RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9152
(324 letters)
>gnl|CDD|185504 PTZ00184, PTZ00184, calmodulin; Provisional.
Length = 149
Score = 114 bits (288), Expect = 2e-31
Identities = 66/147 (44%), Positives = 90/147 (61%), Gaps = 12/147 (8%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G G
Sbjct: 10 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGN--GTIDFP 67
Query: 118 NHCGAVVNALDFGSGGWWFKS--KSGHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIK 175
+ + K K ++ G+ISA++LR V+ LGE L++EE+++MI+
Sbjct: 68 EFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIR 127
Query: 176 EVDVDGDGRIDFNGDGYFSFEEFVEIV 202
E DVDGDG+I+ +EEFV+++
Sbjct: 128 EADVDGDGQIN--------YEEFVKMM 146
Score = 50.5 bits (121), Expect = 8e-08
Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 18/104 (17%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G IDF EF+ ++
Sbjct: 22 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFP--------EFLTLM 73
Query: 203 YNMGATTEEKTADQEEKELRDAFREVEDIADEVSDCVRNTGELR 246
+ K D EE E+++AF+ + D + + ELR
Sbjct: 74 -----ARKMKDTDSEE-EIKEAFK----VFDRDGNGFISAAELR 107
Score = 36.3 bits (84), Expect = 0.007
Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 47/102 (46%)
Query: 13 EFKEAFRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDG 72
E KEAF++FD+DG+G
Sbjct: 85 EIKEAFKVFDRDGNGF-------------------------------------------- 100
Query: 73 DGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNY 114
I+ EL VM +LG+ +EE+ +M+ E D++G NY
Sbjct: 101 ---ISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINY 139
>gnl|CDD|227455 COG5126, FRQ1, Ca2+-binding protein (EF-Hand superfamily) [Signal
transduction mechanisms / Cytoskeleton / Cell division
and chromosome partitioning / General function
prediction only].
Length = 160
Score = 90.4 bits (225), Expect = 4e-22
Identities = 59/151 (39%), Positives = 83/151 (54%), Gaps = 21/151 (13%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKA------ 111
I E KEAF+LFD+D DG I + ELG+++RSLG E E+ ++ EE+D +
Sbjct: 19 IQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDAGNETVDFPEFL 78
Query: 112 GNYSIMNHCGAVVNALDFGSGGWWFKSKSGHKNYRGYISASDLRAVLQCLGEDLSEEEIE 171
S+ G L FK K++ GYIS +LR VL+ LGE LS+EE+E
Sbjct: 79 TVMSVKLKRGDKEEELR-----EAFKLFD--KDHDGYISIGELRRVLKSLGERLSDEEVE 131
Query: 172 DMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
++KE D DGDG ID +EEF +++
Sbjct: 132 KLLKEYDEDGDGEID--------YEEFKKLI 154
Score = 42.3 bits (100), Expect = 7e-05
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Query: 13 EFKEAFRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDG 72
E +EAF+LFDKD DG + S L E ++ + +D+DG
Sbjct: 93 ELREAFKLFDKDHDG--------YISIGELRRVLKSLGERLSD---EEVEKLLKEYDEDG 141
Query: 73 DGSITKEELGRVM 85
DG I EE +++
Sbjct: 142 DGEIDYEEFKKLI 154
Score = 41.5 bits (98), Expect = 1e-04
Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 32/116 (27%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDG------------------- 183
++ G I ++L +L+ LG + SE EI + +E+D +
Sbjct: 31 RDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDAGNETVDFPEFLTVMSVKLKRGDK 90
Query: 184 ---------RIDFNGDGYFSFEEFVEIVYNMGATTEEKTADQEEKELRDAFREVED 230
D + DGY S E ++ ++G E+ +D+E ++L + E D
Sbjct: 91 EEELREAFKLFDKDHDGYISIGELRRVLKSLG----ERLSDEEVEKLLKEYDEDGD 142
>gnl|CDD|185503 PTZ00183, PTZ00183, centrin; Provisional.
