BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9152
(324 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QS7|A Chain A, The 1.8 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
pdb|1QS7|C Chain C, The 1.8 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
Length = 145
Score = 111 bits (277), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 91/146 (62%), Gaps = 10/146 (6%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYS-I 116
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G ++
Sbjct: 6 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 65
Query: 117 MNHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKE 176
+N + D K+ G+ISA++LR V+ LGE L++EE+++MI+E
Sbjct: 66 LNLMARKMKDTD-SEEELKEAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIRE 124
Query: 177 VDVDGDGRIDFNGDGYFSFEEFVEIV 202
DVDGDG++ ++EEFV+++
Sbjct: 125 ADVDGDGQV--------NYEEFVQVM 142
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 62/131 (47%), Gaps = 26/131 (19%)
Query: 10 SIVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPV 55
I EFKEAF LFDKDGDG + + T L + P
Sbjct: 5 QIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPE 64
Query: 56 FLIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEE 103
FL + E KEAFR+FDKDG+G I+ EL VM +LG+ +EE+ +M+ E
Sbjct: 65 FLNLMARKMKDTDSEEELKEAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIRE 124
Query: 104 VDINGKKAGNY 114
D++G NY
Sbjct: 125 ADVDGDGQVNY 135
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 33/108 (30%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF--------------- 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G IDF
Sbjct: 18 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD 77
Query: 188 --------------NGDGYFSFEEFVEIVYNMGATTEEKTADQEEKEL 221
+G+G+ S E ++ N+G EK D+E E+
Sbjct: 78 SEEELKEAFRVFDKDGNGFISAAELRHVMTNLG----EKLTDEEVDEM 121
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E KEAFR+FDKDG+G + A R T E E R D D
Sbjct: 81 ELKEAFRVFDKDGNGFISAAELRHVMTNLGEKLTDE------------EVDEMIREADVD 128
Query: 72 GDGSITKEELGRVMRS 87
GDG + EE +VM +
Sbjct: 129 GDGQVNYEEFVQVMMA 144
>pdb|1VRK|A Chain A, The 1.9 Angstrom Structure Of E84k-Calmodulin Rs20 Peptide
Complex
Length = 148
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 91/146 (62%), Gaps = 10/146 (6%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYS-I 116
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G ++
Sbjct: 9 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 68
Query: 117 MNHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKE 176
+N + D K+ G+ISA++LR V+ LGE L++EE+++MI+E
Sbjct: 69 LNLMARKMKDTD-SEEKLKEAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIRE 127
Query: 177 VDVDGDGRIDFNGDGYFSFEEFVEIV 202
DVDGDG++ ++EEFV+++
Sbjct: 128 ADVDGDGQV--------NYEEFVQVM 145
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 62/131 (47%), Gaps = 26/131 (19%)
Query: 10 SIVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPV 55
I EFKEAF LFDKDGDG + + T L + P
Sbjct: 8 QIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPE 67
Query: 56 FLIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEE 103
FL + + KEAFR+FDKDG+G I+ EL VM +LG+ +EE+ +M+ E
Sbjct: 68 FLNLMARKMKDTDSEEKLKEAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIRE 127
Query: 104 VDINGKKAGNY 114
D++G NY
Sbjct: 128 ADVDGDGQVNY 138
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 33/108 (30%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF--------------- 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G IDF
Sbjct: 21 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD 80
Query: 188 --------------NGDGYFSFEEFVEIVYNMGATTEEKTADQEEKEL 221
+G+G+ S E ++ N+G EK D+E E+
Sbjct: 81 SEEKLKEAFRVFDKDGNGFISAAELRHVMTNLG----EKLTDEEVDEM 124
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
+ KEAFR+FDKDG+G + A R T E E R D D
Sbjct: 84 KLKEAFRVFDKDGNGFISAAELRHVMTNLGEKLTDE------------EVDEMIREADVD 131
Query: 72 GDGSITKEELGRVMRS 87
GDG + EE +VM +
Sbjct: 132 GDGQVNYEEFVQVMMA 147
>pdb|1QTX|A Chain A, The 1.65 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
Length = 148
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 91/146 (62%), Gaps = 10/146 (6%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYS-I 116
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G ++
Sbjct: 9 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 68
Query: 117 MNHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKE 176
+N + D K+ G+ISA++LR V+ LGE L++EE+++MI+E
Sbjct: 69 LNLMARKMKDTD-SEEELKEAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIRE 127
Query: 177 VDVDGDGRIDFNGDGYFSFEEFVEIV 202
DVDGDG++ ++EEFV+++
Sbjct: 128 ADVDGDGQV--------NYEEFVQVM 145
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 62/131 (47%), Gaps = 26/131 (19%)
Query: 10 SIVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPV 55
I EFKEAF LFDKDGDG + + T L + P
Sbjct: 8 QIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPE 67
Query: 56 FLIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEE 103
FL + E KEAFR+FDKDG+G I+ EL VM +LG+ +EE+ +M+ E
Sbjct: 68 FLNLMARKMKDTDSEEELKEAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIRE 127
Query: 104 VDINGKKAGNY 114
D++G NY
Sbjct: 128 ADVDGDGQVNY 138
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 33/108 (30%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF--------------- 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G IDF
Sbjct: 21 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD 80
Query: 188 --------------NGDGYFSFEEFVEIVYNMGATTEEKTADQEEKEL 221
+G+G+ S E ++ N+G EK D+E E+
Sbjct: 81 SEEELKEAFRVFDKDGNGFISAAELRHVMTNLG----EKLTDEEVDEM 124
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E KEAFR+FDKDG+G + A R T E E R D D
Sbjct: 84 ELKEAFRVFDKDGNGFISAAELRHVMTNLGEKLTDE------------EVDEMIREADVD 131
Query: 72 GDGSITKEELGRVMRS 87
GDG + EE +VM +
Sbjct: 132 GDGQVNYEEFVQVMMA 147
>pdb|3SG2|A Chain A, Crystal Structure Of Gcamp2-T116v,D381y
Length = 449
Score = 111 bits (277), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 88/145 (60%), Gaps = 8/145 (5%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G ++
Sbjct: 310 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 369
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
A K+ GYISA++LR V+ LGE L++EE+++MI+E
Sbjct: 370 LTMMARKMKYTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 429
Query: 178 DVDGDGRIDFNGDGYFSFEEFVEIV 202
D+DGDG+++ +EEFV+++
Sbjct: 430 DIDGDGQVN--------YEEFVQMM 446
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 62/130 (47%), Gaps = 26/130 (20%)
Query: 11 IVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPVF 56
I EFKEAF LFDKDGDG + + T L + P F
Sbjct: 310 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 369
Query: 57 LIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEV 104
L + E +EAFR+FDKDG+G I+ EL VM +LG+ +EE+ +M+ E
Sbjct: 370 LTMMARKMKYTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 429
Query: 105 DINGKKAGNY 114
DI+G NY
Sbjct: 430 DIDGDGQVNY 439
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 33/108 (30%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF--------------- 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G IDF
Sbjct: 322 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKYTD 381
Query: 188 --------------NGDGYFSFEEFVEIVYNMGATTEEKTADQEEKEL 221
+G+GY S E ++ N+G EK D+E E+
Sbjct: 382 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLG----EKLTDEEVDEM 425
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+FDKDG+G + A R T E E R D D
Sbjct: 385 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE------------EVDEMIREADID 432
Query: 72 GDGSITKEELGRVMRS 87
GDG + EE ++M +
Sbjct: 433 GDGQVNYEEFVQMMTA 448
>pdb|1AHR|A Chain A, Calmodulin Mutant With A Two Residue Deletion In The
Central Helix
Length = 146
Score = 110 bits (276), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 88/147 (59%), Gaps = 10/147 (6%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G G
Sbjct: 9 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGN--GTIDFP 66
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
+ + K+ G+ISA++LR V+ LGE L++EE+++MI+E
Sbjct: 67 EFLTMMARKMKDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREA 126
Query: 178 DVDGDGRIDFNGDGYFSFEEFVEIVYN 204
D+DGDG++ ++EEFV ++ +
Sbjct: 127 DIDGDGQV--------NYEEFVTMMTS 145
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 62/128 (48%), Gaps = 24/128 (18%)
Query: 11 IVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPVF 56
I EFKEAF LFDKDGDG + + T L + P F
Sbjct: 9 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 68
Query: 57 LIV----------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDI 106
L + E +EAFR+FDKDG+G I+ EL VM +LG+ +EE+ +M+ E DI
Sbjct: 69 LTMMARKMKDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADI 128
Query: 107 NGKKAGNY 114
+G NY
Sbjct: 129 DGDGQVNY 136
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 31/106 (29%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF--------------- 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G IDF
Sbjct: 21 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDSE 80
Query: 188 ------------NGDGYFSFEEFVEIVYNMGATTEEKTADQEEKEL 221
+G+G+ S E ++ N+G EK D+E E+
Sbjct: 81 EEIREAFRVFDKDGNGFISAAELRHVMTNLG----EKLTDEEVDEM 122
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 32/76 (42%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+FDKDG+G + A R T E E R D D
Sbjct: 82 EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDE------------EVDEMIREADID 129
Query: 72 GDGSITKEELGRVMRS 87
GDG + EE +M S
Sbjct: 130 GDGQVNYEEFVTMMTS 145
>pdb|3SG5|A Chain A, Crystal Structure Of Dimeric Gcamp3-D380y, Qp(Linker 1),
Lp(Linker 2)
Length = 448
Score = 110 bits (276), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 88/145 (60%), Gaps = 8/145 (5%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G ++
Sbjct: 309 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEF 368
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
A K+ GYISA++LR V+ LGE L++EE+++MI+E
Sbjct: 369 LTMMARKMKYTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 428
Query: 178 DVDGDGRIDFNGDGYFSFEEFVEIV 202
D+DGDG+++ +EEFV+++
Sbjct: 429 DIDGDGQVN--------YEEFVQMM 445
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 62/130 (47%), Gaps = 26/130 (20%)
Query: 11 IVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPVF 56
I EFKEAF LFDKDGDG + + T L + P F
Sbjct: 309 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEF 368
Query: 57 LIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEV 104
L + E +EAFR+FDKDG+G I+ EL VM +LG+ +EE+ +M+ E
Sbjct: 369 LTMMARKMKYTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 428
Query: 105 DINGKKAGNY 114
DI+G NY
Sbjct: 429 DIDGDGQVNY 438
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 33/108 (30%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF--------------- 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DGDG IDF
Sbjct: 321 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLTMMARKMKYTD 380
Query: 188 --------------NGDGYFSFEEFVEIVYNMGATTEEKTADQEEKEL 221
+G+GY S E ++ N+G EK D+E E+
Sbjct: 381 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLG----EKLTDEEVDEM 424
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+FDKDG+G + A R T E E R D D
Sbjct: 384 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE------------EVDEMIREADID 431
Query: 72 GDGSITKEELGRVMRS 87
GDG + EE ++M +
Sbjct: 432 GDGQVNYEEFVQMMTA 447
>pdb|3SG4|A Chain A, Crystal Structure Of Gcamp3-D380y, Lp(Linker 2)
Length = 448
Score = 110 bits (275), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 88/145 (60%), Gaps = 8/145 (5%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G ++
Sbjct: 309 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEF 368
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
A K+ GYISA++LR V+ LGE L++EE+++MI+E
Sbjct: 369 LTMMARKMKYTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 428
Query: 178 DVDGDGRIDFNGDGYFSFEEFVEIV 202
D+DGDG+++ +EEFV+++
Sbjct: 429 DIDGDGQVN--------YEEFVQMM 445
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 62/130 (47%), Gaps = 26/130 (20%)
Query: 11 IVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPVF 56
I EFKEAF LFDKDGDG + + T L + P F
Sbjct: 309 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEF 368
Query: 57 LIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEV 104
L + E +EAFR+FDKDG+G I+ EL VM +LG+ +EE+ +M+ E
Sbjct: 369 LTMMARKMKYTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 428
Query: 105 DINGKKAGNY 114
DI+G NY
Sbjct: 429 DIDGDGQVNY 438
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 33/108 (30%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF--------------- 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DGDG IDF
Sbjct: 321 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLTMMARKMKYTD 380
Query: 188 --------------NGDGYFSFEEFVEIVYNMGATTEEKTADQEEKEL 221
+G+GY S E ++ N+G EK D+E E+
Sbjct: 381 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLG----EKLTDEEVDEM 424
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+FDKDG+G + A R T E E R D D
Sbjct: 384 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE------------EVDEMIREADID 431
Query: 72 GDGSITKEELGRVMRS 87
GDG + EE ++M +
Sbjct: 432 GDGQVNYEEFVQMMTA 447
>pdb|1Y0V|H Chain H, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|I Chain I, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|J Chain J, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|K Chain K, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|L Chain L, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|M Chain M, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
Length = 146
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 88/145 (60%), Gaps = 8/145 (5%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G ++
Sbjct: 7 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 66
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
A K+ GYISA++LR V+ LGE L++EE+++MI+E
Sbjct: 67 LTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 126
Query: 178 DVDGDGRIDFNGDGYFSFEEFVEIV 202
D+DGDG++ ++EEFV+++
Sbjct: 127 DIDGDGQV--------NYEEFVQMM 143
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 62/130 (47%), Gaps = 26/130 (20%)
Query: 11 IVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPVF 56
I EFKEAF LFDKDGDG + + T L + P F
Sbjct: 7 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 66
Query: 57 LIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEV 104
L + E +EAFR+FDKDG+G I+ EL VM +LG+ +EE+ +M+ E
Sbjct: 67 LTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 126
Query: 105 DINGKKAGNY 114
DI+G NY
Sbjct: 127 DIDGDGQVNY 136
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 33/108 (30%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF--------------- 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G IDF
Sbjct: 19 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTD 78
Query: 188 --------------NGDGYFSFEEFVEIVYNMGATTEEKTADQEEKEL 221
+G+GY S E ++ N+G EK D+E E+
Sbjct: 79 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLG----EKLTDEEVDEM 122
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+FDKDG+G + A R T E E R D D
Sbjct: 82 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE------------EVDEMIREADID 129
Query: 72 GDGSITKEELGRVMRS 87
GDG + EE ++M +
Sbjct: 130 GDGQVNYEEFVQMMTA 145
>pdb|3SG3|A Chain A, Crystal Structure Of Gcamp3-D380y
Length = 449
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 88/145 (60%), Gaps = 8/145 (5%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G ++
Sbjct: 310 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEF 369
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
A K+ GYISA++LR V+ LGE L++EE+++MI+E
Sbjct: 370 LTMMARKMKYTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 429
Query: 178 DVDGDGRIDFNGDGYFSFEEFVEIV 202
D+DGDG+++ +EEFV+++
Sbjct: 430 DIDGDGQVN--------YEEFVQMM 446
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 62/130 (47%), Gaps = 26/130 (20%)
Query: 11 IVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPVF 56
I EFKEAF LFDKDGDG + + T L + P F
Sbjct: 310 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEF 369
Query: 57 LIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEV 104
L + E +EAFR+FDKDG+G I+ EL VM +LG+ +EE+ +M+ E
Sbjct: 370 LTMMARKMKYTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 429
Query: 105 DINGKKAGNY 114
DI+G NY
Sbjct: 430 DIDGDGQVNY 439
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 33/108 (30%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF--------------- 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DGDG IDF
Sbjct: 322 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLTMMARKMKYTD 381
Query: 188 --------------NGDGYFSFEEFVEIVYNMGATTEEKTADQEEKEL 221
+G+GY S E ++ N+G EK D+E E+
Sbjct: 382 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLG----EKLTDEEVDEM 425
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+FDKDG+G + A R T E E R D D
Sbjct: 385 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE------------EVDEMIREADID 432
Query: 72 GDGSITKEELGRVMRS 87
GDG + EE ++M +
Sbjct: 433 GDGQVNYEEFVQMMTA 448
>pdb|1CDM|A Chain A, Modulation Of Calmodulin Plasticity In Molecular
Recognition On The Basis Of X-Ray Structures
Length = 144
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 88/145 (60%), Gaps = 8/145 (5%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G ++
Sbjct: 6 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 65
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
A K+ GYISA++LR V+ LGE L++EE+++MI+E
Sbjct: 66 LTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 125
Query: 178 DVDGDGRIDFNGDGYFSFEEFVEIV 202
D+DGDG++ ++EEFV+++
Sbjct: 126 DIDGDGQV--------NYEEFVQMM 142
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 62/131 (47%), Gaps = 26/131 (19%)
Query: 10 SIVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPV 55
I EFKEAF LFDKDGDG + + T L + P
Sbjct: 5 QIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPE 64
Query: 56 FLIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEE 103
FL + E +EAFR+FDKDG+G I+ EL VM +LG+ +EE+ +M+ E
Sbjct: 65 FLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIRE 124
Query: 104 VDINGKKAGNY 114
DI+G NY
Sbjct: 125 ADIDGDGQVNY 135
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 33/108 (30%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF--------------- 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G IDF
Sbjct: 18 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTD 77
Query: 188 --------------NGDGYFSFEEFVEIVYNMGATTEEKTADQEEKEL 221
+G+GY S E ++ N+G EK D+E E+
Sbjct: 78 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLG----EKLTDEEVDEM 121
Score = 34.7 bits (78), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+FDKDG+G + A R T E E R D D
Sbjct: 81 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE------------EVDEMIREADID 128
Query: 72 GDGSITKEELGRVMRS 87
GDG + EE ++M +
Sbjct: 129 GDGQVNYEEFVQMMTA 144
>pdb|4DJC|A Chain A, 1.35 A Crystal Structure Of The Nav1.5 Diii-Iv-CaCAM
COMPLEX
Length = 152
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 88/145 (60%), Gaps = 8/145 (5%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G ++
Sbjct: 13 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 72
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
A K+ GYISA++LR V+ LGE L++EE+++MI+E
Sbjct: 73 LTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 132
Query: 178 DVDGDGRIDFNGDGYFSFEEFVEIV 202
D+DGDG++ ++EEFV+++
Sbjct: 133 DIDGDGQV--------NYEEFVQMM 149
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 62/130 (47%), Gaps = 26/130 (20%)
Query: 11 IVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPVF 56
I EFKEAF LFDKDGDG + + T L + P F
Sbjct: 13 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 72
Query: 57 LIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEV 104
L + E +EAFR+FDKDG+G I+ EL VM +LG+ +EE+ +M+ E
Sbjct: 73 LTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 132
Query: 105 DINGKKAGNY 114
DI+G NY
Sbjct: 133 DIDGDGQVNY 142
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 33/108 (30%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF--------------- 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G IDF
Sbjct: 25 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTD 84
Query: 188 --------------NGDGYFSFEEFVEIVYNMGATTEEKTADQEEKEL 221
+G+GY S E ++ N+G EK D+E E+
Sbjct: 85 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLG----EKLTDEEVDEM 128
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+FDKDG+G + A R T E E R D D
Sbjct: 88 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE------------EVDEMIREADID 135
Query: 72 GDGSITKEELGRVMRS 87
GDG + EE ++M +
Sbjct: 136 GDGQVNYEEFVQMMTA 151
>pdb|3EWT|A Chain A, Crystal Structure Of Calmodulin Complexed With A Peptide
pdb|3EWV|A Chain A, Crystal Structure Of Calmodulin Complexed With A Peptide
Length = 154
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 88/145 (60%), Gaps = 8/145 (5%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G ++
Sbjct: 15 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 74
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
A K+ GYISA++LR V+ LGE L++EE+++MI+E
Sbjct: 75 LTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 134
Query: 178 DVDGDGRIDFNGDGYFSFEEFVEIV 202
D+DGDG++ ++EEFV+++
Sbjct: 135 DIDGDGQV--------NYEEFVQMM 151
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 62/131 (47%), Gaps = 26/131 (19%)
Query: 10 SIVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPV 55
I EFKEAF LFDKDGDG + + T L + P
Sbjct: 14 QIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPE 73
Query: 56 FLIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEE 103
FL + E +EAFR+FDKDG+G I+ EL VM +LG+ +EE+ +M+ E
Sbjct: 74 FLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIRE 133
Query: 104 VDINGKKAGNY 114
DI+G NY
Sbjct: 134 ADIDGDGQVNY 144
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 33/108 (30%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF--------------- 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G IDF
Sbjct: 27 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTD 86
Query: 188 --------------NGDGYFSFEEFVEIVYNMGATTEEKTADQEEKEL 221
+G+GY S E ++ N+G EK D+E E+
Sbjct: 87 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLG----EKLTDEEVDEM 130
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+FDKDG+G + A R T E E R D D
Sbjct: 90 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE------------EVDEMIREADID 137
Query: 72 GDGSITKEELGRVMRS 87
GDG + EE ++M +
Sbjct: 138 GDGQVNYEEFVQMMTA 153
>pdb|1CM1|A Chain A, Motions Of Calmodulin-Single-Conformer Refinement
pdb|1CM4|A Chain A, Motions Of Calmodulin-four-conformer Refinement
pdb|1CKK|A Chain A, CalmodulinRAT CA2+CALMODULIN DEPENDENT PROTEIN KINASE
Fragment
pdb|1CFF|A Chain A, Nmr Solution Structure Of A Complex Of Calmodulin With A
Binding Peptide Of The Ca2+-Pump
pdb|1QIV|A Chain A, Calmodulin Complexed With
N-(3,3,-Diphenylpropyl)-N'-[1-R-(
3,4-Bis-Butoxyphenyl)-Ethyl]-Propylenediamine (Dpd), 1:2
Complex
pdb|1QIW|A Chain A, Calmodulin Complexed With
N-(3,3,-Diphenylpropyl)-N'-[1-R-(
3,4-Bis-Butoxyphenyl)-Ethyl]-Propylenediamine (Dpd)
pdb|1QIW|B Chain B, Calmodulin Complexed With
N-(3,3,-Diphenylpropyl)-N'-[1-R-(
3,4-Bis-Butoxyphenyl)-Ethyl]-Propylenediamine (Dpd)
pdb|1G4Y|R Chain R, 1.60 A Crystal Structure Of The Gating Domain From Small
Conductance Potassium Channel Complexed With
Calcium-Calmodulin
pdb|1K90|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
3' Deoxy-Atp
pdb|1K90|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
3' Deoxy-Atp
pdb|1K90|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
3' Deoxy-Atp
pdb|1IWQ|A Chain A, Crystal Structure Of Marcks Calmodulin Binding Domain
Peptide Complexed With Ca2+CALMODULIN
pdb|1NWD|A Chain A, Solution Structure Of Ca2+CALMODULIN BOUND TO THE C-
Terminal Domain Of Petunia Glutamate Decarboxylase
pdb|1L7Z|A Chain A, Crystal Structure Of Ca2+/calmodulin Complexed With
Myristoylated Cap-23/nap-22 Peptide
pdb|1S26|D Chain D, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1S26|E Chain E, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1S26|F Chain F, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1SK6|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
pdb|1SK6|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
pdb|1SK6|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
pdb|1QX5|D Chain D, Crystal Structure Of Apocalmodulin
pdb|1QX5|I Chain I, Crystal Structure Of Apocalmodulin
pdb|1QX5|B Chain B, Crystal Structure Of Apocalmodulin
pdb|1QX5|J Chain J, Crystal Structure Of Apocalmodulin
pdb|1QX5|K Chain K, Crystal Structure Of Apocalmodulin
pdb|1QX5|T Chain T, Crystal Structure Of Apocalmodulin
pdb|1QX5|R Chain R, Crystal Structure Of Apocalmodulin
pdb|1QX5|Y Chain Y, Crystal Structure Of Apocalmodulin
pdb|1XA5|A Chain A, Structure Of Calmodulin In Complex With Kar-2, A Bis-Indol
Alkaloid
pdb|1SY9|A Chain A, Structure Of Calmodulin Complexed With A Fragment Of The
Olfactory Cng Channel
pdb|2F3Y|A Chain A, CalmodulinIQ DOMAIN COMPLEX
pdb|2F3Z|A Chain A, CalmodulinIQ-Aa Domain Complex
pdb|1X02|A Chain A, Solution Structure Of Stereo Array Isotope Labeled (Sail)
Calmodulin
pdb|2DFS|B Chain B, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|C Chain C, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|D Chain D, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|E Chain E, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|F Chain F, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|G Chain G, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|N Chain N, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|O Chain O, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|P Chain P, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|Q Chain Q, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|R Chain R, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|S Chain S, 3-D Structure Of Myosin-V Inhibited State
pdb|1YR5|A Chain A, 1.7-A Structure Of Calmodulin Bound To A Peptide From Dap
Kinase
pdb|2FOT|A Chain A, Crystal Structure Of The Complex Between Calmodulin And
Alphaii-Spectrin
pdb|2BCX|A Chain A, Crystal Structure Of Calmodulin In Complex With A
Ryanodine Receptor Peptide
pdb|1A29|A Chain A, Calmodulin Complexed With Trifluoperazine (1:2 Complex)
pdb|1CFC|A Chain A, Calcium-Free Calmodulin
pdb|1CFD|A Chain A, Calcium-Free Calmodulin
pdb|1CLL|A Chain A, Calmodulin Structure Refined At 1.7 Angstroms Resolution
pdb|1CTR|A Chain A, Drug Binding By Calmodulin: Crystal Structure Of A
Calmodulin-Trifluoperazine Complex
pdb|1LIN|A Chain A, Calmodulin Complexed With Trifluoperazine (1:4 Complex)
pdb|1MUX|A Chain A, Solution Nmr Structure Of CalmodulinW-7 Complex: The Basis
Of Diversity In Molecular Recognition, 30 Structures
pdb|2HQW|A Chain A, Crystal Structure Of Ca2+CALMODULIN BOUND TO NMDA RECEPTOR
NR1C1 Peptide
pdb|2O5G|A Chain A, Calmodulin-Smooth Muscle Light Chain Kinase Peptide
Complex
pdb|2O60|A Chain A, Calmodulin Bound To Peptide From Neuronal Nitric Oxide
Synthase
pdb|3BXK|A Chain A, Crystal Structure Of The PQ-Type Calcium Channel (Cav2.1)
Iq Domain And Ca2+calmodulin Complex
pdb|3BXK|C Chain C, Crystal Structure Of The PQ-Type Calcium Channel (Cav2.1)
Iq Domain And Ca2+calmodulin Complex
pdb|3BXL|A Chain A, Crystal Structure Of The R-Type Calcium Channel (Cav2.3)
Iq Domain And Ca2+calmodulin Complex
pdb|2K0E|A Chain A, A Coupled Equilibrium Shift Mechanism In Calmodulin-
Mediated Signal Transduction
pdb|2K0F|A Chain A, Calmodulin Complexed With Calmodulin-Binding Peptide From
Smooth Muscle Myosin Light Chain Kinase
pdb|3DVE|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.2 Iq Domain Complex
pdb|3DVJ|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.2 Iq Domain (Without
Cloning Artifact, Hm To Tv) Complex
pdb|3DVK|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.3 Iq Domain Complex
pdb|3DVM|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.1 Iq Domain Complex
pdb|2JZI|A Chain A, Structure Of Calmodulin Complexed With The Calmodulin
Binding Domain Of Calcineurin
pdb|3BYA|A Chain A, Structure Of A Calmodulin Complex
pdb|3G43|A Chain A, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|3G43|B Chain B, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|3G43|C Chain C, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|3G43|D Chain D, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|2KNE|A Chain A, Calmodulin Wraps Around Its Binding Domain In The Plasma
Membrane Ca2+ Pump Anchored By A Novel 18-1 Motif
pdb|2KDU|A Chain A, Structural Basis Of The Munc13-1CA2+-Calmodulin
Interaction: A Novel 1-26 Calmodulin Binding Motif With
A Bipartite Binding Mode
pdb|2X0G|B Chain B, X-ray Structure Of A Dap-kinase Calmodulin Complex
pdb|3GOF|A Chain A, Calmodulin Bound To Peptide From Macrophage Nitric Oxide
Synthase
pdb|3GOF|B Chain B, Calmodulin Bound To Peptide From Macrophage Nitric Oxide
Synthase
pdb|3IF7|A Chain A, Structure Of Calmodulin Complexed With Its First
Endogenous Inhibitor, Sphingosylphosphorylcholine
pdb|2L53|A Chain A, Solution Nmr Structure Of Apo-Calmodulin In Complex With
The Iq Motif Of Human Cardiac Sodium Channel Nav1.5
pdb|2L7L|A Chain A, Solution Structure Of Ca2+CALMODULIN COMPLEXED WITH A
PEPTIDE Representing The Calmodulin-Binding Domain Of
Calmodulin Kinase I
pdb|2LL6|A Chain A, Solution Nmr Structure Of Cam Bound To Inos Cam Binding
Domain Peptide
pdb|2LL7|A Chain A, Solution Nmr Structure Of Cam Bound To The Enos Cam
Binding Domain Peptide
pdb|4EHQ|A Chain A, Crystal Structure Of Calmodulin Binding Domain Of Orai1 In
Complex With Ca2+CALMODULIN DISPLAYS A UNIQUE BINDING
MODE
Length = 148
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 88/145 (60%), Gaps = 8/145 (5%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G ++
Sbjct: 9 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 68
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
A K+ GYISA++LR V+ LGE L++EE+++MI+E
Sbjct: 69 LTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 128
Query: 178 DVDGDGRIDFNGDGYFSFEEFVEIV 202
D+DGDG++ ++EEFV+++
Sbjct: 129 DIDGDGQV--------NYEEFVQMM 145
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 62/131 (47%), Gaps = 26/131 (19%)
Query: 10 SIVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPV 55
I EFKEAF LFDKDGDG + + T L + P
Sbjct: 8 QIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPE 67
Query: 56 FLIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEE 103
FL + E +EAFR+FDKDG+G I+ EL VM +LG+ +EE+ +M+ E
Sbjct: 68 FLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIRE 127
Query: 104 VDINGKKAGNY 114
DI+G NY
Sbjct: 128 ADIDGDGQVNY 138
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 33/108 (30%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF--------------- 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G IDF
Sbjct: 21 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTD 80
Query: 188 --------------NGDGYFSFEEFVEIVYNMGATTEEKTADQEEKEL 221
+G+GY S E ++ N+G EK D+E E+
Sbjct: 81 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLG----EKLTDEEVDEM 124
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+FDKDG+G + A R T E E R D D
Sbjct: 84 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE------------EVDEMIREADID 131
Query: 72 GDGSITKEELGRVMRS 87
GDG + EE ++M +
Sbjct: 132 GDGQVNYEEFVQMMTA 147
>pdb|2YGG|B Chain B, Complex Of Cambr And Cam
Length = 150
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 88/145 (60%), Gaps = 8/145 (5%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G ++
Sbjct: 10 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 69
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
A K+ GYISA++LR V+ LGE L++EE+++MI+E
Sbjct: 70 LTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 129
Query: 178 DVDGDGRIDFNGDGYFSFEEFVEIV 202
D+DGDG++ ++EEFV+++
Sbjct: 130 DIDGDGQV--------NYEEFVQMM 146
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 62/131 (47%), Gaps = 26/131 (19%)
Query: 10 SIVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPV 55
I EFKEAF LFDKDGDG + + T L + P
Sbjct: 9 QIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPE 68
Query: 56 FLIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEE 103
FL + E +EAFR+FDKDG+G I+ EL VM +LG+ +EE+ +M+ E
Sbjct: 69 FLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIRE 128
Query: 104 VDINGKKAGNY 114
DI+G NY
Sbjct: 129 ADIDGDGQVNY 139
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 33/108 (30%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF--------------- 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G IDF
Sbjct: 22 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTD 81
Query: 188 --------------NGDGYFSFEEFVEIVYNMGATTEEKTADQEEKEL 221
+G+GY S E ++ N+G EK D+E E+
Sbjct: 82 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLG----EKLTDEEVDEM 125
Score = 34.7 bits (78), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+FDKDG+G + A R T E E R D D
Sbjct: 85 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE------------EVDEMIREADID 132
Query: 72 GDGSITKEELGRVMRS 87
GDG + EE ++M +
Sbjct: 133 GDGQVNYEEFVQMMTA 148
>pdb|1IQ5|A Chain A, CalmodulinNEMATODE CA2+CALMODULIN DEPENDENT KINASE KINASE
Fragment
pdb|1LVC|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
2' Deoxy, 3' Anthraniloyl Atp
pdb|1LVC|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
2' Deoxy, 3' Anthraniloyl Atp
pdb|1LVC|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
2' Deoxy, 3' Anthraniloyl Atp
pdb|2BKI|B Chain B, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
pdb|2BKI|D Chain D, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
pdb|1WRZ|A Chain A, Calmodulin Complexed With A Peptide From A Human
Death-Associated Protein Kinase
pdb|2V01|A Chain A, Recombinant Vertebrate Calmodulin Complexed With Pb
pdb|2V02|A Chain A, Recombinant Vertebrate Calmodulin Complexed With Ba
pdb|2R28|A Chain A, The Complex Structure Of Calmodulin Bound To A Calcineurin
Peptide
pdb|2R28|B Chain B, The Complex Structure Of Calmodulin Bound To A Calcineurin
Peptide
pdb|2W73|A Chain A, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|2W73|B Chain B, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|2W73|E Chain E, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|2W73|F Chain F, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|3HR4|B Chain B, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|D Chain D, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|F Chain F, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|H Chain H, Human Inos Reductase And Calmodulin Complex
pdb|3OXQ|A Chain A, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|3OXQ|B Chain B, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|3OXQ|C Chain C, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|3OXQ|D Chain D, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|2Y4V|A Chain A, Crystal Structure Of Human Calmodulin In Complex With A
Dap Kinase-1 Mutant (W305y) Peptide
pdb|3SJQ|A Chain A, Crystal Structure Of A Small Conductance Potassium Channel
Splice Variant Complexed With Calcium-Calmodulin
pdb|3SJQ|B Chain B, Crystal Structure Of A Small Conductance Potassium Channel
Splice Variant Complexed With Calcium-Calmodulin
pdb|4DCK|B Chain B, Crystal Structure Of The C-Terminus Of Voltage-Gated
Sodium Channel In Complex With Fgf13 And Cam
pdb|3SUI|A Chain A, Crystal Structure Of Ca2+-Calmodulin In Complex With A
Trpv1 C- Terminal Peptide
pdb|4G27|R Chain R, Calcium-Calmodulin Complexed With The Calmodulin Binding
Domain From A Small Conductance Potassium Channel Splice
Variant And Phenylurea
pdb|4G28|R Chain R, Calcium-Calmodulin Complexed With The Calmodulin Binding
Domain From A Small Conductance Potassium Channel Splice
Variant And Ebio-1
Length = 149
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 88/145 (60%), Gaps = 8/145 (5%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G ++
Sbjct: 10 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 69
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
A K+ GYISA++LR V+ LGE L++EE+++MI+E
Sbjct: 70 LTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 129
Query: 178 DVDGDGRIDFNGDGYFSFEEFVEIV 202
D+DGDG++ ++EEFV+++
Sbjct: 130 DIDGDGQV--------NYEEFVQMM 146
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 62/131 (47%), Gaps = 26/131 (19%)
Query: 10 SIVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPV 55
I EFKEAF LFDKDGDG + + T L + P
Sbjct: 9 QIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPE 68
Query: 56 FLIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEE 103
FL + E +EAFR+FDKDG+G I+ EL VM +LG+ +EE+ +M+ E
Sbjct: 69 FLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIRE 128
Query: 104 VDINGKKAGNY 114
DI+G NY
Sbjct: 129 ADIDGDGQVNY 139
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 33/108 (30%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF--------------- 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G IDF
Sbjct: 22 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTD 81
Query: 188 --------------NGDGYFSFEEFVEIVYNMGATTEEKTADQEEKEL 221
+G+GY S E ++ N+G EK D+E E+
Sbjct: 82 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLG----EKLTDEEVDEM 125
