----DGTRCELQIHDLSVADAG 75
Query: 72 IYECYADN 79
Y C
Sbjct: 76 EYSCMCGQ 83
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 50.6 bits (121), Expect = 5e-09
Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 12/87 (13%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYT---HMYVNLHEWHYGTDRIKSKIEI 62
+E LG + C K + + ++ + + V++ G +
Sbjct: 255 AWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRN---GD------LFF 305
Query: 63 DPATQMDAGIYECYADNMYNVDTRTFK 89
D G+Y CYA +T + +
Sbjct: 306 KKVQVEDGGVYTCYAMGETFNETLSVE 332
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 48.5 bits (115), Expect = 5e-09
Identities = 13/81 (16%), Positives = 21/81 (25%), Gaps = 5/81 (6%)
Query: 10 VLGHKIVFICMAKGKPRP--HITWFKDGVELYT---HMYVNLHEWHYGTDRIKSKIEIDP 64
+ G + F C A W D L Y +L + + +
Sbjct: 23 IXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRN 82
Query: 65 ATQMDAGIYECYADNMYNVDT 85
G Y+C N +
Sbjct: 83 VEFTSEGXYQCVISNHFGSSY 103
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 48.1 bits (115), Expect = 6e-09
Identities = 13/72 (18%), Positives = 24/72 (33%), Gaps = 6/72 (8%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
+ + VF C P +TW K +EL + + + ++ I
Sbjct: 17 NLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQ-----EGLTLRLTISAL 70
Query: 66 TQMDAGIYECYA 77
+ D+ Y C
Sbjct: 71 EKADSDTYTCDI 82
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 48.1 bits (115), Expect = 6e-09
Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 7/68 (10%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
G V C + W+K L +L + D + +++I DAG
Sbjct: 34 GATAVLRCELSKMAP--VEWWKGHETLRDGDRHSLRQ-----DGARCELQIRGLVAEDAG 86
Query: 72 IYECYADN 79
Y C
Sbjct: 87 EYLCMCGK 94
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1;
immunoglobulin superfamily, integrin-binding, cell
adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3
b.1.1.4 PDB: 1ij9_A 1vsc_A
Length = 202
Score = 49.0 bits (116), Expect = 1e-08
Identities = 11/79 (13%), Positives = 21/79 (26%), Gaps = 8/79 (10%)
Query: 11 LGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
+G + C G P +W N S + ++P + +
Sbjct: 15 IGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTT--------STLTMNPVSFGNE 66
Query: 71 GIYECYADNMYNVDTRTFK 89
Y C A + +
Sbjct: 67 HSYLCTATCESRKLEKGIQ 85
Score = 44.8 bits (105), Expect = 5e-07
Identities = 10/79 (12%), Positives = 20/79 (25%), Gaps = 4/79 (5%)
Query: 4 HFDYEYVLGHKIVFICMAKG---KPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKI 60
H G I C R I K + + ++ + + ++
Sbjct: 98 HLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKS-LEV 156
Query: 61 EIDPATQMDAGIYECYADN 79
P + + C A
Sbjct: 157 TFTPVIEDIGKVLVCRAKL 175
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 49.5 bits (118), Expect = 1e-08
Identities = 11/79 (13%), Positives = 23/79 (29%), Gaps = 14/79 (17%)
Query: 12 GHKIVFICMAK-GKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
G + C A K ++ ++++G +H+ S + I
Sbjct: 97 GEPLALRCHAWKDKLVYNVLYYRNGKAF--------KFFHWN-----SNLTILKTNISHN 143
Query: 71 GIYECYADNMYNVDTRTFK 89
G Y C + +
Sbjct: 144 GTYHCSGMGKHRYTSAGIS 162
Score = 44.5 bits (105), Expect = 6e-07
Identities = 12/69 (17%), Positives = 16/69 (23%), Gaps = 16/69 (23%)
Query: 12 GHKIVFICMAKGKPRPH-ITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
+ C P WF +G T I A+ D+
Sbjct: 16 EETVTLHCEVLHLPGSSSTQWFLNGTATQTS---------------TPSYRITSASVNDS 60
Query: 71 GIYECYADN 79
G Y C
Sbjct: 61 GEYRCQRGL 69
Score = 39.5 bits (92), Expect = 3e-05
Identities = 12/73 (16%), Positives = 23/73 (31%), Gaps = 18/73 (24%)
Query: 12 GHKIVFICMAKGKPRPHIT-----WFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPAT 66
G+ + C K + ++ L + S+ +I A
Sbjct: 185 GNLVTLSCETKLLLQRPGLQLYFSFYMGSK--------TLRGRNTS-----SEYQILTAR 231
Query: 67 QMDAGIYECYADN 79
+ D+G+Y C A
Sbjct: 232 REDSGLYWCEAAT 244
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 48.5 bits (115), Expect = 1e-08
Identities = 15/71 (21%), Positives = 17/71 (23%), Gaps = 14/71 (19%)
Query: 11 LGHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQM 68
LG KI+ C W K GV L K E +
Sbjct: 12 LGSKILLTCSLNDSATEVTGHRWLKGGVVLKE------------DALPGQKTEFKVDSDD 59
Query: 69 DAGIYECYADN 79
G Y C
Sbjct: 60 QWGEYSCVFLP 70
Score = 46.9 bits (111), Expect = 7e-08
Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 3/81 (3%)
Query: 12 GHKIVFICMAKGKPRP-HITWFKDGVELYTHMYVNLHE-WHYGTDRIKSKIEIDPAT-QM 68
G + +C ++ P W+K + + + + +S++ I+ +
Sbjct: 98 GETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEA 157
Query: 69 DAGIYECYADNMYNVDTRTFK 89
D G Y C + D
Sbjct: 158 DPGQYRCNGTSSKGSDQAIIT 178
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 49.1 bits (116), Expect = 2e-08
Identities = 12/80 (15%), Positives = 20/80 (25%)
Query: 10 VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
+ H + F + W+ + +N + K + P D
Sbjct: 31 LFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLND 90
Query: 70 AGIYECYADNMYNVDTRTFK 89
G Y C N F
Sbjct: 91 TGNYTCMLRNTTYCSKVAFP 110
Score = 48.7 bits (115), Expect = 2e-08
Identities = 9/64 (14%), Positives = 16/64 (25%), Gaps = 9/64 (14%)
Query: 19 CMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYAD 78
+P ITW+ ++ + + A + G Y C
Sbjct: 147 GYFPSSVKPTITWYMGCYKI---------QNFNNVIPEGMNLSFLIALISNNGNYTCVVT 197
Query: 79 NMYN 82
N
Sbjct: 198 YPEN 201
Score = 43.7 bits (102), Expect = 1e-06
Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 10/97 (10%)
Query: 3 SHFDYEYVLGHKIVFICMA----KGKPRPHITWFKDGV---ELYTHMYVNLHEWHYGT-- 53
H YE G +++ C R + W DG ++ + +N H T
Sbjct: 232 DHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTED 291
Query: 54 DRIKSKIEIDPATQMD-AGIYECYADNMYNVDTRTFK 89
+ + I T D Y C+A + + K
Sbjct: 292 ETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAK 328
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 48.7 bits (115), Expect = 2e-08
Identities = 11/78 (14%), Positives = 23/78 (29%), Gaps = 9/78 (11%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQM-DA 70
G ++ C P I W + + E + + + +++ +
Sbjct: 128 GTTVILTCPQY--PGSEILWQHNDKNI------GGDEDDKNIGSDEDHLSLKEFSELEQS 179
Query: 71 GIYECYADNMYNVDTRTF 88
G Y CY D +
Sbjct: 180 GYYVCYPRGSKPEDANFY 197
Score = 46.8 bits (110), Expect = 7e-08
Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 15/77 (19%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
++ C +ITWFKDG + K K + + G
Sbjct: 18 DGSVLLTC---DAEAKNITWFKDGKMIGF------------LTEDKKKWNLGSNAKDPRG 62
Query: 72 IYECYADNMYNVDTRTF 88
+Y+C + + +
Sbjct: 63 MYQCKGSQNKSKPLQVY 79
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 47.9 bits (114), Expect = 2e-08
Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 14/81 (17%)
Query: 6 DYEYVLGHKIVFICMAK-GKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDP 64
E+ G I+ C + KP +T+F++G + I
Sbjct: 94 HLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQ-------------KFSHLDPTFSIPQ 140
Query: 65 ATQMDAGIYECYADNMYNVDT 85
A +G Y C + Y + +
Sbjct: 141 ANHSHSGDYHCTGNIGYTLFS 161
Score = 42.9 bits (101), Expect = 2e-06
Identities = 13/69 (18%), Positives = 17/69 (24%), Gaps = 16/69 (23%)