Length = 158
Score = 70.1 bits (172), Expect = 1e-14
Identities = 52/162 (32%), Positives = 76/162 (46%), Gaps = 38/162 (23%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
E +EAF LFD DG G+I +EL MRSLG ++EE++QM+ +VD +G
Sbjct: 16 KKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGS-------- 67
Query: 118 NHCGAVVNALDFGSGGWWFKSKSGHKNYR---------------GYISASDLRAVLQCLG 162
+DF K G ++ R G IS +L+ V + LG
Sbjct: 68 -------GKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELG 120
Query: 163 EDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYN 204
E +++EE+++MI E D +GDG I EEF I+
Sbjct: 121 ETITDEELQEMIDEADRNGDGEIS--------EEEFYRIMKK 154
Score = 27.3 bits (61), Expect = 7.2
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 11/74 (14%)
Query: 13 EFKEAFRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDG 72
E +AFRLFD D G S N L E +E D++G
Sbjct: 91 EILKAFRLFDDDKTGK--------ISLKNLKRVAKELGET---ITDEELQEMIDEADRNG 139
Query: 73 DGSITKEELGRVMR 86
DG I++EE R+M+
Sbjct: 140 DGEISEEEFYRIMK 153
>gnl|CDD|238008 cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily
of calcium sensors and calcium signal modulators; most
examples in this alignment model have 2 active canonical
EF hands. Ca2+ binding induces a conformational change
in the EF-hand motif, leading to the activation or
inactivation of target proteins. EF-hands tend to occur
in pairs or higher copy numbers.
Length = 63
Score = 62.6 bits (153), Expect = 6e-13
Identities = 27/49 (55%), Positives = 38/49 (77%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
E +EAFRLFDKDGDG+I+ +EL ++SLG+ EEE+ +M+ EVD +G
Sbjct: 1 ELREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDG 49
Score = 59.1 bits (144), Expect = 1e-11
Identities = 32/56 (57%), Positives = 42/56 (75%), Gaps = 8/56 (14%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
G ISA +L+A L+ LGE LSEEEI++MI+EVD DGDG+ID FEEF+E++
Sbjct: 15 GTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKID--------FEEFLELM 62
Score = 45.6 bits (109), Expect = 7e-07
Identities = 28/75 (37%), Positives = 32/75 (42%), Gaps = 13/75 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
E +EAFRLFDKDGDG + A + S E E R DKD
Sbjct: 1 ELREAFRLFDKDGDGTISADELKAALK------------SLGEGLSEEEIDEMIREVDKD 48
Query: 72 GDGSITKEELGRVMR 86
GDG I EE +M
Sbjct: 49 GDGKIDFEEFLELMA 63
Score = 26.7 bits (60), Expect = 3.2
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 8/48 (16%)
Query: 169 EIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEEKTADQ 216
E+ + + D DGDG I S +E + ++G E+ D+
Sbjct: 1 ELREAFRLFDKDGDGTI--------SADELKAALKSLGEGLSEEEIDE 40
>gnl|CDD|222177 pfam13499, EF_hand_5, EF-hand domain pair.
Length = 60
Score = 48.5 bits (116), Expect = 5e-08
Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 4/56 (7%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
GYI +LR +L+ LG L++EE+E++I+ ID +GDG SFEEF+E +
Sbjct: 9 GYIDVEELRKLLKALGLKLTDEEVEELIEAD----FNEIDKDGDGRISFEEFLEAM 60
Score = 38.9 bits (91), Expect = 2e-04
Identities = 18/47 (38%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 66 RLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEE----VDING 108
+L DKDGDG I EEL +++++LG +EE+++++E +D +G
Sbjct: 1 KLLDKDGDGYIDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDG 47
Score = 32.0 bits (73), Expect = 0.039
Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 9/64 (14%)
Query: 19 RLFDKDGDG-VQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDGDGSIT 77
+L DKDGDG + R+ T + + F DKDGDG I+
Sbjct: 1 KLLDKDGDGYIDVEELRKLLKALGLKLTDEEVEE--------LIEADFNEIDKDGDGRIS 52
Query: 78 KEEL 81
EE
Sbjct: 53 FEEF 56
Score = 26.2 bits (58), Expect = 5.8
Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 184 RIDFNGDGYFSFEEFVEIVYNMGATTEEKTADQEEKELRDAFREV 228
+D +GDGY EE +++ +G + T ++ E+ + F E+
Sbjct: 2 LLDKDGDGYIDVEELRKLLKALG---LKLTDEEVEELIEADFNEI 43
>gnl|CDD|222407 pfam13833, EF_hand_6, EF-hand domain pair.