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+FDKDG+G + A R T E E R D D
Sbjct: 85 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE------------EVDEMIREADID 132
Query: 72 GDGSITKEELGRVMRS 87
GDG + EE ++M +
Sbjct: 133 GDGQVNYEEFVQMMTA 148
>pdb|1K93|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
pdb|1K93|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
pdb|1K93|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
Length = 144
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 88/145 (60%), Gaps = 8/145 (5%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G ++
Sbjct: 5 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 64
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
A K+ GYISA++LR V+ LGE L++EE+++MI+E
Sbjct: 65 LTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 124
Query: 178 DVDGDGRIDFNGDGYFSFEEFVEIV 202
D+DGDG++ ++EEFV+++
Sbjct: 125 DIDGDGQV--------NYEEFVQMM 141
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 62/131 (47%), Gaps = 26/131 (19%)
Query: 10 SIVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPV 55
I EFKEAF LFDKDGDG + + T L + P
Sbjct: 4 QIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPE 63
Query: 56 FLIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEE 103
FL + E +EAFR+FDKDG+G I+ EL VM +LG+ +EE+ +M+ E
Sbjct: 64 FLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIRE 123
Query: 104 VDINGKKAGNY 114
DI+G NY
Sbjct: 124 ADIDGDGQVNY 134
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 33/108 (30%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF--------------- 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G IDF
Sbjct: 17 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTD 76
Query: 188 --------------NGDGYFSFEEFVEIVYNMGATTEEKTADQEEKEL 221
+G+GY S E ++ N+G EK D+E E+
Sbjct: 77 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLG----EKLTDEEVDEM 120
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+FDKDG+G + A R T E E R D D
Sbjct: 80 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE------------EVDEMIREADID 127
Query: 72 GDGSITKEELGRVMRS 87
GDG + EE ++M +
Sbjct: 128 GDGQVNYEEFVQMMTA 143
>pdb|2WEL|D Chain D, Crystal Structure Of Su6656-Bound CalciumCALMODULIN-
Dependent Protein Kinase Ii Delta In Complex With
Calmodulin
Length = 150
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 88/145 (60%), Gaps = 8/145 (5%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G ++
Sbjct: 11 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 70
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
A K+ GYISA++LR V+ LGE L++EE+++MI+E
Sbjct: 71 LTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 130
Query: 178 DVDGDGRIDFNGDGYFSFEEFVEIV 202
D+DGDG++ ++EEFV+++
Sbjct: 131 DIDGDGQV--------NYEEFVQMM 147
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 62/130 (47%), Gaps = 26/130 (20%)
Query: 11 IVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPVF 56
I EFKEAF LFDKDGDG + + T L + P F
Sbjct: 11 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 70
Query: 57 LIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEV 104
L + E +EAFR+FDKDG+G I+ EL VM +LG+ +EE+ +M+ E
Sbjct: 71 LTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 130
Query: 105 DINGKKAGNY 114
DI+G NY
Sbjct: 131 DIDGDGQVNY 140
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 33/108 (30%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF--------------- 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G IDF
Sbjct: 23 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTD 82
Query: 188 --------------NGDGYFSFEEFVEIVYNMGATTEEKTADQEEKEL 221
+G+GY S E ++ N+G EK D+E E+
Sbjct: 83 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLG----EKLTDEEVDEM 126
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+FDKDG+G + A R T E E R D D
Sbjct: 86 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE------------EVDEMIREADID 133
Query: 72 GDGSITKEELGRVMRS 87
GDG + EE ++M +
Sbjct: 134 GDGQVNYEEFVQMMTA 149
>pdb|2VAY|A Chain A, Calmodulin Complexed With Cav1.1 Iq Peptide
pdb|2LGF|A Chain A, Solution Structure Of Ca2+CALMODULIN COMPLEXED WITH A
PEPTIDE Representing The Calmodulin-Binding Domain Of
L-Selectin
Length = 146
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 88/145 (60%), Gaps = 8/145 (5%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G ++
Sbjct: 7 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 66
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
A K+ GYISA++LR V+ LGE L++EE+++MI+E
Sbjct: 67 LTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 126
Query: 178 DVDGDGRIDFNGDGYFSFEEFVEIV 202
D+DGDG++ ++EEFV+++
Sbjct: 127 DIDGDGQV--------NYEEFVQMM 143
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 62/131 (47%), Gaps = 26/131 (19%)
Query: 10 SIVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPV 55
I EFKEAF LFDKDGDG + + T L + P
Sbjct: 6 QIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPE 65
Query: 56 FLIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEE 103
FL + E +EAFR+FDKDG+G I+ EL VM +LG+ +EE+ +M+ E
Sbjct: 66 FLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIRE 125
Query: 104 VDINGKKAGNY 114
DI+G NY
Sbjct: 126 ADIDGDGQVNY 136
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 33/108 (30%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF--------------- 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G IDF
Sbjct: 19 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTD 78
Query: 188 --------------NGDGYFSFEEFVEIVYNMGATTEEKTADQEEKEL 221
+G+GY S E ++ N+G EK D+E E+
Sbjct: 79 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLG----EKLTDEEVDEM 122
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+FDKDG+G + A R T E E R D D
Sbjct: 82 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE------------EVDEMIREADID 129
Query: 72 GDGSITKEELGRVMRS 87
GDG + EE ++M +
Sbjct: 130 GDGQVNYEEFVQMMTA 145
>pdb|1CDL|A Chain A, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1CDL|B Chain B, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1CDL|C Chain C, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1CDL|D Chain D, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1PK0|D Chain D, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|1PK0|E Chain E, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|1PK0|F Chain F, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|3GP2|A Chain A, Calmodulin Bound To Peptide From Calmodulin Kinase Ii
(Camkii)
Length = 147
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 88/145 (60%), Gaps = 8/145 (5%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G ++
Sbjct: 9 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 68
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
A K+ GYISA++LR V+ LGE L++EE+++MI+E
Sbjct: 69 LTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 128
Query: 178 DVDGDGRIDFNGDGYFSFEEFVEIV 202
D+DGDG++ ++EEFV+++
Sbjct: 129 DIDGDGQV--------NYEEFVQMM 145
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 62/131 (47%), Gaps = 26/131 (19%)
Query: 10 SIVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPV 55
I EFKEAF LFDKDGDG + + T L + P
Sbjct: 8 QIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPE 67
Query: 56 FLIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEE 103
FL + E +EAFR+FDKDG+G I+ EL VM +LG+ +EE+ +M+ E
Sbjct: 68 FLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIRE 127
Query: 104 VDINGKKAGNY 114
DI+G NY
Sbjct: 128 ADIDGDGQVNY 138
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 33/108 (30%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF--------------- 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G IDF
Sbjct: 21 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTD 80
Query: 188 --------------NGDGYFSFEEFVEIVYNMGATTEEKTADQEEKEL 221
+G+GY S E ++ N+G EK D+E E+
Sbjct: 81 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLG----EKLTDEEVDEM 124
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+FDKDG+G + A R T E E R D D
Sbjct: 84 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE------------EVDEMIREADID 131
Query: 72 GDGSITKEELGRVMRS 87
GDG + EE ++M +
Sbjct: 132 GDGQVNYEEFVQMMTA 147
>pdb|1PRW|A Chain A, Crystal Structure Of Bovine Brain Ca++ Calmodulin In A
Compact Form
Length = 149
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 88/145 (60%), Gaps = 8/145 (5%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G ++
Sbjct: 10 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 69
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
A K+ GYISA++LR V+ LGE L++EE+++MI+E
Sbjct: 70 LTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEXLTDEEVDEMIREA 129
Query: 178 DVDGDGRIDFNGDGYFSFEEFVEIV 202
D+DGDG++ ++EEFV+++
Sbjct: 130 DIDGDGQV--------NYEEFVQMM 146
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 62/131 (47%), Gaps = 26/131 (19%)
Query: 10 SIVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPV 55
I EFKEAF LFDKDGDG + + T L + P
Sbjct: 9 QIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPE 68
Query: 56 FLIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEE 103
FL + E +EAFR+FDKDG+G I+ EL VM +LG+ +EE+ +M+ E
Sbjct: 69 FLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEXLTDEEVDEMIRE 128
Query: 104 VDINGKKAGNY 114
DI+G NY
Sbjct: 129 ADIDGDGQVNY 139
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 29/93 (31%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF--------------- 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G IDF
Sbjct: 22 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTD 81
Query: 188 --------------NGDGYFSFEEFVEIVYNMG 206
+G+GY S E ++ N+G
Sbjct: 82 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLG 114
Score = 34.3 bits (77), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+FDKDG+G + A R T E E R D D
Sbjct: 85 EIREAFRVFDKDGNGYISAAELRHVMTNLGEXLTDE------------EVDEMIREADID 132
Query: 72 GDGSITKEELGRVMRS 87
GDG + EE ++M +
Sbjct: 133 GDGQVNYEEFVQMMTA 148
>pdb|1UP5|A Chain A, Chicken Calmodulin
pdb|1UP5|B Chain B, Chicken Calmodulin
Length = 148
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 88/145 (60%), Gaps = 8/145 (5%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G ++
Sbjct: 9 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 68
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
A K+ GYISA++LR V+ LGE L++EE+++MI+E
Sbjct: 69 LTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEXLTDEEVDEMIREA 128
Query: 178 DVDGDGRIDFNGDGYFSFEEFVEIV 202
D+DGDG++ ++EEFV+++
Sbjct: 129 DIDGDGQV--------NYEEFVQMM 145
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 62/131 (47%), Gaps = 26/131 (19%)
Query: 10 SIVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPV 55
I EFKEAF LFDKDGDG + + T L + P
Sbjct: 8 QIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPE 67
Query: 56 FLIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEE 103
FL + E +EAFR+FDKDG+G I+ EL VM +LG+ +EE+ +M+ E
Sbjct: 68 FLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEXLTDEEVDEMIRE 127
Query: 104 VDINGKKAGNY 114
DI+G NY
Sbjct: 128 ADIDGDGQVNY 138
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 29/93 (31%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF--------------- 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G IDF
Sbjct: 21 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTD 80
Query: 188 --------------NGDGYFSFEEFVEIVYNMG 206
+G+GY S E ++ N+G
Sbjct: 81 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLG 113
Score = 34.3 bits (77), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+FDKDG+G + A R T E E R D D
Sbjct: 84 EIREAFRVFDKDGNGYISAAELRHVMTNLGEXLTDE------------EVDEMIREADID 131
Query: 72 GDGSITKEELGRVMRS 87
GDG + EE ++M +
Sbjct: 132 GDGQVNYEEFVQMMTA 147
>pdb|2BE6|A Chain A, 2.0 A Crystal Structure Of The Cav1.2 Iq Domain-CaCAM
COMPLEX
pdb|2BE6|B Chain B, 2.0 A Crystal Structure Of The Cav1.2 Iq Domain-CaCAM
COMPLEX
pdb|2BE6|C Chain C, 2.0 A Crystal Structure Of The Cav1.2 Iq Domain-CaCAM
COMPLEX
pdb|1ZUZ|A Chain A, Calmodulin In Complex With A Mutant Peptide From Human
Drp-1 Kinase
Length = 150
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 88/145 (60%), Gaps = 8/145 (5%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G ++
Sbjct: 10 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 69
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
A K+ GYISA++LR V+ LGE L++EE+++MI+E
Sbjct: 70 LTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 129
Query: 178 DVDGDGRIDFNGDGYFSFEEFVEIV 202
D+DGDG++ ++EEFV+++
Sbjct: 130 DIDGDGQV--------NYEEFVQMM 146
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 62/131 (47%), Gaps = 26/131 (19%)
Query: 10 SIVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPV 55
I EFKEAF LFDKDGDG + + T L + P
Sbjct: 9 QIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPE 68
Query: 56 FLIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEE 103
FL + E +EAFR+FDKDG+G I+ EL VM +LG+ +EE+ +M+ E
Sbjct: 69 FLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIRE 128
Query: 104 VDINGKKAGNY 114
DI+G NY
Sbjct: 129 ADIDGDGQVNY 139
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 33/108 (30%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF--------------- 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G IDF
Sbjct: 22 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTD 81
Query: 188 --------------NGDGYFSFEEFVEIVYNMGATTEEKTADQEEKEL 221
+G+GY S E ++ N+G EK D+E E+
Sbjct: 82 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLG----EKLTDEEVDEM 125
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+FDKDG+G + A R T E E R D D
Sbjct: 85 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE------------EVDEMIREADID 132
Query: 72 GDGSITKEELGRVMRS 87
GDG + EE ++M +
Sbjct: 133 GDGQVNYEEFVQMMTA 148
>pdb|4GOW|D Chain D, Crystal Structure Of Ca2+CAM:KV7.4 (KCNQ4) B HELIX COMPLEX
Length = 144
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 88/145 (60%), Gaps = 8/145 (5%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G ++
Sbjct: 7 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 66
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
A K+ GYISA++LR V+ LGE L++EE+++MI+E
Sbjct: 67 LTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 126
Query: 178 DVDGDGRIDFNGDGYFSFEEFVEIV 202
D+DGDG++ ++EEFV+++
Sbjct: 127 DIDGDGQV--------NYEEFVQMM 143
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 62/131 (47%), Gaps = 26/131 (19%)
Query: 10 SIVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPV 55
I EFKEAF LFDKDGDG + + T L + P
Sbjct: 6 QIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPE 65
Query: 56 FLIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEE 103
FL + E +EAFR+FDKDG+G I+ EL VM +LG+ +EE+ +M+ E
Sbjct: 66 FLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIRE 125
Query: 104 VDINGKKAGNY 114
DI+G NY
Sbjct: 126 ADIDGDGQVNY 136
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 33/108 (30%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF--------------- 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G IDF
Sbjct: 19 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTD 78
Query: 188 --------------NGDGYFSFEEFVEIVYNMGATTEEKTADQEEKEL 221
+G+GY S E ++ N+G EK D+E E+
Sbjct: 79 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLG----EKLTDEEVDEM 122
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 13/74 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+FDKDG+G + A R T E E R D D
Sbjct: 82 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE------------EVDEMIREADID 129
Query: 72 GDGSITKEELGRVM 85
GDG + EE ++M
Sbjct: 130 GDGQVNYEEFVQMM 143
>pdb|3EKH|A Chain A, Calcium-Saturated Gcamp2 T116vK378W MUTANT MONOMER
Length = 449
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 88/145 (60%), Gaps = 8/145 (5%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G ++
Sbjct: 310 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 369
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
A K+ GYISA++LR V+ LGE L++EE+++MI+E
Sbjct: 370 LTMMARWMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 429
Query: 178 DVDGDGRIDFNGDGYFSFEEFVEIV 202
D+DGDG+++ +EEFV+++
Sbjct: 430 DIDGDGQVN--------YEEFVQMM 446
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 62/130 (47%), Gaps = 26/130 (20%)
Query: 11 IVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPVF 56
I EFKEAF LFDKDGDG + + T L + P F
Sbjct: 310 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 369
Query: 57 LIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEV 104
L + E +EAFR+FDKDG+G I+ EL VM +LG+ +EE+ +M+ E
Sbjct: 370 LTMMARWMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 429
Query: 105 DINGKKAGNY 114
DI+G NY
Sbjct: 430 DIDGDGQVNY 439
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 14/84 (16%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G ID F EF+ ++
Sbjct: 322 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID--------FPEFLTMM 373
Query: 203 YNMGATTEEKTADQEEKELRDAFR 226
T+ E+E+R+AFR
Sbjct: 374 ARWMKDTD------SEEEIREAFR 391
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+FDKDG+G + A R T E E R D D
Sbjct: 385 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE------------EVDEMIREADID 432
Query: 72 GDGSITKEELGRVMRS 87
GDG + EE ++M +
Sbjct: 433 GDGQVNYEEFVQMMTA 448
>pdb|2IX7|A Chain A, Structure Of Apo-Calmodulin Bound To Unconventional Myosin
V
pdb|2IX7|B Chain B, Structure Of Apo-Calmodulin Bound To Unconventional Myosin
V
Length = 145
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 88/145 (60%), Gaps = 8/145 (5%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G ++
Sbjct: 8 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 67
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
A K+ GYISA++LR V+ LGE L++EE+++MI+E
Sbjct: 68 LTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 127
Query: 178 DVDGDGRIDFNGDGYFSFEEFVEIV 202
D+DGDG++ ++EEFV+++
Sbjct: 128 DIDGDGQV--------NYEEFVQMM 144
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 62/131 (47%), Gaps = 26/131 (19%)
Query: 10 SIVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPV 55
I EFKEAF LFDKDGDG + + T L + P
Sbjct: 7 QIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPE 66
Query: 56 FLIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEE 103
FL + E +EAFR+FDKDG+G I+ EL VM +LG+ +EE+ +M+ E
Sbjct: 67 FLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIRE 126
Query: 104 VDINGKKAGNY 114
DI+G NY
Sbjct: 127 ADIDGDGQVNY 137
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 33/108 (30%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF--------------- 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G IDF
Sbjct: 20 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTD 79
Query: 188 --------------NGDGYFSFEEFVEIVYNMGATTEEKTADQEEKEL 221
+G+GY S E ++ N+G EK D+E E+
Sbjct: 80 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLG----EKLTDEEVDEM 123
Score = 34.3 bits (77), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 13/74 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+FDKDG+G + A R T E E R D D
Sbjct: 83 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE------------EVDEMIREADID 130
Query: 72 GDGSITKEELGRVM 85
GDG + EE ++M
Sbjct: 131 GDGQVNYEEFVQMM 144
>pdb|2K0J|A Chain A, Solution Structure Of Cam Complexed To Drp1p
pdb|2K61|A Chain A, Solution Structure Of Cam Complexed To Dapk Peptide
Length = 148
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 88/145 (60%), Gaps = 8/145 (5%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G ++
Sbjct: 9 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEF 68
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
A K+ GYISA++LR V+ LGE L++EE+++MI+E
Sbjct: 69 LTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 128
Query: 178 DVDGDGRIDFNGDGYFSFEEFVEIV 202
D+DGDG++ ++EEFV+++
Sbjct: 129 DIDGDGQV--------NYEEFVQMM 145
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 62/131 (47%), Gaps = 26/131 (19%)
Query: 10 SIVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPV 55
I EFKEAF LFDKDGDG + + T L + P
Sbjct: 8 QIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPE 67
Query: 56 FLIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEE 103
FL + E +EAFR+FDKDG+G I+ EL VM +LG+ +EE+ +M+ E
Sbjct: 68 FLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIRE 127
Query: 104 VDINGKKAGNY 114
DI+G NY
Sbjct: 128 ADIDGDGQVNY 138
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 33/108 (30%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF--------------- 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DGDG IDF
Sbjct: 21 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLTMMARKMKDTD 80
Query: 188 --------------NGDGYFSFEEFVEIVYNMGATTEEKTADQEEKEL 221
+G+GY S E ++ N+G EK D+E E+
Sbjct: 81 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLG----EKLTDEEVDEM 124
>pdb|4AQR|A Chain A, Crystal Structure Of A Calmodulin In Complex With The
Regulatory Domain Of A Plasma-Membrane Ca2+-Atpase
pdb|4AQR|B Chain B, Crystal Structure Of A Calmodulin In Complex With The
Regulatory Domain Of A Plasma-Membrane Ca2+-Atpase
Length = 149
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 90/146 (61%), Gaps = 10/146 (6%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYS-I 116
I EFKEAF LFDKDGDG IT +ELG VMRSLGQ E ELQ M+ EVD +G ++
Sbjct: 10 ISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 69
Query: 117 MNHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKE 176
+N + D K+ G+ISA++LR V+ LGE L++EE+++MI+E
Sbjct: 70 LNLMARKMKDTD-SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIRE 128
Query: 177 VDVDGDGRIDFNGDGYFSFEEFVEIV 202
DVDGDG+I ++EEFV+++
Sbjct: 129 ADVDGDGQI--------NYEEFVKVM 146
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 61/131 (46%), Gaps = 26/131 (19%)
Query: 10 SIVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPV 55
I EFKEAF LFDKDGDG + + T L + P
Sbjct: 9 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPE 68
Query: 56 FLIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEE 103
FL + E KEAFR+FDKD +G I+ EL VM +LG+ +EE+ +M+ E
Sbjct: 69 FLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIRE 128
Query: 104 VDINGKKAGNY 114
D++G NY
Sbjct: 129 ADVDGDGQINY 139
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 14/84 (16%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G I F EF+ ++
Sbjct: 22 KDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI--------DFPEFLNLM 73
Query: 203 YNMGATTEEKTADQEEKELRDAFR 226
+ K D EE EL++AFR
Sbjct: 74 -----ARKMKDTDSEE-ELKEAFR 91
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 32/76 (42%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E KEAFR+FDKD +G + A R T E E R D D
Sbjct: 85 ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDE------------EVDEMIREADVD 132
Query: 72 GDGSITKEELGRVMRS 87
GDG I EE +VM +
Sbjct: 133 GDGQINYEEFVKVMMA 148
>pdb|3EVR|A Chain A, Crystal Structure Of Calcium Bound Monomeric Gcamp2
Length = 411
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 88/145 (60%), Gaps = 8/145 (5%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G ++
Sbjct: 273 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 332
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
A K+ GYISA++LR V+ LGE L++EE+++MI+E
Sbjct: 333 LTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 392
Query: 178 DVDGDGRIDFNGDGYFSFEEFVEIV 202
D+DGDG+++ +EEFV+++
Sbjct: 393 DIDGDGQVN--------YEEFVQMM 409
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 62/130 (47%), Gaps = 26/130 (20%)
Query: 11 IVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPVF 56
I EFKEAF LFDKDGDG + + T L + P F
Sbjct: 273 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 332
Query: 57 LIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEV 104
L + E +EAFR+FDKDG+G I+ EL VM +LG+ +EE+ +M+ E
Sbjct: 333 LTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 392
Query: 105 DINGKKAGNY 114
DI+G NY
Sbjct: 393 DIDGDGQVNY 402
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 33/108 (30%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF--------------- 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G IDF
Sbjct: 285 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTD 344
Query: 188 --------------NGDGYFSFEEFVEIVYNMGATTEEKTADQEEKEL 221
+G+GY S E ++ N+G EK D+E E+
Sbjct: 345 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLG----EKLTDEEVDEM 388
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+FDKDG+G + A R T E E R D D
Sbjct: 348 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE------------EVDEMIREADID 395
Query: 72 GDGSITKEELGRVMRS 87
GDG + EE ++M +
Sbjct: 396 GDGQVNYEEFVQMMTA 411
>pdb|3O77|A Chain A, The Structure Of Ca2+ Sensor (Case-16)
Length = 415
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 88/145 (60%), Gaps = 8/145 (5%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G ++
Sbjct: 276 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 335
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
A K+ GYISA++LR V+ LGE L++EE+++MI+E
Sbjct: 336 LTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 395
Query: 178 DVDGDGRIDFNGDGYFSFEEFVEIV 202
D+DGDG+++ +EEFV+++
Sbjct: 396 DIDGDGQVN--------YEEFVQMM 412
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 62/130 (47%), Gaps = 26/130 (20%)
Query: 11 IVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPVF 56
I EFKEAF LFDKDGDG + + T L + P F
Sbjct: 276 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 335
Query: 57 LIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEV 104
L + E +EAFR+FDKDG+G I+ EL VM +LG+ +EE+ +M+ E
Sbjct: 336 LTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 395
Query: 105 DINGKKAGNY 114
DI+G NY
Sbjct: 396 DIDGDGQVNY 405
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 33/108 (30%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF--------------- 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G IDF
Sbjct: 288 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTD 347
Query: 188 --------------NGDGYFSFEEFVEIVYNMGATTEEKTADQEEKEL 221
+G+GY S E ++ N+G EK D+E E+
Sbjct: 348 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLG----EKLTDEEVDEM 391
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+FDKDG+G + A R T E E R D D
Sbjct: 351 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE------------EVDEMIREADID 398
Query: 72 GDGSITKEELGRVMRS 87
GDG + EE ++M +
Sbjct: 399 GDGQVNYEEFVQMMTA 414
>pdb|3O78|A Chain A, The Structure Of Ca2+ Sensor (Case-12)
pdb|3O78|B Chain B, The Structure Of Ca2+ Sensor (Case-12)
Length = 415
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 88/145 (60%), Gaps = 8/145 (5%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G ++
Sbjct: 276 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 335
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
A K+ GYISA++LR V+ LGE L++EE+++MI+E
Sbjct: 336 LTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 395
Query: 178 DVDGDGRIDFNGDGYFSFEEFVEIV 202
D+DGDG+++ +EEFV+++
Sbjct: 396 DIDGDGQVN--------YEEFVQMM 412
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 62/130 (47%), Gaps = 26/130 (20%)
Query: 11 IVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPVF 56
I EFKEAF LFDKDGDG + + T L + P F
Sbjct: 276 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 335
Query: 57 LIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEV 104
L + E +EAFR+FDKDG+G I+ EL VM +LG+ +EE+ +M+ E
Sbjct: 336 LTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 395
Query: 105 DINGKKAGNY 114
DI+G NY
Sbjct: 396 DIDGDGQVNY 405
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 33/108 (30%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF--------------- 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G IDF
Sbjct: 288 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTD 347
Query: 188 --------------NGDGYFSFEEFVEIVYNMGATTEEKTADQEEKEL 221
+G+GY S E ++ N+G EK D+E E+
Sbjct: 348 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLG----EKLTDEEVDEM 391
Score = 34.3 bits (77), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+FDKDG+G + A R T E E R D D
Sbjct: 351 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE------------EVDEMIREADID 398
Query: 72 GDGSITKEELGRVMRS 87
GDG + EE ++M +
Sbjct: 399 GDGQVNYEEFVQMMTA 414
>pdb|1DEG|A Chain A, The Linker Of Des-Glu84 Calmodulin Is Bent As Seen In The
Crystal Structure
Length = 142
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/146 (43%), Positives = 89/146 (60%), Gaps = 11/146 (7%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G G
Sbjct: 5 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGN--GTIDFP 62
Query: 118 NHCGAVVNAL-DXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKE 176
+ + D K+ GYISA++LR V+ LGE L++EE+++MI+E
Sbjct: 63 EFLTMMARKMKDTDSEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIRE 122
Query: 177 VDVDGDGRIDFNGDGYFSFEEFVEIV 202
++DGDG++ ++EEFV+++
Sbjct: 123 ANIDGDGQV--------NYEEFVQMM 140
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 62/129 (48%), Gaps = 25/129 (19%)
Query: 11 IVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPVF 56
I EFKEAF LFDKDGDG + + T L + P F
Sbjct: 5 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 64
Query: 57 LIV-----------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVD 105
L + E +EAFR+FDKDG+G I+ EL VM +LG+ +EE+ +M+ E +
Sbjct: 65 LTMMARKMKDTDSEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREAN 124
Query: 106 INGKKAGNY 114
I+G NY
Sbjct: 125 IDGDGQVNY 133
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 32/107 (29%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF--------------- 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G IDF
Sbjct: 17 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTD 76
Query: 188 -------------NGDGYFSFEEFVEIVYNMGATTEEKTADQEEKEL 221
+G+GY S E ++ N+G EK D+E E+
Sbjct: 77 SEEIREAFRVFDKDGNGYISAAELRHVMTNLG----EKLTDEEVDEM 119
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+FDKDG+G + A R T E E R + D
Sbjct: 79 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE------------EVDEMIREANID 126
Query: 72 GDGSITKEELGRVMRS 87
GDG + EE ++M +
Sbjct: 127 GDGQVNYEEFVQMMTA 142
>pdb|1XFU|O Chain O, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|P Chain P, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|R Chain R, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|S Chain S, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|T Chain T, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFV|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFW|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFY|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFZ|O Chain O, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|P Chain P, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|R Chain R, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|S Chain S, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|T Chain T, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
Length = 149
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 87/145 (60%), Gaps = 8/145 (5%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G ++
Sbjct: 10 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 69
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
A K+ GYISA++LR V+ LGE L++EE++ MI+E
Sbjct: 70 LTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDQMIREA 129
Query: 178 DVDGDGRIDFNGDGYFSFEEFVEIV 202
D+DGDG++ ++EEFV+++
Sbjct: 130 DIDGDGQV--------NYEEFVQMM 146
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 62/131 (47%), Gaps = 26/131 (19%)
Query: 10 SIVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPV 55
I EFKEAF LFDKDGDG + + T L + P
Sbjct: 9 QIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPE 68
Query: 56 FLIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEE 103
FL + E +EAFR+FDKDG+G I+ EL VM +LG+ +EE+ QM+ E
Sbjct: 69 FLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDQMIRE 128
Query: 104 VDINGKKAGNY 114
DI+G NY
Sbjct: 129 ADIDGDGQVNY 139
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 29/103 (28%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF--------------- 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G IDF
Sbjct: 22 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTD 81
Query: 188 --------------NGDGYFSFEEFVEIVYNMGATTEEKTADQ 216
+G+GY S E ++ N+G ++ DQ
Sbjct: 82 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDQ 124
>pdb|3EK8|A Chain A, Calcium-Saturated Gcamp2 T116vG87R MUTANT MONOMER
Length = 449
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 88/145 (60%), Gaps = 8/145 (5%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G ++
Sbjct: 310 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 369
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
A K+ GYISA++LR V+ LGE L++EE+++MI+E
Sbjct: 370 LTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 429
Query: 178 DVDGDGRIDFNGDGYFSFEEFVEIV 202
D+DGDG+++ +EEFV+++
Sbjct: 430 DIDGDGQVN--------YEEFVQMM 446
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 62/130 (47%), Gaps = 26/130 (20%)
Query: 11 IVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPVF 56
I EFKEAF LFDKDGDG + + T L + P F
Sbjct: 310 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 369
Query: 57 LIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEV 104
L + E +EAFR+FDKDG+G I+ EL VM +LG+ +EE+ +M+ E
Sbjct: 370 LTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 429
Query: 105 DINGKKAGNY 114
DI+G NY
Sbjct: 430 DIDGDGQVNY 439
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 33/108 (30%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF--------------- 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G IDF
Sbjct: 322 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTD 381
Query: 188 --------------NGDGYFSFEEFVEIVYNMGATTEEKTADQEEKEL 221
+G+GY S E ++ N+G EK D+E E+
Sbjct: 382 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLG----EKLTDEEVDEM 425
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+FDKDG+G + A R T E E R D D
Sbjct: 385 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE------------EVDEMIREADID 432
Query: 72 GDGSITKEELGRVMRS 87
GDG + EE ++M +
Sbjct: 433 GDGQVNYEEFVQMMTA 448
>pdb|3SG6|A Chain A, Crystal Structure Of Dimeric Gcamp2-Lia(Linker 1)
Length = 450
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 88/145 (60%), Gaps = 8/145 (5%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G ++
Sbjct: 311 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 370
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
A K+ GYISA++LR V+ LGE L++EE+++MI+E
Sbjct: 371 LTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 430
Query: 178 DVDGDGRIDFNGDGYFSFEEFVEIV 202
D+DGDG+++ +EEFV+++
Sbjct: 431 DIDGDGQVN--------YEEFVQMM 447
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 62/130 (47%), Gaps = 26/130 (20%)
Query: 11 IVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPVF 56
I EFKEAF LFDKDGDG + + T L + P F
Sbjct: 311 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 370
Query: 57 LIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEV 104
L + E +EAFR+FDKDG+G I+ EL VM +LG+ +EE+ +M+ E
Sbjct: 371 LTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 430
Query: 105 DINGKKAGNY 114
DI+G NY
Sbjct: 431 DIDGDGQVNY 440
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 33/108 (30%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF--------------- 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G IDF
Sbjct: 323 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTD 382
Query: 188 --------------NGDGYFSFEEFVEIVYNMGATTEEKTADQEEKEL 221
+G+GY S E ++ N+G EK D+E E+
Sbjct: 383 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLG----EKLTDEEVDEM 426
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+FDKDG+G + A R T E E R D D
Sbjct: 386 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE------------EVDEMIREADID 433
Query: 72 GDGSITKEELGRVMRS 87
GDG + EE ++M +
Sbjct: 434 GDGQVNYEEFVQMMTA 449
>pdb|3EVU|A Chain A, Crystal Structure Of Calcium Bound Dimeric Gcamp2, (#1)
pdb|3EVV|A Chain A, Crystal Structure Of Calcium Bound Dimeric Gcamp2 (#2)
pdb|3EK4|A Chain A, Calcium-Saturated Gcamp2 Monomer
pdb|3EK7|A Chain A, Calcium-Saturated Gcamp2 Dimer
Length = 449
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 88/145 (60%), Gaps = 8/145 (5%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G ++
Sbjct: 310 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 369
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
A K+ GYISA++LR V+ LGE L++EE+++MI+E
Sbjct: 370 LTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 429
Query: 178 DVDGDGRIDFNGDGYFSFEEFVEIV 202
D+DGDG+++ +EEFV+++
Sbjct: 430 DIDGDGQVN--------YEEFVQMM 446
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 62/130 (47%), Gaps = 26/130 (20%)
Query: 11 IVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPVF 56
I EFKEAF LFDKDGDG + + T L + P F
Sbjct: 310 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 369
Query: 57 LIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEV 104
L + E +EAFR+FDKDG+G I+ EL VM +LG+ +EE+ +M+ E
Sbjct: 370 LTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 429
Query: 105 DINGKKAGNY 114
DI+G NY
Sbjct: 430 DIDGDGQVNY 439
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 33/108 (30%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF--------------- 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G IDF