Query: 12 GHKIVFICMAKGKPRPH-ITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
+ C P I WF +G + TH A D+
Sbjct: 19 EDSVTLTCQGARSPESDSIQWFHNGNLIPTH---------------TQPSYRFKANNNDS 63
Query: 71 GIYECYADN 79
G Y C
Sbjct: 64 GEYTCQTGQ 72
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 48.6 bits (116), Expect = 2e-08
Identities = 13/86 (15%), Positives = 23/86 (26%), Gaps = 10/86 (11%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTH--MYVNLHEWHYGTDRIKSKIEID 63
D G C P + W + +H + + + GT +
Sbjct: 361 DLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGT------LNFS 412
Query: 64 PATQMDAGIYECYADNMYNVDTRTFK 89
D G+Y C N+ +
Sbjct: 413 HVLLSDTGVYTCMVTNVAGNSNASAY 438
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 48.0 bits (114), Expect = 2e-08
Identities = 14/71 (19%), Positives = 19/71 (26%), Gaps = 14/71 (19%)
Query: 12 GHKIVFICMAK-GKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
G + C + ++KDG L I I AT D+
Sbjct: 100 GQPLFLRCHGWRNWDVYKVIYYKDGEAL-------------KYWYENHNISITNATVEDS 146
Query: 71 GIYECYADNMY 81
G Y C
Sbjct: 147 GTYYCTGKVWQ 157
Score = 41.4 bits (97), Expect = 5e-06
Identities = 12/69 (17%), Positives = 17/69 (24%), Gaps = 16/69 (23%)
Query: 12 GHKIVFICMAKGKPRPH-ITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
G + C WF +G S + I A D+
Sbjct: 19 GENVTLTCNGNNFFEVSSTKWFHNGSLSEET---------------NSSLNIVNAKFEDS 63
Query: 71 GIYECYADN 79
G Y+C
Sbjct: 64 GEYKCQHQQ 72
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 48.3 bits (114), Expect = 3e-08
Identities = 14/99 (14%), Positives = 27/99 (27%), Gaps = 9/99 (9%)
Query: 8 EYVLGHKIVFICMAK-GKPRPHITWFKDGVEL--------YTHMYVNLHEWHYGTDRIKS 58
+ + C ++ G P P ITW+++G L +M G + S
Sbjct: 130 VMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTS 189
Query: 59 KIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFSITFD 97
+ + + C A +
Sbjct: 190 TLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLT 228
Score = 32.1 bits (72), Expect = 0.017
Identities = 14/101 (13%), Positives = 26/101 (25%), Gaps = 17/101 (16%)
Query: 10 VLGHKIVFICMAKGKPRPH-ITWFKD---------------GVELYTHMYVNLHEWHYGT 53
+ G ++ C G + + WF G EL M+
Sbjct: 13 MRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQ 72
Query: 54 DRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDFSI 94
+ ++ + A D Y C T ++
Sbjct: 73 LDSQGRLVLAEAQVGDERDYVCVVRA-GAAGTAEATARLNV 112
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 47.2 bits (112), Expect = 4e-08
Identities = 15/91 (16%), Positives = 22/91 (24%), Gaps = 6/91 (6%)
Query: 10 VLGHKIVFIC--MAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIK----SKIEID 63
LG I I W K + + E D K ++I
Sbjct: 12 ALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIK 71
Query: 64 PATQMDAGIYECYADNMYNVDTRTFKTDFSI 94
D IY+ + + D I
Sbjct: 72 HLKTDDQDIYKVSIYDTKGKNVLEKIFDLKI 102
Score = 44.1 bits (104), Expect = 6e-07
Identities = 9/71 (12%), Positives = 19/71 (26%), Gaps = 16/71 (22%)
Query: 9 YVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQM 68
C P + ++DG L ++ ++ T
Sbjct: 112 SWTCINTTLTCEVMNGTDPELNLYQDGKHL----------------KLSQRVITHKWTTS 155
Query: 69 DAGIYECYADN 79
+ ++C A N
Sbjct: 156 LSAKFKCTAGN 166
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 47.6 bits (112), Expect = 4e-08
Identities = 13/84 (15%), Positives = 22/84 (26%), Gaps = 16/84 (19%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVEL----YTHMYVNLHEWHYGTDRIKSK-------- 59
G+ I C ++TW+ ++ +G S+
Sbjct: 151 GNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFS 210
Query: 60 ----IEIDPATQMDAGIYECYADN 79
+ I A DAG C
Sbjct: 211 GARNLVIRAAKITDAGRVWCELAT 234
Score = 36.8 bits (84), Expect = 3e-04
Identities = 12/96 (12%), Positives = 19/96 (19%), Gaps = 27/96 (28%)
Query: 11 LGHKIVFIC---MAKGKPRPHITWFKDG------------------VELYTHMYVNLHEW 49
G + C +A P I+W K + +
Sbjct: 16 AGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESF 75
Query: 50 HYGTDRI------KSKIEIDPATQMDAGIYECYADN 79
R + + D G Y C
Sbjct: 76 GDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQ 111
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 47.4 bits (113), Expect = 6e-08
Identities = 17/86 (19%), Positives = 24/86 (27%), Gaps = 9/86 (10%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTH--MYVNLHEWHYGTDRIKSKIEID 63
D G C A ++W + TH V + GT +
Sbjct: 350 DLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGT------LNFT 402
Query: 64 PATQMDAGIYECYADNMYNVDTRTFK 89
T D G+Y C N T +
Sbjct: 403 NVTVQDTGMYTCMVSNSVGNTTASAT 428
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain
C2; IG domain, structural protein; NMR {Homo sapiens}
SCOP: b.1.1.4
Length = 104
Score = 45.4 bits (108), Expect = 6e-08
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 5/68 (7%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
GHKI + W K+G E+ + ++ + + K + I + D
Sbjct: 31 GHKIRLTVEL-ADHDAEVKWLKNGQEIQM----SGSKYIFESIGAKRTLTISQCSLADDA 85
Query: 72 IYECYADN 79
Y+C
Sbjct: 86 AYQCVVGG 93
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 46.9 bits (111), Expect = 9e-08
Identities = 11/69 (15%), Positives = 20/69 (28%), Gaps = 4/69 (5%)
Query: 12 GHKIVFICMAKGKPRPHITWFK-DGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
+ C A+G P+ + W D L + + S + I+
Sbjct: 131 TSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTT---TN 187
Query: 71 GIYECYADN 79
I+ C
Sbjct: 188 EIFYCTFRR 196
Score = 30.7 bits (69), Expect = 0.051
Identities = 10/88 (11%), Positives = 23/88 (26%), Gaps = 18/88 (20%)
Query: 10 VLGHKIVFICMAKGKPRP-----HITWFKDGVELYTHMYVNLHEWHYGTD---RI----- 56
G + C + + + W + + ++ + R
Sbjct: 14 EYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKD 73
Query: 57 -----KSKIEIDPATQMDAGIYECYADN 79
+ ++I DAG+Y C
Sbjct: 74 QLSLGNAALQITDVKLQDAGVYRCMISY 101
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 44.9 bits (106), Expect = 3e-07
Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 16/69 (23%)
Query: 12 GHKIVFICMAKGKPRPHIT-WFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
+ C P + T WF + + + S ID AT D+
Sbjct: 22 KDSVTLKCQGAYSPEDNSTQWFHNESLISSQ---------------ASSYFIDAATVNDS 66
Query: 71 GIYECYADN 79
G Y C +
Sbjct: 67 GEYRCQTNL 75
Score = 43.3 bits (102), Expect = 1e-06
Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 14/72 (19%)
Query: 9 YVLGHKIVFICMAK-GKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQ 67
+ I C + +T+ ++G + +H+ S I AT
Sbjct: 100 FKEEDPIHLRCHSWKNTALHKVTYLQNGKDR--------KYFHHN-----SDFHIPKATL 146
Query: 68 MDAGIYECYADN 79
D+G Y C
Sbjct: 147 KDSGSYFCRGLV 158
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 43.7 bits (103), Expect = 3e-07
Identities = 12/70 (17%), Positives = 18/70 (25%), Gaps = 4/70 (5%)
Query: 10 VLGHKIVFICMAKGKPRPHITWFK-DGVELYTHMYVNLHEWHY---GTDRIKSKIEIDPA 65
V G + C + W LY L + + I +
Sbjct: 19 VEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDV 78
Query: 66 TQMDAGIYEC 75
+ D G Y C
Sbjct: 79 SLSDEGQYTC 88
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 45.0 bits (106), Expect = 4e-07
Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 18/90 (20%)
Query: 1 MHSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIK--- 57