Length = 53
Score = 47.1 bits (113), Expect = 2e-07
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 146 RGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFN 188
+G I+ +L+ L LG LSEEE++ + +E D DGDG+I F
Sbjct: 2 KGLITREELKRALALLGISLSEEEVDILFREFDTDGDGKISFE 44
Score = 33.6 bits (78), Expect = 0.008
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 72 GDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGK 109
G IT+EEL R + LG EEE+ + E D +G
Sbjct: 1 EKGLITREELKRALALLGISLSEEEVDILFREFDTDGD 38
Score = 26.7 bits (60), Expect = 2.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSL 88
E FR FD DGDG I+ EE +++ L
Sbjct: 25 EVDILFREFDTDGDGKISFEEFCVLLQRL 53
>gnl|CDD|197492 smart00054, EFh, EF-hand, calcium binding motif. EF-hands are
calcium-binding motifs that occur at least in pairs.
Links between disease states and genes encoding
EF-hands, particularly the S100 subclass, are emerging.
Each motif consists of a 12 residue loop flanked on
either side by a 12 residue alpha-helix. EF-hands
undergo a conformational change unpon binding calcium
ions.
Length = 29
Score = 43.9 bits (105), Expect = 1e-06
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSL 88
E KEAFRLFDKDGDG I EE ++++L
Sbjct: 1 ELKEAFRLFDKDGDGKIDFEEFKDLLKAL 29
Score = 33.1 bits (77), Expect = 0.007
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 8/34 (23%)
Query: 169 EIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
E+++ + D DGDG+ID FEEF +++
Sbjct: 1 ELKEAFRLFDKDGDGKID--------FEEFKDLL 26
Score = 30.4 bits (70), Expect = 0.081
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 13 EFKEAFRLFDKDGDG 27
E KEAFRLFDKDGDG
Sbjct: 1 ELKEAFRLFDKDGDG 15
>gnl|CDD|205583 pfam13405, EF_hand_4, EF-hand domain.
Length = 30
Score = 43.7 bits (104), Expect = 1e-06
Identities = 20/30 (66%), Positives = 25/30 (83%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLG 89
E +EAF+LFDKDGDG I+ EEL + +RSLG
Sbjct: 1 ELREAFKLFDKDGDGYISAEELRKALRSLG 30
Score = 27.6 bits (62), Expect = 0.87
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQFFS 38
E +EAF+LFDKDGDG + A R+
Sbjct: 1 ELREAFKLFDKDGDGYISAEELRKALR 27
>gnl|CDD|200946 pfam00036, efhand, EF hand. The EF-hands can be divided into two
classes: signaling proteins and buffering/transport
proteins. The first group is the largest and includes
the most well-known members of the family such as
calmodulin, troponin C and S100B. These proteins
typically undergo a calcium-dependent conformational
change which opens a target binding site. The latter
group is represented by calbindin D9k and do not
undergo calcium dependent conformational changes.
Length = 29
Score = 41.7 bits (99), Expect = 7e-06
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSL 88
E KEAF+ FDKDGDG I+ EE +++ L
Sbjct: 1 ELKEAFKEFDKDGDGKISFEEFKELLKKL 29
Score = 33.2 bits (77), Expect = 0.009
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 8/37 (21%)
Query: 169 EIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNM 205
E+++ KE D DGDG+I FEEF E++ +
Sbjct: 1 ELKEAFKEFDKDGDGKIS--------FEEFKELLKKL 29
Score = 28.6 bits (65), Expect = 0.31
Identities = 12/15 (80%), Positives = 13/15 (86%)
Query: 13 EFKEAFRLFDKDGDG 27
E KEAF+ FDKDGDG
Sbjct: 1 ELKEAFKEFDKDGDG 15
>gnl|CDD|205383 pfam13202, EF_hand_3, EF hand.