Sbjct: 322 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTD 381
Query: 188 --------------NGDGYFSFEEFVEIVYNMGATTEEKTADQEEKEL 221
+G+GY S E ++ N+G EK D+E E+
Sbjct: 382 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLG----EKLTDEEVDEM 425
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+FDKDG+G + A R T E E R D D
Sbjct: 385 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE------------EVDEMIREADID 432
Query: 72 GDGSITKEELGRVMRS 87
GDG + EE ++M +
Sbjct: 433 GDGQVNYEEFVQMMTA 448
>pdb|2F2O|A Chain A, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
pdb|2F2O|B Chain B, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
pdb|2F2P|A Chain A, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
pdb|2F2P|B Chain B, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
Length = 179
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 88/145 (60%), Gaps = 8/145 (5%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G ++
Sbjct: 10 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 69
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
A K+ GYISA++LR V+ LGE L++EE+++MI+E
Sbjct: 70 LTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 129
Query: 178 DVDGDGRIDFNGDGYFSFEEFVEIV 202
D+DGDG++ ++EEFV+++
Sbjct: 130 DIDGDGQV--------NYEEFVQMM 146
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 62/131 (47%), Gaps = 26/131 (19%)
Query: 10 SIVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPV 55
I EFKEAF LFDKDGDG + + T L + P
Sbjct: 9 QIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPE 68
Query: 56 FLIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEE 103
FL + E +EAFR+FDKDG+G I+ EL VM +LG+ +EE+ +M+ E
Sbjct: 69 FLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIRE 128
Query: 104 VDINGKKAGNY 114
DI+G NY
Sbjct: 129 ADIDGDGQVNY 139
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 33/108 (30%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF--------------- 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G IDF
Sbjct: 22 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTD 81
Query: 188 --------------NGDGYFSFEEFVEIVYNMGATTEEKTADQEEKEL 221
+G+GY S E ++ N+G EK D+E E+
Sbjct: 82 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLG----EKLTDEEVDEM 125
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+FDKDG+G + A R T E E R D D
Sbjct: 85 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE------------EVDEMIREADID 132
Query: 72 GDGSITKEELGRVMRS 87
GDG + EE ++M +
Sbjct: 133 GDGQVNYEEFVQMMTA 148
>pdb|3SG7|A Chain A, Crystal Structure Of Gcamp3-Kf(Linker 1)
Length = 448
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 88/145 (60%), Gaps = 8/145 (5%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G ++
Sbjct: 309 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEF 368
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
A K+ GYISA++LR V+ LGE L++EE+++MI+E
Sbjct: 369 LTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 428
Query: 178 DVDGDGRIDFNGDGYFSFEEFVEIV 202
D+DGDG+++ +EEFV+++
Sbjct: 429 DIDGDGQVN--------YEEFVQMM 445
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 62/130 (47%), Gaps = 26/130 (20%)
Query: 11 IVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPVF 56
I EFKEAF LFDKDGDG + + T L + P F
Sbjct: 309 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEF 368
Query: 57 LIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEV 104
L + E +EAFR+FDKDG+G I+ EL VM +LG+ +EE+ +M+ E
Sbjct: 369 LTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 428
Query: 105 DINGKKAGNY 114
DI+G NY
Sbjct: 429 DIDGDGQVNY 438
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 14/84 (16%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
K+ G I+ +L V++ LG++ +E E++DMI EVD DGDG ID F EF+ ++
Sbjct: 321 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTID--------FPEFLTMM 372
Query: 203 YNMGATTEEKTADQEEKELRDAFR 226
+ K D EE E+R+AFR
Sbjct: 373 -----ARKMKDTDSEE-EIREAFR 390
>pdb|1RFJ|A Chain A, Crystal Structure Of Potato Calmodulin Pcm6
Length = 149
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 90/146 (61%), Gaps = 10/146 (6%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYS-I 116
I EFKEAF LFDKDGDG IT +ELG VMRSLGQ E ELQ M+ EVD +G ++
Sbjct: 10 ISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 69
Query: 117 MNHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKE 176
+N + D K+ G+ISA++LR V+ LGE L++EE+++MI+E
Sbjct: 70 LNLMARKMKDTD-SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIRE 128
Query: 177 VDVDGDGRIDFNGDGYFSFEEFVEIV 202
DVDGDG+I +++EFV+++
Sbjct: 129 ADVDGDGQI--------NYDEFVKVM 146
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 61/131 (46%), Gaps = 26/131 (19%)
Query: 10 SIVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPV 55
I EFKEAF LFDKDGDG + + T L + P
Sbjct: 9 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPE 68
Query: 56 FLIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEE 103
FL + E KEAFR+FDKD +G I+ EL VM +LG+ +EE+ +M+ E
Sbjct: 69 FLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIRE 128
Query: 104 VDINGKKAGNY 114
D++G NY
Sbjct: 129 ADVDGDGQINY 139
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 14/84 (16%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G I F EF+ ++
Sbjct: 22 KDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI--------DFPEFLNLM 73
Query: 203 YNMGATTEEKTADQEEKELRDAFR 226
+ K D EE EL++AFR
Sbjct: 74 -----ARKMKDTDSEE-ELKEAFR 91
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 32/76 (42%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E KEAFR+FDKD +G + A R T E E R D D
Sbjct: 85 ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDE------------EVDEMIREADVD 132
Query: 72 GDGSITKEELGRVMRS 87
GDG I +E +VM +
Sbjct: 133 GDGQINYDEFVKVMMA 148
>pdb|3U0K|A Chain A, Crystal Structure Of The Genetically Encoded Calcium
Indicator Rcamp
Length = 440
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 88/145 (60%), Gaps = 8/145 (5%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G ++
Sbjct: 301 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEF 360
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
A K+ GYISA++LR V+ LGE L++EE+++MI+E
Sbjct: 361 LIMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 420
Query: 178 DVDGDGRIDFNGDGYFSFEEFVEIV 202
D+DGDG+++ +EEFV+++
Sbjct: 421 DIDGDGQVN--------YEEFVQMM 437
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 63/130 (48%), Gaps = 26/130 (20%)
Query: 11 IVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPVF 56
I EFKEAF LFDKDGDG + + T L + P F
Sbjct: 301 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEF 360
Query: 57 LIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEV 104
LI+ E +EAFR+FDKDG+G I+ EL VM +LG+ +EE+ +M+ E
Sbjct: 361 LIMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 420
Query: 105 DINGKKAGNY 114
DI+G NY
Sbjct: 421 DIDGDGQVNY 430
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 33/108 (30%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF--------------- 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DGDG IDF
Sbjct: 313 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLIMMARKMKDTD 372
Query: 188 --------------NGDGYFSFEEFVEIVYNMGATTEEKTADQEEKEL 221
+G+GY S E ++ N+G EK D+E E+
Sbjct: 373 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLG----EKLTDEEVDEM 416
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+FDKDG+G + A R T E E R D D
Sbjct: 376 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE------------EVDEMIREADID 423
Query: 72 GDGSITKEELGRVMRS 87
GDG + EE ++M +
Sbjct: 424 GDGQVNYEEFVQMMTA 439
>pdb|1DMO|A Chain A, Calmodulin, Nmr, 30 Structures
pdb|3CLN|A Chain A, Structure Of Calmodulin Refined At 2.2 Angstroms
Resolution
Length = 148
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 88/145 (60%), Gaps = 8/145 (5%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G ++
Sbjct: 9 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 68
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
A K+ GYISA++LR V+ LGE L++EE+++MI+E
Sbjct: 69 LTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 128
Query: 178 DVDGDGRIDFNGDGYFSFEEFVEIV 202
++DGDG++ ++EEFV+++
Sbjct: 129 NIDGDGQV--------NYEEFVQMM 145
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 62/131 (47%), Gaps = 26/131 (19%)
Query: 10 SIVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPV 55
I EFKEAF LFDKDGDG + + T L + P
Sbjct: 8 QIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPE 67
Query: 56 FLIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEE 103
FL + E +EAFR+FDKDG+G I+ EL VM +LG+ +EE+ +M+ E
Sbjct: 68 FLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIRE 127
Query: 104 VDINGKKAGNY 114
+I+G NY
Sbjct: 128 ANIDGDGQVNY 138
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 33/108 (30%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF--------------- 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G IDF
Sbjct: 21 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTD 80
Query: 188 --------------NGDGYFSFEEFVEIVYNMGATTEEKTADQEEKEL 221
+G+GY S E ++ N+G EK D+E E+
Sbjct: 81 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLG----EKLTDEEVDEM 124
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+FDKDG+G + A R T E E R + D
Sbjct: 84 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE------------EVDEMIREANID 131
Query: 72 GDGSITKEELGRVMRS 87
GDG + EE ++M +
Sbjct: 132 GDGQVNYEEFVQMMTA 147
>pdb|2BKH|B Chain B, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure
pdb|2VAS|B Chain B, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State
pdb|3GN4|B Chain B, Myosin Lever Arm
pdb|3GN4|D Chain D, Myosin Lever Arm
pdb|3GN4|F Chain F, Myosin Lever Arm
pdb|3GN4|H Chain H, Myosin Lever Arm
pdb|3L9I|C Chain C, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal
Structure
pdb|2X51|B Chain B, M6 Delta Insert1
pdb|4ANJ|B Chain B, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State
(Mg.Adp.Alf4)
pdb|4DBP|C Chain C, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal
Structure
pdb|4DBQ|B Chain B, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor
State
Length = 149
Score = 108 bits (269), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 88/147 (59%), Gaps = 8/147 (5%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G ++
Sbjct: 10 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 69
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
A K+ G+ISA++LR V+ LGE L++EE+++MI+E
Sbjct: 70 LTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREA 129
Query: 178 DVDGDGRIDFNGDGYFSFEEFVEIVYN 204
D+DGDG++ ++EEFV ++ +
Sbjct: 130 DIDGDGQV--------NYEEFVTMMTS 148
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 62/130 (47%), Gaps = 26/130 (20%)
Query: 11 IVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPVF 56
I EFKEAF LFDKDGDG + + T L + P F
Sbjct: 10 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 69
Query: 57 LIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEV 104
L + E +EAFR+FDKDG+G I+ EL VM +LG+ +EE+ +M+ E
Sbjct: 70 LTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREA 129
Query: 105 DINGKKAGNY 114
DI+G NY
Sbjct: 130 DIDGDGQVNY 139
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 33/108 (30%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF--------------- 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G IDF
Sbjct: 22 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTD 81
Query: 188 --------------NGDGYFSFEEFVEIVYNMGATTEEKTADQEEKEL 221
+G+G+ S E ++ N+G EK D+E E+
Sbjct: 82 SEEEIREAFRVFDKDGNGFISAAELRHVMTNLG----EKLTDEEVDEM 125
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 32/76 (42%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+FDKDG+G + A R T E E R D D
Sbjct: 85 EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDE------------EVDEMIREADID 132
Query: 72 GDGSITKEELGRVMRS 87
GDG + EE +M S
Sbjct: 133 GDGQVNYEEFVTMMTS 148
>pdb|1OOJ|A Chain A, Structural Genomics Of Caenorhabditis Elegans : Calmodulin
Length = 149
Score = 108 bits (269), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 87/145 (60%), Gaps = 8/145 (5%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G ++
Sbjct: 10 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 69
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
A K+ G+ISA++LR V+ LGE L++EE+++MI+E
Sbjct: 70 LTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREA 129
Query: 178 DVDGDGRIDFNGDGYFSFEEFVEIV 202
D+DGDG++ ++EEFV ++
Sbjct: 130 DIDGDGQV--------NYEEFVTMM 146
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 62/130 (47%), Gaps = 26/130 (20%)
Query: 11 IVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPVF 56
I EFKEAF LFDKDGDG + + T L + P F
Sbjct: 10 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 69
Query: 57 LIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEV 104
L + E +EAFR+FDKDG+G I+ EL VM +LG+ +EE+ +M+ E
Sbjct: 70 LTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREA 129
Query: 105 DINGKKAGNY 114
DI+G NY
Sbjct: 130 DIDGDGQVNY 139
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 33/108 (30%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF--------------- 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G IDF
Sbjct: 22 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTD 81
Query: 188 --------------NGDGYFSFEEFVEIVYNMGATTEEKTADQEEKEL 221
+G+G+ S E ++ N+G EK D+E E+
Sbjct: 82 SEEEIREAFRVFDKDGNGFISAAELRHVMTNLG----EKLTDEEVDEM 125
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+FDKDG+G + A R T E E R D D
Sbjct: 85 EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDE------------EVDEMIREADID 132
Query: 72 GDGSITKEELGRVMRS 87
GDG + EE +M +
Sbjct: 133 GDGQVNYEEFVTMMTT 148
>pdb|2BBM|A Chain A, Solution Structure Of A Calmodulin-Target Peptide Complex
By Multidimensional Nmr
pdb|2BBN|A Chain A, Solution Structure Of A Calmodulin-Target Peptide Complex
By Multidimensional Nmr
pdb|1MXE|A Chain A, Structure Of The Complex Of Calmodulin With The Target
Sequence Of Camki
pdb|1MXE|B Chain B, Structure Of The Complex Of Calmodulin With The Target
Sequence Of Camki
pdb|4CLN|A Chain A, Structure Of A Recombinant Calmodulin From Drosophila
Melanogaster Refined At 2.2-Angstroms Resolution
Length = 148
Score = 108 bits (269), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 88/147 (59%), Gaps = 8/147 (5%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G ++
Sbjct: 9 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 68
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
A K+ G+ISA++LR V+ LGE L++EE+++MI+E
Sbjct: 69 LTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREA 128
Query: 178 DVDGDGRIDFNGDGYFSFEEFVEIVYN 204
D+DGDG++ ++EEFV ++ +
Sbjct: 129 DIDGDGQV--------NYEEFVTMMTS 147
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 62/130 (47%), Gaps = 26/130 (20%)
Query: 11 IVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPVF 56
I EFKEAF LFDKDGDG + + T L + P F
Sbjct: 9 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 68
Query: 57 LIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEV 104
L + E +EAFR+FDKDG+G I+ EL VM +LG+ +EE+ +M+ E
Sbjct: 69 LTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREA 128
Query: 105 DINGKKAGNY 114
DI+G NY
Sbjct: 129 DIDGDGQVNY 138
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 33/108 (30%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF--------------- 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G IDF
Sbjct: 21 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTD 80
Query: 188 --------------NGDGYFSFEEFVEIVYNMGATTEEKTADQEEKEL 221
+G+G+ S E ++ N+G EK D+E E+
Sbjct: 81 SEEEIREAFRVFDKDGNGFISAAELRHVMTNLG----EKLTDEEVDEM 124
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 32/76 (42%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+FDKDG+G + A R T E E R D D
Sbjct: 84 EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDE------------EVDEMIREADID 131
Query: 72 GDGSITKEELGRVMRS 87
GDG + EE +M S
Sbjct: 132 GDGQVNYEEFVTMMTS 147
>pdb|2LV6|A Chain A, The Complex Between Ca-calmodulin And Skeletal Muscle
Myosin Light Chain Kinase From Combination Of Nmr And
Aqueous And Contrast-matched Saxs Data
Length = 148
Score = 108 bits (269), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 87/145 (60%), Gaps = 8/145 (5%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G ++
Sbjct: 9 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 68
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
A K+ G+ISA++LR V+ LGE L++EE+++MI+E
Sbjct: 69 LTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREA 128
Query: 178 DVDGDGRIDFNGDGYFSFEEFVEIV 202
D+DGDG++ ++EEFV ++
Sbjct: 129 DIDGDGQV--------NYEEFVTMM 145
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 62/130 (47%), Gaps = 26/130 (20%)
Query: 11 IVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPVF 56
I EFKEAF LFDKDGDG + + T L + P F
Sbjct: 9 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 68
Query: 57 LIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEV 104
L + E +EAFR+FDKDG+G I+ EL VM +LG+ +EE+ +M+ E
Sbjct: 69 LTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREA 128
Query: 105 DINGKKAGNY 114
DI+G NY
Sbjct: 129 DIDGDGQVNY 138
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 33/108 (30%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF--------------- 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G IDF
Sbjct: 21 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTD 80
Query: 188 --------------NGDGYFSFEEFVEIVYNMGATTEEKTADQEEKEL 221
+G+G+ S E ++ N+G EK D+E E+
Sbjct: 81 SEEEIREAFRVFDKDGNGFISAAELRHVMTNLG----EKLTDEEVDEM 124
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+FDKDG+G + A R T E E R D D
Sbjct: 84 EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDE------------EVDEMIREADID 131
Query: 72 GDGSITKEELGRVMRS 87
GDG + EE +M +
Sbjct: 132 GDGQVNYEEFVTMMTA 147
>pdb|2VB6|B Chain B, Myosin Vi (Md-Insert2-Cam, Delta Insert1) Post-Rigor State
( Crystal Form 2)
Length = 149
Score = 107 bits (267), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 88/147 (59%), Gaps = 8/147 (5%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G ++
Sbjct: 10 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 69
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
A K+ G+ISA++LR V+ LGE L++EE+++MI+E
Sbjct: 70 LTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIRES 129
Query: 178 DVDGDGRIDFNGDGYFSFEEFVEIVYN 204
D+DGDG++ ++EEFV ++ +
Sbjct: 130 DIDGDGQV--------NYEEFVTMMTS 148
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 62/130 (47%), Gaps = 26/130 (20%)
Query: 11 IVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPVF 56
I EFKEAF LFDKDGDG + + T L + P F
Sbjct: 10 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 69
Query: 57 LIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEV 104
L + E +EAFR+FDKDG+G I+ EL VM +LG+ +EE+ +M+ E
Sbjct: 70 LTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIRES 129
Query: 105 DINGKKAGNY 114
DI+G NY
Sbjct: 130 DIDGDGQVNY 139
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 33/108 (30%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF--------------- 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G IDF
Sbjct: 22 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTD 81
Query: 188 --------------NGDGYFSFEEFVEIVYNMGATTEEKTADQEEKEL 221
+G+G+ S E ++ N+G EK D+E E+
Sbjct: 82 SEEEIREAFRVFDKDGNGFISAAELRHVMTNLG----EKLTDEEVDEM 125
Score = 34.7 bits (78), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 32/76 (42%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+FDKDG+G + A R T E E R D D
Sbjct: 85 EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDE------------EVDEMIRESDID 132
Query: 72 GDGSITKEELGRVMRS 87
GDG + EE +M S
Sbjct: 133 GDGQVNYEEFVTMMTS 148
>pdb|2L1W|A Chain A, The Solution Structure Of Soybean Calmodulin Isoform 4
Complexed With The Vacuolar Calcium Atpase Bca1 Peptide
Length = 149
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 89/149 (59%), Gaps = 10/149 (6%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYS-I 116
IV+FKEAF LFDKDGDG IT EEL V+RSL Q EEELQ M+ EVD +G +
Sbjct: 9 IVDFKEAFGLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMISEVDADGNGTIEFDEF 68
Query: 117 MNHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKE 176
++ V D K+ GYISAS+LR V+ LGE L++EE+E MIKE
Sbjct: 69 LSLMAKKVKDTD-AEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKE 127
Query: 177 VDVDGDGRIDFNGDGYFSFEEFVEIVYNM 205
D+DGDG++ ++EEFV+++ +
Sbjct: 128 ADLDGDGQV--------NYEEFVKMMMTV 148
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 64/131 (48%), Gaps = 26/131 (19%)
Query: 10 SIVEFKEAFRLFDKDGDGV-----QARHFRQXXXXXXXXYTTTMLY-----SNSPV---- 55
IV+FKEAF LFDKDGDG A R M+ N +
Sbjct: 8 QIVDFKEAFGLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMISEVDADGNGTIEFDE 67
Query: 56 FLIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEE 103
FL + E KEAF++FDKD +G I+ EL VM +LG+ +EE++QM++E
Sbjct: 68 FLSLMAKKVKDTDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKE 127
Query: 104 VDINGKKAGNY 114
D++G NY
Sbjct: 128 ADLDGDGQVNY 138
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 14/84 (16%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
K+ G I+ +L V++ L ++ +EEE++DMI EVD DG+G I F+EF+ ++
Sbjct: 21 KDGDGCITVEELATVIRSLDQNPTEEELQDMISEVDADGNGTI--------EFDEFLSLM 72
Query: 203 YNMGATTEEKTADQEEKELRDAFR 226
+ K D EE EL++AF+
Sbjct: 73 -----AKKVKDTDAEE-ELKEAFK 90
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 13/77 (16%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E KEAF++FDKD +G + A R T E ++ + D D
Sbjct: 84 ELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDE------------EVEQMIKEADLD 131
Query: 72 GDGSITKEELGRVMRSL 88
GDG + EE ++M ++
Sbjct: 132 GDGQVNYEEFVKMMMTV 148
>pdb|1CLM|A Chain A, Structure Of Paramecium Tetraurelia Calmodulin At 1.8
Angstroms Resolution
Length = 148
Score = 104 bits (259), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 86/147 (58%), Gaps = 8/147 (5%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G ++
Sbjct: 9 IAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 68
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
A ++ G ISA++LR V+ LGE L+++E+++MI+E
Sbjct: 69 LSLMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREA 128
Query: 178 DVDGDGRIDFNGDGYFSFEEFVEIVYN 204
D+DGDG I ++EEFV ++ +
Sbjct: 129 DIDGDGHI--------NYEEFVRMMVS 147
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 32/76 (42%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E EAF++FD+DG+G + A R T E E R D D
Sbjct: 84 ELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDD------------EVDEMIREADID 131
Query: 72 GDGSITKEELGRVMRS 87
GDG I EE R+M S
Sbjct: 132 GDGHINYEEFVRMMVS 147
>pdb|1EXR|A Chain A, The 1.0 Angstrom Crystal Structure Of Ca+2 Bound
Calmodulin
pdb|1N0Y|A Chain A, Crystal Structure Of Pb-Bound Calmodulin
pdb|1N0Y|B Chain B, Crystal Structure Of Pb-Bound Calmodulin
pdb|1OSA|A Chain A, Crystal Structure Of Recombinant Paramecium Tetraurelia
Calmodulin At 1.68 Angstroms Resolution
Length = 148
Score = 104 bits (259), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 86/147 (58%), Gaps = 8/147 (5%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G ++
Sbjct: 9 IAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 68
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
A ++ G ISA++LR V+ LGE L+++E+++MI+E
Sbjct: 69 LSLMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREA 128
Query: 178 DVDGDGRIDFNGDGYFSFEEFVEIVYN 204
D+DGDG I ++EEFV ++ +
Sbjct: 129 DIDGDGHI--------NYEEFVRMMVS 147
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 32/76 (42%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E EAF++FD+DG+G + A R T E E R D D
Sbjct: 84 ELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDD------------EVDEMIREADID 131
Query: 72 GDGSITKEELGRVMRS 87
GDG I EE R+M S
Sbjct: 132 GDGHINYEEFVRMMVS 147
>pdb|3EKJ|A Chain A, Calcium-Free Gcamp2 (Calcium Binding Deficient Mutant)
Length = 449
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/145 (41%), Positives = 84/145 (57%), Gaps = 8/145 (5%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKDGDG IT ++LG VMRSLGQ E ELQ M+ EV +G ++
Sbjct: 310 IAEFKEAFSLFDKDGDGGITTKQLGTVMRSLGQNPTEAELQDMINEVGADGNGTIDFPQF 369
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
A K+ GYISA+ LR V+ LGE L++EE+++MI+E
Sbjct: 370 LTMMARKMKDTDSEEEIREAFRVFGKDGNGYISAAQLRHVMTNLGEKLTDEEVDEMIREA 429
Query: 178 DVDGDGRIDFNGDGYFSFEEFVEIV 202
+DGDG+++ +E+FV+++
Sbjct: 430 GIDGDGQVN--------YEQFVQMM 446
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 60/130 (46%), Gaps = 26/130 (20%)
Query: 11 IVEFKEAFRLFDKDGD-GVQARHFRQXXXXXXXXYTTTMLYS-------------NSPVF 56
I EFKEAF LFDKDGD G+ + T L + P F
Sbjct: 310 IAEFKEAFSLFDKDGDGGITTKQLGTVMRSLGQNPTEAELQDMINEVGADGNGTIDFPQF 369
Query: 57 LIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEV 104
L + E +EAFR+F KDG+G I+ +L VM +LG+ +EE+ +M+ E
Sbjct: 370 LTMMARKMKDTDSEEEIREAFRVFGKDGNGYISAAQLRHVMTNLGEKLTDEEVDEMIREA 429
Query: 105 DINGKKAGNY 114
I+G NY
Sbjct: 430 GIDGDGQVNY 439
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 14/84 (16%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
K+ G I+ L V++ LG++ +E E++DMI EV DG+G ID F +F+ ++
Sbjct: 322 KDGDGGITTKQLGTVMRSLGQNPTEAELQDMINEVGADGNGTID--------FPQFLTMM 373
Query: 203 YNMGATTEEKTADQEEKELRDAFR 226
+ K D EE E+R+AFR
Sbjct: 374 -----ARKMKDTDSEE-EIREAFR 391
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+F KDG+G + A R T E E R D
Sbjct: 385 EIREAFRVFGKDGNGYISAAQLRHVMTNLGEKLTDE------------EVDEMIREAGID 432
Query: 72 GDGSITKEELGRVMRS 87
GDG + E+ ++M +
Sbjct: 433 GDGQVNYEQFVQMMTA 448
>pdb|1GGZ|A Chain A, Crystal Structure Of The Calmodulin-Like Protein (Hclp)
From Human Epithelial Cells
Length = 148
Score = 101 bits (252), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 85/149 (57%), Gaps = 12/149 (8%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
+ EFKEAF LFDKDGDG IT ELG VMRSLGQ E EL+ M+ E+D +G G
Sbjct: 9 VTEFKEAFSLFDKDGDGCITTRELGTVMRSLGQNPTEAELRDMMSEIDRDGN--GTVDFP 66
Query: 118 NHCGAVVNALDXXXXXXXXXXXXX--HKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIK 175
G + + K+ G++SA++LR V+ LGE LS+EE+++MI+
Sbjct: 67 EFLGMMARKMKDTDNEEEIREAFRVFDKDGNGFVSAAELRHVMTRLGEKLSDEEVDEMIR 126
Query: 176 EVDVDGDGRIDFNGDGYFSFEEFVEIVYN 204
D DGDG++ ++EEFV ++ +
Sbjct: 127 AADTDGDGQV--------NYEEFVRVLVS 147
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 59/130 (45%), Gaps = 26/130 (20%)
Query: 11 IVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPVF 56
+ EFKEAF LFDKDGDG + R T L + P F
Sbjct: 9 VTEFKEAFSLFDKDGDGCITTRELGTVMRSLGQNPTEAELRDMMSEIDRDGNGTVDFPEF 68
Query: 57 LIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEV 104
L + E +EAFR+FDKDG+G ++ EL VM LG+ +EE+ +M+
Sbjct: 69 LGMMARKMKDTDNEEEIREAFRVFDKDGNGFVSAAELRHVMTRLGEKLSDEEVDEMIRAA 128
Query: 105 DINGKKAGNY 114
D +G NY
Sbjct: 129 DTDGDGQVNY 138
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+FDKDG+G V A R + E E R D D
Sbjct: 84 EIREAFRVFDKDGNGFVSAAELRHVMTRLGEKLSDE------------EVDEMIRAADTD 131
Query: 72 GDGSITKEELGRVMRS 87
GDG + EE RV+ S
Sbjct: 132 GDGQVNYEEFVRVLVS 147
>pdb|1NIW|A Chain A, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1NIW|C Chain C, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1NIW|E Chain E, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1NIW|G Chain G, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1QX7|I Chain I, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|R Chain R, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|A Chain A, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|B Chain B, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|M Chain M, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
Length = 148
Score = 100 bits (250), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 61/143 (42%), Positives = 82/143 (57%), Gaps = 8/143 (5%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKDGDG+IT +ELG V RSLGQ E ELQ + EVD +G ++
Sbjct: 9 IAEFKEAFSLFDKDGDGTITTKELGTVXRSLGQNPTEAELQDXINEVDADGNGTIDFPEF 68
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
A K+ GYISA++LR V LGE L++EE+++ I+E
Sbjct: 69 LTXXARKXKDTDSEEEIREAFRVFDKDGNGYISAAELRHVXTNLGEKLTDEEVDEXIREA 128
Query: 178 DVDGDGRIDFNGDGYFSFEEFVE 200
D+DGDG++ ++EEFV+
Sbjct: 129 DIDGDGQV--------NYEEFVQ 143
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 60/130 (46%), Gaps = 26/130 (20%)
Query: 11 IVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPVF 56
I EFKEAF LFDKDGDG + + T L + P F
Sbjct: 9 IAEFKEAFSLFDKDGDGTITTKELGTVXRSLGQNPTEAELQDXINEVDADGNGTIDFPEF 68
Query: 57 LIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEV 104
L E +EAFR+FDKDG+G I+ EL V +LG+ +EE+ + + E
Sbjct: 69 LTXXARKXKDTDSEEEIREAFRVFDKDGNGYISAAELRHVXTNLGEKLTDEEVDEXIREA 128
Query: 105 DINGKKAGNY 114
DI+G NY
Sbjct: 129 DIDGDGQVNY 138
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 33/104 (31%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF--------------- 187
K+ G I+ +L V + LG++ +E E++D I EVD DG+G IDF
Sbjct: 21 KDGDGTITTKELGTVXRSLGQNPTEAELQDXINEVDADGNGTIDFPEFLTXXARKXKDTD 80
Query: 188 --------------NGDGYFSFEEFVEIVYNMGATTEEKTADQE 217
+G+GY S E + N+G EK D+E
Sbjct: 81 SEEEIREAFRVFDKDGNGYISAAELRHVXTNLG----EKLTDEE 120
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 13/70 (18%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+FDKDG+G + A R T E E R D D
Sbjct: 84 EIREAFRVFDKDGNGYISAAELRHVXTNLGEKLTDE------------EVDEXIREADID 131
Query: 72 GDGSITKEEL 81
GDG + EE
Sbjct: 132 GDGQVNYEEF 141
>pdb|1XFX|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
Length = 149
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/143 (42%), Positives = 81/143 (56%), Gaps = 8/143 (5%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKDGDG+IT +ELG V RSLGQ E ELQ + EVD +G ++
Sbjct: 10 IAEFKEAFSLFDKDGDGTITTKELGTVXRSLGQNPTEAELQDXINEVDADGNGTIDFPEF 69
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
A K+ GYISA++LR V LGE L++EE++ I+E
Sbjct: 70 LTXXARKXKDTDSEEEIREAFRVFDKDGNGYISAAELRHVXTNLGEKLTDEEVDQXIREA 129
Query: 178 DVDGDGRIDFNGDGYFSFEEFVE 200
D+DGDG++ ++EEFV+
Sbjct: 130 DIDGDGQV--------NYEEFVQ 144
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 60/130 (46%), Gaps = 26/130 (20%)
Query: 11 IVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPVF 56
I EFKEAF LFDKDGDG + + T L + P F
Sbjct: 10 IAEFKEAFSLFDKDGDGTITTKELGTVXRSLGQNPTEAELQDXINEVDADGNGTIDFPEF 69
Query: 57 LIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEV 104
L E +EAFR+FDKDG+G I+ EL V +LG+ +EE+ Q + E
Sbjct: 70 LTXXARKXKDTDSEEEIREAFRVFDKDGNGYISAAELRHVXTNLGEKLTDEEVDQXIREA 129
Query: 105 DINGKKAGNY 114
DI+G NY
Sbjct: 130 DIDGDGQVNY 139
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 34/112 (30%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF--------------- 187
K+ G I+ +L V + LG++ +E E++D I EVD DG+G IDF
Sbjct: 22 KDGDGTITTKELGTVXRSLGQNPTEAELQDXINEVDADGNGTIDFPEFLTXXARKXKDTD 81
Query: 188 --------------NGDGYFSFEEFVEIVYNMGATTEEKTADQE-EKELRDA 224
+G+GY S E + N+G EK D+E ++ +R+A
Sbjct: 82 SEEEIREAFRVFDKDGNGYISAAELRHVXTNLG----EKLTDEEVDQXIREA 129
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 13/70 (18%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+FDKDG+G + A R T E + R D D
Sbjct: 85 EIREAFRVFDKDGNGYISAAELRHVXTNLGEKLTDE------------EVDQXIREADID 132
Query: 72 GDGSITKEEL 81
GDG + EE
Sbjct: 133 GDGQVNYEEF 142
>pdb|1Y6W|A Chain A, Trapped Intermediate Of Calmodulin
Length = 148
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/143 (42%), Positives = 81/143 (56%), Gaps = 8/143 (5%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKDGDG+IT +ELG V RSLG E ELQ + EVD +G N+
Sbjct: 9 IAEFKEAFSLFDKDGDGTITTKELGTVXRSLGCNPTEAELQDXINEVDADGNGTINFPEF 68
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
A K+ GYISA++LR V LGE L++EE+++ I+E
Sbjct: 69 LTXXARCXKDTDSEEEIREAFRVFDKDGNGYISAAELRHVXTNLGEKLTDEEVDEXIREA 128
Query: 178 DVDGDGRIDFNGDGYFSFEEFVE 200
D+DGDG++ ++EEFV+
Sbjct: 129 DIDGDGQV--------NYEEFVQ 143
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 60/130 (46%), Gaps = 26/130 (20%)
Query: 11 IVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYS-------------NSPVF 56
I EFKEAF LFDKDGDG + + T L N P F
Sbjct: 9 IAEFKEAFSLFDKDGDGTITTKELGTVXRSLGCNPTEAELQDXINEVDADGNGTINFPEF 68
Query: 57 LIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEV 104
L E +EAFR+FDKDG+G I+ EL V +LG+ +EE+ + + E
Sbjct: 69 LTXXARCXKDTDSEEEIREAFRVFDKDGNGYISAAELRHVXTNLGEKLTDEEVDEXIREA 128
Query: 105 DINGKKAGNY 114
DI+G NY
Sbjct: 129 DIDGDGQVNY 138
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 34/112 (30%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF--------------- 187
K+ G I+ +L V + LG + +E E++D I EVD DG+G I+F
Sbjct: 21 KDGDGTITTKELGTVXRSLGCNPTEAELQDXINEVDADGNGTINFPEFLTXXARCXKDTD 80
Query: 188 --------------NGDGYFSFEEFVEIVYNMGATTEEKTADQE-EKELRDA 224
+G+GY S E + N+G EK D+E ++ +R+A
Sbjct: 81 SEEEIREAFRVFDKDGNGYISAAELRHVXTNLG----EKLTDEEVDEXIREA 128
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 13/70 (18%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+FDKDG+G + A R T E E R D D
Sbjct: 84 EIREAFRVFDKDGNGYISAAELRHVXTNLGEKLTDE------------EVDEXIREADID 131
Query: 72 GDGSITKEEL 81
GDG + EE
Sbjct: 132 GDGQVNYEEF 141
>pdb|2LMT|A Chain A, Nmr Structure Of Androcam
pdb|2LMU|A Chain A, Androcam At High Calcium
pdb|2LMV|A Chain A, Androcam At High Calcium With Three Explicit Ca2+
Length = 148
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 81/147 (55%), Gaps = 12/147 (8%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFK+AF FDK+G G I ELG +MR+LGQ E ELQ ++ E + N N++
Sbjct: 9 IAEFKDAFVQFDKEGTGKIATRELGTLMRTLGQNPTEAELQDLIAEAENNNNGQLNFT-- 66
Query: 118 NHCGAVVNALDXXXXXXXXXXXXX--HKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIK 175
CG + + ++ G+IS ++LR V+ LGE +++EEI++MI+
Sbjct: 67 EFCGIMAKQMRETDTEEEMREAFKIFDRDGDGFISPAELRFVMINLGEKVTDEEIDEMIR 126
Query: 176 EVDVDGDGRIDFNGDGYFSFEEFVEIV 202
E D DGDG I+ +EEFV ++
Sbjct: 127 EADFDGDGMIN--------YEEFVWMI 145
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 33/108 (30%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF--------------- 187
K G I+ +L +++ LG++ +E E++D+I E + + +G+++F
Sbjct: 21 KEGTGKIATRELGTLMRTLGQNPTEAELQDLIAEAENNNNGQLNFTEFCGIMAKQMRETD 80
Query: 188 --------------NGDGYFSFEEFVEIVYNMGATTEEKTADQEEKEL 221
+GDG+ S E ++ N+G EK D+E E+
Sbjct: 81 TEEEMREAFKIFDRDGDGFISPAELRFVMINLG----EKVTDEEIDEM 124
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 37/102 (36%), Gaps = 47/102 (46%)
Query: 13 EFKEAFRLFDKDGDGVQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKDG 72
E +EAF++FD+DGDG
Sbjct: 84 EMREAFKIFDRDGDGF-------------------------------------------- 99
Query: 73 DGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNY 114
I+ EL VM +LG+ +EE+ +M+ E D +G NY
Sbjct: 100 ---ISPAELRFVMINLGEKVTDEEIDEMIREADFDGDGMINY 138
>pdb|2W49|0 Chain 0, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|3 Chain 3, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|6 Chain 6, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|9 Chain 9, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4U|0 Chain 0, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|3 Chain 3, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|6 Chain 6, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|9 Chain 9, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
Length = 159
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 76/135 (56%), Gaps = 3/135 (2%)
Query: 57 LIVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYS- 115
+I EFK AF +FD DG G I+ +ELG VMR LGQ +EEL ++EEVD +G ++
Sbjct: 15 MIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEE 74
Query: 116 --IMNHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDM 173
+M +A KN G+I +L +L+ GE ++EE+IED+
Sbjct: 75 FLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDL 134
Query: 174 IKEVDVDGDGRIDFN 188
+K+ D + DGRIDF+
Sbjct: 135 MKDSDKNNDGRIDFD 149
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 29/126 (23%)
Query: 11 IVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTT----------------TMLYSNS 53
I EFK AF +FD DG G + + T T+ +
Sbjct: 16 IAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEF 75
Query: 54 PVFLIVEFKE------------AFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQML 101
V ++ + KE FR+FDK+ DG I EELG ++R+ G+ EE+++ ++
Sbjct: 76 LVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLM 135
Query: 102 EEVDIN 107
++ D N
Sbjct: 136 KDSDKN 141
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 19/105 (18%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEF-VEIVYNM 205
G IS +L V++ LG++ ++EE++ +I+EVD DG G IDF EEF V +V M
Sbjct: 32 GDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDF--------EEFLVMMVRQM 83
Query: 206 GATTEEKTADQEEKELRDAFREVEDIAD------EVSDCVRNTGE 244
+E + E+EL + FR + AD E+ + +R TGE
Sbjct: 84 ----KEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGE 124
>pdb|4TNC|A Chain A, Refined Structure Of Chicken Skeletal Muscle Troponin C In
The Two-Calcium State At 2-Angstroms Resolution
Length = 162
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 76/135 (56%), Gaps = 3/135 (2%)
Query: 57 LIVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYS- 115
+I EFK AF +FD DG G I+ +ELG VMR LGQ +EEL ++EEVD +G ++
Sbjct: 18 MIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEE 77
Query: 116 --IMNHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDM 173
+M +A KN G+I +L +L+ GE ++EE+IED+
Sbjct: 78 FLVMMVRQMKEDAKGKSEEELADCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDL 137