+ + C++ +I W + L T+R+
Sbjct: 114 FLQVTNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQL------------TERMTLSQ 160
Query: 58 --SKIEIDPATQMDAGIYECYADNMYNVDT 85
S + IDP + DAG Y+C N +V
Sbjct: 161 NNSILRIDPIKREDAGEYQCEISNPVSVRR 190
Score = 38.1 bits (88), Expect = 1e-04
Identities = 9/80 (11%), Positives = 20/80 (25%), Gaps = 11/80 (13%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLH---------EWHYGTDRIKS--KI 60
+ ++ + W+K + + G + I S +
Sbjct: 14 DNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSL 73
Query: 61 EIDPATQMDAGIYECYADNM 80
T D G+Y +
Sbjct: 74 LFQMITMKDMGVYTLDMTDE 93
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 44.3 bits (104), Expect = 6e-07
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Query: 12 GHKIVFICMAKG-KPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
+ C++ G +P ITW D + V GT + S + P++Q+D
Sbjct: 131 EPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFL--SGTVTVTSLWILVPSSQVDG 188
Query: 71 GIYECYADN 79
C ++
Sbjct: 189 KQVTCKVEH 197
Score = 30.8 bits (69), Expect = 0.037
Identities = 11/87 (12%), Positives = 21/87 (24%), Gaps = 18/87 (20%)
Query: 10 VLGHKIVFICMAKGKPRP-----HITWFKDGVELYTHMYVNLHE-------------WHY 51
LG + C + +TW + G ++
Sbjct: 12 FLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARL 71
Query: 52 GTDRIKSKIEIDPATQMDAGIYECYAD 78
G + + + + D G Y C
Sbjct: 72 GAELRDASLRMFGLRVEDEGSYTCLFV 98
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 43.7 bits (103), Expect = 1e-06
Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 14/73 (19%)
Query: 8 EYVLGHKIVFICMAKGKPRPH-ITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPAT 66
+ I C + H +T+ ++G +H+ S I AT
Sbjct: 99 VFKEEDPIHLRCHSWKNTALHKVTYLQNGK--------GRKYFHHN-----SDFYIPKAT 145
Query: 67 QMDAGIYECYADN 79
D+G Y C
Sbjct: 146 LKDSGSYFCRGLV 158
Score = 42.6 bits (100), Expect = 2e-06
Identities = 14/69 (20%), Positives = 19/69 (27%), Gaps = 16/69 (23%)
Query: 12 GHKIVFICMAKGKPRPHIT-WFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
+ C P T WF + + + S ID AT D+
Sbjct: 22 KDSVTLKCQGAYSPEDQSTQWFHNESLISSQ---------------ASSYFIDAATVDDS 66
Query: 71 GIYECYADN 79
G Y C
Sbjct: 67 GEYRCQTQL 75
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 41.7 bits (97), Expect = 3e-06
Identities = 17/84 (20%), Positives = 25/84 (29%), Gaps = 7/84 (8%)
Query: 12 GHKIVFICMAKGKP---RPHITWFKDGVELYTH---MYVNLHEWHYGTDRIKS-KIEIDP 64
G V + GK +P I WFK + E H + + ++ I
Sbjct: 27 GKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGK 86
Query: 65 ATQMDAGIYECYADNMYNVDTRTF 88
D G Y D+ F
Sbjct: 87 VVLGDRGYYRLEVKAKDTCDSCGF 110
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 43.1 bits (100), Expect = 3e-06
Identities = 10/75 (13%), Positives = 19/75 (25%), Gaps = 2/75 (2%)
Query: 7 YEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPAT 66
+ + F+C + G + + + I
Sbjct: 241 LGPEVANVAKFLCRQSSGENCDVVVNTLGKRA--PAFEGRILLNPQDKDGSFSVVITGLR 298
Query: 67 QMDAGIYECYADNMY 81
+ DAG Y C A +
Sbjct: 299 KEDAGRYLCGAHSDG 313
Score = 36.9 bits (84), Expect = 3e-04
Identities = 9/73 (12%), Positives = 19/73 (26%), Gaps = 2/73 (2%)
Query: 17 FICMAKGKPRPHITWFKDGVEL--YTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYE 74
F C + W G + + + + + ++ T+ D G Y
Sbjct: 466 FPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYW 525
Query: 75 CYADNMYNVDTRT 87
C +
Sbjct: 526 CGVKQGHFYGETA 538
Score = 36.9 bits (84), Expect = 4e-04
Identities = 14/99 (14%), Positives = 24/99 (24%), Gaps = 14/99 (14%)
Query: 1 MHSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKS-- 58
S + V G + +C K I ++ L +
Sbjct: 335 PRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGR 394
Query: 59 ------------KIEIDPATQMDAGIYECYADNMYNVDT 85
+ ++ T DAG Y C + T
Sbjct: 395 LSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRT 433
Score = 34.2 bits (77), Expect = 0.003
Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 12/87 (13%)
Query: 15 IVFICMAKGKPRPHITWF--KDGVELYTHMYVNLHEWHYGTDRIKSKI----------EI 62
+ C K + + G+ + + + T RI+ I I
Sbjct: 130 VTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVI 189
Query: 63 DPATQMDAGIYECYADNMYNVDTRTFK 89
+ DAG Y C A + N + +
Sbjct: 190 NQLRLSDAGQYLCQAGDDSNSNKKNAD 216
Score = 30.0 bits (66), Expect = 0.11
Identities = 11/93 (11%), Positives = 24/93 (25%), Gaps = 14/93 (15%)
Query: 10 VLGHKIVFIC---MAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA- 65
V G+ + C W + G ++ + ++ + P
Sbjct: 13 VEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPEN 72
Query: 66 ----------TQMDAGIYECYADNMYNVDTRTF 88
+Q D+G Y+C +
Sbjct: 73 GTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDV 105
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 42.8 bits (100), Expect = 3e-06
Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 2/82 (2%)
Query: 4 HFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEID 63
+ E G F C A G+ + G+++ + R + +
Sbjct: 171 IQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLK--EIKVTSSRRFIASFNVV 228
Query: 64 PATQMDAGIYECYADNMYNVDT 85
T+ DAG Y C V
Sbjct: 229 NTTKRDAGKYRCMIRTEGGVGI 250
Score = 26.7 bits (58), Expect = 1.6
Identities = 5/61 (8%), Positives = 10/61 (16%), Gaps = 14/61 (22%)
Query: 19 CMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYAD 78
P + W G W+ + I +
Sbjct: 98 VKVNNGPLGNPIWNISG--------DPTRTWNRAE------LAISTFWPNFYQVIFEVIT 143
Query: 79 N 79
+
Sbjct: 144 S 144
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 41.4 bits (96), Expect = 7e-06
Identities = 11/78 (14%), Positives = 20/78 (25%), Gaps = 15/78 (19%)
Query: 2 HSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIE 61
+ ++ C G I W KDG + + K+
Sbjct: 112 NLVQVDGSRGDGSVLLTC---GLTDKTIKWLKDGSIISP------------LNATKNTWN 156
Query: 62 IDPATQMDAGIYECYADN 79
+ + G Y+C
Sbjct: 157 LGNNAKDPRGTYQCQGAK 174
Score = 34.5 bits (78), Expect = 0.002
Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 17/69 (24%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQM-DA 70
G + C ++ W K+G EL + + + +++ D+
Sbjct: 14 GTSVELTCPLDSDE--NLKWEKNGQEL--------------PQKHDKHLVLQDFSEVEDS 57
Query: 71 GIYECYADN 79
G Y CY
Sbjct: 58 GYYVCYTPA 66
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 40.7 bits (95), Expect = 1e-05
Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 4/69 (5%)
Query: 12 GHKIVFICMAKG-KPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
+ IC G P PH++W ++G EL + + SK++ +
Sbjct: 121 SNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMT---TN 177
Query: 71 GIYECYADN 79
+ C
Sbjct: 178 HSFMCLIKY 186
Score = 28.4 bits (63), Expect = 0.25
Identities = 15/81 (18%), Positives = 22/81 (27%), Gaps = 10/81 (12%)
Query: 10 VLGHKIVFICMAKGKPRPH----ITWFKDGVELYTHMYVNLHEWHYGTDRIKSK------ 59
+ C I W K+ + T M +++ W +R
Sbjct: 7 EVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLS 66
Query: 60 IEIDPATQMDAGIYECYADNM 80
I I D G YEC
Sbjct: 67 IVILALRPSDEGTYECVVLKY 87
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 41.0 bits (96), Expect = 1e-05
Identities = 20/81 (24%), Positives = 24/81 (29%), Gaps = 15/81 (18%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVEL-----YTHMYVNLHEWHYGTDRIKSKI 60