Length = 25
Score = 38.8 bits (92), Expect = 7e-05
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 61 FKEAFRLFDKDGDGSITKEELGRVM 85
K+ FR FD +GDG I+KEEL R++
Sbjct: 1 LKDLFRQFDTNGDGKISKEELKRLL 25
Score = 27.6 bits (63), Expect = 0.76
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 170 IEDMIKEVDVDGDGRIDF 187
++D+ ++ D +GDG+I
Sbjct: 1 LKDLFRQFDTNGDGKISK 18
Score = 24.9 bits (56), Expect = 5.6
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 14 FKEAFRLFDKDGDG 27
K+ FR FD +GDG
Sbjct: 1 LKDLFRQFDTNGDG 14
>gnl|CDD|238131 cd00213, S-100, S-100: S-100 domain, which represents the largest
family within the superfamily of proteins carrying the
Ca-binding EF-hand motif. Note that this S-100 hierarchy
contains only S-100 EF-hand domains, other EF-hands have
been modeled separately. S100 proteins are expressed
exclusively in vertebrates, and are implicated in
intracellular and extracellular regulatory activities.
Intracellularly, S100 proteins act as Ca-signaling or
Ca-buffering proteins. The most unusual characteristic
of certain S100 proteins is their occurrence in
extracellular space, where they act in a cytokine-like
manner through RAGE, the receptor for advanced glycation
products. Structural data suggest that many S100 members
exist within cells as homo- or heterodimers and even
oligomers; oligomerization contributes to their
functional diversification. Upon binding calcium, most
S100 proteins change conformation to a more open
structure exposing a hydrophobic cleft. This hydrophobic
surface represents the interaction site of S100 proteins
with their target proteins. There is experimental
evidence showing that many S100 proteins have multiple
binding partners with diverse mode of interaction with
different targets. In addition to S100 proteins (such as
S100A1,-3,-4,-6,-7,-10,-11,and -13), this group includes
the ''fused'' gene family, a group of calcium binding
S100-related proteins. The ''fused'' gene family
includes multifunctional epidermal differentiation
proteins - profilaggrin, trichohyalin, repetin,
hornerin, and cornulin; functionally these proteins are
associated with keratin intermediate filaments and
partially crosslinked to the cell envelope. These
''fused'' gene proteins contain N-terminal sequence with
two Ca-binding EF-hands motif, which may be associated
with calcium signaling in epidermal cells and
autoprocessing in a calcium-dependent manner. In
contrast to S100 proteins, "fused" gene family proteins
contain an extraordinary high number of almost perfect
peptide repeats with regular array of polar and charged
residues similar to many known cell envelope proteins.
Length = 88
Score = 33.2 bits (77), Expect = 0.023
Identities = 16/68 (23%), Positives = 36/68 (52%), Gaps = 13/68 (19%)
Query: 140 SGHKNYRGYISASDLRAVLQC-----LGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFS 194
SG + + +S +L+ +L+ L E ++ ++K++DV+ DG++D
Sbjct: 18 SGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVD-------- 69
Query: 195 FEEFVEIV 202
F+EF+ ++
Sbjct: 70 FQEFLVLI 77
>gnl|CDD|240156 cd05030, calgranulins, Calgranulins: S-100 domain found in proteins
belonging to the Calgranulin subgroup of the S100 family
of EF-hand calcium-modulated proteins, including S100A8,
S100A9, and S100A12 . Note that the S-100 hierarchy, to
which this Calgranulin group belongs, contains only
S-100 EF-hand domains, other EF-hands have been modeled
separately. These proteins are expressed mainly in
granulocytes, and are involved in inflammation, allergy,
and neuritogenesis, as well as in host-parasite
response. Calgranulins are modulated not only by
calcium, but also by other metals such as zinc and
copper. Structural data suggested that calgranulins may
exist in multiple structural forms, homodimers, as well
as hetero-oligomers. For example, the S100A8/S100A9
complex called calprotectin plays important roles in the
regulation of inflammatory processes, wound repair, and
regulating zinc-dependent enzymes as well as microbial
growth.