Query: 174 IKEVDVDGDGRIDFN 188
+K+ D + DGRIDF+
Sbjct: 138 MKDSDKNNDGRIDFD 152
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 58/105 (55%), Gaps = 19/105 (18%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEF-VEIVYNM 205
G IS +L V++ LG++ ++EE++ +I+EVD DG G IDF EEF V +V M
Sbjct: 35 GDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDF--------EEFLVMMVRQM 86
Query: 206 GATTEEKTADQEEKELRDAFREVEDIAD------EVSDCVRNTGE 244
+E + E+EL D FR + AD E+ + +R TGE
Sbjct: 87 ----KEDAKGKSEEELADCFRIFDKNADGFIDIEELGEILRATGE 127
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 29/126 (23%)
Query: 11 IVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTT----------------TMLYSNS 53
I EFK AF +FD DG G + + T T+ +
Sbjct: 19 IAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEF 78
Query: 54 PVFLIVEFKE------------AFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQML 101
V ++ + KE FR+FDK+ DG I EELG ++R+ G+ EE+++ ++
Sbjct: 79 LVMMVRQMKEDAKGKSEEELADCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLM 138
Query: 102 EEVDIN 107
++ D N
Sbjct: 139 KDSDKN 144
>pdb|1YTZ|C Chain C, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Activated State
pdb|1YV0|C Chain C, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Free State
pdb|1NCX|A Chain A, Troponin C
pdb|1NCY|A Chain A, Troponin-C, Complex With Manganese
pdb|1NCZ|A Chain A, Troponin C
pdb|1TOP|A Chain A, Structure Of Chicken Skeletal Muscle Troponin-C At 1.78
Angstroms Resolution
Length = 162
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 76/135 (56%), Gaps = 3/135 (2%)
Query: 57 LIVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYS- 115
+I EFK AF +FD DG G I+ +ELG VMR LGQ +EEL ++EEVD +G ++
Sbjct: 18 MIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEE 77
Query: 116 --IMNHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDM 173
+M +A KN G+I +L +L+ GE ++EE+IED+
Sbjct: 78 FLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDL 137
Query: 174 IKEVDVDGDGRIDFN 188
+K+ D + DGRIDF+
Sbjct: 138 MKDSDKNNDGRIDFD 152
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 29/126 (23%)
Query: 11 IVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTT----------------TMLYSNS 53
I EFK AF +FD DG G + + T T+ +
Sbjct: 19 IAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEF 78
Query: 54 PVFLIVEFKE------------AFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQML 101
V ++ + KE FR+FDK+ DG I EELG ++R+ G+ EE+++ ++
Sbjct: 79 LVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLM 138
Query: 102 EEVDIN 107
++ D N
Sbjct: 139 KDSDKN 144
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 19/105 (18%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEF-VEIVYNM 205
G IS +L V++ LG++ ++EE++ +I+EVD DG G IDF EEF V +V M
Sbjct: 35 GDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDF--------EEFLVMMVRQM 86
Query: 206 GATTEEKTADQEEKELRDAFREVEDIAD------EVSDCVRNTGE 244
+E + E+EL + FR + AD E+ + +R TGE
Sbjct: 87 ----KEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGE 127
>pdb|5TNC|A Chain A, Refined Crystal Structure Of Troponin C From Turkey
Skeletal Muscle At 2.0 Angstroms Resolution
Length = 162
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 76/135 (56%), Gaps = 3/135 (2%)
Query: 57 LIVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYS- 115
+I EFK AF +FD DG G I+ +ELG VMR LGQ +EEL ++EEVD +G ++
Sbjct: 18 MIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEE 77
Query: 116 --IMNHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDM 173
+M +A KN G+I +L +L+ GE ++EE+IED+
Sbjct: 78 FLVMMVRQMKEDAKGKSEEELEDCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDL 137
Query: 174 IKEVDVDGDGRIDFN 188
+K+ D + DGRIDF+
Sbjct: 138 MKDSDKNNDGRIDFD 152
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 58/105 (55%), Gaps = 19/105 (18%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEF-VEIVYNM 205
G IS +L V++ LG++ ++EE++ +I+EVD DG G IDF EEF V +V M
Sbjct: 35 GDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDF--------EEFLVMMVRQM 86
Query: 206 GATTEEKTADQEEKELRDAFREVEDIAD------EVSDCVRNTGE 244
+E + E+EL D FR + AD E+ + +R TGE
Sbjct: 87 ----KEDAKGKSEEELEDCFRIFDKNADGFIDIEELGEILRATGE 127
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 29/126 (23%)
Query: 11 IVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTT----------------TMLYSNS 53
I EFK AF +FD DG G + + T T+ +
Sbjct: 19 IAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEF 78
Query: 54 PVFLIVEFKE------------AFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQML 101
V ++ + KE FR+FDK+ DG I EELG ++R+ G+ EE+++ ++
Sbjct: 79 LVMMVRQMKEDAKGKSEEELEDCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLM 138
Query: 102 EEVDIN 107
++ D N
Sbjct: 139 KDSDKN 144
>pdb|1LKJ|A Chain A, Nmr Structure Of Apo Calmodulin From Yeast Saccharomyces
Cerevisiae
Length = 146
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 72/130 (55%), Gaps = 1/130 (0%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKD +GSI+ EL VMRSLG E E+ ++ E+D++G +S
Sbjct: 9 IAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSEF 68
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
+ + KN G ISA++L+ VL +GE L++ E++DM++EV
Sbjct: 69 LALMSRQLKSNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDDMLREV 128
Query: 178 DVDGDGRIDF 187
DG G I+
Sbjct: 129 S-DGSGEINI 137
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 36/123 (29%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF--------------- 187
K+ G IS+S+L V++ LG SE E+ D++ E+DVDG+ +I+F
Sbjct: 21 KDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSEFLALMSRQLKSND 80
Query: 188 --------------NGDGYFSFEEFVEIVYNMGATTEEKTADQEEKELRDAFREVEDIAD 233
NGDG S E ++ ++G EK D E+ D REV D +
Sbjct: 81 SEQELLEAFKVFDKNGDGLISAAELKHVLTSIG----EKLTD---AEVDDMLREVSDGSG 133
Query: 234 EVS 236
E++
Sbjct: 134 EIN 136
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 51/125 (40%), Gaps = 36/125 (28%)
Query: 11 IVEFKEAFRLFDKDGDG-------------------------------VQARHFRQXXXX 39
I EFKEAF LFDKD +G V H Q
Sbjct: 9 IAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNH--QIEFS 66
Query: 40 XXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQ 99
+ L SN E EAF++FDK+GDG I+ EL V+ S+G+ + E+
Sbjct: 67 EFLALMSRQLKSNDSE---QELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDD 123
Query: 100 MLEEV 104
ML EV
Sbjct: 124 MLREV 128
>pdb|4DS7|A Chain A, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
pdb|4DS7|B Chain B, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
pdb|4DS7|C Chain C, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
pdb|4DS7|D Chain D, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
Length = 147
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 72/130 (55%), Gaps = 1/130 (0%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKD GSI+ EL VMRSLG E E+ ++ E+D++G A +S
Sbjct: 10 IAEFKEAFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGNHAIEFSEF 69
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
+ + KN G ISA++L+ VL +GE L++ E+++M++EV
Sbjct: 70 LALMSRQLKCNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREV 129
Query: 178 DVDGDGRIDF 187
DG G I+
Sbjct: 130 S-DGSGEINI 138
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 36/123 (29%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF--------------- 187
K+ G ISAS+L V++ LG SE E+ D++ E+DVDG+ I+F
Sbjct: 22 KDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGNHAIEFSEFLALMSRQLKCND 81
Query: 188 --------------NGDGYFSFEEFVEIVYNMGATTEEKTADQEEKELRDAFREVEDIAD 233
NGDG S E ++ ++G EK D E E+ REV D +
Sbjct: 82 SEQELLEAFKVFDKNGDGLISAAELKHVLTSIG----EKLTDAEVDEM---LREVSDGSG 134
Query: 234 EVS 236
E++
Sbjct: 135 EIN 137
>pdb|2LHI|A Chain A, Solution Structure Of Ca2+CNA1 PEPTIDE-Bound Ycam
Length = 176
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 72/130 (55%), Gaps = 1/130 (0%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKD +GSI+ EL VMRSLG E E+ ++ E+D++G +S
Sbjct: 10 IAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSEF 69
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
+ + KN G ISA++L+ VL +GE L++ E++DM++EV
Sbjct: 70 LALMSRQLKSNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDDMLREV 129
Query: 178 DVDGDGRIDF 187
DG G I+
Sbjct: 130 S-DGSGEINI 138
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 36/122 (29%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF--------------- 187
K+ G IS+S+L V++ LG SE E+ D++ E+DVDG+ +I+F
Sbjct: 22 KDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSEFLALMSRQLKSND 81
Query: 188 --------------NGDGYFSFEEFVEIVYNMGATTEEKTADQEEKELRDAFREVEDIAD 233
NGDG S E ++ ++G EK D E+ D REV D +
Sbjct: 82 SEQELLEAFKVFDKNGDGLISAAELKHVLTSIG----EKLTD---AEVDDMLREVSDGSG 134
Query: 234 EV 235
E+
Sbjct: 135 EI 136
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 51/125 (40%), Gaps = 36/125 (28%)
Query: 11 IVEFKEAFRLFDKDGDG-------------------------------VQARHFRQXXXX 39
I EFKEAF LFDKD +G V H Q
Sbjct: 10 IAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNH--QIEFS 67
Query: 40 XXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQ 99
+ L SN E EAF++FDK+GDG I+ EL V+ S+G+ + E+
Sbjct: 68 EFLALMSRQLKSNDSE---QELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDD 124
Query: 100 MLEEV 104
ML EV
Sbjct: 125 MLREV 129
>pdb|1TNW|A Chain A, Nmr Solution Structure Of Calcium Saturated Skeletal
Muscle Troponin C
pdb|1TNX|A Chain A, Nmr Solution Structure Of Calcium Saturated Skeletal
Muscle Troponin C
Length = 162
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 75/135 (55%), Gaps = 3/135 (2%)
Query: 57 LIVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYS- 115
+I EFK AF +FD DG G I+ +ELG VMR LGQ +EEL ++EEVD +G ++
Sbjct: 18 MIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEE 77
Query: 116 --IMNHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDM 173
+M +A KN G+I +L +L+ GE + EE+IED+
Sbjct: 78 FLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVIEEDIEDL 137
Query: 174 IKEVDVDGDGRIDFN 188
+K+ D + DGRIDF+
Sbjct: 138 MKDSDKNNDGRIDFD 152
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 29/126 (23%)
Query: 11 IVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTT----------------TMLYSNS 53
I EFK AF +FD DG G + + T T+ +
Sbjct: 19 IAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEF 78
Query: 54 PVFLIVEFKE------------AFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQML 101
V ++ + KE FR+FDK+ DG I EELG ++R+ G+ EE+++ ++
Sbjct: 79 LVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVIEEDIEDLM 138
Query: 102 EEVDIN 107
++ D N
Sbjct: 139 KDSDKN 144
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 19/105 (18%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEF-VEIVYNM 205
G IS +L V++ LG++ ++EE++ +I+EVD DG G IDF EEF V +V M
Sbjct: 35 GDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDF--------EEFLVMMVRQM 86
Query: 206 GATTEEKTADQEEKELRDAFREVEDIAD------EVSDCVRNTGE 244
+E + E+EL + FR + AD E+ + +R TGE
Sbjct: 87 ----KEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGE 127
>pdb|1TCF|A Chain A, Crystal Structure Of Calcium-Saturated Rabbit Skeletal
Troponin C
pdb|1TN4|A Chain A, Four Calcium Tnc
pdb|2TN4|A Chain A, Four Calcium Tnc
Length = 159
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 75/135 (55%), Gaps = 3/135 (2%)
Query: 57 LIVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYS- 115
+I EFK AF +FD DG G I+ +ELG VMR LGQ +EEL ++EEVD +G ++
Sbjct: 15 MIAEFKAAFDMFDADGGGDISVKELGTVMRMLGQTPTKEELDAIIEEVDEDGSGTIDFEE 74
Query: 116 --IMNHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDM 173
+M +A +N GYI A +L + + GE +++EEIE +
Sbjct: 75 FLVMMVRQMKEDAKGKSEEELAELFRIFDRNADGYIDAEELAEIFRASGEHVTDEEIESL 134
Query: 174 IKEVDVDGDGRIDFN 188
+K+ D + DGRIDF+
Sbjct: 135 MKDGDKNNDGRIDFD 149
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 32/92 (34%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF------------------- 187
G IS +L V++ LG+ ++EE++ +I+EVD DG G IDF
Sbjct: 32 GDISVKELGTVMRMLGQTPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKS 91
Query: 188 -------------NGDGYFSFEEFVEIVYNMG 206
N DGY EE EI G
Sbjct: 92 EEELAELFRIFDRNADGYIDAEELAEIFRASG 123
>pdb|1A2X|A Chain A, Complex Of Troponin C With A 47 Residue (1-47) Fragment Of
Troponin I
Length = 159
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 75/135 (55%), Gaps = 3/135 (2%)
Query: 57 LIVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYS- 115
+I EFK AF +FD DG G I+ +ELG VMR LGQ +EEL ++EEVD +G ++
Sbjct: 15 MIAEFKAAFDMFDADGGGDISVKELGTVMRMLGQTPTKEELDAIIEEVDEDGSGTIDFEE 74
Query: 116 --IMNHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDM 173
+M +A +N GYI A +L + + GE +++EEIE +
Sbjct: 75 FLVMMVRQMKEDAKGKSEEELAECFRIFDRNADGYIDAEELAEIFRASGEHVTDEEIESL 134
Query: 174 IKEVDVDGDGRIDFN 188
+K+ D + DGRIDF+
Sbjct: 135 MKDGDKNNDGRIDFD 149
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 19/105 (18%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEF-VEIVYNM 205
G IS +L V++ LG+ ++EE++ +I+EVD DG G IDF EEF V +V M
Sbjct: 32 GDISVKELGTVMRMLGQTPTKEELDAIIEEVDEDGSGTIDF--------EEFLVMMVRQM 83
Query: 206 GATTEEKTADQEEKELRDAFREVEDIAD------EVSDCVRNTGE 244
+E + E+EL + FR + AD E+++ R +GE
Sbjct: 84 ----KEDAKGKSEEELAECFRIFDRNADGYIDAEELAEIFRASGE 124
>pdb|2JT3|A Chain A, Solution Structure Of F153w Cardiac Troponin C
Length = 161
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 81/147 (55%), Gaps = 10/147 (6%)
Query: 60 EFKEAFRLFDKDG-DGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIMN 118
EFK AF +F DGSI+ +ELG+VMR LGQ EELQ+M++EVD +G +G
Sbjct: 19 EFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDG--SGTVDFDE 76
Query: 119 HCGAVVNALDXXXXXXXXXXXXX-----HKNYRGYISASDLRAVLQCLGEDLSEEEIEDM 173
+V ++ KN GYI +L+ +LQ GE ++E++IE++
Sbjct: 77 FLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEEL 136
Query: 174 IKEVDVDGDGRIDFNGDGYFSFEEFVE 200
+K+ D + DGRID+ D + F + VE
Sbjct: 137 MKDGDKNNDGRIDY--DEWLEFMKGVE 161
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 17/104 (16%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMG 206
G IS +L V++ LG++ + EE+++MI EVD DG G +DF+ E + M
Sbjct: 34 GSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFD-----------EFLVMMV 82
Query: 207 ATTEEKTADQEEKELRDAFREVEDIA------DEVSDCVRNTGE 244
+ ++ + + E+EL D FR + A DE+ ++ TGE
Sbjct: 83 RSMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKIMLQATGE 126
>pdb|2JT0|A Chain A, Solution Structure Of F104w Cardiac Troponin C
Length = 161
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 81/145 (55%), Gaps = 6/145 (4%)
Query: 60 EFKEAFRLFDKDG-DGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYS--- 115
EFK AF +F DGSI+ +ELG+VMR LGQ EELQ+M++EVD +G ++
Sbjct: 19 EFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFL 78
Query: 116 IMNHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIK 175
+M ++ KN GYI +L+ +LQ GE ++E++IE+++K
Sbjct: 79 VMMVRSMKDDSKGKSEEELSDLFRMWDKNADGYIDLDELKIMLQATGETITEDDIEELMK 138
Query: 176 EVDVDGDGRIDFNGDGYFSFEEFVE 200
+ D + DGRID+ D + F + VE
Sbjct: 139 DGDKNNDGRIDY--DEFLEFMKGVE 161
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 17/104 (16%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMG 206
G IS +L V++ LG++ + EE+++MI EVD DG G +DF+ E + M
Sbjct: 34 GSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFD-----------EFLVMMV 82
Query: 207 ATTEEKTADQEEKELRDAFREVEDIA------DEVSDCVRNTGE 244
+ ++ + + E+EL D FR + A DE+ ++ TGE
Sbjct: 83 RSMKDDSKGKSEEELSDLFRMWDKNADGYIDLDELKIMLQATGE 126
>pdb|2JTZ|A Chain A, Solution Structure And Chemical Shift Assignments Of The
F104-To-5-Flurotryptophan Mutant Of Cardiac Troponin C
Length = 161
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 82/145 (56%), Gaps = 6/145 (4%)
Query: 60 EFKEAFRLFDKDG-DGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYS--- 115
EFK AF +F DGSI+ +ELG+VMR LGQ EELQ+M++EVD +G ++
Sbjct: 19 EFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFL 78
Query: 116 IMNHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIK 175
+M ++ KN GYI +L+ +LQ GE ++E++IE+++K
Sbjct: 79 VMMVRSMKDDSKGKSEEELSDLFRMXDKNADGYIDLDELKIMLQATGETITEDDIEELMK 138
Query: 176 EVDVDGDGRIDFNGDGYFSFEEFVE 200
+ D + DGRID+ D + F + VE
Sbjct: 139 DGDKNNDGRIDY--DEFLEFMKGVE 161
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 17/104 (16%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMG 206
G IS +L V++ LG++ + EE+++MI EVD DG G +DF+ E + M
Sbjct: 34 GSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFD-----------EFLVMMV 82
Query: 207 ATTEEKTADQEEKELRDAFREVEDIA------DEVSDCVRNTGE 244
+ ++ + + E+EL D FR + A DE+ ++ TGE
Sbjct: 83 RSMKDDSKGKSEEELSDLFRMXDKNADGYIDLDELKIMLQATGE 126
>pdb|1AJ4|A Chain A, Structure Of Calcium-Saturated Cardiac Troponin C, Nmr, 1
Structure
Length = 161
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 81/147 (55%), Gaps = 10/147 (6%)
Query: 60 EFKEAFRLFDKDG-DGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIMN 118
EFK AF +F DGSI+ +ELG+VMR LGQ EELQ+M++EVD +G +G
Sbjct: 19 EFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDG--SGTVDFDE 76
Query: 119 HCGAVVNALDXXXXXXXXXXXXX-----HKNYRGYISASDLRAVLQCLGEDLSEEEIEDM 173
+V ++ KN GYI +L+ +LQ GE ++E++IE++
Sbjct: 77 FLVMMVRSMKDDSKGKTEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEEL 136
Query: 174 IKEVDVDGDGRIDFNGDGYFSFEEFVE 200
+K+ D + DGRID+ D + F + VE
Sbjct: 137 MKDGDKNNDGRIDY--DEFLEFMKGVE 161
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 57/104 (54%), Gaps = 17/104 (16%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMG 206
G IS +L V++ LG++ + EE+++MI EVD DG G +DF+ E V +V +M
Sbjct: 34 GSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFD-------EFLVMMVRSMK 86
Query: 207 ATTEEKTADQEEKELRDAFREVEDIAD------EVSDCVRNTGE 244
++ KT E+EL D FR + AD E+ ++ TGE
Sbjct: 87 DDSKGKT----EEELSDLFRMFDKNADGYIDLEELKIMLQATGE 126
>pdb|2JT8|A Chain A, Solution Structure Of The F153-To-5-Flurotryptophan Mutant
Of Human Cardiac Troponin C
Length = 161
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 76/135 (56%), Gaps = 8/135 (5%)
Query: 60 EFKEAFRLFDKDG-DGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIMN 118
EFK AF +F DGSI+ +ELG+VMR LGQ EELQ+M++EVD +G +G
Sbjct: 19 EFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDG--SGTVDFDE 76
Query: 119 HCGAVVNALDXXXXXXXXXXXXX-----HKNYRGYISASDLRAVLQCLGEDLSEEEIEDM 173
+V ++ KN GYI +L+ +LQ GE ++E++IE++
Sbjct: 77 FLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEEL 136
Query: 174 IKEVDVDGDGRIDFN 188
+K+ D + DGRID++
Sbjct: 137 MKDGDKNNDGRIDYD 151
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 17/104 (16%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMG 206
G IS +L V++ LG++ + EE+++MI EVD DG G +DF+ E + M
Sbjct: 34 GSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFD-----------EFLVMMV 82
Query: 207 ATTEEKTADQEEKELRDAFREVEDIA------DEVSDCVRNTGE 244
+ ++ + + E+EL D FR + A DE+ ++ TGE
Sbjct: 83 RSMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKIMLQATGE 126
>pdb|1DTL|A Chain A, Crystal Structure Of Calcium-Saturated (3ca2+) Cardiac
Troponin C Complexed With The Calcium Sensitizer
Bepridil At 2.15 A Resolution
pdb|1J1D|A Chain A, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1D|D Chain D, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|A Chain A, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|D Chain D, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
Length = 161
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 81/145 (55%), Gaps = 6/145 (4%)
Query: 60 EFKEAFRLFDKDG-DGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYS--- 115
EFK AF +F DGSI+ +ELG+VMR LGQ EELQ+M++EVD +G ++
Sbjct: 19 EFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFL 78
Query: 116 IMNHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIK 175
+M ++ KN GYI +L+ +LQ GE ++E++IE+++K
Sbjct: 79 VMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMK 138
Query: 176 EVDVDGDGRIDFNGDGYFSFEEFVE 200
+ D + DGRID+ D + F + VE
Sbjct: 139 DGDKNNDGRIDY--DEFLEFMKGVE 161
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 17/104 (16%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMG 206
G IS +L V++ LG++ + EE+++MI EVD DG G +DF+ E + M
Sbjct: 34 GSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFD-----------EFLVMMV 82
Query: 207 ATTEEKTADQEEKELRDAFREVEDIAD------EVSDCVRNTGE 244
+ ++ + + E+EL D FR + AD E+ ++ TGE
Sbjct: 83 RSMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGE 126
>pdb|1LA0|A Chain A, Solution Structure Of Calcium Saturated Cardiac Troponin C
In The Troponin C-Troponin I Complex
Length = 161
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 81/146 (55%), Gaps = 8/146 (5%)
Query: 60 EFKEAFRLFDKDG-DGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYS--- 115
EFK AF +F DG I+ +ELG+VMR LGQ EELQ+M++EVD +G ++
Sbjct: 19 EFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFL 78
Query: 116 -IMNHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMI 174
+M C ++ KN GYI +L+ +LQ GE ++E++IE+++
Sbjct: 79 VMMVRC-MKDDSKGKTEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELM 137
Query: 175 KEVDVDGDGRIDFNGDGYFSFEEFVE 200
K+ D + DGRID+ D + F + VE
Sbjct: 138 KDGDKNNDGRIDY--DEFLEFMKGVE 161
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 11/87 (12%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMG 206
G IS +L V++ LG++ + EE+++MI EVD DG G +DF+ E V +V M
Sbjct: 34 GCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFD-------EFLVMMVRCMK 86
Query: 207 ATTEEKTADQEEKELRDAFREVEDIAD 233
++ KT E+EL D FR + AD
Sbjct: 87 DDSKGKT----EEELSDLFRMFDKNAD 109
>pdb|2LLO|A Chain A, Solution Nmr-Derived Structure Of Calmodulin N-Lobe Bound
With Er Alpha Peptide
Length = 80
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/51 (70%), Positives = 40/51 (78%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G
Sbjct: 9 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG 59
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G IDF
Sbjct: 21 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDF 65
>pdb|3UCT|A Chain A, Structure Of Mn2+-Bound N-Terminal Domain Of Calmodulin In
The Presence Of Zn2+
pdb|3UCT|B Chain B, Structure Of Mn2+-Bound N-Terminal Domain Of Calmodulin In
The Presence Of Zn2+
pdb|3UCW|A Chain A, Structure Of Mg2+ Bound N-Terminal Domain Of Calmodulin
pdb|3UCW|B Chain B, Structure Of Mg2+ Bound N-Terminal Domain Of Calmodulin
pdb|3UCW|C Chain C, Structure Of Mg2+ Bound N-Terminal Domain Of Calmodulin
pdb|3UCW|D Chain D, Structure Of Mg2+ Bound N-Terminal Domain Of Calmodulin
pdb|3UCY|A Chain A, Structure Of Mg2+ Bound N-Terminal Domain Of Calmodulin In
The Presence Of Zn2+
Length = 79
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/51 (70%), Positives = 40/51 (78%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G
Sbjct: 9 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG 59
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G IDF
Sbjct: 21 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDF 65
>pdb|1SW8|A Chain A, Solution Structure Of The N-Terminal Domain Of Human N60d
Calmodulin Refined With Paramagnetism Based Strategy
Length = 79
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/51 (70%), Positives = 40/51 (78%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G
Sbjct: 9 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG 59
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DGDG IDF
Sbjct: 21 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDF 65
>pdb|3B32|A Chain A, Crystal Structure Of Calcium-Saturated Calmodulin
N-Terminal Domain Fragment, Residues 1-75
Length = 75
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/51 (70%), Positives = 40/51 (78%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G
Sbjct: 9 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG 59
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G IDF
Sbjct: 21 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDF 65
>pdb|1AK8|A Chain A, Nmr Solution Structure Of Cerium-Loaded Calmodulin Amino-
Terminal Domain (Ce2-Tr1c), 23 Structures
Length = 76
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/51 (70%), Positives = 40/51 (78%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G
Sbjct: 10 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG 60
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G IDF
Sbjct: 22 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDF 66
>pdb|1F70|A Chain A, Refined Solution Structure Of Calmodulin N-Terminal Domain
pdb|2PQ3|A Chain A, N-Terminal Calmodulin Zn-Trapped Intermediate
pdb|2KUG|A Chain A, Halothane Binds To Druggable Sites In Calcium-Calmodulin:
Solution Structure Of Halothane-Cam N-Terminal Domain
Length = 76
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/51 (70%), Positives = 40/51 (78%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G
Sbjct: 9 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG 59
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G IDF
Sbjct: 21 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDF 65
>pdb|2LQC|A Chain A, Nmr Solution Structure Of A Ca2+-Calmodulin With A Binding
Motif (Nscate) Peptide From The N-Terminal Cytoplasmic
Domain Of The L-Type Voltage-Cated Calcium Channel
Alpha1c Subunit
Length = 77
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/51 (70%), Positives = 40/51 (78%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G
Sbjct: 9 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG 59
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G IDF
Sbjct: 21 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDF 65
>pdb|1J7O|A Chain A, Solution Structure Of Calcium-calmodulin N-terminal Domain
Length = 76
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/51 (70%), Positives = 40/51 (78%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G
Sbjct: 9 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG 59
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G IDF
Sbjct: 21 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDF 65
>pdb|3IFK|A Chain A, Crystal Structure Of Calcium-Saturated Calmodulin
N-Terminal Domain Fragment, Residues 1-90
pdb|3IFK|B Chain B, Crystal Structure Of Calcium-Saturated Calmodulin
N-Terminal Domain Fragment, Residues 1-90
Length = 90
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/51 (70%), Positives = 40/51 (78%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G
Sbjct: 9 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG 59
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 14/84 (16%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G ID F EF+ ++
Sbjct: 21 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID--------FPEFLTMM 72
Query: 203 YNMGATTEEKTADQEEKELRDAFR 226
+ K D EE E+R+AFR
Sbjct: 73 AR-----KMKDTDSEE-EIREAFR 90
>pdb|2RO8|A Chain A, Solution Structure Of Calcium Bound Soybean Calmodulin
Isoform 1 N-Terminal Domain
Length = 79
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/51 (70%), Positives = 39/51 (76%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
I EFKEAF LFDKDGDG IT +ELG VMRSLGQ E ELQ M+ EVD +G
Sbjct: 9 ISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADG 59
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF 187
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G IDF
Sbjct: 21 KDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDF 65
>pdb|2LHH|A Chain A, Solution Structure Of Ca2+-Bound Ycam
Length = 128
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 61/114 (53%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKD +GSI+ EL VMRSLG E E+ ++ E+D++G +S
Sbjct: 9 IAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSEF 68
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIE 171
+ + KN G ISA++L+ VL +GE L++ E+E
Sbjct: 69 LALMSRQLKSNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAELE 122
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 60/108 (55%), Gaps = 18/108 (16%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
K+ G IS+S+L V++ LG SE E+ D++ E+DVDG+ +I+F+ EF+ ++
Sbjct: 21 KDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFS--------EFLALM 72
Query: 203 YNMGATTEEKTADQEEKELRDAFREVEDIADEVSDCVRNTGELREFIV 250
+ + ++ E+EL +AF+ + D+ D + + EL+ +
Sbjct: 73 ------SRQLKSNDSEQELLEAFK----VFDKNGDGLISAAELKHVLT 110
>pdb|3QRX|A Chain A, Chlamydomonas Reinhardtii Centrin Bound To Melittin
Length = 169
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 70/128 (54%), Gaps = 2/128 (1%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNY-SIMN 118
E +EAF LFD DG G+I +EL MR+LG ++EE+++M+ E+D +G ++ +
Sbjct: 29 EIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEEFLT 88
Query: 119 HCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVD 178
A + D N G I+ DLR V + LGE+L+EEE+++MI E D
Sbjct: 89 MMTAKMGERDSREEILKAFRLFDDDNS-GTITIKDLRRVAKELGENLTEEELQEMIAEAD 147
Query: 179 VDGDGRID 186
+ D ID
Sbjct: 148 RNDDNEID 155
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF 187
G I A +L+ ++ LG + +EEI+ MI E+D DG G IDF
Sbjct: 43 GTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDF 83
>pdb|2I08|A Chain A, Solvation Effect In Conformational Changes Of Ef-Hand
Proteins: X-Ray Structure Of Ca2+-Saturated Double
Mutant Q41l-K75i Of N-Domain Of Calmodulin
Length = 78
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/51 (66%), Positives = 39/51 (76%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
I EFKEAF L+DKDGDG+IT +ELG VMRSLG E ELQ M+ EVD +G
Sbjct: 9 IAEFKEAFSLYDKDGDGTITTKELGTVMRSLGLNPTEAELQDMINEVDADG 59
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 31/45 (68%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF 187
K+ G I+ +L V++ LG + +E E++DMI EVD DG+G IDF
Sbjct: 21 KDGDGTITTKELGTVMRSLGLNPTEAELQDMINEVDADGNGTIDF 65
>pdb|2ROA|A Chain A, Solution Structure Of Calcium Bound Soybean Calmodulin
Isoform 4 N-Terminal Domain
Length = 79
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/51 (68%), Positives = 39/51 (76%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
IV+FKEAF LFDKDGDG IT EEL V+RSL Q EEELQ M+ EVD +G
Sbjct: 9 IVDFKEAFGLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMISEVDADG 59
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 33/46 (71%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFN 188
K+ G I+ +L V++ L ++ +EEE++DMI EVD DG+G I+F+
Sbjct: 21 KDGDGCITVEELATVIRSLDQNPTEEELQDMISEVDADGNGTIEFD 66
>pdb|2KSZ|A Chain A, The Solution Structure Of The Magnesium Bound Soybean
Calmod Isoform 4 N-Domain
Length = 76
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/51 (68%), Positives = 39/51 (76%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
IV+FKEAF LFDKDGDG IT EEL V+RSL Q EEELQ M+ EVD +G
Sbjct: 9 IVDFKEAFGLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMISEVDADG 59
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 33/46 (71%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFN 188
K+ G I+ +L V++ L ++ +EEE++DMI EVD DG+G I+F+
Sbjct: 21 KDGDGCITVEELATVIRSLDQNPTEEELQDMISEVDADGNGTIEFD 66
>pdb|2OBH|A Chain A, Centrin-Xpc Peptide
pdb|2OBH|B Chain B, Centrin-Xpc Peptide
Length = 143
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 67/126 (53%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIMNH 119
E +EAF LFD DG G+I +EL MR+LG ++EE+++M+ E+D G N+
Sbjct: 7 EIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGDFLT 66
Query: 120 CGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDV 179
+ + G IS +L+ V + LGE+L++EE+++MI E D
Sbjct: 67 VMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADR 126
Query: 180 DGDGRI 185
DGDG +
Sbjct: 127 DGDGEV 132
>pdb|3KF9|A Chain A, Crystal Structure Of The SdcenSKMLCK COMPLEX
pdb|3KF9|C Chain C, Crystal Structure Of The SdcenSKMLCK COMPLEX
Length = 149
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 72/128 (56%), Gaps = 2/128 (1%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNY-SIMN 118
E +EAF LFD DG G+I +EL MR+LG ++EE+++M+ ++D +G ++ +
Sbjct: 9 EIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMIADIDKDGSGTIDFEEFLQ 68
Query: 119 HCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVD 178
A + D + G IS +L+ V + LGE++++EE+++MI E D
Sbjct: 69 MMTAKMGERDSREEIMKAFRLFDD-DETGKISFKNLKRVAKELGENMTDEELQEMIDEAD 127
Query: 179 VDGDGRID 186
DGDG ++
Sbjct: 128 RDGDGEVN 135
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 8/56 (14%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
G I A +L+ ++ LG + +EEI+ MI ++D DG G ID FEEF++++
Sbjct: 23 GTIDAKELKVAMRALGFEPKKEEIKKMIADIDKDGSGTID--------FEEFLQMM 70
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 13/80 (16%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +AFRLFD D G + ++ ++ T E +E D+D
Sbjct: 82 EIMKAFRLFDDDETGKISFKNLKRVAKELGENMTDE------------ELQEMIDEADRD 129
Query: 72 GDGSITKEELGRVMRSLGQF 91
GDG + +EE R+M+ F
Sbjct: 130 GDGEVNEEEFFRIMKKTSLF 149
>pdb|2LAN|A Chain A, Nmr Structure Of Ca2+-Bound Cabp1 N-Domain With Rdc
pdb|2LAP|A Chain A, Nmr Structure Of Ca2+-Bound Cabp1 C-Domain With Rdc
Length = 167
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 13/150 (8%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYS-- 115
I E +EAFR FDKD DG I +LG MR++G E EL ++ +++++N ++
Sbjct: 24 IEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDF 83
Query: 116 --IMNHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLR-AVLQCLGEDLSEEEIED 172
+M A N G IS S+LR A+ + LG + +IE+
Sbjct: 84 VELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEE 143
Query: 173 MIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
+I++VD++GDGR+D FEEFV ++
Sbjct: 144 IIRDVDLNGDGRVD--------FEEFVRMM 165
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 53/129 (41%), Gaps = 31/129 (24%)
Query: 11 IVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYT------------------------ 45
I E +EAFR FDKD DG + R T
Sbjct: 24 IEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDF 83
Query: 46 -----TTMLYSNSPVFLIVEFKEAFRLFDKDGDGSITKEELGRVMRS-LGQFAREEELQQ 99
+L + + + E ++AFR FD +GDG I+ EL MR LG ++++
Sbjct: 84 VELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEE 143
Query: 100 MLEEVDING 108
++ +VD+NG
Sbjct: 144 IIRDVDLNG 152
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 18/107 (16%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
K+ GYI+ DL ++ +G +E E+ ++ ++ I+ N G+ F++FVE+
Sbjct: 36 KDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQ--------INMNLGGHVDFDDFVEL- 86
Query: 203 YNMGATTEEKTADQ-EEKELRDAFREVEDIAD-EVSDCVRNTGELRE 247
MG +TAD KELRDAFRE + D E+S T ELRE
Sbjct: 87 --MGPKLLAETADMIGVKELRDAFREFDTNGDGEIS-----TSELRE 126
>pdb|3OX5|A Chain A, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|B Chain B, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|C Chain C, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|D Chain D, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|E Chain E, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|F Chain F, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
Length = 153
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 13/150 (8%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYS-- 115
I E +EAFR FDKD DG I +LG MR++G E EL ++ +++++N ++
Sbjct: 10 IEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDF 69
Query: 116 --IMNHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLR-AVLQCLGEDLSEEEIED 172
+M A N G IS S+LR A+ + LG + +IE+
Sbjct: 70 VELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEE 129
Query: 173 MIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
+I++VD++GDGR+D FEEFV ++
Sbjct: 130 IIRDVDLNGDGRVD--------FEEFVRMM 151
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 53/129 (41%), Gaps = 31/129 (24%)
Query: 11 IVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYT------------------------ 45
I E +EAFR FDKD DG + R T
Sbjct: 10 IEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDF 69
Query: 46 -----TTMLYSNSPVFLIVEFKEAFRLFDKDGDGSITKEELGRVMRS-LGQFAREEELQQ 99
+L + + + E ++AFR FD +GDG I+ EL MR LG ++++
Sbjct: 70 VELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEE 129
Query: 100 MLEEVDING 108
++ +VD+NG
Sbjct: 130 IIRDVDLNG 138
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 18/107 (16%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
K+ GYI+ DL ++ +G +E E+ ++ ++ I+ N G+ F++FVE+
Sbjct: 22 KDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQ--------INMNLGGHVDFDDFVEL- 72
Query: 203 YNMGATTEEKTADQ-EEKELRDAFREVEDIAD-EVSDCVRNTGELRE 247
MG +TAD KELRDAFRE + D E+S T ELRE
Sbjct: 73 --MGPKLLAETADMIGVKELRDAFREFDTNGDGEIS-----TSELRE 112
>pdb|3OX6|A Chain A, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|B Chain B, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|C Chain C, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|D Chain D, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|E Chain E, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|F Chain F, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
Length = 153
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 76/150 (50%), Gaps = 13/150 (8%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYS-- 115
I E +EAFR FDKD DG I +LG MR++G E EL ++ +++++N ++
Sbjct: 10 IEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDF 69
Query: 116 --IMNHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQC-LGEDLSEEEIED 172
+M A N G IS S+LR ++ LG + +IE+
Sbjct: 70 VELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRALLGHQVGHRDIEE 129
Query: 173 MIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
+I++VD++GDGR+D FEEFV ++
Sbjct: 130 IIRDVDLNGDGRVD--------FEEFVRMM 151
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 54/129 (41%), Gaps = 31/129 (24%)