E G F C P +TW KD EL Y Y + +
Sbjct: 491 GTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRY----------NGNDYGL 540
Query: 61 EIDPATQMDAGIYECYADNMY 81
I+ D G Y A N Y
Sbjct: 541 TINRVKGDDKGEYTVRAKNSY 561
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 39.0 bits (90), Expect = 3e-05
Identities = 15/70 (21%), Positives = 18/70 (25%), Gaps = 4/70 (5%)
Query: 10 VLGHKIVFICMAKGKPRPHITWFK-DGVELYTHMYVNLHEWHYGTDRIKSK---IEIDPA 65
V G +V C K + W LY L + I I
Sbjct: 51 VAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNV 110
Query: 66 TQMDAGIYEC 75
D G Y C
Sbjct: 111 ALADEGEYTC 120
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 38.8 bits (90), Expect = 3e-05
Identities = 13/72 (18%), Positives = 24/72 (33%), Gaps = 4/72 (5%)
Query: 10 VLGHKIVFICMAKGKPRPHITWFK-DGVELYTHMYVNLHEWHYGTDRIKSK---IEIDPA 65
G + C+ + + W G ++ + Y L Y + I +
Sbjct: 14 EEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNV 73
Query: 66 TQMDAGIYECYA 77
T D G+Y+C
Sbjct: 74 TLQDEGVYKCLH 85
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 38.3 bits (88), Expect = 1e-04
Identities = 9/70 (12%), Positives = 18/70 (25%), Gaps = 9/70 (12%)
Query: 11 LGHKIVFICMAK-GKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
G + C + + W +H + ++ + D
Sbjct: 20 PGDSVTLTCPGVEPEDNATVHWVLRKPAAGSH--------PSRWAGMGRRLLLRSVQLHD 71
Query: 70 AGIYECYADN 79
+G Y CY
Sbjct: 72 SGNYSCYRAG 81
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 38.3 bits (88), Expect = 1e-04
Identities = 13/83 (15%), Positives = 24/83 (28%), Gaps = 19/83 (22%)
Query: 12 GHKIVFICMAKG-KPRPH---ITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQ 67
G G +P P TW KD + + + + AT
Sbjct: 17 GDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENN---------------TATLTVADATS 61
Query: 68 MDAGIYECYADNMYNVDTRTFKT 90
+AG Y+ + + + +
Sbjct: 62 ENAGSYKVTVQDTDTMTSVESEV 84
Score = 32.5 bits (73), Expect = 0.010
Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 5/75 (6%)
Query: 18 ICMAKGKPRPHIT--WF--KDGVELYTHMYVNLHEWHYGTDRIKS-KIEIDPATQMDAGI 72
+ + G P I W+ ++G T + + E G + + AT D
Sbjct: 213 VGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAK 272
Query: 73 YECYADNMYNVDTRT 87
+ C A ++ T
Sbjct: 273 FWCVAKLYQQIEDET 287
Score = 31.7 bits (71), Expect = 0.019
Identities = 12/78 (15%), Positives = 18/78 (23%), Gaps = 21/78 (26%)
Query: 18 ICMAKGKPRP-----HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGI 72
+ + GK H +W K + T I I T G+
Sbjct: 116 VKFSGGKTPADNYELHYSWSKGEDVIDTT----------------QDITIQEFTADKNGV 159
Query: 73 YECYADNMYNVDTRTFKT 90
Y + T
Sbjct: 160 YTVKVWGESEDSAASAST 177
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 36.5 bits (84), Expect = 3e-04
Identities = 11/89 (12%), Positives = 23/89 (25%), Gaps = 8/89 (8%)
Query: 10 VLGHKIVFIC--MAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSK----IEID 63
LGH I + W + + + + + + ++I
Sbjct: 9 ALGHGINLNIPNFQMTDDIDEVRWERGSTLVAE--FKRKMKPFLKSGAFEILANGDLKIK 66
Query: 64 PATQMDAGIYECYADNMYNVDTRTFKTDF 92
T+ D+G Y + D
Sbjct: 67 NLTRDDSGTYNVTVYSTNGTRILNKALDL 95
Score = 33.8 bits (77), Expect = 0.003
Identities = 6/65 (9%), Positives = 13/65 (20%), Gaps = 16/65 (24%)
Query: 15 IVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYE 74
C + ++ L R + + ++
Sbjct: 113 ATLTCEVLEGTDVELKLYQGKEHL----------------RSLRQKTMSYQWTNLRAPFK 156
Query: 75 CYADN 79
C A N
Sbjct: 157 CKAVN 161
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 36.8 bits (84), Expect = 4e-04
Identities = 14/101 (13%), Positives = 23/101 (22%), Gaps = 22/101 (21%)
Query: 11 LGHKIVFICMAKGKPRPH---ITWFKDG--------VELYTHMYVNLHEWHYGTDRIKSK 59
+G C + + W V Y + G R +
Sbjct: 132 VGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVD 191
Query: 60 -----------IEIDPATQMDAGIYECYADNMYNVDTRTFK 89
I++ + D GIY C +T
Sbjct: 192 LTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIV 232
Score = 36.4 bits (83), Expect = 5e-04
Identities = 12/88 (13%), Positives = 24/88 (27%), Gaps = 18/88 (20%)
Query: 10 VLGHKIVFICM---AKGKPRPHITWFK---------------DGVELYTHMYVNLHEWHY 51
+G ++ C+ + K + W + + T + N
Sbjct: 18 HVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVG 77
Query: 52 GTDRIKSKIEIDPATQMDAGIYECYADN 79
T + + + D GIY C
Sbjct: 78 DTFHNDGSLLLQDVQKADEGIYTCEIRL 105
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 35.7 bits (82), Expect = 4e-04
Identities = 14/75 (18%), Positives = 20/75 (26%), Gaps = 11/75 (14%)
Query: 10 VLGHKIVFICMAKGKPRP--HITWFKDGVELYTHMYVNLHEWHYG---TDRIKSK----I 60
G I+ C + W + L WH DR+ +
Sbjct: 16 EKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAI--CNADLGWHISPSFKDRVAPGPGLGL 73
Query: 61 EIDPATQMDAGIYEC 75
+ T D G Y C
Sbjct: 74 TLQSLTVNDTGEYFC 88
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 35.7 bits (82), Expect = 6e-04
Identities = 12/75 (16%), Positives = 21/75 (28%), Gaps = 6/75 (8%)
Query: 10 VLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIE-----IDP 64
V+ + F P + W K ++ + +R+ I
Sbjct: 8 VVYGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYN 66
Query: 65 ATQMDAGIYECYADN 79
T D YE + N
Sbjct: 67 LTSSDEDEYEMESPN 81
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell
adhesion protein, immunoglobulin fold, I-SET fold, cell
adhesion glycoprotein; 1.9A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Length = 210
Score = 35.6 bits (81), Expect = 8e-04
Identities = 11/70 (15%), Positives = 17/70 (24%), Gaps = 11/70 (15%)
Query: 11 LGHKIVFICMAKG-KPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
LG C + W L +D +S + + A+
Sbjct: 21 LGASRQLTCRLACADRGASVQWRGLDTSL----------GAVQSDTGRSVLTVRNASLSA 70
Query: 70 AGIYECYADN 79
AG C
Sbjct: 71 AGTRVCVGSC 80
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 34.4 bits (78), Expect = 0.001
Identities = 11/68 (16%), Positives = 19/68 (27%), Gaps = 7/68 (10%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
G ++ C P I W + + +K E++ +G
Sbjct: 21 GTTVILTC--PQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELE-----QSG 73
Query: 72 IYECYADN 79
Y CY
Sbjct: 74 YYVCYPRG 81
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 34.7 bits (79), Expect = 0.002
Identities = 10/69 (14%), Positives = 21/69 (30%), Gaps = 4/69 (5%)
Query: 12 GHKIVFICMAKG-KPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
I C + G P+P I W + E + + G + + + + +
Sbjct: 133 DGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGS---SG 189
Query: 71 GIYECYADN 79
C +
Sbjct: 190 EGVSCTIRS 198
Score = 31.6 bits (71), Expect = 0.019
Identities = 14/85 (16%), Positives = 24/85 (28%), Gaps = 18/85 (21%)
Query: 10 VLGHKIVFIC---MAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTD-----RI----- 56
++G C + W + ++Y + E R
Sbjct: 17 MVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRD 76
Query: 57 -----KSKIEIDPATQMDAGIYECY 76
K+ + I T D+G Y CY
Sbjct: 77 GITAGKAALRIHNVTASDSGKYLCY 101
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 33.8 bits (77), Expect = 0.003
Identities = 10/90 (11%), Positives = 22/90 (24%), Gaps = 11/90 (12%)
Query: 10 VLGHKIVFIC-MAKGKPRPHITWFKDGVELYTHMYVN--------LHEWHYGTDRIKSK- 59