Query: 11 IVEFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYT------------------------ 45
I E +EAFR FDKD DG + R T
Sbjct: 10 IEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDF 69
Query: 46 -----TTMLYSNSPVFLIVEFKEAFRLFDKDGDGSITKEELGRVMRS-LGQFAREEELQQ 99
+L + + + E ++AFR FD +GDG I+ EL MR+ LG ++++
Sbjct: 70 VELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRALLGHQVGHRDIEE 129
Query: 100 MLEEVDING 108
++ +VD+NG
Sbjct: 130 IIRDVDLNG 138
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 18/107 (16%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
K+ GYI+ DL ++ +G +E E+ ++ ++ I+ N G+ F++FVE+
Sbjct: 22 KDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQ--------INMNLGGHVDFDDFVEL- 72
Query: 203 YNMGATTEEKTADQ-EEKELRDAFREVEDIAD-EVSDCVRNTGELRE 247
MG +TAD KELRDAFRE + D E+S T ELRE
Sbjct: 73 --MGPKLLAETADMIGVKELRDAFREFDTNGDGEIS-----TSELRE 112
>pdb|2BL0|B Chain B, Physarum Polycephalum Myosin Ii Regulatory Domain
Length = 145
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 64/128 (50%), Gaps = 2/128 (1%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIMNH 119
+ +E F++FDKD DG ++ EELG +RSLG+ EL + + +N K+ +
Sbjct: 6 QIQECFQIFDKDNDGKVSIEELGSALRSLGKNPTNAELNTI--KGQLNAKEFDLATFKTV 63
Query: 120 CGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDV 179
+ K G I ++LR +L LG+ L+ E+E+++KEV V
Sbjct: 64 YRKPIKTPTEQSKEMLDAFRALDKEGNGTIQEAELRQLLLNLGDALTSSEVEELMKEVSV 123
Query: 180 DGDGRIDF 187
GDG I++
Sbjct: 124 SGDGAINY 131
>pdb|1F54|A Chain A, Solution Structure Of The Apo N-Terminal Domain Of Yeast
Calmodulin
pdb|1F55|A Chain A, Solution Structure Of The Calcium Bound N-Terminal Domain
Of Yeast Calmodulin
Length = 77
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 38/58 (65%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYS 115
I EFKEAF LFDKD +GSI+ EL VMRSLG E E+ ++ E+D++G +S
Sbjct: 9 IAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFS 66
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 33/46 (71%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFN 188
K+ G IS+S+L V++ LG SE E+ D++ E+DVDG+ +I+F+
Sbjct: 21 KDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFS 66
>pdb|2KN2|A Chain A, Solution Structure Of The C-Terminal Domain Of Soybean
Calmodulin Isoform 4 Fused With The Calmodulin-Binding
Domain Of Ntmkp1
Length = 92
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%), Gaps = 8/60 (13%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
K+ GYISAS+LR V+ LGE L++EE+E MIKE D+DGDG+++ +EEFV+++
Sbjct: 20 KDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVN--------YEEFVKMM 71
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 39/55 (70%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNY 114
E KEAF++FDKD +G I+ EL VM +LG+ +EE++QM++E D++G NY
Sbjct: 10 ELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNY 64
>pdb|2ROB|A Chain A, Solution Structure Of Calcium Bound Soybean Calmodulin
Isoform 4 C-Terminal Domain
Length = 70
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%), Gaps = 8/60 (13%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
K+ GYISAS+LR V+ LGE L++EE+E MIKE D+DGDG++ ++EEFV+++
Sbjct: 15 KDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQV--------NYEEFVKMM 66
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 39/55 (70%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNY 114
E KEAF++FDKD +G I+ EL VM +LG+ +EE++QM++E D++G NY
Sbjct: 5 ELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNY 59
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 13/77 (16%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E KEAF++FDKD +G + A R T E ++ + D D
Sbjct: 5 ELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDE------------EVEQMIKEADLD 52
Query: 72 GDGSITKEELGRVMRSL 88
GDG + EE ++M ++
Sbjct: 53 GDGQVNYEEFVKMMMTV 69
>pdb|1M46|A Chain A, Crystal Structure Of Mlc1p Bound To Iq4 Of Myo2p, A Class
V Myosin
pdb|1M45|A Chain A, Crystal Structure Of Mlc1p Bound To Iq2 Of Myo2p, A Class
V Myosin
pdb|1N2D|A Chain A, Ternary Complex Of Mlc1p Bound To Iq2 And Iq3 Of Myo2p, A
Class V Myosin
pdb|1N2D|B Chain B, Ternary Complex Of Mlc1p Bound To Iq2 And Iq3 Of Myo2p, A
Class V Myosin
Length = 148
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 8/133 (6%)
Query: 62 KEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIMNHCG 121
K+ F LFDK G G+I K+ LG +R++G + +L Q + D + + A + ++ G
Sbjct: 7 KDIFTLFDKKGQGAIAKDSLGDYLRAIG-YNPTNQLVQDIINADSSLRDASSLTLDQITG 65
Query: 122 AV-VNA--LDXXXXXXXXXXXXX----HKNYRGYISASDLRAVLQCLGEDLSEEEIEDMI 174
+ VN LD K G +S DLR +L LGE L++ E+++++
Sbjct: 66 LIEVNEKELDATTKAKTEDFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELL 125
Query: 175 KEVDVDGDGRIDF 187
K V+VD +G ID+
Sbjct: 126 KGVEVDSNGEIDY 138
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLE--EVDING 108
+F +AF++FDK+ G ++ +L ++ LG+ + E+ ++L+ EVD NG
Sbjct: 84 DFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNG 134
>pdb|3FWB|A Chain A, Sac3:sus1:cdc31 Complex
pdb|3FWC|A Chain A, Sac3:sus1:cdc31 Complex
pdb|3FWC|E Chain E, Sac3:sus1:cdc31 Complex
pdb|3FWC|I Chain I, Sac3:sus1:cdc31 Complex
pdb|3FWC|M Chain M, Sac3:sus1:cdc31 Complex
Length = 161
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 66/133 (49%), Gaps = 8/133 (6%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYS---- 115
E EAF LFD + DG + EL M++LG + E+ +++E D G+ Y
Sbjct: 24 EIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLIDEYDSEGRHLMKYDDFYI 83
Query: 116 IMNHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIK 175
+M + LD ++ G IS +LR V + LGE L++EE+ MI+
Sbjct: 84 VMGEKILKRDPLDEIKRAFQLFDD----DHTGKISIKNLRRVAKELGETLTDEELRAMIE 139
Query: 176 EVDVDGDGRIDFN 188
E D+DGDG I+ N
Sbjct: 140 EFDLDGDGEINEN 152
>pdb|1AVS|A Chain A, X-Ray Crystallographic Study Of Calcium-Saturated N-
Terminal Domain Of Troponin C
pdb|1AVS|B Chain B, X-Ray Crystallographic Study Of Calcium-Saturated N-
Terminal Domain Of Troponin C
pdb|1BLQ|A Chain A, Structure And Interaction Site Of The Regulatory Domain Of
Troponin-C When Complexed With The 96-148 Region Of
Troponin-I, Nmr, 29 Structures
pdb|1SKT|A Chain A, Solution Structure Of Apo N-Domain Of Troponin C, Nmr, 40
Structures
pdb|1TNP|A Chain A, Structures Of The Apo And Calcium Troponin-C Regulatory
Domains: The Muscle Contraction Switch
pdb|1TNQ|A Chain A, Structures Of The Apo And Calcium Troponin-C Regulatory
Domains: The Muscle Contraction Switch
pdb|1ZAC|A Chain A, N-Domain Of Troponin C From Chicken Skeletal Muscle, Nmr,
Minimized Average Structure
Length = 90
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 37/52 (71%)
Query: 57 LIVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
+I EFK AF +FD DG G I+ +ELG VMR LGQ +EEL ++EEVD +G
Sbjct: 18 MIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDG 69
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 30/41 (73%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF 187
G IS +L V++ LG++ ++EE++ +I+EVD DG G IDF
Sbjct: 35 GDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDF 75
>pdb|1TRF|A Chain A, Solution Structure Of The Tr1c Fragment Of Skeletal Muscle
Troponin-C
Length = 76
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 37/52 (71%)
Query: 57 LIVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
+I EFK AF +FD DG G I+ +ELG VMR LGQ +EEL ++EEVD +G
Sbjct: 7 MIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDG 58
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 30/41 (73%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF 187
G IS +L V++ LG++ ++EE++ +I+EVD DG G IDF
Sbjct: 24 GDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDF 64
>pdb|2RRT|A Chain A, Solution Structure Of Magnesium-Bound Form Of Calmodulin
C-Domain E104dE140D MUTANT
Length = 72
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 45/60 (75%), Gaps = 8/60 (13%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
K+ GYISA+DLR V+ LGE L++EE+++MI+E D+DGDG++ ++E+FV+++
Sbjct: 18 KDGNGYISAADLRHVMTNLGEKLTDEEVDEMIREADIDGDGQV--------NYEDFVQMM 69
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNY 114
E +EAFR+FDKDG+G I+ +L VM +LG+ +EE+ +M+ E DI+G NY
Sbjct: 8 EIREAFRVFDKDGNGYISAADLRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNY 62
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+FDKDG+G + A R T E E R D D
Sbjct: 8 EIREAFRVFDKDGNGYISAADLRHVMTNLGEKLTDE------------EVDEMIREADID 55
Query: 72 GDGSITKEELGRVMRS 87
GDG + E+ ++M +
Sbjct: 56 GDGQVNYEDFVQMMTA 71
>pdb|2RO9|A Chain A, Solution Structure Of Calcium Bound Soybean Calmodulin
Isoform 1 C-Terminal Domain
Length = 69
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 45/60 (75%), Gaps = 8/60 (13%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
K+ G+ISA++LR V+ LGE L++EE+++MI+E DVDGDG+I ++EEFV+++
Sbjct: 15 KDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQI--------NYEEFVKVM 66
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 37/55 (67%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNY 114
E KEAFR+FDKD +G I+ EL VM +LG+ +EE+ +M+ E D++G NY
Sbjct: 5 ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINY 59
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 32/76 (42%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E KEAFR+FDKD +G + A R T E E R D D
Sbjct: 5 ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDE------------EVDEMIREADVD 52
Query: 72 GDGSITKEELGRVMRS 87
GDG I EE +VM +
Sbjct: 53 GDGQINYEEFVKVMMA 68
>pdb|1YRU|B Chain B, Crystal Structure Analysis Of The Adenylyl Cyclaes
Catalytic Domain Of Adenylyl Cyclase Toxin Of Bordetella
Pertussis In Presence Of C-Terminal Calmodulin And 1mm
Calcium Chloride
pdb|1YRT|B Chain B, Crystal Structure Analysis Of The Adenylyl Cyclaes
Catalytic Domain Of Adenylyl Cyclase Toxin Of Bordetella
Pertussis In Presence Of C-Terminal Calmodulin
Length = 74
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 45/60 (75%), Gaps = 8/60 (13%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
K+ GYISA++LR V+ LGE L++EE+++MI+E D+DGDG++ ++EEFV+++
Sbjct: 20 KDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQV--------NYEEFVQMM 71
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNY 114
E +EAFR+FDKDG+G I+ EL VM +LG+ +EE+ +M+ E DI+G NY
Sbjct: 10 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNY 64
Score = 34.7 bits (78), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+FDKDG+G + A R T E E R D D
Sbjct: 10 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE------------EVDEMIREADID 57
Query: 72 GDGSITKEELGRVMRS 87
GDG + EE ++M +
Sbjct: 58 GDGQVNYEEFVQMMTA 73
>pdb|1CMF|A Chain A, Nmr Solution Structure Of Apo Calmodulin Carboxy-Terminal
Domain
pdb|1CMG|A Chain A, Nmr Solution Structure Of Calcium-Loaded Calmodulin
Carboxy- Terminal Domain
Length = 73
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 45/60 (75%), Gaps = 8/60 (13%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
K+ GYISA++LR V+ LGE L++EE+++MI+E D+DGDG++ ++EEFV+++
Sbjct: 19 KDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQV--------NYEEFVQMM 70
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNY 114
E +EAFR+FDKDG+G I+ EL VM +LG+ +EE+ +M+ E DI+G NY
Sbjct: 9 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNY 63
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+FDKDG+G + A R T E E R D D
Sbjct: 9 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE------------EVDEMIREADID 56
Query: 72 GDGSITKEELGRVMRS 87
GDG + EE ++M +
Sbjct: 57 GDGQVNYEEFVQMMTA 72
>pdb|2KZ2|A Chain A, Calmodulin, C-Terminal Domain, F92e Mutant
Length = 94
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 45/60 (75%), Gaps = 8/60 (13%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
K+ GYISA++LR V+ LGE L++EE+++MI+E D+DGDG++ ++EEFV+++
Sbjct: 40 KDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQV--------NYEEFVQMM 91
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 37/55 (67%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNY 114
E +EAFR+ DKDG+G I+ EL VM +LG+ +EE+ +M+ E DI+G NY
Sbjct: 30 EIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNY 84
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+ DKDG+G + A R T E E R D D
Sbjct: 30 EIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDE------------EVDEMIREADID 77
Query: 72 GDGSITKEELGRVMRS 87
GDG + EE ++M +
Sbjct: 78 GDGQVNYEEFVQMMTA 93
>pdb|3J04|C Chain C, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
pdb|3J04|F Chain F, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
Length = 148
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 72/151 (47%), Gaps = 15/151 (9%)
Query: 59 VEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQML-----EEVDINGKKAGN 113
EFKEAF+LFD+ GDG I + G VMR+LGQ E+ ++L +E+++ K
Sbjct: 7 AEFKEAFQLFDRTGDGKILYSQCGDVMRALGQNPTNAEVMKVLGNPKSDEMNLKTLKFEQ 66
Query: 114 YSIMNHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDM 173
+ M A N K G + +++R VL LGE ++EEE+E +
Sbjct: 67 FLPMMQTIA-KNKDQGCFEDYVEGLRVFDKEGNGTVMGAEIRHVLVTLGEKMTEEEVEQL 125
Query: 174 IKEVDVDGDGRIDFNGDGYFSFEEFVEIVYN 204
+ G D N G ++EE V +V +
Sbjct: 126 VA-------GHEDSN--GCINYEELVRMVLS 147
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 30/120 (25%)
Query: 12 VEFKEAFRLFDKDGDG----VQARHFRQXXXXXXXXYTTTMLYSNS-------------- 53
EFKEAF+LFD+ GDG Q + + N
Sbjct: 7 AEFKEAFQLFDRTGDGKILYSQCGDVMRALGQNPTNAEVMKVLGNPKSDEMNLKTLKFEQ 66
Query: 54 --PVFLIV----------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQML 101
P+ + ++ E R+FDK+G+G++ E+ V+ +LG+ EEE++Q++
Sbjct: 67 FLPMMQTIAKNKDQGCFEDYVEGLRVFDKEGNGTVMGAEIRHVLVTLGEKMTEEEVEQLV 126
>pdb|1FW4|A Chain A, Crystal Structure Of E. Coli Fragment Tr2c From Calmodulin
To 1.7 A Resolution
pdb|2LQP|A Chain A, Nmr Solution Structure Of The Ca2+-Calmodulin C-Terminal
Domain In A Complex With A Peptide (Nscate) From The
L-Type Voltage-Gated Calcium Channel Alpha1c Subunit
Length = 71
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 45/60 (75%), Gaps = 8/60 (13%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
K+ GYISA++LR V+ LGE L++EE+++MI+E D+DGDG++ ++EEFV+++
Sbjct: 17 KDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQV--------NYEEFVQMM 68
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNY 114
E +EAFR+FDKDG+G I+ EL VM +LG+ +EE+ +M+ E DI+G NY
Sbjct: 7 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNY 61
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+FDKDG+G + A R T E E R D D
Sbjct: 7 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE------------EVDEMIREADID 54
Query: 72 GDGSITKEELGRVMRS 87
GDG + EE ++M +
Sbjct: 55 GDGQVNYEEFVQMMTA 70
>pdb|1BR1|B Chain B, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|D Chain D, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|F Chain F, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|H Chain H, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR4|B Chain B, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|D Chain D, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|F Chain F, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|H Chain H, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1I84|T Chain T, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|W Chain W, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|3DTP|C Chain C, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
pdb|3DTP|D Chain D, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 150
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 72/151 (47%), Gaps = 15/151 (9%)
Query: 59 VEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQML-----EEVDINGKKAGN 113
EFKEAF+LFD+ GDG I + G VMR+LGQ E+ ++L +E+++ K
Sbjct: 9 AEFKEAFQLFDRTGDGKILYSQCGDVMRALGQNPTNAEVMKVLGNPKSDEMNLKTLKFEQ 68
Query: 114 YSIMNHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDM 173
+ M A N K G + +++R VL LGE ++EEE+E +
Sbjct: 69 FLPMMQTIA-KNKDQGCFEDYVEGLRVFDKEGNGTVMGAEIRHVLVTLGEKMTEEEVEQL 127
Query: 174 IKEVDVDGDGRIDFNGDGYFSFEEFVEIVYN 204
+ G D N G ++EE V +V +
Sbjct: 128 VA-------GHEDSN--GCINYEELVRMVLS 149
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 30/120 (25%)
Query: 12 VEFKEAFRLFDKDGDG----VQARHFRQXXXXXXXXYTTTMLYSNS-------------- 53
EFKEAF+LFD+ GDG Q + + N
Sbjct: 9 AEFKEAFQLFDRTGDGKILYSQCGDVMRALGQNPTNAEVMKVLGNPKSDEMNLKTLKFEQ 68
Query: 54 --PVFLIV----------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQML 101
P+ + ++ E R+FDK+G+G++ E+ V+ +LG+ EEE++Q++
Sbjct: 69 FLPMMQTIAKNKDQGCFEDYVEGLRVFDKEGNGTVMGAEIRHVLVTLGEKMTEEEVEQLV 128
>pdb|1F71|A Chain A, Refined Solution Structure Of Calmodulin C-Terminal Domain
pdb|1J7P|A Chain A, Solution Structure Of Calcium Calmodulin C-Terminal Domain
pdb|2K3S|B Chain B, Haddock-Derived Structure Of The Ch-Domain Of The
Smoothelin-Like 1 Complexed With The C-Domain Of
Apocalmodulin
pdb|2KUH|A Chain A, Halothane Binds To Druggable Sites In Calcium-Calmodulin:
Solution Structure Of Halothane-Cam C-Terminal Domain
pdb|2LLQ|A Chain A, Solution Nmr-Derived Structure Of Calmodulin C-Lobe Bound
With Er Alpha Peptide
Length = 67
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 45/60 (75%), Gaps = 8/60 (13%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
K+ GYISA++LR V+ LGE L++EE+++MI+E D+DGDG++ ++EEFV+++
Sbjct: 13 KDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQV--------NYEEFVQMM 64
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNY 114
E +EAFR+FDKDG+G I+ EL VM +LG+ +EE+ +M+ E DI+G NY
Sbjct: 3 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNY 57
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+FDKDG+G + A R T E E R D D
Sbjct: 3 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE------------EVDEMIREADID 50
Query: 72 GDGSITKEELGRVMRS 87
GDG + EE ++M +
Sbjct: 51 GDGQVNYEEFVQMMTA 66
>pdb|1ZOT|B Chain B, Crystal Structure Analysis Of The CyaaC-Cam With Pmeapp
Length = 69
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 45/60 (75%), Gaps = 8/60 (13%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
K+ GYISA++LR V+ LGE L++EE+++MI+E D+DGDG++ ++EEFV+++
Sbjct: 16 KDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQV--------NYEEFVQMM 67
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNY 114
E +EAFR+FDKDG+G I+ EL VM +LG+ +EE+ +M+ E DI+G NY
Sbjct: 6 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNY 60
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+FDKDG+G + A R T E E R D D
Sbjct: 6 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE------------EVDEMIREADID 53
Query: 72 GDGSITKEELGRVMRS 87
GDG + EE ++M +
Sbjct: 54 GDGQVNYEEFVQMMTA 69
>pdb|2COL|B Chain B, Crystal Structure Analysis Of CyaaC-Cam With Pyrophosphate
Length = 67
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 45/60 (75%), Gaps = 8/60 (13%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
K+ GYISA++LR V+ LGE L++EE+++MI+E D+DGDG++ ++EEFV+++
Sbjct: 16 KDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQV--------NYEEFVQMM 67
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNY 114
E +EAFR+FDKDG+G I+ EL VM +LG+ +EE+ +M+ E DI+G NY
Sbjct: 6 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNY 60
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 13/74 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFR+FDKDG+G + A R T E E R D D
Sbjct: 6 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE------------EVDEMIREADID 53
Query: 72 GDGSITKEELGRVM 85
GDG + EE ++M
Sbjct: 54 GDGQVNYEEFVQMM 67
>pdb|1SMG|A Chain A, Calcium-Bound E41a Mutant Of The N-Domain Of Chicken
Troponin C, Nmr, 40 Structures
Length = 90
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 36/52 (69%)
Query: 57 LIVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
+I EFK AF +FD DG G I+ + LG VMR LGQ +EEL ++EEVD +G
Sbjct: 18 MIAEFKAAFDMFDADGGGDISTKALGTVMRMLGQNPTKEELDAIIEEVDEDG 69
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 29/41 (70%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF 187
G IS L V++ LG++ ++EE++ +I+EVD DG G IDF
Sbjct: 35 GDISTKALGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDF 75
>pdb|2LV7|A Chain A, Solution Structure Of Ca2+-Bound Cabp7 N-Terminal Doman
Length = 100
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 38/49 (77%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
E +EAF++FD+DG+G I+K+ELG MRSLG E EL+ +++ +D++G
Sbjct: 37 EIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRLDMDG 85
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 8/56 (14%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
G+IS +L ++ LG +E E+E +I+ +D+DGDG++D FEEFV ++
Sbjct: 51 GFISKQELGTAMRSLGYMPNEVELEVIIQRLDMDGDGQVD--------FEEFVTLL 98
>pdb|3J04|B Chain B, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
pdb|3J04|E Chain E, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
Length = 143
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 66/131 (50%), Gaps = 6/131 (4%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSI- 116
I EFKEAF + D++ DG I KE+L ++ S+G+ +E L+ M+ E N+++
Sbjct: 6 IQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSEA----PGPINFTMF 61
Query: 117 MNHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKE 176
+ G +N D + G+I LR +L +G+ ++EE+++M +E
Sbjct: 62 LTMFGEKLNGTDPEDVIRNAFACFDEE-ASGFIHEDHLRELLTTMGDRFTDEEVDEMYRE 120
Query: 177 VDVDGDGRIDF 187
+D G ++
Sbjct: 121 APIDKKGNFNY 131
>pdb|1R2U|A Chain A, Nmr Structure Of The N Domain Of Trout Cardiac Troponin C
At 30 C
pdb|1R6P|A Chain A, Nmr Structure Of The N-Terminal Domain Of Trout Cardiac
Troponin C At 7 C
Length = 89
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 60 EFKEAFRLFDKDG-DGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
EFK AF +F +D DG I+ +ELG+VMR LGQ EELQ+M++EVD +G
Sbjct: 19 EFKAAFDIFIQDAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDG 68
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFN 188
G IS +L V++ LG++ + EE+++MI EVD DG G +DF+
Sbjct: 34 GCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFD 75
>pdb|4GJG|A Chain A, Crystal Structure Of The Amino-terminal Domain Of Human
Cardiac Troponin C Mutant D2n/v28i/l29q/g30d (niqd) In
Complex With Cadmium
Length = 89
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 60 EFKEAFRLFDKDG-DGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
EFK AF +F +D DG I+ +ELG+VMR LGQ EELQ+M++EVD +G
Sbjct: 19 EFKAAFDIFIQDAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDG 68
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFN 188
G IS +L V++ LG++ + EE+++MI EVD DG G +DF+
Sbjct: 34 GCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFD 75
>pdb|1GGW|A Chain A, Cdc4p From Schizosaccharomyces Pombe
Length = 140
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 15/144 (10%)
Query: 61 FKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIMNHC 120
+K+AF LFD+ G G I K +G ++R+ GQ E+ ++ + ++N
Sbjct: 7 YKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEITEIESTLPAEVDMEQFLQVLNRP 66
Query: 121 GAVVNALDXXXXXXXXXX--XXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVD 178
N D K+ G I +LR VL LGE LS EE+++++K V
Sbjct: 67 ----NGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVP 122
Query: 179 VDGDGRIDFNGDGYFSFEEFVEIV 202
V DG ++ +FV+++
Sbjct: 123 VK---------DGMVNYHDFVQMI 137
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDI 106
EF + F++FDKD G I EL V+ SLG+ EE+ ++L+ V +
Sbjct: 77 EFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPV 123
>pdb|1OE9|B Chain B, Crystal Structure Of Myosin V Motor With Essential Light
Chain - Nucleotide-Free
pdb|1W7I|B Chain B, Crystal Structure Of Myosin V Motor Without Nucleotide
Soaked In 10 Mm Mgadp
pdb|1W7J|B Chain B, Crystal Structure Of Myosin V Motor With Essential Light
Chain + Adp-Befx - Near Rigor
Length = 151
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 5/132 (3%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQML---EEVDINGKKAGNYSI 116
EFKEAF LFD+ GDG I + G VMR+LGQ E+ ++L + ++ ++ +
Sbjct: 11 EFKEAFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSRRVDFETF 70
Query: 117 MNHCGAVV-NALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIK 175
+ AV N K G + ++LR VL LGE ++EEE+E ++
Sbjct: 71 LPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVLA 130
Query: 176 EVDVDGDGRIDF 187
+ D +G I++
Sbjct: 131 GHE-DSNGCINY 141
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 49/119 (41%), Gaps = 30/119 (25%)
Query: 13 EFKEAFRLFDKDGDG----VQARHFRQXXXXXXXXYTTTMLYSNS--------------- 53
EFKEAF LFD+ GDG Q + + N
Sbjct: 11 EFKEAFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSRRVDFETF 70
Query: 54 -PVFLIV----------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQML 101
P+ V ++ E FR+FDK+G+G + EL V+ +LG+ EEE++ +L
Sbjct: 71 LPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVL 129
>pdb|1NPQ|A Chain A, Structure Of A Rhodamine-Labeled N-Domain Troponin C
Mutant (Ca2+ Saturated) In Complex With Skeletal
Troponin I 115- 131
Length = 90
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 35/52 (67%)
Query: 57 LIVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
+I EFK AF +FD DG G I+ +ELG VMR LGQ + EL ++ EVD +G
Sbjct: 18 MIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKCELDAIICEVDEDG 69
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF 187
G IS +L V++ LG++ ++ E++ +I EVD DG G IDF
Sbjct: 35 GDISTKELGTVMRMLGQNPTKCELDAIICEVDEDGSGTIDF 75
>pdb|2W4A|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 145
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 77/152 (50%), Gaps = 13/152 (8%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQML---EEVDINGKKAGNY 114
I +FKEAF LFD+ GD IT ++G ++R+LGQ E+ ++L + ++N KK
Sbjct: 3 INDFKEAFLLFDRTGDAKITLSQVGDIVRALGQNPTNAEINKILGNPSKEEMNAKKITFE 62
Query: 115 SIMNHCGAVVNALDXXXXXXXXXXXXXH-KNYRGYISASDLRAVLQCLGEDLSEEEIEDM 173
+ A N D K G + ++LR VL LGE ++EEE+E++
Sbjct: 63 EFLPMLQAAANNKDQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEEL 122
Query: 174 IKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNM 205
+K G+ D N G ++E FV+ + ++
Sbjct: 123 MK-------GQEDSN--GCINYEAFVKHIMSV 145
>pdb|2CTN|A Chain A, Structure Of Calcium-Saturated Cardiac Troponin C, Nmr, 30
Structures
Length = 89
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 60 EFKEAFRLFDKDG-DGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
EFK AF +F DGSI+ +ELG+VMR LGQ EELQ+M++EVD +G
Sbjct: 19 EFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDG 68
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFN 188
G IS +L V++ LG++ + EE+++MI EVD DG G +DF+
Sbjct: 34 GSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFD 75
>pdb|2B1U|A Chain A, Solution Structure Of Calmodulin-Like Skin Protein C
Terminal Domain
Length = 71
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 34/55 (61%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNY 114
+ + AFR FD+DGDG IT +EL R M LGQ +EEL M+ E D++ NY
Sbjct: 7 DLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNY 61
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 30/41 (73%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF 187
G+I+ +LR + LG+ L +EE++ MI+E DVD DGR+++
Sbjct: 21 GHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNY 61
>pdb|2GV5|A Chain A, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2GV5|B Chain B, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2GV5|D Chain D, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2GV5|E Chain E, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2DOQ|A Chain A, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2DOQ|B Chain B, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2DOQ|C Chain C, Crystal Structure Of Sfi1pCDC31P COMPLEX
Length = 161
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 63/133 (47%), Gaps = 8/133 (6%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYS---- 115
E EAF LFD + DG + EL ++LG + E+ +++E D G+ Y
Sbjct: 24 EIYEAFSLFDXNNDGFLDYHELKVAXKALGFELPKREILDLIDEYDSEGRHLXKYDDFYI 83
Query: 116 IMNHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIK 175
+ + LD ++ G IS +LR V + LGE L++EE+ I+
Sbjct: 84 VXGEKILKRDPLDEIKRAFQLFDD----DHTGKISIKNLRRVAKELGETLTDEELRAXIE 139
Query: 176 EVDVDGDGRIDFN 188
E D+DGDG I+ N
Sbjct: 140 EFDLDGDGEINEN 152
>pdb|1S6I|A Chain A, Ca2+-Regulatory Region (Cld) From Soybean
Calcium-Dependent Protein Kinase-Alpha (Cdpk) In The
Presence Of Ca2+ And The Junction Domain (Jd)
Length = 188
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 3/127 (2%)
Query: 61 FKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIMNHC 120
KE F++ D D G+IT +EL ++ +G E E++ +++ DI+ +Y
Sbjct: 12 LKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAA 71
Query: 121 GAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVD 180
+N L+ K+ GYI+ +++ + G L + I+DMIKE+D D
Sbjct: 72 TVHLNKLE-REENLVSAFSYFDKDGSGYITLDEIQQACKDFG--LDDIHIDDMIKEIDQD 128
Query: 181 GDGRIDF 187
DG+ID+
Sbjct: 129 NDGQIDY 135
>pdb|2KFX|T Chain T, Structure Of The N-Terminal Domain Of Human Cardiac
Troponin C Bound To Calcium Ion And To The Inhibitor W7
Length = 89
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 60 EFKEAFRLFDKDG-DGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
EFK AF +F DGSI+ +ELG+VMR LGQ EELQ+M++EVD +G
Sbjct: 19 EFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDG 68
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFN 188
G IS +L V++ LG++ + EE+++MI EVD DG G +DF+
Sbjct: 34 GSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFD 75
>pdb|1WRK|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human
Cardiac Troponin C In Complex With Trifluoperazine
(Orthrombic Crystal Form)
pdb|1WRK|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human
Cardiac Troponin C In Complex With Trifluoperazine
(Orthrombic Crystal Form)
pdb|1WRL|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human
Cardiac Troponin C In Complex With Trifluoperazine
(Monoclinic Crystal Form)
pdb|1WRL|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human
Cardiac Troponin C In Complex With Trifluoperazine
(Monoclinic Crystal Form)
pdb|1WRL|C Chain C, Crystal Structure Of The N-Terminal Domain Of Human
Cardiac Troponin C In Complex With Trifluoperazine
(Monoclinic Crystal Form)
pdb|1WRL|D Chain D, Crystal Structure Of The N-Terminal Domain Of Human
Cardiac Troponin C In Complex With Trifluoperazine
(Monoclinic Crystal Form)
pdb|1WRL|E Chain E, Crystal Structure Of The N-Terminal Domain Of Human
Cardiac Troponin C In Complex With Trifluoperazine
(Monoclinic Crystal Form)
pdb|1WRL|F Chain F, Crystal Structure Of The N-Terminal Domain Of Human
Cardiac Troponin C In Complex With Trifluoperazine
(Monoclinic Crystal Form)
Length = 88
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 60 EFKEAFRLFDKDG-DGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
EFK AF +F DGSI+ +ELG+VMR LGQ EELQ+M++EVD +G
Sbjct: 19 EFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDG 68
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFN 188
G IS +L V++ LG++ + EE+++MI EVD DG G +DF+
Sbjct: 34 GSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFD 75
>pdb|4GJF|A Chain A, Crystal Structure Of The Amino-terminal Domain Of Human
Cardiac Troponin C Mutant L29q In Complex With Cadmium
Length = 89
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 60 EFKEAFRLFDKDG-DGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
EFK AF +F + DG I+ +ELG+VMR LGQ EELQ+M++EVD +G
Sbjct: 19 EFKAAFDIFVQGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDG 68
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFN 188
G IS +L V++ LG++ + EE+++MI EVD DG G +DF+
Sbjct: 34 GCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFD 75
>pdb|2KXW|A Chain A, Structure Of The C-Domain Fragment Of Apo Calmodulin Bound
To The Iq Motif Of Nav1.2
Length = 73
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 41/58 (70%), Gaps = 8/58 (13%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYN 204
G ISA++LR V+ LGE L+++E+++MI+E D+DGDG I ++EEFV ++ +
Sbjct: 23 GLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHI--------NYEEFVRMMVS 72
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 37/55 (67%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNY 114
E EAF++FD+DG+G I+ EL VM +LG+ ++E+ +M+ E DI+G NY
Sbjct: 9 ELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINY 63
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 32/76 (42%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E EAF++FD+DG+G + A R T E E R D D
Sbjct: 9 ELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDD------------EVDEMIREADID 56
Query: 72 GDGSITKEELGRVMRS 87
GDG I EE R+M S
Sbjct: 57 GDGHINYEEFVRMMVS 72
>pdb|2JNF|A Chain A, Solution Structure Of Fly Troponin C, Isoform F1
Length = 158
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 5/129 (3%)
Query: 64 AFRLFD-KDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIMNHCGA 122
AFR F+ +G G ++ +++G ++ LG + ++Q+++E D G ++ GA
Sbjct: 18 AFRDFETPEGSGRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPFGNGDIDFDSFKIIGA 77
Query: 123 VVNALDXXXXXXXXXXXXXHKNY----RGYISASDLRAVLQCLGEDLSEEEIEDMIKEVD 178
+ + Y GYIS +R +L L E LS E+++ MI E+D
Sbjct: 78 RFLGEEVNPEQMQQELREAFRLYDKEGNGYISTDVMREILAELDETLSSEDLDAMIDEID 137
Query: 179 VDGDGRIDF 187
DG G +DF
Sbjct: 138 ADGSGTVDF 146
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 38/62 (61%)
Query: 53 SPVFLIVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAG 112
+P + E +EAFRL+DK+G+G I+ + + ++ L + E+L M++E+D +G
Sbjct: 85 NPEQMQQELREAFRLYDKEGNGYISTDVMREILAELDETLSSEDLDAMIDEIDADGSGTV 144
Query: 113 NY 114
++
Sbjct: 145 DF 146
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMG 206
G +S + +L+ LG ++ I +I E D G+G IDF+ SF+ +
Sbjct: 29 GRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPFGNGDIDFD-----SFK-----IIGAR 78
Query: 207 ATTEEKTADQEEKELRDAFR 226
EE +Q ++ELR+AFR
Sbjct: 79 FLGEEVNPEQMQQELREAFR 98
>pdb|2LC5|A Chain A, Calmodulin-Like Protein From Entamoeba Histolytica:
Solution Structure And Calcium-Binding Properties Of A
Partially Folded Protein
Length = 85
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 35/46 (76%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVD 105
E+KEAF+LFDKD D +T EELG VMR+LG ++++ +++++ D
Sbjct: 15 EYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYD 60
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 13 EFKEAFRLFDKDGDG 27
E+KEAF+LFDKD D
Sbjct: 15 EYKEAFQLFDKDNDN 29
>pdb|3DTP|E Chain E, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
pdb|3DTP|F Chain F, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 196
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 7/130 (5%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSI- 116
+ EFKEAF+L D+D DG I+K ++ SLG+ E+EL M+ E N+++
Sbjct: 56 VQEFKEAFQLIDQDKDGFISKNDIRATFDSLGRLCTEQELDSMVAEA----PGPINFTMF 111
Query: 117 MNHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKE 176
+ G + D + G L+ L GE S++E++ + E
Sbjct: 112 LTIFGDRIAGTDEEDVIVNAFNLFDEGD--GKCKEETLKRSLTTWGEKFSQDEVDQALSE 169
Query: 177 VDVDGDGRID 186
+DG+G ID
Sbjct: 170 APIDGNGLID 179
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 58/133 (43%), Gaps = 29/133 (21%)
Query: 4 SNSPVFS------IVEFKEAFRLFDKDGDGVQARH-FRQXXXXXXXXYTTTMLYS----- 51
S S VF+ + EFKEAF+L D+D DG +++ R T L S
Sbjct: 43 SGSNVFAMFTQHQVQEFKEAFQLIDQDKDGFISKNDIRATFDSLGRLCTEQELDSMVAEA 102
Query: 52 ----NSPVFLIV------------EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREE 95
N +FL + AF LFD +GDG +E L R + + G+ ++
Sbjct: 103 PGPINFTMFLTIFGDRIAGTDEEDVIVNAFNLFD-EGDGKCKEETLKRSLTTWGEKFSQD 161
Query: 96 ELQQMLEEVDING 108
E+ Q L E I+G
Sbjct: 162 EVDQALSEAPIDG 174
>pdb|2KGB|C Chain C, Nmr Solution Of The Regulatory Domain Cardiac
F77w-Troponin C In Complex With The Cardiac Troponin I
144-163 Switch Peptide
Length = 89
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 60 EFKEAFRLFDKDG-DGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
EFK AF +F DG I+ +ELG+VMR LGQ EELQ+M++EVD +G
Sbjct: 19 EFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDG 68
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFN 188
G IS +L V++ LG++ + EE+++MI EVD DG G +DF+
Sbjct: 34 GCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFD 75
>pdb|2JXL|A Chain A, Solution Structure Of Cardiac N-Domain Troponin C Mutant
F77w-V82a
Length = 89
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 5/66 (7%)
Query: 60 EFKEAFRLFDKDG-DGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYS--- 115
EFK AF +F DG I+ +ELG+VMR LGQ EELQ+M++EVD +G ++
Sbjct: 19 EFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEWL 78
Query: 116 -IMNHC 120
+M C
Sbjct: 79 VMMARC 84
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFN 188
G IS +L V++ LG++ + EE+++MI EVD DG G +DF+
Sbjct: 34 GCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFD 75
>pdb|1MXL|C Chain C, Structure Of Cardiac Troponin C-troponin I Complex
pdb|1LXF|C Chain C, Structure Of The Regulatory N-Domain Of Human Cardiac
Troponin C In Complex With Human Cardiac Troponin-I(147-
163) And Bepridil
pdb|1AP4|A Chain A, Regulatory Domain Of Human Cardiac Troponin C In The
Calcium-Saturated State, Nmr, 40 Structures
pdb|1SPY|A Chain A, Regulatory Domain Of Human Cardiac Troponin C In The
Calcium-Free State, Nmr, 40 Structures
pdb|2KRD|C Chain C, Solution Structure Of The Regulatory Domain Of Human
Cardiac C In Complex With The Switch Region Of Cardiac
Troponin I A
pdb|2L1R|A Chain A, The Structure Of The Calcium-Sensitizer, Dfbp-O, In
Complex With The N-Domain Of Troponin C And The Switch
Region Of Troponin I
pdb|3SD6|A Chain A, Crystal Structure Of The Amino-terminal Domain Of Human
Cardiac Troponin C In Complex With Cadmium At 1.4
Resolution.
pdb|3SWB|A Chain A, Crystal Structure Of The Amino-terminal Domain Of Human
Cardiac Troponin C In Complex With Cadmium At 1.7 A
Resolution
pdb|4GJE|A Chain A, Crystal Structure Of The Refolded Amino-terminal Domain Of
Human Cardiac Troponin C In Complex With Cadmium
Length = 89
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 60 EFKEAFRLFDKDG-DGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
EFK AF +F DG I+ +ELG+VMR LGQ EELQ+M++EVD +G
Sbjct: 19 EFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDG 68
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFN 188
G IS +L V++ LG++ + EE+++MI EVD DG G +DF+
Sbjct: 34 GCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFD 75
>pdb|2GGM|A Chain A, Human Centrin 2 Xeroderma Pigmentosum Group C Protein
Complex
pdb|2GGM|B Chain B, Human Centrin 2 Xeroderma Pigmentosum Group C Protein
Complex
Length = 172
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 64/126 (50%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIMNH 119
E +EAF LFD DG G+I +EL R+LG ++EE+++ + E+D G N+
Sbjct: 32 EIREAFDLFDADGTGTIDVKELKVAXRALGFEPKKEEIKKXISEIDKEGTGKXNFGDFLT 91
Query: 120 CGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDV 179
+ + G IS +L+ V + LGE+L++EE+++ I E D
Sbjct: 92 VXTQKXSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEXIDEADR 151
Query: 180 DGDGRI 185
DGDG +
Sbjct: 152 DGDGEV 157
>pdb|2AMI|A Chain A, Solution Structure Of The Calcium-Loaded N-Terminal Sensor
Domain Of Centrin
Length = 96
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 35/49 (71%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
E +EAF LFD DG G+I +EL MR+LG ++EE+++M+ E+D +G
Sbjct: 31 EIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDG 79
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF 187
G I A +L+ ++ LG + +EEI+ MI E+D DG G IDF
Sbjct: 45 GTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDF 85
>pdb|1OQP|A Chain A, Structure Of The Ca2+C-Terminal Domain Of Caltractin In
Complex With The Cdc31p-Binding Domain From Kar1p
Length = 77
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 33/48 (68%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDIN 107
E +AFRLFD D G+IT ++L RV + LG+ EEELQ+M+ E D N
Sbjct: 10 EILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRN 57
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 28/40 (70%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRID 186
G I+ DLR V + LGE+L+EEE+++MI E D + D ID
Sbjct: 24 GTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEID 63
>pdb|1ZMZ|A Chain A, Solution Structure Of The N-Terminal Domain (M1-S98) Of
Human Centrin 2
Length = 98
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNY 114
E +EAF LFD DG G+I +EL MR+LG ++EE+++M+ E+D G N+
Sbjct: 32 EIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNF 86
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF 187
G I +L+ ++ LG + +EEI+ MI E+D +G G+++F
Sbjct: 46 GTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNF 86
>pdb|3TZ1|A Chain A, Crystal Structure Of The Ca2+-saturated C-terminal Domain
Of Akazara Scallop Troponin C In Complex With A Troponin
I Fragment
Length = 74
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 31/45 (68%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF 187
K +G I LR +L+ LG++L+E+EIE+MI E D DG G +D+
Sbjct: 18 KEKKGVIKVDVLRWILKSLGDELTEDEIENMIAETDTDGSGTVDY 62
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNY 114
E KEAFR+ DK+ G I + L +++SLG E+E++ M+ E D +G +Y
Sbjct: 8 ELKEAFRVLDKEKKGVIKVDVLRWILKSLGDELTEDEIENMIAETDTDGSGTVDY 62
>pdb|2AAO|A Chain A, Regulatory Apparatus Of Calcium Dependent Protein Kinase
From Arabidopsis Thaliana
pdb|2AAO|B Chain B, Regulatory Apparatus Of Calcium Dependent Protein Kinase
From Arabidopsis Thaliana
Length = 166
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 3/131 (2%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I KE F D D G IT EEL ++ +G +E E+ + + D++ +Y
Sbjct: 26 IAGLKEXFNXIDADKSGQITFEELKAGLKRVGANLKESEILDLXQAADVDNSGTIDYKEF 85
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
+N ++ K+ GYI+ +L+ + G + + IE++ ++V
Sbjct: 86 IAATLHLNKIE-REDHLFAAFTYFDKDGSGYITPDELQQACEEFG--VEDVRIEELXRDV 142
Query: 178 DVDGDGRIDFN 188
D D DGRID+N
Sbjct: 143 DQDNDGRIDYN 153
>pdb|2MYS|C Chain C, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
Length = 149
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 73/150 (48%), Gaps = 13/150 (8%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQML---EEVDINGKKAGNYSI 116
+FKEAF LFD+ GD IT ++G + R+LGQ E+ ++L + ++N
Sbjct: 9 DFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNAAAITFEEF 68
Query: 117 MNHCGAVVNALDXXXXXXXXXXXXXH-KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIK 175
+ A N D K G + ++LR VL LGE ++EEE+E+++K
Sbjct: 69 LPMLQAAANNKDQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEELMK 128
Query: 176 EVDVDGDGRIDFNGDGYFSFEEFVEIVYNM 205
G+ D N G ++E FV+ + ++
Sbjct: 129 -------GQEDSN--GCINYEAFVKHIMSV 149
>pdb|1M8Q|C Chain C, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|F Chain F, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|I Chain I, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|R Chain R, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|C Chain C, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|F Chain F, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|I Chain I, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|L Chain L, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|O Chain O, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|R Chain R, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|F Chain F, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|I Chain I, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|L Chain L, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|O Chain O, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|R Chain R, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|C Chain C, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|F Chain F, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|I Chain I, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|L Chain L, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|O Chain O, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|U Chain U, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|C Chain C, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|F Chain F, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|I Chain I, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|L Chain L, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|O Chain O, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|R Chain R, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|C Chain C, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|F Chain F, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|I Chain I, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|L Chain L, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|C Chain C, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|F Chain F, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|I Chain I, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|L Chain L, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|R Chain R, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|C Chain C, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|F Chain F, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|I Chain I, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|L Chain L, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|O Chain O, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|R Chain R, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|C Chain C, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|F Chain F, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|I Chain I, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|L Chain L, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|O Chain O, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|R Chain R, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|C Chain C, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|F Chain F, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|I Chain I, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|L Chain L, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|C Chain C, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|F Chain F, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|I Chain I, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|L Chain L, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|O Chain O, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|R Chain R, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 147
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 73/150 (48%), Gaps = 13/150 (8%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQML---EEVDINGKKAGNYSI 116
+FKEAF LFD+ GD IT ++G + R+LGQ E+ ++L + ++N
Sbjct: 7 DFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNAAAITFEEF 66
Query: 117 MNHCGAVVNALDXXXXXXXXXXXXXH-KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIK 175
+ A N D K G + ++LR VL LGE ++EEE+E+++K
Sbjct: 67 LPMLQAAANNKDQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEELMK 126
Query: 176 EVDVDGDGRIDFNGDGYFSFEEFVEIVYNM 205
G+ D N G ++E FV+ + ++
Sbjct: 127 -------GQEDSN--GCINYEAFVKHIMSV 147
>pdb|2K7B|A Chain A, Nmr Structure Of Mg2+-Bound Cabp1 N-Domain
Length = 76
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDIN 107
I E +EAFR FDKD DG I +LG MR++G E EL ++ +++++N
Sbjct: 9 IEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMN 58
>pdb|3CTN|A Chain A, Structure Of Calcium-Saturated Cardiac Troponin C, Nmr, 30
Structures
Length = 76
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 34/46 (73%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFN 188
KN GYI +L+ +LQ GE ++E++IE+++K+ D + DGRID++
Sbjct: 21 KNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYD 66
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 33/48 (68%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDIN 107
E + FR+FDK+ DG I EEL ++++ G+ E+++++++++ D N
Sbjct: 11 ELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKN 58
>pdb|1OZS|A Chain A, C-Domain Of Human Cardiac Troponin C In Complex With The
Inhibitory Region Of Human Cardiac Troponin I
Length = 73
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 2/58 (3%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVE 200
KN GYI +L+ +LQ GE ++E++IE+++K+ D + DGRID+ D + F + VE
Sbjct: 18 KNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDY--DEFLEFMKGVE 73
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 33/48 (68%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDIN 107
E + FR+FDK+ DG I EEL ++++ G+ E+++++++++ D N
Sbjct: 8 ELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKN 55
>pdb|1FI5|A Chain A, Nmr Structure Of The C Terminal Domain Of Cardiac Troponin
C Bound To The N Terminal Domain Of Cardiac Troponin I.
pdb|1SBJ|A Chain A, Nmr Structure Of The Mg2+-Loaded C Terminal Domain Of
Cardiac Troponin C Bound To The N Terminal Domain Of
Cardiac Troponin I
pdb|1SCV|A Chain A, Nmr Structure Of The C Terminal Domain Of Cardiac Troponin
C Bound To The N Terminal Domain Of Cardiac Troponin I
Length = 81
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 2/58 (3%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVE 200
KN GYI +L+ +LQ GE ++E++IE+++K+ D + DGRID+ D + F + VE
Sbjct: 26 KNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDY--DEFLEFMKGVE 81
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 33/48 (68%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDIN 107
E + FR+FDK+ DG I EEL ++++ G+ E+++++++++ D N
Sbjct: 16 ELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKN 63
>pdb|1IH0|A Chain A, Structure Of The C-Domain Of Human Cardiac Troponin C In
Complex With Ca2+ Sensitizer Emd 57033
Length = 71
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 34/46 (73%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFN 188
KN GYI +L+ +LQ GE ++E++IE+++K+ D + DGRID++
Sbjct: 16 KNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYD 61
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 33/48 (68%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDIN 107
E + FR+FDK+ DG I EEL ++++ G+ E+++++++++ D N
Sbjct: 6 ELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKN 53
>pdb|2KDH|A Chain A, The Solution Structure Of Human Cardiac Troponin C In
Complex With The Green Tea Polyphenol; (-)-
Epigallocatechin-3-Gallate
pdb|2L98|A Chain A, Structure Of Trans-Resveratrol In Complex With The Cardiac
Regulatory Protein Troponin C
Length = 72
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 34/46 (73%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFN 188
KN GYI +L+ +LQ GE ++E++IE+++K+ D + DGRID++
Sbjct: 17 KNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYD 62
Score = 34.3 bits (77), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 33/48 (68%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDIN 107
E + FR+FDK+ DG I +EL ++++ G+ E+++++++++ D N
Sbjct: 7 ELSDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKN 54
>pdb|3I5G|B Chain B, Crystal Structure Of Rigor-Like Squid Myosin S1
pdb|3I5H|B Chain B, The Crystal Structure Of Rigor Like Squid Myosin S1 In The
Absence Of Nucleotide
pdb|3I5I|B Chain B, The Crystal Structure Of Squid Myosin S1 In The Presence
Of So4 2-
pdb|3I5F|B Chain B, Crystal Structure Of Squid Mg.Adp Myosin S1
Length = 153
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
+ E KEAF + D+D DG I E+L + SLG+ ++EL ML+E + + +
Sbjct: 15 MQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKEC---PGQLNFTAFL 71
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
G V+ D ++ +G+I L+ +L+ +G++ S+EEI+++ K+
Sbjct: 72 TLFGEKVSGTD-PEDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWKDA 130
Query: 178 DV 179
+
Sbjct: 131 PL 132
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 61 FKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
+ AF +FD+DG G I ++ L ++ ++G +EE++ + ++ + K+ NY+ M
Sbjct: 87 LRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWKDAPLKNKQF-NYNKM 142
>pdb|3RV5|A Chain A, Crystal Structure Of Human Cardiac Troponin C Regulatory
Domain In Complex With Cadmium And Deoxycholic Acid
pdb|3RV5|B Chain B, Crystal Structure Of Human Cardiac Troponin C Regulatory
Domain In Complex With Cadmium And Deoxycholic Acid
pdb|3RV5|C Chain C, Crystal Structure Of Human Cardiac Troponin C Regulatory
Domain In Complex With Cadmium And Deoxycholic Acid
pdb|3RV5|D Chain D, Crystal Structure Of Human Cardiac Troponin C Regulatory
Domain In Complex With Cadmium And Deoxycholic Acid
Length = 89
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 60 EFKEAFRLFDKDG-DGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
EFK AF +F DG I+ +ELG+V R LGQ EELQ+ ++EVD +G
Sbjct: 19 EFKAAFDIFVLGAEDGCISTKELGKVXRXLGQNPTPEELQEXIDEVDEDG 68
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFN 188
G IS +L V + LG++ + EE+++ I EVD DG G +DF+
Sbjct: 34 GCISTKELGKVXRXLGQNPTPEELQEXIDEVDEDGSGTVDFD 75
>pdb|2OS8|C Chain C, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|C Chain C, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 157
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 69/147 (46%), Gaps = 8/147 (5%)
Query: 58 IVEFKEAFRLFD-KDG-DGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYS 115
I + KE F LFD DG DG++ ++G V R LG R E++ + + K
Sbjct: 9 IDDLKEVFELFDFWDGRDGAVDAFKIGDVCRCLGINPRNEDVFAVGGTHKMGEKSLPFEE 68
Query: 116 IMNHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIK 175
+ +++ + +G+IS ++LR VL LGE LS+EE++++I
Sbjct: 69 FLPAYEGLMDCEQGTYADYMEAFKTFDREGQGFISGAELRHVLSGLGERLSDEEVDEIIN 128
Query: 176 EVDVDGDGRIDFNGDGYFSFEEFVEIV 202
D+ D +G +EEFV+ V
Sbjct: 129 LTDLQED------LEGNVKYEEFVKKV 149
>pdb|3PN7|C Chain C, Visualizing New Hinges And A Potential Major Source Of
Compliance In The Lever Arm Of Myosin
pdb|3PN7|F Chain F, Visualizing New Hinges And A Potential Major Source Of
Compliance In The Lever Arm Of Myosin
pdb|3TS5|C Chain C, Crystal Structure Of A Light Chain Domain Of Scallop
Smooth Muscle Myosin
pdb|3TS5|F Chain F, Crystal Structure Of A Light Chain Domain Of Scallop
Smooth Muscle Myosin
pdb|3TUY|C Chain C, Phosphorylated Light Chain Domain Of Scallop Smooth Muscle
Myosin
pdb|3TUY|F Chain F, Phosphorylated Light Chain Domain Of Scallop Smooth Muscle
Myosin
Length = 156
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 69/147 (46%), Gaps = 8/147 (5%)
Query: 58 IVEFKEAFRLFD-KDG-DGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYS 115
I + KE F LFD DG DG++ ++G V R LG R E++ + + K
Sbjct: 8 IDDLKEVFELFDFWDGRDGAVDAFKIGDVCRCLGINPRNEDVFAVGGTHKMGEKSLPFEE 67
Query: 116 IMNHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIK 175
+ +++ + +G+IS ++LR VL LGE LS+EE++++I
Sbjct: 68 FLPAYEGLMDCEQGTYADYMEAFKTFDREGQGFISGAELRHVLSGLGERLSDEEVDEIIN 127
Query: 176 EVDVDGDGRIDFNGDGYFSFEEFVEIV 202
D+ D +G +EEFV+ V
Sbjct: 128 LTDLQED------LEGNVKYEEFVKKV 148
>pdb|1JC2|A Chain A, Complex Of The C-Domain Of Troponin C With Residues 1-40
Of Troponin I
Length = 76
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 32/46 (69%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFN 188
KN G+I +L +L+ GE + EE+IED++K+ D + DGRIDF+
Sbjct: 21 KNADGFIDIEELGEILRATGEHVIEEDIEDLMKDSDKNNDGRIDFD 66
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDIN 107
E FR+FDK+ DG I EELG ++R+ G+ EE+++ ++++ D N
Sbjct: 11 ELANCFRIFDKNADGFIDIEELGEILRATGEHVIEEDIEDLMKDSDKN 58
>pdb|1KK8|C Chain C, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 154
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 8/147 (5%)
Query: 58 IVEFKEAFRLFD-KDG-DGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYS 115
I + K+ F LFD DG DG++ +LG V R LG R E++ + + K
Sbjct: 8 IDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDVFAVGGTHKMGEKSLPFEE 67
Query: 116 IMNHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIK 175
+ +++ + +G+IS ++LR VL LGE LS+E+++++IK
Sbjct: 68 FLPAYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIK 127
Query: 176 EVDVDGDGRIDFNGDGYFSFEEFVEIV 202
D+ D +G +E+FV+ V
Sbjct: 128 LTDLQED------LEGNVKYEDFVKKV 148
>pdb|1WDC|C Chain C, Scallop Myosin Regulatory Domain
pdb|1B7T|Z Chain Z, Myosin Digested By Papain
pdb|1KK7|Z Chain Z, Scallop Myosin In The Near Rigor Conformation
pdb|1L2O|C Chain C, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|C Chain C, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|C Chain C, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
pdb|1QVI|Z Chain Z, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|Z Chain Z, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|C Chain C, Structure Of Nucleotide-free Scallop Myosin S1
pdb|3JVT|C Chain C, Calcium-Bound Scallop Myosin Regulatory Domain (Lever Arm)
With Reconstituted Complete Light Chains
Length = 156
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 8/147 (5%)
Query: 58 IVEFKEAFRLFD-KDG-DGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYS 115
I + K+ F LFD DG DG++ +LG V R LG R E++ + + K
Sbjct: 8 IDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDVFAVGGTHKMGEKSLPFEE 67
Query: 116 IMNHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIK 175
+ +++ + +G+IS ++LR VL LGE LS+E+++++IK
Sbjct: 68 FLPAYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIK 127
Query: 176 EVDVDGDGRIDFNGDGYFSFEEFVEIV 202
D+ D +G +E+FV+ V
Sbjct: 128 LTDLQED------LEGNVKYEDFVKKV 148
>pdb|1DFK|Z Chain Z, Nucleotide-Free Scallop Myosin S1-Near Rigor State
pdb|1DFL|Z Chain Z, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|X Chain X, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
Length = 152
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 8/147 (5%)
Query: 58 IVEFKEAFRLFD-KDG-DGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYS 115
I + K+ F LFD DG DG++ +LG V R LG R E++ + + K
Sbjct: 6 IDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDVFAVGGTHKMGEKSLPFEE 65
Query: 116 IMNHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIK 175
+ +++ + +G+IS ++LR VL LGE LS+E+++++IK
Sbjct: 66 FLPAYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIK 125
Query: 176 EVDVDGDGRIDFNGDGYFSFEEFVEIV 202
D+ D +G +E+FV+ V
Sbjct: 126 LTDLQED------LEGNVKYEDFVKKV 146
>pdb|2W4T|Z Chain Z, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|Z Chain Z, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|Z Chain Z, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 151
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 8/147 (5%)
Query: 58 IVEFKEAFRLFD-KDG-DGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYS 115
I + K+ F LFD DG DG++ +LG V R LG R E++ + + K
Sbjct: 5 IDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDVFAVGGTHKMGEKSLPFEE 64
Query: 116 IMNHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIK 175
+ +++ + +G+IS ++LR VL LGE LS+E+++++IK
Sbjct: 65 FLPAYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIK 124
Query: 176 EVDVDGDGRIDFNGDGYFSFEEFVEIV 202
D+ D +G +E+FV+ V
Sbjct: 125 LTDLQED------LEGNVKYEDFVKKV 145
>pdb|2EC6|C Chain C, Placopecten Striated Muscle Myosin Ii
Length = 156
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 69/147 (46%), Gaps = 8/147 (5%)
Query: 58 IVEFKEAFRLFD-KDG-DGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYS 115
I + K+ F LFD DG DG++ +LG V R LG R E++ + + K
Sbjct: 8 IDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDVFAVGGTHKMGEKSLPFEE 67
Query: 116 IMNHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIK 175
+ +++ + +G+IS ++LR VL LGE LS+EE++++I
Sbjct: 68 FLPAYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLSGLGERLSDEEVDEIIN 127
Query: 176 EVDVDGDGRIDFNGDGYFSFEEFVEIV 202
D+ D +G +EEFV+ V
Sbjct: 128 LTDLQED------LEGNVKYEEFVKKV 148
>pdb|1SCM|C Chain C, Structure Of The Regulatory Domain Of Scallop Myosin At
2.8 Angstroms Resolution
Length = 149
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 8/147 (5%)
Query: 58 IVEFKEAFRLFD-KDG-DGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYS 115
I + K+ F LFD DG DG++ +LG V R LG R E++ + + K
Sbjct: 5 IDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDVFAVGGTHKMGEKSLPFEE 64
Query: 116 IMNHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIK 175
+ +++ + +G+IS ++LR VL LGE LS+E+++++IK
Sbjct: 65 FLPAYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIK 124
Query: 176 EVDVDGDGRIDFNGDGYFSFEEFVEIV 202
D+ D +G +E+FV+ V
Sbjct: 125 LTDLQED------LEGNVKYEDFVKKV 145
>pdb|2K7C|A Chain A, Nmr Structure Of Mg2+-Bound Cabp1 C-Domain
pdb|2K7D|A Chain A, Nmr Structure Of Ca2+-Bound Cabp1 C-Domain
Length = 72
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 9/60 (15%)
Query: 144 NYRGYISASDLR-AVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
N G IS S+LR A+ + LG + +IE++I++VD++GDGR+D FEEFV ++
Sbjct: 19 NGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNGDGRVD--------FEEFVRMM 70
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRS-LGQFAREEELQQMLEEVDING 108
+ E ++AFR FD +GDG I+ EL MR LG ++++++ +VD+NG
Sbjct: 6 VKELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNG 57
>pdb|1M39|A Chain A, Solution Structure Of The C-Terminal Fragment (F86-I165)
Of The Human Centrin 2 In Calcium Saturated Form
Length = 89
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 44 YTTTMLYSNSPVFLIVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEE 103
+ T M S E +AF+LFD D G I+ + L RV + LG+ +EELQ+M++E
Sbjct: 6 FLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDE 65
Query: 104 VDING 108
D +G
Sbjct: 66 ADRDG 70
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 29/39 (74%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRI 185
G IS +L+ V + LGE+L++EE+++MI E D DGDG +
Sbjct: 36 GKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEV 74
>pdb|2A4J|A Chain A, Solution Structure Of The C-Terminal Domain (T94-Y172) Of
The Human Centrin 2 In Complex With A 17 Residues
Peptide (P1-Xpc) From Xeroderma Pigmentosum Group C
Protein
pdb|2K2I|A Chain A, Nmr Solution Structure Of The C-Terminal Domain (T94-Y172)
Of The Human Centrin 2 In Complex With A Repeat Sequence
Of Human Sfi1 (R641-T660)
Length = 79
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
E +AF+LFD D G I+ + L RV + LG+ +EELQ+M++E D +G
Sbjct: 12 EILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDG 60
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 29/39 (74%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRI 185
G IS +L+ V + LGE+L++EE+++MI E D DGDG +
Sbjct: 26 GKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEV 64
>pdb|2K2A|A Chain A, Solution Structure Of The Apo C Terminal Domain Of
Lethoceru C Isoform F1
Length = 70
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF 187
K GYIS +R +L L E LS E+++ MI E+D DG G +DF
Sbjct: 14 KEGNGYISTDVMREILAELDETLSSEDLDAMIDEIDADGSGTVDF 58
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 33/50 (66%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGK 109
E +EAFRL+DK+G+G I+ + + ++ L + E+L M++E+D +G
Sbjct: 4 ELREAFRLYDKEGNGYISTDVMREILAELDETLSSEDLDAMIDEIDADGS 53
>pdb|2FCE|A Chain A, Solution Structure Of C-Lobe Myosin Light Chain From
Saccharomices Cerevisiae
Length = 70
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFN 188
K G +S DLR +L LGE L++ E+++++K V+VD +G ID+
Sbjct: 16 KESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYK 61
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLE--EVDING 108
+F +AF++FDK+ G ++ +L ++ LG+ + E+ ++L+ EVD NG
Sbjct: 6 DFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNG 56
>pdb|3JTD|C Chain C, Calcium-Free Scallop Myosin Regulatory Domain With
Elc-D19a Point Mutation
Length = 156
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 8/147 (5%)
Query: 58 IVEFKEAFRLFD-KDG-DGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYS 115
I + K+ F LF DG DG++ +LG V R LG R E++ + + K
Sbjct: 8 IDDLKDVFELFAFWDGRDGAVDAFKLGDVCRCLGINPRNEDVFAVGGTHKMGEKSLPFEE 67
Query: 116 IMNHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIK 175
+ +++ + +G+IS ++LR VL LGE LS+E+++++IK
Sbjct: 68 FLPAYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIK 127
Query: 176 EVDVDGDGRIDFNGDGYFSFEEFVEIV 202
D+ D +G +E+FV+ V
Sbjct: 128 LTDLQED------LEGNVKYEDFVKKV 148
>pdb|1K9U|A Chain A, Crystal Structure Of The Calcium-Binding Pollen Allergen
Phl P 7 (Polcalcin) At 1.75 Angstroem
pdb|1K9U|B Chain B, Crystal Structure Of The Calcium-Binding Pollen Allergen
Phl P 7 (Polcalcin) At 1.75 Angstroem
Length = 78
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 144 NYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFN 188
N G IS S+L L+ LG S +E++ M+ E+D DGDG IDFN
Sbjct: 15 NGDGKISLSELTDALRTLGS-TSADEVQRMMAEIDTDGDGFIDFN 58
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 65 FRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
F+ FD +GDG I+ EL +R+LG +E+Q+M+ E+D +G
Sbjct: 9 FKRFDTNGDGKISLSELTDALRTLGS-TSADEVQRMMAEIDTDG 51
>pdb|2LVI|A Chain A, Solution Structure Of Apo-phl P 7
pdb|2LVJ|A Chain A, Solution Structure Of Hemi-mg-bound Phl P 7
pdb|2LVK|A Chain A, Solution Structure Of Ca-bound Phl P 7
Length = 77
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 144 NYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFN 188
N G IS S+L L+ LG S +E++ M+ E+D DGDG IDFN
Sbjct: 14 NGDGKISLSELTDALRTLGS-TSADEVQRMMAEIDTDGDGFIDFN 57
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 65 FRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
F+ FD +GDG I+ EL +R+LG +E+Q+M+ E+D +G
Sbjct: 8 FKRFDTNGDGKISLSELTDALRTLGS-TSADEVQRMMAEIDTDG 50
>pdb|2OPO|A Chain A, Crystal Structure Of The Calcium-Binding Pollen Allergen
Che A 3
pdb|2OPO|B Chain B, Crystal Structure Of The Calcium-Binding Pollen Allergen
Che A 3
pdb|2OPO|C Chain C, Crystal Structure Of The Calcium-Binding Pollen Allergen
Che A 3
pdb|2OPO|D Chain D, Crystal Structure Of The Calcium-Binding Pollen Allergen
Che A 3
Length = 86
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
I + + F+ FD +GDG I+ ELG +++LG +E+++M+ E+D +G
Sbjct: 10 IADRERIFKRFDTNGDGKISSSELGDALKTLGSVT-PDEVRRMMAEIDTDG 59
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 9/57 (15%)
Query: 144 NYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVE 200
N G IS+S+L L+ LG ++ +E+ M+ E+D D GDG+ SF+EF +
Sbjct: 23 NGDGKISSSELGDALKTLGS-VTPDEVRRMMAEIDTD--------GDGFISFDEFTD 70
>pdb|1H4B|A Chain A, Solution Structure Of The Birch Pollen Allergen Bet V 4
Length = 84
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 65 FRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
F+ FD +GDG I+ ELG +++LG +E++ M+ E+D +G
Sbjct: 15 FKRFDANGDGKISAAELGEALKTLGSIT-PDEVKHMMAEIDTDG 57
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 9/57 (15%)
Query: 144 NYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVE 200
N G ISA++L L+ LG ++ +E++ M+ E+D D GDG+ SF+EF +
Sbjct: 21 NGDGKISAAELGEALKTLGS-ITPDEVKHMMAEIDTD--------GDGFISFQEFTD 68
>pdb|2HF5|A Chain A, The Structure And Function Of A Novel Two-Site Calcium-
Binding Fragment Of Calmodulin
Length = 68
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 23/30 (76%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLG 89
E +EAFR+FDKDG+G I+ EL VM +LG
Sbjct: 39 EIREAFRVFDKDGNGYISAAELRHVMTNLG 68
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 14/58 (24%)
Query: 169 EIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEEKTADQEEKELRDAFR 226
E++DMI EVD DG+G ID F EF+ ++ + K D EE E+R+AFR
Sbjct: 2 ELQDMINEVDADGNGTID--------FPEFLTMM-----ARKMKDTDSEE-EIREAFR 45
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQ 35
E +EAFR+FDKDG+G + A R
Sbjct: 39 EIREAFRVFDKDGNGYISAAELRH 62
>pdb|1TCO|B Chain B, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
pdb|1AUI|B Chain B, Human Calcineurin Heterodimer
pdb|1M63|B Chain B, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|F Chain F, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
Length = 169
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 64 AFRLFDKDGDGSITKEELGRVMRSL-GQFAREEELQQMLEEVDINGKKAGN--YSIMNHC 120
AFR++D D DG I+ EL +V++ + G ++ +LQQ++++ IN K G+ S C