+LG + G+ ITW + L + +
Sbjct: 11 ILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSY 70
Query: 60 -IEIDPATQMDAGIYECYADNMYNVDTRTF 88
+++ D G Y + ++
Sbjct: 71 SLQLSNLKMEDTGSYRAQISTKTSAKLSSY 100
Score = 28.0 bits (62), Expect = 0.39
Identities = 9/69 (13%), Positives = 16/69 (23%), Gaps = 16/69 (23%)
Query: 12 GHKIVFICMAK-GKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDA 70
++ C + W G L + + + W
Sbjct: 124 TCELHLTCSVEDADDNVSFRWEALGNTLSSQPNLTVS-WDPRIS--------------SE 168
Query: 71 GIYECYADN 79
Y C A+N
Sbjct: 169 QDYTCIAEN 177
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 34.1 bits (78), Expect = 0.003
Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 5/71 (7%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
G +++ C + H K+G+ V + H G K+ I P AG
Sbjct: 133 GERVILQCWSDIMF-EHFFLHKEGISKDPSRLV--GQIHDGVS--KANFSIGPMMLALAG 187
Query: 72 IYECYADNMYN 82
Y CY +
Sbjct: 188 TYRCYGSVTHT 198
Score = 26.8 bits (59), Expect = 1.1
Identities = 8/56 (14%), Positives = 18/56 (32%), Gaps = 9/56 (16%)
Query: 27 PHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN 82
+ +K+ +H + + + P T AG Y C + ++
Sbjct: 52 NNFMLYKED---------RIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSHPHS 98
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 33.0 bits (75), Expect = 0.004
Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 7/76 (9%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSK-----I 60
D + G VF TWF +G EL ++ E RI+ K +
Sbjct: 17 DVQVYDGEDAVFSLDLSTII--QGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRL 74
Query: 61 EIDPATQMDAGIYECY 76
+ D+G +
Sbjct: 75 ILHAVKHQDSGALVGF 90
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 33.7 bits (76), Expect = 0.005
Identities = 10/71 (14%), Positives = 20/71 (28%), Gaps = 11/71 (15%)
Query: 12 GHKIVFICMAKG-KPRPHIT--WFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQM 68
G + C +G PR ++T + EL V + + +
Sbjct: 101 GKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAV--------GEPAEVTTTVLVRRDH 152
Query: 69 DAGIYECYADN 79
+ C +
Sbjct: 153 HGANFSCRTEL 163
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer
cell, HLA, major histocompatibility complex class I
(MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 257
Score = 33.0 bits (75), Expect = 0.008
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 28 HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN 82
H ++G T + E H G K+ I P Q AG Y CY ++
Sbjct: 36 HFLLHREGKFKDTLHLI--GEHHDGVS--KANFSIGPMMQDLAGTYRCYGSVTHS 86
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC
complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A
{Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A*
3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A*
3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A*
2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Length = 207
Score = 32.6 bits (74), Expect = 0.010
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 4/73 (5%)
Query: 11 LGHKIVFICMAKG-KPRP---HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPAT 66
+ C+ W+ DGVE++ E + T R+ S + +
Sbjct: 17 ISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQD 76
Query: 67 QMDAGIYECYADN 79
++ Y+C N
Sbjct: 77 WLNGKEYKCKVSN 89
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C
region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
b.1.1.2
Length = 444
Score = 32.6 bits (74), Expect = 0.012
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Query: 17 FICMAKG-KPRP---HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGI 72
C+ I+WF + VE++T E + T R+ S + I M
Sbjct: 260 VTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKE 319
Query: 73 YECYADN 79
++C +N
Sbjct: 320 FKCKVNN 326
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 32.1 bits (73), Expect = 0.012
Identities = 10/57 (17%), Positives = 16/57 (28%), Gaps = 6/57 (10%)
Query: 25 PRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY 81
K+ L + K++ I T+ AG Y CY +
Sbjct: 31 EAREYRLDKEESPAPWDRQNPLEPKN------KARFSIPSMTEDYAGRYRCYYRSPV 81
Score = 27.1 bits (60), Expect = 0.88
Identities = 10/65 (15%), Positives = 21/65 (32%), Gaps = 5/65 (7%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
G + +C ++ P K+ E + ++ + P T + G
Sbjct: 114 GKSVTLLCQSR-SPMDTFLLCKERAAHPLLCLR--SEHGAQQHQ--AEFPMSPVTSVHGG 168
Query: 72 IYECY 76
Y C+
Sbjct: 169 TYRCF 173
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell
membrane, disulfide bond, glycoprotein, immunoglobulin
domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC;
3.60A {Homo sapiens}
Length = 589
Score = 31.5 bits (71), Expect = 0.025
Identities = 7/93 (7%), Positives = 20/93 (21%), Gaps = 15/93 (16%)
Query: 6 DYEYVLGHKIVFICMAK-------GKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKS 58
L +C+ K +I W + + Y ++ +
Sbjct: 12 SPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIIN-RTASSVTFTD 70
Query: 59 KIEIDPATQMDAGIYECYADNMYNVDTRTFKTD 91
++ C ++ +
Sbjct: 71 IASLN-------IQLTCNILTFGQLEQNVYGIT 96
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm,
mouse IGG, zinc-finger, DNA-binding, RNA-binding,
tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC;
1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Length = 207
Score = 31.4 bits (71), Expect = 0.025
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 28 HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYEC 75
+WF D VE++T E T R S++ I ++ ++C
Sbjct: 38 QFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKC 85
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin,
glycosylation, immune system; HET: NAG FUC MAN GAL;
2.13A {Mus musculus}
Length = 218
Score = 31.1 bits (70), Expect = 0.031
Identities = 14/52 (26%), Positives = 24/52 (46%)
Query: 28 HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADN 79
I+WF + VE++T E + T R+ S + I M ++C +N
Sbjct: 46 QISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNN 97
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 30.6 bits (69), Expect = 0.052
Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 9/66 (13%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
G I C + P + K+G H ++ + P +G
Sbjct: 120 GENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANF---------SLGPVDLNVSG 170
Query: 72 IYECYA 77
IY CY
Sbjct: 171 IYRCYG 176
Score = 27.9 bits (62), Expect = 0.45
Identities = 11/70 (15%), Positives = 19/70 (27%), Gaps = 7/70 (10%)
Query: 11 LGHKIVFICMA-KGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
L + C A + + K+ Y + + + ID
Sbjct: 22 LDGSVKIQCQAIREAYLTQLMIIKNST------YREIGRRLKFWNETDPEFVIDHMDANK 75
Query: 70 AGIYECYADN 79
AG Y+C
Sbjct: 76 AGRYQCQYRI 85
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 30.8 bits (68), Expect = 0.055
Identities = 10/77 (12%), Positives = 17/77 (22%), Gaps = 9/77 (11%)
Query: 1 MHSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKI 60
+ C + +W + H + I +
Sbjct: 504 KAPLQKVSLAPNSRYYLSCPMES-RHATYSWRHKENVE-----QSCEPGHQSPNCI---L 554
Query: 61 EIDPATQMDAGIYECYA 77
I+ T G Y C A
Sbjct: 555 FIENLTAQQYGHYFCEA 571