Sbjct: 94 AFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFC 153
Query: 121 GAVVNALD 128
AVV LD
Sbjct: 154 -AVVGGLD 160
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 147 GYISASDLRAVLQCL-GEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
GYIS +L VL+ + G +L + +++ ++ + ++ D +GDG SFEEF +V
Sbjct: 104 GYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADK----DGDGRISFEEFCAVV 156
>pdb|3LL8|B Chain B, Crystal Structure Of Calcineurin In Complex With Akap79
Peptide
pdb|3LL8|D Chain D, Crystal Structure Of Calcineurin In Complex With Akap79
Peptide
Length = 155
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 64 AFRLFDKDGDGSITKEELGRVMRSL-GQFAREEELQQMLEEVDINGKKAGN--YSIMNHC 120
AFR++D D DG I+ EL +V++ + G ++ +LQQ++++ IN K G+ S C
Sbjct: 80 AFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFC 139
Query: 121 GAVVNALD 128
AVV LD
Sbjct: 140 -AVVGGLD 146
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 147 GYISASDLRAVLQCL-GEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
GYIS +L VL+ + G +L + +++ ++ + ++ D +GDG SFEEF +V
Sbjct: 90 GYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADK----DGDGRISFEEFCAVV 142
>pdb|2BL0|C Chain C, Physarum Polycephalum Myosin Ii Regulatory Domain
Length = 142
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 26/51 (50%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
+ EFKEAF LFD + G ITKE L V++ G +M E D G
Sbjct: 5 VSEFKEAFELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATG 55
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 14/80 (17%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMG 206
G+I+ L+ VL+ G + +M E D G+G+I +F E + MG
Sbjct: 21 GFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKI-----------QFPEFLSMMG 69
Query: 207 ATTEEKTADQEEKELRDAFR 226
++ T+ E LR AFR
Sbjct: 70 RRMKQTTS---EDILRQAFR 86
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 62 KEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQML 101
++AFR FD +G G I K L + +LG + E + L
Sbjct: 82 RQAFRTFDPEGTGYIPKAALQDALLNLGDRLKPHEFAEFL 121
>pdb|1MF8|B Chain B, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
Length = 170
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 64 AFRLFDKDGDGSITKEELGRVMRSL-GQFAREEELQQMLEEVDINGKKAGN--YSIMNHC 120
AFR++D D DG I+ EL +V++ + G ++ +LQQ++++ IN K G+ S C
Sbjct: 95 AFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFC 154
Query: 121 GAVVNALD 128
AVV LD
Sbjct: 155 -AVVGGLD 161
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 147 GYISASDLRAVLQCL-GEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
GYIS +L VL+ + G +L + +++ ++ + ++ D +GDG SFEEF +V
Sbjct: 105 GYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADK----DGDGRISFEEFCAVV 157
>pdb|2P6B|B Chain B, Crystal Structure Of Human Calcineurin In Complex With
Pvivit Peptide
pdb|2P6B|D Chain D, Crystal Structure Of Human Calcineurin In Complex With
Pvivit Peptide
Length = 156
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 64 AFRLFDKDGDGSITKEELGRVMRSL-GQFAREEELQQMLEEVDINGKKAGN--YSIMNHC 120
AFR++D D DG I+ EL +V++ + G ++ +LQQ++++ IN K G+ S C
Sbjct: 81 AFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFC 140
Query: 121 GAVVNALD 128
AVV LD
Sbjct: 141 -AVVGGLD 147
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 147 GYISASDLRAVLQCL-GEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
GYIS +L VL+ + G +L + +++ ++ + ++ D +GDG SFEEF +V
Sbjct: 91 GYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADK----DGDGRISFEEFCAVV 143
>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1,
Cgd3_920
pdb|3MWU|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Rm-1-95
pdb|3NCG|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Nm-Pp1
Length = 486
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 77/181 (42%), Gaps = 40/181 (22%)
Query: 48 MLYSNSPVFLIVEFK---EAFRLFDKDGDGSITKEELGRVMRSLGQFAR----------- 93
+LY S + + E K E FR D + DG + ++EL +R +F R
Sbjct: 317 LLYMASKLTTLDETKQLTEIFRKLDTNNDGMLDRDEL---VRGYHEFMRLKGVDSNSLIQ 373
Query: 94 ------EEELQQMLEEVDINGKKAGNYSIMNHCGAVVNALDXXXXXXXXXXXXXHKNY-- 145
E+++ ++ +D++G + YS + +A+D K +
Sbjct: 374 NEGSTIEDQIDSLMPLLDMDGSGSIEYSEF-----IASAIDRTILLSRERMERAFKMFDK 428
Query: 146 --RGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVY 203
G IS +L + + EE+E +I++VD + DG +DFN EFVE++
Sbjct: 429 DGSGKISTKELFKLFSQADSSIQMEELESIIEQVDNNKDGEVDFN--------EFVEMLQ 480
Query: 204 N 204
N
Sbjct: 481 N 481
>pdb|3PN7|B Chain B, Visualizing New Hinges And A Potential Major Source Of
Compliance In The Lever Arm Of Myosin
pdb|3PN7|E Chain E, Visualizing New Hinges And A Potential Major Source Of
Compliance In The Lever Arm Of Myosin
pdb|3TS5|B Chain B, Crystal Structure Of A Light Chain Domain Of Scallop
Smooth Muscle Myosin
pdb|3TS5|E Chain E, Crystal Structure Of A Light Chain Domain Of Scallop
Smooth Muscle Myosin
Length = 161
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 45 TTTMLYSNSPVFLIVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEV 104
T+ +++ P L+ E KEAF + D++ DG I +L + SLG+ ++EL ML+E
Sbjct: 9 ATSNVFARLPQKLMQEMKEAFTMIDQNRDGFIDINDLKEMFSSLGRTPDDKELTAMLKEA 68
>pdb|1M8Q|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|T Chain T, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 145
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 7/132 (5%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQF-AREEELQQMLEEVDINGKKAGNYSI 116
I +FKEAF + D++ DG I K++L ++G+ + EEL M++E N+++
Sbjct: 6 IEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIKEA----SGPINFTV 61
Query: 117 -MNHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIK 175
+ G + D + +G I S L +L G + EEI++M
Sbjct: 62 FLTMFGEKLKGAD-PEDVIMGAFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMWA 120
Query: 176 EVDVDGDGRIDF 187
D G +D+
Sbjct: 121 AFPPDVAGNVDY 132
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 64 AFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIMNHCGAV 123
AF++ D DG GSI K L ++ + G EE++ M + AGN N C +
Sbjct: 82 AFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMWAAFPPD--VAGNVDYKNICYVI 139
Query: 124 VNALD 128
+ D
Sbjct: 140 THGED 144
>pdb|2MYS|B Chain B, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
pdb|1I84|U Chain U, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|Z Chain Z, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 166
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 7/132 (5%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQF-AREEELQQMLEEVDINGKKAGNYSI 116
I +FKEAF + D++ DG I K++L ++G+ + EEL M++E N+++
Sbjct: 24 IEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIKEA----SGPINFTV 79
Query: 117 -MNHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIK 175
+ G + D + +G I S L +L G + EEI++M
Sbjct: 80 FLTMFGEKLKGAD-PEDVIMGAFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMWA 138
Query: 176 EVDVDGDGRIDF 187
D G +D+
Sbjct: 139 AFPPDVAGNVDY 150
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 64 AFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIMNHCGAV 123
AF++ D DG GSI K L ++ + G EE++ M + AGN N C +
Sbjct: 100 AFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMWAAFPPD--VAGNVDYKNICYVI 157
Query: 124 VNALD 128
+ D
Sbjct: 158 THGED 162
>pdb|3O4Y|A Chain A, Crystal Structure Of Cad Domain Of The Plasmodium Vivax
Cdpk, Pvx_11610
Length = 196
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 75/161 (46%), Gaps = 13/161 (8%)
Query: 47 TMLYSNSPVFLIVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDI 106
T++ S + + + K AF D++G G+ITK +L + + G +L+++D
Sbjct: 43 TIIAQQSNDYDVQKLKAAFLHLDEEGKGNITKLQLRKGLERSG-LMLPPNFDLLLDQIDS 101
Query: 107 NGKKAGNYSIMNHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGE--D 164
+G +GN A ++ + G I+ ++L VL + +
Sbjct: 102 DG--SGNIDYTEFLAAAIDRRQLSKKLIYCAFRVFDVDNDGEITTAELAHVLFNGNKRGN 159
Query: 165 LSEE---EIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
++E +++ MI+EVD +GDG+IDF + F E +++
Sbjct: 160 ITERDVNQVKKMIREVDKNGDGKIDF-----YEFSEMMKLT 195
>pdb|3TUY|B Chain B, Phosphorylated Light Chain Domain Of Scallop Smooth Muscle
Myosin
pdb|3TUY|E Chain E, Phosphorylated Light Chain Domain Of Scallop Smooth Muscle
Myosin
Length = 161
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 45 TTTMLYSNSPVFLIVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEV 104
T +++ P L+ E KEAF + D++ DG I +L + SLG+ ++EL ML+E
Sbjct: 9 ATXNVFARLPQKLMQEMKEAFTMIDQNRDGFIDINDLKEMFSSLGRTPDDKELTAMLKEA 68
>pdb|1WDC|B Chain B, Scallop Myosin Regulatory Domain
pdb|1B7T|Y Chain Y, Myosin Digested By Papain
pdb|1KK7|Y Chain Y, Scallop Myosin In The Near Rigor Conformation
pdb|1L2O|B Chain B, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|B Chain B, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|B Chain B, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
pdb|1QVI|Y Chain Y, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|Y Chain Y, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|B Chain B, Structure Of Nucleotide-free Scallop Myosin S1
pdb|3JTD|B Chain B, Calcium-Free Scallop Myosin Regulatory Domain With
Elc-D19a Point Mutation
pdb|3JVT|B Chain B, Calcium-Bound Scallop Myosin Regulatory Domain (Lever Arm)
With Reconstituted Complete Light Chains
Length = 156
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 54 PVFLIVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEV 104
P I E KEAF + D D DG ++KE++ + LG+ ++EL ML+E
Sbjct: 13 PQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKEA 63
>pdb|1KK8|B Chain B, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 139
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 54 PVFLIVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEV 104
P I E KEAF + D D DG ++KE++ + LG+ ++EL ML+E
Sbjct: 1 PQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKEA 51
>pdb|2JOJ|A Chain A, Nmr Solution Structure Of N-Terminal Domain Of Euplotes
Octocarinatus Centrin
Length = 77
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
E KEAF LFD + GSI EL MR+LG ++ E+ +++ E D G
Sbjct: 8 EIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREG 56
>pdb|1SCM|B Chain B, Structure Of The Regulatory Domain Of Scallop Myosin At
2.8 Angstroms Resolution
Length = 145
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 54 PVFLIVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEV 104
P I E KEAF + D D DG ++KE++ + LG+ ++EL ML+E
Sbjct: 2 PQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKEA 52
>pdb|1DFK|Y Chain Y, Nucleotide-Free Scallop Myosin S1-Near Rigor State
pdb|1DFL|Y Chain Y, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|W Chain W, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
Length = 139
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 54 PVFLIVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEV 104
P I E KEAF + D D DG ++KE++ + LG+ ++EL ML+E
Sbjct: 2 PQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKEA 52
>pdb|2JNX|A Chain A, Nmr Derived Solution Structure Of An Ef-Hand Calcium
Binding Protein From Entamoeba Histolytica
Length = 134
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 20/140 (14%)
Query: 65 FRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIMNHCGAVV 124
F+ D +GDGS++ EE+ + S E+ LQ + + +DI+G + + A V
Sbjct: 6 FKQLDANGDGSVSYEEVKAFVSSKRPIKNEQLLQLIFKAIDIDGNGEIDLAEFTKFAAAV 65
Query: 125 NALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGE-DLSEEEIEDMIK----EVDV 179
D + L ++ G+ L++EE+ K E V
Sbjct: 66 KEQDLSDEK---------------VGLKILYKLMDADGDGKLTKEEVTTFFKKFGYEKVV 110
Query: 180 DGDGRIDFNGDGYFSFEEFV 199
D + D NGDGY + EEF+
Sbjct: 111 DQIMKADANGDGYITLEEFL 130
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 59 VEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
V K ++L D DGDG +TKEE+ + +F E+ + Q++ + D NG
Sbjct: 75 VGLKILYKLMDADGDGKLTKEEVTTFFK---KFGYEKVVDQIM-KADANG 120
>pdb|2W4T|Y Chain Y, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|Y Chain Y, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|Y Chain Y, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 136
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEV 104
I E KEAF + D D DG ++KE++ + LG+ ++EL ML+E
Sbjct: 3 IQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKEA 49
>pdb|1PON|A Chain A, Site Iii-Site Iv Troponin C Heterodimer, Nmr
pdb|1CTA|A Chain A, Determination Of The Solution Structure Of A Synthetic
Two- Site Calcium-Binding Homodimeric Protein Domain By
Nmr Spectroscopy
pdb|1CTA|B Chain B, Determination Of The Solution Structure Of A Synthetic
Two- Site Calcium-Binding Homodimeric Protein Domain By
Nmr Spectroscopy
pdb|1CTD|A Chain A, Determination Of The Solution Structure Of A Synthetic
Two- Site Calcium-Binding Homodimeric Protein Domain By
Nmr Spectroscopy
pdb|1CTD|B Chain B, Determination Of The Solution Structure Of A Synthetic
Two- Site Calcium-Binding Homodimeric Protein Domain By
Nmr Spectroscopy
Length = 36
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLG 89
E AFR+FDK+ DG I EELG ++R+ G
Sbjct: 6 ELANAFRIFDKNADGYIDIEELGEILRATG 35
>pdb|2W4A|B Chain B, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|B Chain B, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|B Chain B, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 150
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 7/137 (5%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQF-AREEELQQMLEEVDINGKKAGNYSI 116
I +FKEAF + D++ DG I K++L ++G+ + EEL M++E N+++
Sbjct: 11 IQDFKEAFTVIDQNRDGIIDKDDLRETFAAMGRLNVKNEELDAMIKE----ASGPINFTV 66
Query: 117 -MNHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIK 175
+ G + D + +G I S L +L + + EEI++M
Sbjct: 67 FLTMFGEKLKGAD-PEDVIMGAFKVLDPDGKGSIKKSFLEELLTTQCDRFTPEEIKNMWA 125
Query: 176 EVDVDGDGRIDFNGDGY 192
D G +D+ Y
Sbjct: 126 AFPPDVAGNVDYKNICY 142
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 64 AFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIMNHCGAV 123
AF++ D DG GSI K L ++ + EE++ M + AGN N C +
Sbjct: 87 AFKVLDPDGKGSIKKSFLEELLTTQCDRFTPEEIKNMWAAFPPD--VAGNVDYKNICYVI 144
Query: 124 VNALD 128
+ D
Sbjct: 145 THGED 149
>pdb|3I5G|C Chain C, Crystal Structure Of Rigor-Like Squid Myosin S1
pdb|3I5H|C Chain C, The Crystal Structure Of Rigor Like Squid Myosin S1 In The
Absence Of Nucleotide
pdb|3I5I|C Chain C, The Crystal Structure Of Squid Myosin S1 In The Presence
Of So4 2-
pdb|3I5F|C Chain C, Crystal Structure Of Squid Mg.Adp Myosin S1
Length = 159
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGN 113
EF EAF+ FD++G G I+ E+ V++ LG+ E++ + DI GN
Sbjct: 86 EFMEAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFTFCDIREDIDGN 139
>pdb|3PM8|A Chain A, Cad Domain Of Pff0520w, Calcium Dependent Protein Kinase
pdb|3PM8|B Chain B, Cad Domain Of Pff0520w, Calcium Dependent Protein Kinase
Length = 197
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 62/140 (44%), Gaps = 17/140 (12%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I + F D D G+++ +E+ ++ +G ++ Q+L ++D N +Y+
Sbjct: 56 INNLRNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSNASGQIHYT-- 113
Query: 118 NHCGAVVNALDXXXXXXXXXXXXXHKNY----RGYISASDLRAVLQCLGED-----LSEE 168
+ +D K + G IS +L+ + G D L ++
Sbjct: 114 ---DFLAATIDKQTYLKKEVCLIPFKFFDIDGNGKISVEELKRIF---GRDDIENPLIDK 167
Query: 169 EIEDMIKEVDVDGDGRIDFN 188
I+ +++EVD++GDG IDF+
Sbjct: 168 AIDSLLQEVDLNGDGEIDFH 187
>pdb|2OS8|B Chain B, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|B Chain B, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 157
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 54 PVFLIVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEV 104
P I E KEAF + D++ DG I +L + SLG+ ++EL ML+E
Sbjct: 14 PQKQIQEMKEAFTMIDQNRDGFIDINDLKEMFSSLGRTPDDKELTAMLKEA 64
>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii,
Tgme49_101440, In Presence Of Calcium
Length = 508
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 25/161 (15%)
Query: 46 TTMLYSNSPVFLIVEFKEAFRLF---DKDGDGSITKEEL----GRVMRSLGQ-------F 91
+LY S + E KE +F DK+GDG + + EL +MR GQ
Sbjct: 343 AALLYMGSKLTSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDAS 402
Query: 92 AREEELQQMLEEVDINGKKAGNYSIMNHCGAVVNALDXXXXXXXXXXXXXHKNY----RG 147
A E E+ Q+L+ VD + YS V A+D + + G
Sbjct: 403 AVEHEVDQVLDAVDFDKNGYIEYSEF-----VTVAMDRKTLLSRERLERAFRMFDSDNSG 457
Query: 148 YISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFN 188
IS+++L + D+ E + ++ EVD + DG +DF+
Sbjct: 458 KISSTELATIFGV--SDVDSETWKSVLSEVDKNNDGEVDFD 496
>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From
Toxoplasma Gondii, Tgme49.101440
Length = 507
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 25/161 (15%)
Query: 46 TTMLYSNSPVFLIVEFKEAFRLF---DKDGDGSITKEEL----GRVMRSLGQ-------F 91
+LY S + E KE +F DK+GDG + + EL +MR GQ
Sbjct: 342 AALLYMGSKLTSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDAS 401
Query: 92 AREEELQQMLEEVDINGKKAGNYSIMNHCGAVVNALDXXXXXXXXXXXXXHKNY----RG 147
A E E+ Q+L+ VD + YS V A+D + + G
Sbjct: 402 AVEHEVDQVLDAVDFDKNGYIEYSEF-----VTVAMDRKTLLSRERLERAFRMFDSDNSG 456
Query: 148 YISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFN 188
IS+++L + D+ E + ++ EVD + DG +DF+
Sbjct: 457 KISSTELATIFGV--SDVDSETWKSVLSEVDKNNDGEVDFD 495
>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1)
pdb|3I7B|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Nm-Pp1
pdb|3N51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor
Rm-1-95
pdb|3SX9|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-132
pdb|3SXF|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-89
pdb|3T3U|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-130
pdb|3T3V|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-87
pdb|3UPX|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1300
pdb|3UPZ|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumpless Bki Analog Uw1243
pdb|3V51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Rm-1-176
pdb|3V5P|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1288
pdb|3V5T|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1299
Length = 484
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 60/144 (41%), Gaps = 22/144 (15%)
Query: 60 EFKEAFRLFDKDGDGSITKEEL----GRVMRSLGQ-------FAREEELQQMLEEVDING 108
E F DK+GDG + + EL +MR GQ A E E+ Q+L+ VD +
Sbjct: 336 ELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDK 395
Query: 109 KKAGNYSIMNHCGAVVNALDXXXXXXXXXXXXXHKNY----RGYISASDLRAVLQCLGED 164
YS V A+D + + G IS+++L + D
Sbjct: 396 NGYIEYSEF-----VTVAMDRKTLLSRERLERAFRMFDSDNSGKISSTELATIFGV--SD 448
Query: 165 LSEEEIEDMIKEVDVDGDGRIDFN 188
+ E + ++ EVD + DG +DF+
Sbjct: 449 VDSETWKSVLSEVDKNNDGEVDFD 472
>pdb|1Y1X|A Chain A, Structural Analysis Of A Homolog Of Programmed Cell Death
6 Protein From Leishmania Major Friedlin
pdb|1Y1X|B Chain B, Structural Analysis Of A Homolog Of Programmed Cell Death
6 Protein From Leishmania Major Friedlin
Length = 191
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 60/155 (38%), Gaps = 23/155 (14%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLG---QFAREEELQQMLEEVDINGKKAGNYSI 116
E E FR D DG G+I+ EL + S G A E+L M ++
Sbjct: 28 ELMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLHMYDK------------- 74
Query: 117 MNHCGAVV----NALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIED 172
NH G + L + G + ++++RA L G +SE+ +
Sbjct: 75 -NHSGEITFDEFKDLHHFILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQA 133
Query: 173 MIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMGA 207
++++ D G + F D Y FV V N+ A
Sbjct: 134 LMRKFDRQRRGSLGF--DDYVELSIFVCRVRNVFA 166
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 57 LIVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVD 105
I+ +E FR D GDG + E+ + S G E+ Q ++ + D
Sbjct: 91 FILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFD 139
>pdb|1JF0|A Chain A, The Crystal Structure Of Obelin From Obelia Geniculata At
1.82 A Resolution
Length = 195
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 52 NSPVFLIVEFKEA-FRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDIN 107
N P LI E+ +A F +FDKDG G+IT +E R G EE+ ++ + D++
Sbjct: 106 NEPT-LIREWGDAVFDIFDKDGSGTITLDEWKAYGRISGISPSEEDCEKTFQHCDLD 161
>pdb|1DGU|A Chain A, Homology-Based Model Of Calcium-Saturated Cib (Calcium-And
Integrin-Binding Protein)
pdb|1DGV|A Chain A, Homology-Based Model Of Apo Cib (Calcium-And Integrin-
Binding Protein)
pdb|1XO5|A Chain A, Crystal Structure Of Cib1, An Ef-Hand, Integrin And
Kinase- Binding Protein
pdb|1XO5|B Chain B, Crystal Structure Of Cib1, An Ef-Hand, Integrin And
Kinase- Binding Protein
pdb|1Y1A|A Chain A, Crystal Structure Of Calcium And Integrin Binding Protein
pdb|1Y1A|B Chain B, Crystal Structure Of Calcium And Integrin Binding Protein
Length = 183
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 9/65 (13%)
Query: 64 AFRLFDKDGDGSITKEELGRVMRSL---GQFAR--EEELQQM----LEEVDINGKKAGNY 114
AFR+FD D DG++ +E+L R++ L G+ R E++Q+ LEE DI+ N
Sbjct: 103 AFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINL 162
Query: 115 SIMNH 119
S H
Sbjct: 163 SEFQH 167
>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3,
Tgme49_105860
Length = 467
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 64 AFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDIN 107
AF+ FD DG G IT EELGR+ +E Q+L+E D N
Sbjct: 402 AFQQFDSDGSGKITNEELGRLFGVTE--VDDETWHQVLQECDKN 443
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 65/190 (34%), Gaps = 63/190 (33%)
Query: 46 TTMLYSNSPVFLIVEFKE---AFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLE 102
ML+ S + + E KE FR D +GDG + ++EL R L Q+
Sbjct: 298 AAMLFMGSKLTTLEETKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWK---------- 347
Query: 103 EVDINGKKAGNYSIMNHCGAVVNALDXXXXXXXXXXXXXHKNY--RGYISASDLRAVLQC 160
G V+ LD ++ GYI S+ V C
Sbjct: 348 ------------------GDTVSDLDSSQIEAEVDHILQSVDFDRNGYIEYSEFVTV--C 387
Query: 161 LGEDL--SEEEIEDMIKEVDVDGDGRI--------------------------DFNGDGY 192
+ + L S E + ++ D DG G+I D N DG
Sbjct: 388 MDKQLLLSRERLLAAFQQFDSDGSGKITNEELGRLFGVTEVDDETWHQVLQECDKNNDGE 447
Query: 193 FSFEEFVEIV 202
FEEFVE++
Sbjct: 448 VDFEEFVEMM 457
>pdb|2L4H|A Chain A, The Solution Structure Of Calcium Bound Cib1
pdb|2L4I|A Chain A, The Solution Structure Of Magnesium Bound Cib1
pdb|2LM5|A Chain A, Solution Structure Of Ca2+-Cib1 In Complex With The
Cytoplasmic Domain Of The Integrin Aiib Subunit
Length = 214
Score = 34.3 bits (77), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 9/65 (13%)
Query: 64 AFRLFDKDGDGSITKEELGRVMRSL---GQFAR--EEELQQM----LEEVDINGKKAGNY 114
AFR+FD D DG++ +E+L R++ L G+ R E++Q+ LEE DI+ N
Sbjct: 134 AFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINL 193
Query: 115 SIMNH 119
S H
Sbjct: 194 SEFQH 198
>pdb|1TIZ|A Chain A, Solution Structure Of A Calmodulin-Like Calcium-Binding
Domain From Arabidopsis Thaliana
Length = 67
Score = 34.3 bits (77), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 62 KEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIMNHC 120
K F FDK+ DG ++ +E V + + +E++ + EE+D++G N C
Sbjct: 4 KRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSC 62
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFS 194
KN G +S + R V ++E+I +E+DVDG+G + N D + S
Sbjct: 12 KNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGEL--NADEFTS 61
>pdb|1QX2|A Chain A, X-Ray Structure Of Calcium-Loaded Calbindomodulin (A
Calbindin D9k Re- Engineered To Undergo A Conformational
Opening) At 1.44 A Resolution
pdb|1QX2|B Chain B, X-Ray Structure Of Calcium-Loaded Calbindomodulin (A
Calbindin D9k Re- Engineered To Undergo A Conformational
Opening) At 1.44 A Resolution
Length = 76
Score = 34.3 bits (77), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 10/53 (18%)
Query: 149 ISASDLRAVLQCLGEDLSE--EEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFV 199
IS +L+ V+Q LG L + +++MI+EVD NGDG SFEEF+
Sbjct: 24 ISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDK--------NGDGEVSFEEFL 68
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 60 EFKEAFRLFD-KDGDGS-ITKEELGRVMRSLGQ--FAREEELQQMLEEVDING 108
E K AF +F K+GD + I+KEEL VM++LG L +M+EEVD NG
Sbjct: 6 EIKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNG 58
>pdb|3KHE|A Chain A, Crystal Structure Of The Calcium-Loaded Calmodulin-Like
Domain Of The Cdpk, 541.M00134 From Toxoplasma Gondii
pdb|3KHE|B Chain B, Crystal Structure Of The Calcium-Loaded Calmodulin-Like
Domain Of The Cdpk, 541.M00134 From Toxoplasma Gondii
Length = 191
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 64 AFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDIN 107
AF+ FD DG G IT EELGR+ +E Q+L+E D N
Sbjct: 128 AFQQFDSDGSGKITNEELGRLFGVTE--VDDETWHQVLQECDKN 169
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 66/193 (34%), Gaps = 63/193 (32%)
Query: 46 TTMLYSNSPVFLIVEFKEA---FRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLE 102
ML+ S + + E KE FR D +GDG + ++EL R L Q+
Sbjct: 24 AAMLFMGSKLTTLEETKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWK---------- 73
Query: 103 EVDINGKKAGNYSIMNHCGAVVNALDXXXXXXXXXXXXXHKNY--RGYISASDLRAVLQC 160
G V+ LD ++ GYI S+ V C
Sbjct: 74 ------------------GDTVSDLDSSQIEAEVDHILQSVDFDRNGYIEYSEFVTV--C 113
Query: 161 LGEDL--SEEEIEDMIKEVDVDGDGRI--------------------------DFNGDGY 192
+ + L S E + ++ D DG G+I D N DG
Sbjct: 114 MDKQLLLSRERLLAAFQQFDSDGSGKITNEELGRLFGVTEVDDETWHQVLQECDKNNDGE 173
Query: 193 FSFEEFVEIVYNM 205
FEEFVE++ +
Sbjct: 174 VDFEEFVEMMQKI 186
>pdb|1S6J|A Chain A, N-Terminal Region Of The Ca2+-Saturated Calcium Regulatory
Domain (Cld) From Soybean Calcium-Dependent Protein
Kinase- Alpha (Cdpk)
Length = 87
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 61 FKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIMNHC 120
KE F++ D D G+IT +EL ++ +G E E++ +++ DI+ K+G
Sbjct: 25 LKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADID--KSGTIDYGEFI 82
Query: 121 GAVVN 125
A V+
Sbjct: 83 AATVH 87
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF 187
G I+ +L+ L+ +G +L E EI+D++ D+D G ID+
Sbjct: 38 GTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDY 78
>pdb|2FCD|A Chain A, Solution Structure Of N-Lobe Myosin Light Chain From
Saccharomices Cerevisiae
Length = 78
Score = 33.5 bits (75), Expect = 0.17, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 62 KEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQML 101
K+ F LFDK G G+I K+ LG +R++G + +Q ++
Sbjct: 7 KDIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDII 46
>pdb|2JUL|A Chain A, Nmr Structure Of Dream
Length = 256
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 11/71 (15%)
Query: 18 FRLFDKDGDGVQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKDGDGSIT 77
F FD DG+G A HF T+ + K AF L+D + DG IT
Sbjct: 135 FNAFDADGNG--AIHFEDFVVGLSILLRGTVHE---------KLKWAFNLYDINKDGCIT 183
Query: 78 KEELGRVMRSL 88
KEE+ +M+S+
Sbjct: 184 KEEMLAIMKSI 194
>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2
pdb|3NYV|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Non-Specific Inhibitor
Whi-P180
Length = 484
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 65/161 (40%), Gaps = 25/161 (15%)
Query: 46 TTMLYSNSPVFLIVEFKEAFRLF---DKDGDGSITKEEL-----------GRVMRSLGQF 91
+LY S + E KE +F DK+GDG + + EL G+ L
Sbjct: 319 AALLYXGSKLTSQDETKELTAIFHKXDKNGDGQLDRAELIEGYKELXRXKGQDASXLDAS 378
Query: 92 AREEELQQMLEEVDINGKKAGNYSIMNHCGAVVNALDXXXXXXXXXXXXXHKNY----RG 147
A E E+ Q+L+ VD + YS V A D + + G
Sbjct: 379 AVEHEVDQVLDAVDFDKNGYIEYSEF-----VTVAXDRKTLLSRERLERAFRXFDSDNSG 433
Query: 148 YISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFN 188
IS+++L + D+ E + ++ EVD + DG +DF+
Sbjct: 434 KISSTELATIFGV--SDVDSETWKSVLSEVDKNNDGEVDFD 472
>pdb|2E6W|A Chain A, Solution Structure And Calcium Binding Properties Of Ef-
Hands 3 And 4 Of Calsenilin
Length = 100
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSL 88
+ K AF L+D + DG ITKEE+ +M+S+
Sbjct: 10 KLKWAFNLYDINKDGYITKEEMLAIMKSI 38
>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In
Complex With Ca2+ And Amppnp
Length = 494
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 69/181 (38%), Gaps = 63/181 (34%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREE----ELQQMLEEVDINGKKAGNYS 115
E + FR DK+GDG + ++EL + + + EE +L Q+ EVD
Sbjct: 347 ELTDIFRHIDKNGDGQLDRQEL---IDGYSKLSGEEVAVFDLPQIESEVD---------- 393
Query: 116 IMNHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIK 175
A++ A D + GYI S+ V LS++++E +
Sbjct: 394 ------AILGAADF--------------DRNGYIDYSEFVTVAMDRKSLLSKDKLESAFQ 433
Query: 176 EVDVDGDGR--------------------------IDFNGDGYFSFEEFVEIVYNMGATT 209
+ D DG+G+ ID N DG FEEF +++ + +
Sbjct: 434 KFDQDGNGKISVDELASVFGLDHLESKTWKEMISGIDSNNDGDVDFEEFCKMIQKLCSNN 493
Query: 210 E 210
E
Sbjct: 494 E 494
>pdb|3L19|A Chain A, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3,
Cgd5_820
pdb|3L19|B Chain B, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3,
Cgd5_820
Length = 214
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 70/183 (38%), Gaps = 63/183 (34%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREE----ELQQMLEEVDINGKKAGNYS 115
E + FR DK+GDG + ++EL + + + EE +L Q+ EVD
Sbjct: 64 ELTDIFRHIDKNGDGQLDRQEL---IDGYSKLSGEEVAVFDLPQIESEVD---------- 110
Query: 116 IMNHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIK 175
A++ A D + GYI S+ V LS++++E +
Sbjct: 111 ------AILGAADF--------------DRNGYIDYSEFVTVAMDRKSLLSKDKLESAFQ 150
Query: 176 EVDVDGDGR--------------------------IDFNGDGYFSFEEFVEIVYNMGATT 209
+ D DG+G+ ID N DG FEEF +++ + +
Sbjct: 151 KFDQDGNGKISVDELASVFGLDHLESKTWKEMISGIDSNNDGDVDFEEFCKMIQKLCSNN 210
Query: 210 EEK 212
E +
Sbjct: 211 EPQ 213
>pdb|2G9B|A Chain A, Nmr Solution Structure Of Ca2+-Loaded Calbindin D28k
pdb|2F33|A Chain A, Nmr Solution Structure Of Ca2+-Loaded Calbindin D28k
Length = 263
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
EF +AF L+D+DG+G I + EL +++ L + + +E+DIN +IM
Sbjct: 192 EFNKAFELYDQDGNGYIDENELDALLKDLCEKNK--------QELDINNISTYKKNIM 241
>pdb|3K21|A Chain A, Crystal Structure Of Carboxy-Terminus Of Pfc0420w
Length = 191
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 68/147 (46%), Gaps = 8/147 (5%)
Query: 47 TMLYSNSPVFLIVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDI 106
T++ S + + + K F + D+DG G ITKE+L + + G +L+++D
Sbjct: 40 TIIAQQSNDYDVEKLKSTFLVLDEDGKGYITKEQLKKGLEKDG-LKLPYNFDLLLDQIDS 98
Query: 107 NGKKAGNYSIMNHCGAVVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQCLGE--D 164
+G +G A ++ + G I+ ++L +L + +
Sbjct: 99 DG--SGKIDYTEFIAAALDRKQLSKKLIYCAFRVFDVDNDGEITTAELAHILYNGNKKGN 156
Query: 165 LSEEE---IEDMIKEVDVDGDGRIDFN 188
+++ + ++ MI++VD + DG+IDF+
Sbjct: 157 ITQRDVNRVKRMIRDVDKNNDGKIDFH 183
>pdb|2NXQ|A Chain A, Crystal Structure Of Calcium Binding Protein 1 From
Entamoeba Histolytica: A Novel Arrangement Of Ef Hand
Motifs
pdb|2NXQ|B Chain B, Crystal Structure Of Calcium Binding Protein 1 From
Entamoeba Histolytica: A Novel Arrangement Of Ef Hand
Motifs
pdb|3PX1|A Chain A, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Strontium
pdb|3PX1|B Chain B, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Strontium
pdb|3QJK|A Chain A, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Lead
pdb|3QJK|B Chain B, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Lead
pdb|3ULG|A Chain A, Crystal Structure Of Calcium-Binding Protein-1 From
Entamoeba Histolytica In Complex With Barium
pdb|3ULG|B Chain B, Crystal Structure Of Calcium-Binding Protein-1 From
Entamoeba Histolytica In Complex With Barium
Length = 134
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 26/65 (40%)
Query: 162 GEDLSEEEI--EDMIKEVDVDGDGRI------------------------DFNGDGYFSF 195
G+DLS+++I + + K +DVDGDG++ D NGDGY +
Sbjct: 67 GQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKHGIEKVAEQVMKADANGDGYITL 126
Query: 196 EEFVE 200
EEF+E
Sbjct: 127 EEFLE 131
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 59 VEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
+ K ++L D DGDG +TKEE+ + G E++ + + + D NG
Sbjct: 75 IGLKVLYKLMDVDGDGKLTKEEVTSFFKKHGI----EKVAEQVMKADANG 120
>pdb|1JFJ|A Chain A, Nmr Solution Structure Of An Ef-Hand Calcium Binding
Protein From Entamoeba Histolytica
pdb|1JFK|A Chain A, Minimum Energy Representative Structure Of A Calcium Bound
Ef-hand Protein From Entamoeba Histolytica
Length = 134
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 26/65 (40%)
Query: 162 GEDLSEEEI--EDMIKEVDVDGDGRI------------------------DFNGDGYFSF 195
G+DLS+++I + + K +DVDGDG++ D NGDGY +
Sbjct: 67 GQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKHGIEKVAEQVMKADANGDGYITL 126
Query: 196 EEFVE 200
EEF+E
Sbjct: 127 EEFLE 131
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 59 VEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
+ K ++L D DGDG +TKEE+ + G E++ + + + D NG
Sbjct: 75 IGLKVLYKLMDVDGDGKLTKEEVTSFFKKHGI----EKVAEQVMKADANG 120
>pdb|1MR8|A Chain A, Migration Inhibitory Factor-Related Protein 8 From Human
pdb|1MR8|B Chain B, Migration Inhibitory Factor-Related Protein 8 From Human
Length = 93
Score = 32.0 bits (71), Expect = 0.50, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 185 IDFNGDGYFSFEEFVEIVYNMGATTEEKTADQEEKE 220
+D N DG +F+EF+ +V MG +K+ ++ KE
Sbjct: 58 LDINTDGAVNFQEFLILVIKMGVAAHKKSHEESHKE 93
>pdb|2EC6|B Chain B, Placopecten Striated Muscle Myosin Ii
Length = 133
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEV 104
E KEAF + D++ DG I +L SLG+ ++EL ML+E
Sbjct: 3 EMKEAFTMIDQNRDGFIDINDLKEEFSSLGRTPDDKELTAMLKEA 47
>pdb|1LA3|A Chain A, Solution Structure Of Recoverin Mutant, E85q
Length = 201
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 11/97 (11%)
Query: 15 KEAFRLFDKDGDGVQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKDGDG 74
+ FR FD + DG F+Q L+ S + + AF L+D DG+G
Sbjct: 66 QHVFRSFDANSDGT--LDFKQY---------VIALHMTSAGKTNQKLEWAFSLYDVDGNG 114
Query: 75 SITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKA 111
+I+K E+ ++ ++ + E+ + + E+ + K+A
Sbjct: 115 TISKNEVLEIVTAIFKMISPEDTKHLPEDENTPEKRA 151
>pdb|1OMV|A Chain A, Non-Myristoylated Bovine Recoverin (E85q Mutant) With
Calcium Bound To Ef-Hand 3
Length = 201
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 11/97 (11%)
Query: 15 KEAFRLFDKDGDGVQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKDGDG 74
+ FR FD + DG F+Q L+ S + + AF L+D DG+G
Sbjct: 66 QHVFRSFDANSDGT--LDFKQY---------VIALHMTSAGKTNQKLEWAFSLYDVDGNG 114
Query: 75 SITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKA 111
+I+K E+ ++ ++ + E+ + + E+ + K+A
Sbjct: 115 TISKNEVLEIVTAIFKMISPEDTKHLPEDENTPEKRA 151
>pdb|1XK4|A Chain A, Crystal Structure Of Human Calprotectin(s100a8/s100a9)
pdb|1XK4|B Chain B, Crystal Structure Of Human Calprotectin(s100a8/s100a9)
pdb|1XK4|E Chain E, Crystal Structure Of Human Calprotectin(s100a8/s100a9)
pdb|1XK4|F Chain F, Crystal Structure Of Human Calprotectin(s100a8/s100a9)
pdb|1XK4|I Chain I, Crystal Structure Of Human Calprotectin(s100a8/s100a9)
pdb|1XK4|J Chain J, Crystal Structure Of Human Calprotectin(s100a8/s100a9)
pdb|4GGF|A Chain A, Crystal Structure Of Mn2+ Bound Calprotectin
pdb|4GGF|K Chain K, Crystal Structure Of Mn2+ Bound Calprotectin
pdb|4GGF|S Chain S, Crystal Structure Of Mn2+ Bound Calprotectin
pdb|4GGF|U Chain U, Crystal Structure Of Mn2+ Bound Calprotectin
Length = 93
Score = 31.6 bits (70), Expect = 0.59, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 185 IDFNGDGYFSFEEFVEIVYNMGATTEEKTADQEEKE 220
+D N DG +F+EF+ +V MG +K+ ++ KE
Sbjct: 58 LDINTDGAVNFQEFLILVIKMGVAAHKKSHEESHKE 93
>pdb|1C7V|A Chain A, Nmr Solution Structure Of The Calcium-Bound C-Terminal
Domain (W81-S161) Of Calcium Vector Protein From
Amphioxus
pdb|1C7W|A Chain A, Nmr Solution Structure Of The Calcium-Bound C-Terminal
Domain (W81-S161) Of Calcium Vector Protein From
Amphioxus
Length = 81
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 144 NYRGYISASDLRAVLQCLGED-LSEEEIEDMIKEVDVDGDGRID 186
N G I + + ++Q +GE+ L++ E+E+ +KE D DG+G ID
Sbjct: 20 NGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVID 63
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 64 AFRLFDKDGDGSITKEELGRVMRSLGQFA-REEELQQMLEEVDING 108
AF++FD +GDG I +E +M+ +G+ + E+++ ++E D +G
Sbjct: 13 AFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDG 58
>pdb|2HET|A Chain A, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|B Chain B, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|C Chain C, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|D Chain D, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
Length = 189
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 30/48 (62%)
Query: 64 AFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKA 111
AF L+D DG+G+I+K E+ ++ ++ + E+ + + E+ + K+A
Sbjct: 104 AFSLYDVDGNGTISKNEVLEIVTAIFKMISPEDTKHLPEDENTPEKRA 151
>pdb|3PAT|A Chain A, Comparison Between The Crystal And The Solution Structures
Of The Ef Hand Parvalbumin
pdb|2PAS|A Chain A, Comparison Between The Crystal And The Solution Structures
Of The Ef Hand Parvalbumin
pdb|1PVA|A Chain A, Comparison Between The Crystal And The Solution Structures
Of The Ef Hand Parvalbumin (alpha Component From Pike
Muscle)
pdb|1PVA|B Chain B, Comparison Between The Crystal And The Solution Structures
Of The Ef Hand Parvalbumin (alpha Component From Pike
Muscle)
Length = 110
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 144 NYRGYISASDLRAVLQCL---GEDLSEEEIEDMIKEVDVDGDGRI 185
+ G+I +L+ VL+ G DL++ E + +K D DGDG+I
Sbjct: 54 DASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKI 98
>pdb|1JSA|A Chain A, Myristoylated Recoverin With Two Calciums Bound, Nmr, 24
Structures
Length = 201
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 30/48 (62%)
Query: 64 AFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKA 111
AF L+D DG+G+I+K E+ ++ ++ + E+ + + E+ + K+A
Sbjct: 104 AFSLYDVDGNGTISKNEVLEIVTAIFKMISPEDTKHLPEDENTPEKRA 151
>pdb|2R2I|A Chain A, Myristoylated Guanylate Cyclase Activating Protein-1 With
Calcium Bound
Length = 198
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 8/49 (16%)
Query: 154 LRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
+RA+ +C E ++ EE +M+ + +ID NGDG S EEF+E V
Sbjct: 117 IRAINRC-NEAMTAEEFTNMVFD-------KIDINGDGELSLEEFMEGV 157
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAR-------EEELQQMLEEVDING 108
+ + F+L+D DG+G I + EL +++++ R EE + +++DING
Sbjct: 89 KLRWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAMTAEEFTNMVFDKIDING 144
>pdb|2I94|A Chain A, Nmr Structure Of Recoverin Bound To Rhodopsin Kinase
Length = 202
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 30/48 (62%)
Query: 64 AFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKA 111
AF L+D DG+G+I+K E+ ++ ++ + E+ + + E+ + K+A
Sbjct: 105 AFSLYDVDGNGTISKNEVLEIVTAIFKMISPEDTKHLPEDENTPEKRA 152
>pdb|1OMR|A Chain A, Non-Myristoylated Wild-Type Bovine Recoverin With Calcium
Bound To Ef- Hand 3
pdb|1REC|A Chain A, Three-Dimensional Structure Of Recoverin, A Calcium Sensor
In Vision
pdb|1IKU|A Chain A, Myristoylated Recoverin In The Calcium-Free State, Nmr, 22
Structures
Length = 201
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 30/48 (62%)
Query: 64 AFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKA 111
AF L+D DG+G+I+K E+ ++ ++ + E+ + + E+ + K+A
Sbjct: 104 AFSLYDVDGNGTISKNEVLEIVTAIFKMISPEDTKHLPEDENTPEKRA 151
>pdb|2HQ8|A Chain A, Crystal Structure Of Coelenterazine-binding Protein From
Renilla Muelleri In The Ca Loaded Apo Form
pdb|2HQ8|B Chain B, Crystal Structure Of Coelenterazine-binding Protein From
Renilla Muelleri In The Ca Loaded Apo Form
Length = 186
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
GY+S + +A LQ +G DL++++ + +DFN +G S +EF+ V
Sbjct: 117 GYVSLPEFKAFLQAVGPDLTDDKA--------ITCFNTLDFNKNGQISRDEFLVTV 164
>pdb|3KPX|A Chain A, Crystal Structure Analysis Of Photoprotein Clytin
Length = 198
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 49 LYSNSPVFLIVEFKEA-FRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDIN 107
L+S + LI + EA F +FDKDG GSI+ +E G +E+ ++ + D++
Sbjct: 105 LWSQNKKSLIRNWGEAVFDIFDKDGSGSISLDEWKTYGGISGICPSDEDAEKTFKHCDLD 164
>pdb|2HPS|A Chain A, Crystal Structure Of Coelenterazine-binding Protein From
Renilla Muelleri
Length = 186
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
GY+S + +A LQ +G DL++++ + +DFN +G S +EF+ V
Sbjct: 117 GYVSLPEFKAFLQAVGPDLTDDKA--------ITCFNTLDFNKNGQISRDEFLVTV 164
>pdb|1SL7|A Chain A, Crystal Structure Of Calcium-Loaded Apo-Obelin From Obelia
Longissima
Length = 195
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 52 NSPVFLIVEFKEA-FRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDIN 107
N P LI E+ +A F +FDKDG G+IT +E + G +E+ + D++
Sbjct: 106 NEPT-LIREWGDAVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFRHCDLD 161
>pdb|1QV0|A Chain A, Atomic Resolution Structure Of Obelin From Obelia
Longissima
pdb|1QV1|A Chain A, Atomic Resolution Structure Of Obelin From Obelia
Longissima
pdb|1SL9|A Chain A, Obelin From Obelia Longissima
Length = 195
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 52 NSPVFLIVEFKEA-FRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDIN 107
N P LI E+ +A F +FDKDG G+IT +E + G +E+ + D++
Sbjct: 106 NEPT-LIREWGDAVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFRHCDLD 161
>pdb|2F8P|A Chain A, Crystal Structure Of Obelin Following Ca2+ Triggered
Bioluminescence Suggests Neutral Coelenteramide As The
Primary Excited State
Length = 195
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 52 NSPVFLIVEFKEA-FRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDIN 107
N P LI E+ +A F +FDKDG G+IT +E + G +E+ + D++
Sbjct: 106 NEPT-LIREWGDAVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFRHCDLD 161
>pdb|1EL4|A Chain A, Structure Of The Calcium-Regulated Photoprotein Obelin
Determined By Sulfur Sas
Length = 195
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 52 NSPVFLIVEFKEA-FRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDIN 107
N P LI E+ +A F +FDKDG G+IT +E + G +E+ + D++
Sbjct: 106 NEPT-LIREWGDAVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFRHCDLD 161
>pdb|1JF2|A Chain A, Crystal Structure Of W92f Obelin Mutant From Obelia
Longissima At 1.72 Angstrom Resolution
pdb|1S36|A Chain A, Crystal Structure Of A Ca2+-Discharged Photoprotein:
Implications For The Mechanisms Of The Calcium Trigger
And The Bioluminescence
Length = 195
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 52 NSPVFLIVEFKEA-FRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDIN 107
N P LI E+ +A F +FDKDG G+IT +E + G +E+ + D++
Sbjct: 106 NEPT-LIREWGDAVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFRHCDLD 161
>pdb|1S3P|A Chain A, Crystal Structure Of Rat Alpha-parvalbumin S55d/e59d
Mutant
Length = 109
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFARE---EELQQMLEEVDING 108
+ K+ F + DKD DG I ++ELG +++ AR+ +E + ++ D +G
Sbjct: 42 DVKKVFHILDKDKDGFIDEDELGSILKGFSSDARDLSAKETKTLMAAGDKDG 93
>pdb|2GGZ|A Chain A, Crystal Structure Of Human Guanylate Cyclase Activating
Protein-3
pdb|2GGZ|B Chain B, Crystal Structure Of Human Guanylate Cyclase Activating
Protein-3
Length = 211
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSL----GQ--FAREEELQQMLEEVDIN 107
+ K F+L+D DG+GSI K EL + ++ GQ + EE + + ++DIN
Sbjct: 94 KLKWYFKLYDADGNGSIDKNELLDMFMAVQALNGQQTLSPEEFINLVFHKIDIN 147
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 13/74 (17%)
Query: 144 NYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRID-------------FNGD 190
N G++ + A + + ++ E++++ K D DG+G ID NG
Sbjct: 69 NKDGFVDFLEFIAAVNLIMQEKMEQKLKWYFKLYDADGNGSIDKNELLDMFMAVQALNGQ 128
Query: 191 GYFSFEEFVEIVYN 204
S EEF+ +V++
Sbjct: 129 QTLSPEEFINLVFH 142
>pdb|1PON|B Chain B, Site Iii-Site Iv Troponin C Heterodimer, Nmr
Length = 36
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 21/24 (87%)
Query: 165 LSEEEIEDMIKEVDVDGDGRIDFN 188
++EE+IED++K+ D + DGRIDF+
Sbjct: 2 VTEEDIEDLMKDSDKNNDGRIDFD 25
>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420
Length = 504
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 60 EFKEAFRLFDKDGDGSITKEEL---GRVMRS----LGQFAR-EEELQQMLEEVDINGKKA 111
E + F+ DK+GDG + K+EL V+R+ LG+ EEE+ +L+EVD +
Sbjct: 356 ELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDKNGY 415
Query: 112 GNYS 115
YS
Sbjct: 416 IEYS 419
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 61 FKEAFRLFDKDGDGSITKEELGRV 84
+ AF LFD D G ITKEEL +
Sbjct: 437 LRRAFNLFDTDKSGKITKEELANL 460
>pdb|2KAX|A Chain A, Solution Structure And Dynamics Of S100a5 In The Apo And
Ca2+ -Bound States
pdb|2KAX|B Chain B, Solution Structure And Dynamics Of S100a5 In The Apo And
Ca2+ -Bound States
pdb|2KAY|A Chain A, Solution Structure And Dynamics Of S100a5 In The Ca2+
-Bound States
pdb|2KAY|B Chain B, Solution Structure And Dynamics Of S100a5 In The Ca2+
-Bound States
pdb|4DIR|A Chain A, 2.6 Angstrom X-ray Structure Of Human Ca(2+)-s100a5
pdb|4DIR|B Chain B, 2.6 Angstrom X-ray Structure Of Human Ca(2+)-s100a5
Length = 92
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 149 ISASDLRAVLQ---CLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYN 204
+S +L+ +++ CLGE + E I+D++K +D + D IDF Y F + + YN
Sbjct: 29 LSRKELKELIKKELCLGE-MKESSIDDLMKSLDKNSDQEIDFK--EYSVFLTMLCMAYN 84
>pdb|1BJF|A Chain A, Crystal Structure Of Recombinant Bovine Neurocalcin Delta
At 2.4 Angstroms
pdb|1BJF|B Chain B, Crystal Structure Of Recombinant Bovine Neurocalcin Delta
At 2.4 Angstroms
Length = 193
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 13/73 (17%)
Query: 17 AFRLFDKDGDG-VQARHFRQXXXXXXXXYTTTMLYSNSPVFLIVEFKEAFRLFDKDGDGS 75
FR FD +GDG + R F L S L + K AF ++D DG+G
Sbjct: 68 VFRTFDANGDGTIDFREF------------IIALSVTSRGKLEQKLKWAFSMYDLDGNGY 115
Query: 76 ITKEELGRVMRSL 88
I+K E+ +++++
Sbjct: 116 ISKAEMLEIVQAI 128
>pdb|3H4S|E Chain E, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 135
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 146 RGYISASDLRAVLQCLG-EDLSEEEIEDMIKEVDVDGDGRID 186
R I+A LR LG E +S+E+ + M++E D+DGDG ++
Sbjct: 54 RHLITAESLRRNSGILGIEGMSKEDAQGMVREGDLDGDGALN 95
>pdb|3MSE|B Chain B, Crystal Structure Of C-Terminal Domain Of Pf110239
Length = 180
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 63 EAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIMNHCGA 122
E F D + +GS++ E+ V+ S+G ++ ++ ++L+ +DIN + GN +
Sbjct: 43 ELFYKLDTNHNGSLSHREIYTVLASVG--IKKWDINRILQALDINDR--GNITYTEFMAG 98
Query: 123 VVNALDXXXXXXXXXXXXXHKNYRGYISASDLRAVLQ 159
+ K+ GYIS SD+ +++
Sbjct: 99 CYRWKNIESTFLKAAFNKIDKDEDGYISKSDIVSLVH 135
>pdb|3DD4|A Chain A, Structural Basis Of Kchip4a Modulation Of Kv4.3 Slow
Inactivation
Length = 229
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 64 AFRLFDKDGDGSITKEELGRVMRSL 88
AF L+D + DG ITKEE+ +M+++
Sbjct: 143 AFNLYDINKDGYITKEEMLDIMKAI 167
>pdb|2BEC|A Chain A, Crystal Structure Of Chp2 In Complex With Its Binding
Region In Nhe1 And Insights Into The Mechanism Of Ph
Regulation
Length = 202
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 35/56 (62%), Gaps = 5/56 (8%)
Query: 64 AFRLFDKDGDGSITKEELGRVMRSL-GQFAREEELQQM----LEEVDINGKKAGNY 114
AF+L+D D DG I++ E+ +V+R + G EE+L+ + ++E D +G A ++
Sbjct: 119 AFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSF 174
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 5/46 (10%)
Query: 147 GYISASDLRAVLQCL-GEDLSEEEIEDM----IKEVDVDGDGRIDF 187
G IS ++ VL+ + G ++EE++E++ ++E D DGDG + F
Sbjct: 129 GKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSF 174
>pdb|1FPW|A Chain A, Structure Of Yeast Frequenin
pdb|2JU0|A Chain A, Structure Of Yeast Frequenin Bound To Pdtins 4-Kinase
Length = 190
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 65 FRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDIN 107
F +FDKD +G I EE V+ + + EE+L E D+N
Sbjct: 69 FTVFDKDNNGFIHFEEFITVLSTTSRGTLEEKLSWAFELYDLN 111
>pdb|2JJZ|A Chain A, Crystal Structure Of Human Iba2, Orthorhombic Crystal Form
Length = 150
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEV 104
+ FKE + FD + +G I L R+M LG E+++M+ EV
Sbjct: 49 LTAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEV 95
>pdb|2JJZ|B Chain B, Crystal Structure Of Human Iba2, Orthorhombic Crystal Form
pdb|2JJZ|C Chain C, Crystal Structure Of Human Iba2, Orthorhombic Crystal Form
pdb|2JJZ|D Chain D, Crystal Structure Of Human Iba2, Orthorhombic Crystal Form
pdb|2VTG|A Chain A, Crystal Structure Of Human Iba2, Trigonal Crystal Form
Length = 150
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEV 104
+ FKE + FD + +G I L R+M LG E+++M+ EV
Sbjct: 49 LTAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEV 95
>pdb|2CT9|A Chain A, The Crystal Structure Of Calcineurin B Homologous Proein 1
(Chp1)
pdb|2CT9|B Chain B, The Crystal Structure Of Calcineurin B Homologous Proein 1
(Chp1)
Length = 208
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 5/57 (8%)
Query: 64 AFRLFDKDGDGSITKEELGRVMRSL-GQFAREEEL----QQMLEEVDINGKKAGNYS 115
AFRL+D D D I+++EL +V+R + G +E+L + ++E D +G A +++
Sbjct: 118 AFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFT 174
>pdb|1OMD|A Chain A, Structure Of Oncomodulin Refined At 1.85 Angstroms
Resolution. An Example Of Extensive Molecular
Aggregation Via Ca2+
pdb|1RRO|A Chain A, Refinement Of Recombinant Oncomodulin At 1.30 Angstroms
Resolution
pdb|2NLN|A Chain A, Solution Structure Of Calcium-Free Rat Beta-Parvalbumin
Length = 108
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 11/61 (18%)
Query: 147 GYISASDLRAVLQCLGED---LSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVY 203
GY+ +L+ LQ D L+E E + ++ D DGDG+I +EF E+V+
Sbjct: 56 GYLDGDELKYFLQKFQSDARELTESETKSLMDAADNDGDGKI--------GADEFQEMVH 107
Query: 204 N 204
+
Sbjct: 108 S 108
>pdb|1UHH|A Chain A, Crystal Structure Of Cp-Aequorin
pdb|1UHH|B Chain B, Crystal Structure Of Cp-Aequorin
pdb|1UHJ|A Chain A, Crystal Structure Of Br-Aequorin
pdb|1UHJ|B Chain B, Crystal Structure Of Br-Aequorin
Length = 191
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 52 NSPVFLIVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDIN 107
N P + + F + DKD +G+IT +E ++ G E+ ++ DI+
Sbjct: 102 NEPTLIRIWGDALFDIVDKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDID 157
>pdb|2E30|A Chain A, Solution Structure Of The Cytoplasmic Region Of Na+H+
Exchanger 1 Complexed With Essential Cofactor
Calcineurin B Homologous Protein 1
Length = 195
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 5/57 (8%)
Query: 64 AFRLFDKDGDGSITKEELGRVMRSL-GQFAREEEL----QQMLEEVDINGKKAGNYS 115
AFRL+D D D I+++EL +V+R + G +E+L + ++E D +G A +++
Sbjct: 118 AFRLYDLDKDEKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFT 174
>pdb|2D8N|A Chain A, Crystal Structure Of Human Recoverin At 2.2 A Resolution
Length = 207
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 31/48 (64%)
Query: 64 AFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKA 111
AF L+D DG+G+I+K E+ ++ ++ + E+++ + ++ + K+A
Sbjct: 112 AFSLYDVDGNGTISKNEVLEIVXAIFKXITPEDVKLLPDDENTPEKRA 159
>pdb|1EJ3|A Chain A, Crystal Structure Of Aequorin
pdb|1EJ3|B Chain B, Crystal Structure Of Aequorin
pdb|1UHI|A Chain A, Crystal Structure Of I-aequorin
pdb|1UHI|B Chain B, Crystal Structure Of I-aequorin
pdb|1UHK|A Chain A, Crystal Structure Of N-Aequorin
pdb|1UHK|B Chain B, Crystal Structure Of N-Aequorin
Length = 191
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 52 NSPVFLIVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDIN 107
N P + + F + DKD +G+IT +E ++ G E+ ++ DI+
Sbjct: 102 NEPTLIRIWGDALFDIVDKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDID 157
>pdb|1HQV|A Chain A, Structure Of Apoptosis-Linked Protein Alg-2
Length = 191
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLG 89
I +++ FR +D+D G I K EL + + G
Sbjct: 92 ITDWQNVFRTYDRDNSGMIDKNELKQALSGFG 123
>pdb|2ZN8|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Alg-2
Length = 190
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLG 89
I +++ FR +D+D G I K EL + + G
Sbjct: 91 ITDWQNVFRTYDRDNSGMIDKNELKQALSGFG 122
>pdb|2I18|A Chain A, The Refined Structure Of C-Terminal Domain Of An Ef-Hand
Calcium Binding Protein From Entamoeba Histolytica
Length = 64
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 59 VEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
+ K ++L D DGDG +TKEE+ + G E++ + + + D NG
Sbjct: 5 IGLKVLYKLMDVDGDGKLTKEEVTSFFKKHGI----EKVAEQVMKADANG 50
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 24/52 (46%)
Query: 173 MIKEVDVDGDGRI------------------------DFNGDGYFSFEEFVE 200
+ K +DVDGDG++ D NGDGY + EEF+E
Sbjct: 10 LYKLMDVDGDGKLTKEEVTSFFKKHGIEKVAEQVMKADANGDGYITLEEFLE 61
>pdb|1TTX|A Chain A, Solution Stucture Of Human Beta Parvalbumin (Oncomodulin)
Refined With A Paramagnetism Based Strategy
Length = 109
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 11/61 (18%)
Query: 147 GYISASDLRAVLQCL---GEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVY 203
GY+ +L+ LQ +L+E E + ++ D DGDG+I EEF E+V+
Sbjct: 57 GYLDEEELKFFLQKFESGARELTESETKSLMAAADNDGDGKI--------GAEEFQEMVH 108
Query: 204 N 204
+
Sbjct: 109 S 109
>pdb|2ZN9|A Chain A, Crystal Structure Of Ca2+-bound Form Of Des3-20alg-2
pdb|2ZN9|B Chain B, Crystal Structure Of Ca2+-bound Form Of Des3-20alg-2
pdb|2ZND|A Chain A, Crystal Structure Of Ca2+-Free Form Of Des3-20alg-2
Length = 172
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLG 89
I +++ FR +D+D G I K EL + + G
Sbjct: 73 ITDWQNVFRTYDRDNSGMIDKNELKQALSGFG 104
>pdb|2ZRS|A Chain A, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|B Chain B, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|C Chain C, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|D Chain D, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|E Chain E, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|F Chain F, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|G Chain G, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|H Chain H, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|B Chain B, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|C Chain C, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|D Chain D, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|E Chain E, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|F Chain F, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|G Chain G, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|H Chain H, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
Length = 168
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLG 89
I +++ FR +D+D G I K EL + + G
Sbjct: 69 ITDWQNVFRTYDRDNSGMIDKNELKQALSGFG 100
>pdb|2ZNE|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
Complexed With Alix Abs Peptide
pdb|2ZNE|B Chain B, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
Complexed With Alix Abs Peptide
Length = 169
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLG 89
I +++ FR +D+D G I K EL + + G
Sbjct: 70 ITDWQNVFRTYDRDNSGMIDKNELKQALSGFG 101
>pdb|2D58|A Chain A, Human Microglia-Specific Protein Iba1
Length = 107
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 61 FKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEV 104
FKE + FD +G+G I L R++ LG EL++++ EV
Sbjct: 34 FKEKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEV 77
>pdb|1SL8|A Chain A, Calcium-Loaded Apo-Aequorin From Aequorea Victoria
Length = 191
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 50 YSNSPVFLIVEFKEA-FRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDIN 107
YS + + LI + +A F + DKD +G+I+ +E +S G E+ ++ DI+
Sbjct: 99 YSKNQITLIRLWGDALFDIIDKDQNGAISLDEWKAYTKSAGIIQSSEDCEETFRVCDID 157
>pdb|1K95|A Chain A, Crystal Structure Of Des(1-52)grancalcin With Bound
Calcium
pdb|1K94|A Chain A, Crystal Structure Of Des(1-52)grancalcin With Bound
Calcium
pdb|1K94|B Chain B, Crystal Structure Of Des(1-52)grancalcin With Bound
Calcium
Length = 165
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 61 FKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGK 109
+KE F D+DG G++ EL + + +G + L +++ NG+
Sbjct: 72 WKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKNGR 120
>pdb|1F4O|A Chain A, Crystal Structure Of Grancalcin With Bound Calcium
pdb|1F4O|B Chain B, Crystal Structure Of Grancalcin With Bound Calcium
pdb|1F4Q|A Chain A, Crystal Structure Of Apo Grancalcin
pdb|1F4Q|B Chain B, Crystal Structure Of Apo Grancalcin
Length = 165
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 61 FKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGK 109
+KE F D+DG G++ EL + + +G + L +++ NG+
Sbjct: 72 WKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKNGR 120
>pdb|1XVJ|A Chain A, Crystal Structure Of Rat Alpha-Parvalbumin D94sG98E MUTANT
pdb|1XVJ|B Chain B, Crystal Structure Of Rat Alpha-Parvalbumin D94sG98E MUTANT
Length = 109
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 62 KEAFRLFDKDGDGSITKEELGRVMRSLGQFARE---EELQQMLEEVDING 108
K+ F + DKD G I ++ELG +++ AR+ +E + ++ D +G
Sbjct: 44 KKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDG 93
>pdb|1RTP|1 Chain 1, Refined X-ray Structure Of Rat Parvalbumin, A Mammalian
Alpha-lineage Parvalbumin, At 2.0 A Resolution
pdb|1RTP|2 Chain 2, Refined X-ray Structure Of Rat Parvalbumin, A Mammalian
Alpha-lineage Parvalbumin, At 2.0 A Resolution
pdb|1RTP|3 Chain 3, Refined X-ray Structure Of Rat Parvalbumin, A Mammalian
Alpha-lineage Parvalbumin, At 2.0 A Resolution
pdb|1RWY|A Chain A, Crystal Structure Of Rat Alpha-parvalbumin At 1.05
Resolution
pdb|1RWY|B Chain B, Crystal Structure Of Rat Alpha-parvalbumin At 1.05
Resolution
pdb|1RWY|C Chain C, Crystal Structure Of Rat Alpha-parvalbumin At 1.05
Resolution
pdb|2JWW|A Chain A, Calcium-Free Rat Alpha-Parvalbumin
Length = 109
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 62 KEAFRLFDKDGDGSITKEELGRVMRSLGQFARE---EELQQMLEEVDING 108
K+ F + DKD G I ++ELG +++ AR+ +E + ++ D +G
Sbjct: 44 KKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDG 93
>pdb|3AAK|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Des3-20alg-2f122a
Length = 172
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLG 89
I +++ FR +D+D G I K EL + + G
Sbjct: 73 ITDWQNVFRTYDRDNSGMIDKNELKQALSGAG 104
>pdb|1G33|A Chain A, Crystal Structure Of Rat Parvalbumin Without The
N-Terminal Domain
Length = 73
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFARE---EELQQMLEEVDING 108
+ K+ F + DKD G I ++ELG +++ AR+ +E + ++ D +G
Sbjct: 6 DVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDG 57
>pdb|2G2B|A Chain A, Nmr Structure Of The Human Allograft Inflammatory Factor 1
Length = 150
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 61 FKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEV 104
FKE + FD +G+G I L R++ LG EL++++ EV
Sbjct: 53 FKEKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEV 96
>pdb|5PAL|A Chain A, Crystal Structure Of The Unique Parvalbumin Component From
Muscle Of The Leopard Shark (Triakis Semifasciata). The
First X-Ray Study Of An Alpha-Parvalbumin
Length = 109
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 143 KNYRGYISASDLRAVLQCL---GEDLSEEEIEDMIKEVDVDGDGRI 185
K+ G+I +L+ VL+ G DL++ E + ++ D D DG+I
Sbjct: 52 KDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKI 97
>pdb|2EWF|A Chain A, Crystal Structure Of The Site-specific Dna Nickase
N.bspd6i
Length = 610
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 182 DGRIDFNGDGYFSFEEFVEIVYNMGATTEEKTADQEEKELRDAFREVEDIADEVSDCVRN 241
+ +++F + YF F+ F +I N+G E K+ + ++ R D+AD + R
Sbjct: 196 NKKLEFT-ENYF-FKRFEKIYGNVGKIREGKSDSSHKSKIETKMRNARDVADATTRYFRY 253
Query: 242 TG 243
TG
Sbjct: 254 TG 255
>pdb|2YIK|A Chain A, Catalytic Domain Of Clostridium Thermocellum Celt
Length = 611
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 144 NYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVY 203
++RG D R L ++S+ I +D DGDG++D +G G+ + V+ +
Sbjct: 67 SWRGDCHVYDARLPLDSQNTNMSDGFISSNRSVLDPDGDGKVDVSG-GFHDAGDHVK--F 123
Query: 204 NMGATTEEKTADQEEKELRDAFREV 228
+ T E +D FR
Sbjct: 124 GLPEAYAASTVGWGYYEFKDQFRAT 148
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,333,651
Number of Sequences: 62578
Number of extensions: 318010
Number of successful extensions: 2550
Number of sequences better than 100.0: 293
Number of HSP's better than 100.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1045
Number of HSP's gapped (non-prelim): 1029
length of query: 324
length of database: 14,973,337
effective HSP length: 99
effective length of query: 225
effective length of database: 8,778,115
effective search space: 1975075875
effective search space used: 1975075875
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)