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 30.6 bits (69), Expect = 0.059
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 4/73 (5%)
Query: 11 LGHKIVFICMAKG-KPRP---HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPAT 66
+ C+ W+ DGVE++ E + T R+ S + +
Sbjct: 263 ISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQD 322
Query: 67 QMDAGIYECYADN 79
++ Y+C N
Sbjct: 323 WLNGKEYKCKVSN 335
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune
system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
b.1.1.2
Length = 344
Score = 30.6 bits (69), Expect = 0.061
Identities = 13/85 (15%), Positives = 32/85 (37%), Gaps = 2/85 (2%)
Query: 8 EYVLGHKIVFICMAKG-KPRPH-ITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
+ + +++ C+ KG P + W +G + G+ + SK+ +D +
Sbjct: 253 DELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKS 312
Query: 66 TQMDAGIYECYADNMYNVDTRTFKT 90
++ C + + T K+
Sbjct: 313 RWQQGNVFSCSVMHEALHNHYTQKS 337
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 29.9 bits (67), Expect = 0.086
Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 12 GHKIVFICMAKG-KPRPH-ITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
+++ C + P+ +TW ++G T + E GT S + ++ + D
Sbjct: 235 ENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRD 294
Query: 70 AGIYEC 75
C
Sbjct: 295 DVKLTC 300
Score = 28.7 bits (64), Expect = 0.25
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 2/70 (2%)
Query: 12 GHKIVFICMAKG-KPRP-HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMD 69
H + F C + G PR + WFK+G EL + I S ++ +
Sbjct: 132 QHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDV 191
Query: 70 AGIYECYADN 79
C +
Sbjct: 192 HSQVICEVAH 201
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 30.1 bits (66), Expect = 0.093
Identities = 11/77 (14%), Positives = 22/77 (28%), Gaps = 8/77 (10%)
Query: 1 MHSHFDYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKI 60
S+ + + G C K + W L +
Sbjct: 537 KGSYRQHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRKN-------L 588
Query: 61 EIDPATQMDAGIYECYA 77
I ++ D+G+Y+C +
Sbjct: 589 LIFNLSEGDSGVYQCLS 605
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine;
HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Length = 240
Score = 29.9 bits (67), Expect = 0.098
Identities = 13/61 (21%), Positives = 26/61 (42%)
Query: 15 IVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYE 74
V + ++ P W+ DGVE++ E + T R+ S + + ++ Y+
Sbjct: 46 CVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYK 105
Query: 75 C 75
C
Sbjct: 106 C 106
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 29.5 bits (65), Expect = 0.10
Identities = 15/77 (19%), Positives = 23/77 (29%), Gaps = 4/77 (5%)
Query: 7 YEYVLGHKIVFICMAK-GKPRPHITWFKDGVELYTHMYVNLH---EWHYGTDRIKSKIEI 62
+ G C K RP++TW K ++ + V W +
Sbjct: 24 HSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHF 83
Query: 63 DPATQMDAGIYECYADN 79
P D G Y C +
Sbjct: 84 KPIHLSDNGSYSCSTNF 100
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 29.9 bits (67), Expect = 0.11
Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 4/73 (5%)
Query: 11 LGHKIVFICMAKG-KPRP---HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPAT 66
+ C+ +WF D VE++T E T R+ S + I
Sbjct: 244 ITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQD 303
Query: 67 QMDAGIYECYADN 79
++ ++C ++
Sbjct: 304 WLNGKEFKCRVNS 316
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 29.5 bits (66), Expect = 0.11
Identities = 8/49 (16%), Positives = 11/49 (22%), Gaps = 6/49 (12%)
Query: 31 WFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADN 79
+G + + K K I AG Y C
Sbjct: 39 LHFEGSLFAVDR----PKPPERIN--KVKFYIPDMNSRMAGQYSCIYRV 81
Score = 26.0 bits (57), Expect = 1.8
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 62 IDPATQMDAGIYECYA 77
+ P T G Y C+
Sbjct: 156 LGPVTTAHRGTYRCFG 171
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 29.4 bits (66), Expect = 0.12
Identities = 8/55 (14%), Positives = 11/55 (20%), Gaps = 6/55 (10%)
Query: 25 PRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADN 79
+G + + K K I AG Y C
Sbjct: 30 GAVEYQLHFEGSLFAVDR----PKPPERIN--KVKFYIPDMNSRMAGQYSCIYRV 78
Score = 25.5 bits (56), Expect = 3.1
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 62 IDPATQMDAGIYECYA 77
+ P T G Y C+
Sbjct: 153 LGPVTTAHRGTYRCFG 168
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5
isoform 1; immunoglobulin-like fold, immune system;
1.85A {Homo sapiens}
Length = 196
Score = 29.5 bits (66), Expect = 0.12
Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 6/54 (11%)
Query: 28 HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY 81
K+G L + K++ I T+ AG Y CY +
Sbjct: 34 EYRLVKEGSPEPWDTQNPLEPKN------KARFSIPSMTEHHAGRYRCYYYSPA 81
Score = 25.2 bits (55), Expect = 3.8
Identities = 8/66 (12%), Positives = 21/66 (31%), Gaps = 4/66 (6%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
G + C ++ + ++G + ++ G + + + P T
Sbjct: 114 GENVTLQCGSRLRF-DRFILTEEGDHKLS-WTLDSQLTPSGQFQ--ALFPVGPVTPSHRW 169
Query: 72 IYECYA 77
+ CY
Sbjct: 170 MLRCYG 175
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 29.1 bits (65), Expect = 0.14
Identities = 13/85 (15%), Positives = 24/85 (28%), Gaps = 18/85 (21%)
Query: 10 VLGHKIVFIC---MAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTD-----RIKSK-- 59
++G + C K + W++ H+Y N + R +
Sbjct: 19 LVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKE 78
Query: 60 --------IEIDPATQMDAGIYECY 76
+ I D G Y C+
Sbjct: 79 SIGEGKVALRIQNVRFSDEGGYTCF 103
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 29.4 bits (65), Expect = 0.14
Identities = 5/61 (8%), Positives = 13/61 (21%), Gaps = 11/61 (18%)
Query: 19 CMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYAD 78
+ P +W + + S++ + P + C
Sbjct: 149 GSCEAGPPLTFSWTGNALSPLD-----------PETTRSSELTLTPRPEDHGTNLTCQMK 197
Query: 79 N 79
Sbjct: 198 R 198
Score = 24.8 bits (53), Expect = 5.6
Identities = 14/70 (20%), Positives = 22/70 (31%), Gaps = 14/70 (20%)
Query: 28 HITWFKDGVELYTHMYV-------NLHEWHYGTDRIKSK-------IEIDPATQMDAGIY 73
++ WF+DG Y V + G R+ + I A D G Y
Sbjct: 38 YVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDARMEDTGSY 97
Query: 74 ECYADNMYNV 83
+ +V
Sbjct: 98 FFRVERGRDV 107
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG
FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP:
b.1.1.2 b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 29.1 bits (65), Expect = 0.15
Identities = 11/48 (22%), Positives = 21/48 (43%)
Query: 28 HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYEC 75
+WF D VE++T + T R S++ I ++ ++C
Sbjct: 52 RFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKC 99
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 29.0 bits (65), Expect = 0.16
Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 4/66 (6%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
G + C ++ K+G + + L+ + ++ + P +
Sbjct: 115 GGNVTLQCDSQVAF-DGFILCKEGEDEHPQ---CLNSQPHARGSSRAIFSVGPVSPSRRW 170
Query: 72 IYECYA 77
Y CYA
Sbjct: 171 WYRCYA 176
Score = 28.3 bits (63), Expect = 0.28
Identities = 7/50 (14%), Positives = 12/50 (24%), Gaps = 6/50 (12%)
Query: 28 HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYA 77
+++ + K + I T G Y CY
Sbjct: 34 EYRLYREKKTAPWITRIPQELVK------KGQFPIPSITWEHTGRYRCYY 77
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 29.1 bits (65), Expect = 0.17
Identities = 5/65 (7%), Positives = 13/65 (20%), Gaps = 16/65 (24%)
Query: 15 IVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYE 74
C + ++ L + + + ++
Sbjct: 118 ATLTCEVLEGTDVELKLYQGKEHLRSL----------------RQKTMSYQWTNLRAPFK 161
Query: 75 CYADN 79
C A N
Sbjct: 162 CKAVN 166
Score = 27.9 bits (62), Expect = 0.39
Identities = 10/74 (13%), Positives = 20/74 (27%), Gaps = 9/74 (12%)
Query: 24 KPRPHITWFKDGVELYTHMYVNLHEWHYG---TDRIK-----SKIEIDPATQMDAGIYEC 75
+TW + + N + + DR+ + I ++ D G Y
Sbjct: 27 ASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYM 86
Query: 76 YADNMYNVDTRTFK 89
+ D
Sbjct: 87 RMLHE-TEDQWKIT 99
>3gbl_A BETA2-microglobulin; immune response, immunoglobulin domain, MHC
I, secreted, immune system; 2.10A {Ctenopharyngodon
idella}
Length = 97
Score = 28.1 bits (63), Expect = 0.20
Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 11/70 (15%)
Query: 11 LGHKIVFICMAKG-KPRP-HITWFKDGVELYTHMYVNL---HEWHYGTDRIKSKIEIDPA 65
G + IC G P I K+G + +L W + + + P
Sbjct: 17 YGKENTLICYVSGFHPPDISIELLKNGEVIADAQQTDLAFEKGWQF---HLTKSVSFKPE 73
Query: 66 TQMDAGIYEC 75
+ Y C
Sbjct: 74 ---KSDEYSC 80
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 28.3 bits (63), Expect = 0.28
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 28 HITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMYN 82
H ++G+ T + E H G K+ I TQ AG Y CY ++
Sbjct: 37 HFLLHREGMFNDT--LRLIGEHHDGVS--KANFSISRMTQDLAGTYRCYGSVTHS 87
>4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like
receptor; IG-like domain, extra celluar domain, domain
swappin nysgrc, structural genomics; 1.90A {Mus
musculus}
Length = 118
Score = 27.4 bits (61), Expect = 0.42
Identities = 8/47 (17%), Positives = 16/47 (34%), Gaps = 5/47 (10%)
Query: 30 TWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECY 76
+ + T M + + + + + EI P + G Y C
Sbjct: 40 NMVRLEKDGSTFMEKSTEPY-----KTEDEFEIGPVNETITGHYSCI 81
>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2,
protein structure initiative; 1.70A {Chromobacterium
violaceum}
Length = 163
Score = 27.9 bits (62), Expect = 0.45
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 5 FDYEYVLGHKIVFICMAKGKPRP-----HITWF 32
FD+ V++C+A+G+P+P I
Sbjct: 75 FDHITPFNAHKVYLCIAQGQPKPQNEIERIALV 107
>1lk2_B Beta-2-microglobulin; class I MHC-peptide complex, high
resolution, anisotropic AN refinement, immune system;
HET: NAG FUC; 1.35A {Mus musculus} SCOP: b.1.1.2 PDB:
1bqh_B 1cd1_B 1fo0_L* 1fzj_B* 1fzm_B* 1fzo_B* 1g6r_L
1fzk_B* 1g7q_B* 1hoc_B 1inq_B 1juf_B 1k8d_B 1kbg_L*
1kj2_L* 1kj3_L 1kpu_B* 1kpv_B* 1ld9_B 1ldp_L* ...
Length = 99
Score = 26.9 bits (60), Expect = 0.53
Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 5/46 (10%)
Query: 11 LGHKIVFICMAKGKPRPHI--TWFKDGVELYTHMYVNLH---EWHY 51
G + C PHI K+G ++ ++ +W +
Sbjct: 17 NGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSF 62
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL;
2.80A {Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 27.1 bits (59), Expect = 0.75
Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 1/78 (1%)
Query: 7 YEYVLGHKIVFIC-MAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
+ + G C + RPH+TW K + W + + +P
Sbjct: 21 HSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPV 80
Query: 66 TQMDAGIYECYADNMYNV 83
D G Y C A+ N+
Sbjct: 81 LPNDNGSYRCSANFQSNL 98
>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like
receptor; IG-like domain, domain swapping, collagen
receptor, structural genomics; 1.76A {Mus musculus}
Length = 102
Score = 26.6 bits (59), Expect = 0.87
Identities = 8/47 (17%), Positives = 16/47 (34%), Gaps = 5/47 (10%)
Query: 30 TWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAGIYECY 76
+ + T M + + + + + EI P + G Y C
Sbjct: 40 NMVRLEKDGSTFMEKSTEPY-----KTEDEFEIGPVNETITGHYSCI 81
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction
immunology, IGSF, cell SU receptor signalling,
glycosylation, membrane protein; HET: NAG; 2.90A {Homo
sapiens}
Length = 118
Score = 26.7 bits (59), Expect = 0.98
Identities = 12/84 (14%), Positives = 23/84 (27%), Gaps = 18/84 (21%)
Query: 10 VLGHKIVFICMAKGKPRP-----HITWFKDGVELYTHMYVNLHEWHYG-TDRIKSK---- 59
LG + C + +TW + G ++ Y + R++
Sbjct: 13 FLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARL 72
Query: 60 --------IEIDPATQMDAGIYEC 75
+ + D G Y C
Sbjct: 73 GAELRNASLRMFGLRVEDEGNYTC 96
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 26.7 bits (59), Expect = 1.0
Identities = 10/66 (15%), Positives = 20/66 (30%), Gaps = 10/66 (15%)
Query: 12 GHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPATQMDAG 71
G + C + +K+G + + ++ I T +G
Sbjct: 108 GGDVTLQCQTRY-GFDQFALYKEG---------DPAPYKNPERWYRASFPIITVTAAHSG 157
Query: 72 IYECYA 77
Y CY+
Sbjct: 158 TYRCYS 163
Score = 25.9 bits (57), Expect = 2.1
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 46 LHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNMY 81
L + + ++ + I + AG Y C N
Sbjct: 40 LEKLSSSRYQDQAVLFIPAMKRSLAGRYRCSYQNGS 75
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 27.0 bits (58), Expect = 1.1
Identities = 15/74 (20%), Positives = 17/74 (22%), Gaps = 16/74 (21%)
Query: 6 DYEYVLGHKIVFICMAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGTDRIKSKIEIDPA 65
Y G +V C ITW D L I
Sbjct: 15 WYPDAPGEMVVLTC--DTPEEDGITWTLDQSSEVLGSGKTLT--------------IQVK 58
Query: 66 TQMDAGIYECYADN 79
DAG Y C+
Sbjct: 59 EFGDAGQYTCHKGG 72
>3o81_A Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like)
domain, histocompatibi antigen, MHC class I molecule
from B21 chicken, immune SYST; 2.00A {Gallus gallus}
Length = 119
Score = 26.2 bits (58), Expect = 1.3
Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 11 LGHKIVFICMAKG-KPRP-HITWFKDGVEL 38
G K V C A G P IT KDGV +
Sbjct: 37 AGTKNVLNCFAAGFHPPKISITLMKDGVPM 66
>1bii_B Beta-2 microglobulin, MHC class I H-2DD; complex (MHC I/peptide),
major histocompatibility complex class I DD,
transmembrane, glycoprotein; 2.40A {Mus musculus} SCOP:
b.1.1.2
Length = 119
Score = 25.9 bits (57), Expect = 1.6
Identities = 7/46 (15%), Positives = 15/46 (32%), Gaps = 5/46 (10%)
Query: 11 LGHKIVFICMAKG--KPRPHITWFKDGVELYTHMYVNLH---EWHY 51
G + C P I K+G ++ ++ +W +
Sbjct: 37 NGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSF 82
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Length = 326
Score = 26.1 bits (58), Expect = 1.7
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 8 EYVLGHKIVFICMAKGKPRPHITWFKD 34
+ + K+ + G P +I K+
Sbjct: 96 KVCIEEKVPVVTFGAGNPTKYIRELKE 122
>3p73_B Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like)
domain, histocompatibi antigen, immune system; HET:
16A; 1.32A {Gallus gallus} PDB: 3p77_B* 3bev_B 3bew_B
3jvg_C* 2yez_B 2yf5_B 2yf6_B 2yf1_B*
Length = 99
Score = 25.7 bits (57), Expect = 1.7
Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 11 LGHKIVFICMAKGKPRPHI--TWFKDGVE 37
G K V C A G P I T KDGV
Sbjct: 17 AGTKNVLNCFAAGFHPPKISITLMKDGVP 45
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4;
beta barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 25.7 bits (56), Expect = 2.2
Identities = 13/82 (15%), Positives = 23/82 (28%), Gaps = 16/82 (19%)
Query: 10 VLGHKIVFICM--AKGKPRPHITWFKDGVELYTHMYVNLH-------EWHYGTDRIKSKI 60
LG + C + + R + W K L + K+
Sbjct: 9 FLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLLGKV 68
Query: 61 E-------IDPATQMDAGIYEC 75
+ I + D+G+Y C
Sbjct: 69 QFGEVSLTISNTNRGDSGVYCC 90
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.0 bits (56), Expect = 2.3
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 6/60 (10%)
Query: 35 GVELYTHMYVNLHEWHYG--TDRIKSKIEIDPATQMDAGIYECYADNMYNVDTRTFKTDF 92
E+ + +Y IK++ + P+ +Y D +YN D + F
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKTE-QRQPSMMTR--MYIEQRDRLYN-DNQVFAKYN 130
>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like
receptor; IG-like domain, cell membrane, glycoprotein;
1.80A {Homo sapiens} PDB: 3rp1_A
Length = 106
Score = 25.4 bits (56), Expect = 2.4
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 62 IDPATQMDAGIYECY 76
ID ++ +AG Y C
Sbjct: 69 IDSVSEGNAGPYRCI 83
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN;
1.82A {Gallus gallus}
Length = 105
Score = 25.4 bits (56), Expect = 2.5
Identities = 5/15 (33%), Positives = 6/15 (40%)
Query: 62 IDPATQMDAGIYECY 76
DAG Y+C
Sbjct: 60 FAVTNLEDAGTYQCR 74
>2pnd_A V-SET and immunoglobulin domain containing 4; complement
receptor, IG-like domain, immune system; 1.00A {Mus
musculus} PDB: 2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 25.3 bits (55), Expect = 2.8
Identities = 9/82 (10%), Positives = 21/82 (25%), Gaps = 16/82 (19%)
Query: 10 VLGHKIVFIC---MAKGKPRPHITWFKDGVELYTHMYVNLHEWHYGT-----DRIKSK-- 59
+ C +G + + W +++ + R+K
Sbjct: 14 TWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRLKVSHK 73
Query: 60 ------IEIDPATQMDAGIYEC 75
++I+ D Y C
Sbjct: 74 VPGDVSLQINTLQMDDRNHYTC 95
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 25.3 bits (55), Expect = 3.1
Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 19/92 (20%)
Query: 1 MHSHFDYEYVLGHKIVFICMAKGKPRP-HITWFKDGVELYTHMYVNLHEWHYGTDRIKSK 59
M S+ + + V+GH + C W + + W G K
Sbjct: 1 MDSYVEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLI--WTNGHRVTYQK 58
Query: 60 ----------------IEIDPATQMDAGIYEC 75
+ I+ + + D+G+Y C
Sbjct: 59 SSRYNLKGHISEGDVSLTIENSVESDSGLYCC 90
>1k5n_B Beta-2-microglobulin, light chain; MHC(major histocompatibility
complex), HLA(human leukocyte A immune system; 1.09A
{Homo sapiens} SCOP: b.1.1.2 PDB: 1a9b_B 1b0g_B 1b0r_B
1bd2_B 1cg9_B 1a9e_B 1duy_B 1eey_B 1eez_B 1efx_B
1gzp_B* 1gzq_B* 1hhg_B 1hhh_B 1hhi_B 1hhj_B 1hhk_B
1i1f_B 1i1y_B 1duz_B* ...
Length = 100
Score = 24.6 bits (54), Expect = 3.7
Identities = 8/46 (17%), Positives = 15/46 (32%), Gaps = 5/46 (10%)
Query: 11 LGHKIVFICMAKG-KPRP-HITWFKDGVELYTHMYVNLH---EWHY 51
G C G P + K+G + + +L +W +
Sbjct: 18 NGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSF 63
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A
{Streptococcus mutans} PDB: 3exs_A* 3ext_A
Length = 221
Score = 25.3 bits (55), Expect = 4.0
Identities = 6/59 (10%), Positives = 11/59 (18%), Gaps = 4/59 (6%)
Query: 26 RPHITWFKDGVELYTHMYVN----LHEWHYGTDRIKSKIEIDPATQMDAGIYECYADNM 80
+ + G + L + D + AD M
Sbjct: 28 GNEVDVIEAGTVCLLQVGSELVEVLRSLFPDKIIVADTKCADAGGTVAKNNAVRGADWM 86
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics,
oxidoreductase, flavoprotein; HET: FMN; 1.70A
{Streptococcus pneumoniae} PDB: 2z6j_A*
Length = 332
Score = 25.0 bits (55), Expect = 4.6
Identities = 4/27 (14%), Positives = 11/27 (40%)
Query: 8 EYVLGHKIVFICMAKGKPRPHITWFKD 34
+ V+ + + G P ++ F +
Sbjct: 82 DLVIEEGVKVVTTGAGNPSKYMERFHE 108
>3jts_B Beta-2-microglobulin; alpha helix, beta sheet, beta barrel,
immune response, MHC I membrane, transmembrane, disease
mutation; 2.80A {Homo sapiens}
Length = 119
Score = 24.6 bits (54), Expect = 4.7
Identities = 6/30 (20%), Positives = 8/30 (26%), Gaps = 2/30 (6%)
Query: 11 LGHKIVFICMAKGKPRPHI--TWFKDGVEL 38
G C G I K+G +
Sbjct: 37 NGKSNFLNCYVSGFHPSDIEVDLLKNGERI 66
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 24.4 bits (53), Expect = 5.5
Identities = 4/15 (26%), Positives = 7/15 (46%)
Query: 62 IDPATQMDAGIYECY 76
+ D G+Y+C
Sbjct: 73 LHNLQIKDKGLYQCI 87
>1iak_A MHC class II I-AK; histocompatibility antigen, peptide complex,
histocompa antigen I-AK; HET: NAG; 1.90A {Mus musculus}
SCOP: b.1.1.2 d.19.1.1 PDB: 1d9k_C* 1k2d_A* 1jl4_A
2pxy_C 1u3h_C 2z31_C 1muj_A* 1lnu_A* 3c5z_C 3c60_C
3c6l_C 3rdt_C 2iad_A 1iao_A 1es0_A 3cup_A* 3mbe_A*
1f3j_A*
Length = 199
Score = 24.7 bits (54), Expect = 6.0
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 11 LGHKIVFICMAKG-KPRP-HITWFKDGVELYTHM 42
LG IC P +ITW ++ + +
Sbjct: 103 LGQPNTLICFVDNIFPPVINITWLRNSKSVTDGV 136
>1m2k_A Silent information regulator 2; protein-ligand complex, gene
regulation; HET: APR; 1.47A {Archaeoglobus fulgidus}
SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A*
1ici_A*
Length = 249
Score = 24.4 bits (54), Expect = 7.9
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 2 HSHFDYEYVLGHKIVFICMAKGKP-RPHITWF 32
++ F+ E + C G RP + W
Sbjct: 128 NNSFEVESAPKIPPLPKCDKCGSLLRPGVVWA 159
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 24.1 bits (52), Expect = 8.1
Identities = 12/94 (12%), Positives = 22/94 (23%), Gaps = 11/94 (11%)
Query: 10 VLGHKIVFIC-MAKGKPRPHITWFKDG----VELYTHMYVNLHEWHYG---TDRIKSKIE 61
V G + + + +TWF VE + G D +
Sbjct: 17 VSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALY 76
Query: 62 IDPATQMDAGIYECYADNMYNVDTRTFKTDFSIT 95
I + D Y + + +
Sbjct: 77 ISKVQKEDNSTYIM---RVLKKTGNEQEWKIKLQ 107
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 24.2 bits (52), Expect = 8.4
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 60 IEIDPATQMDAGIYECYADNMYNVDTRTFKT 90
I I D G + C N ++ +T +
Sbjct: 83 IVIHNLDYSDNGTFTCDVKNPPDIVGKTSQV 113
>3lqz_A HLA class II histocompatibility antigen, DP alpha; MHC, immune,
disulfide bond, glycoprotein, immune respo membrane, MHC
II, transmembrane, immune system; HET: NAG NDG; 3.25A
{Homo sapiens}
Length = 181
Score = 23.9 bits (52), Expect = 9.9
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 11 LGHKIVFICMAKG-KPRP-HITWFKDGVELYTHM 42
LG IC P ++TW +G + +
Sbjct: 99 LGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGV 132
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.140 0.465
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,633,682
Number of extensions: 84844
Number of successful extensions: 974
Number of sequences better than 10.0: 1
Number of HSP's gapped: 674
Number of HSP's successfully gapped: 397
Length of query: 97
Length of database: 6,701,793
Length adjustment: 63
Effective length of query: 34
Effective length of database: 4,942,770
Effective search space: 168054180
Effective search space used: 168054180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.9 bits)