Length = 88
Score = 30.8 bits (70), Expect = 0.18
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 8/44 (18%)
Query: 170 IEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEEKT 213
I+ + +++D + DG++ SFEEF+ +V +G EK+
Sbjct: 53 IDKIFEDLDTNQDGQL--------SFEEFLVLVIKVGVAAHEKS 88
>gnl|CDD|183426 PRK12309, PRK12309, transaldolase/EF-hand domain-containing
protein; Provisional.
Length = 391
Score = 32.4 bits (74), Expect = 0.32
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 63 EAFRLFDKDGDGSITKEE 80
E FRL+D DGDG IT+EE
Sbjct: 338 EIFRLYDLDGDGFITREE 355
>gnl|CDD|212951 cd12018, SH3_Tks4_4, Fourth (C-terminal) Src homology 3 domain of
Tyrosine kinase substrate with four SH3 domains. Tks4,
also called SH3 and PX domain-containing protein 2B
(SH3PXD2B) or HOFI, is a Src substrate and scaffolding
protein that plays an important role in the formation of
podosomes and invadopodia, the dynamic actin-rich
structures that are related to cell migration and cancer
cell invasion. It is required in the formation of
functional podosomes, EGF-induced membrane ruffling, and
lamellipodia generation. It plays an important role in
cellular attachment and cell spreading. Tks4 is
essential for the localization of MT1-MMP (membrane-type
1 matrix metalloproteinase) to invadopodia. It contains
an N-terminal Phox homology (PX) domain and four SH3
domains. This model characterizes the fourth
(C-terminal) SH3 domain of Tks4. SH3 domains are protein
interaction domains that bind to proline-rich ligands
with moderate affinity and selectivity, preferentially
to PxxP motifs. They play versatile and diverse roles in
the cell including the regulation of enzymes, changing
the subcellular localization of signaling pathway
components, and mediating the formation of multiprotein
complex assemblies.
Length = 56
Score = 29.1 bits (65), Expect = 0.39
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 121 GAVVNALDFGSGGWWF-KSKSGHKNYRGYISASDLR 155
G V + S GWWF K SG + G+I ++ LR
Sbjct: 20 GTVFEVREKNSSGWWFCKVLSGGPVWEGWIPSNYLR 55
>gnl|CDD|238009 cd00052, EH, Eps15 homology domain; found in proteins implicated in
endocytosis, vesicle transport, and signal transduction.
The alignment contains a pair of EF-hand motifs,
typically one of them is canonical and binds to Ca2+,
while the other may not bind to Ca2+. A hydrophobic
binding pocket is formed by residues from both EF-hand
motifs. The EH domain binds to proteins containing NPF
(class I), [WF]W or SWG (class II), or H[TS]F (class
III) sequence motifs.
Length = 67
Score = 29.5 bits (67), Expect = 0.40
Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 10/58 (17%)
Query: 142 HKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFV 199
+ G IS + R L G L + + D D DG++D EEF
Sbjct: 9 DPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLD--------KEEFA 56
Score = 28.3 bits (64), Expect = 1.0
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 61 FKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGK 109
+ + FR D DGDG I+ +E + G L Q+ + D +
Sbjct: 1 YDQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKD 47
>gnl|CDD|220526 pfam10025, DUF2267, Uncharacterized conserved protein (DUF2267).
This domain, found in various hypothetical bacterial
proteins, has no known function.
Length = 126
Score = 30.2 bits (69), Expect = 0.50
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 154 LRAVLQCLGEDLSEEEIEDM-------IKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMG 206
RAVL+ L + L+ EE D+ ++ + DG G+ F EEF+ V
Sbjct: 25 TRAVLRTLRDRLTGEEAADLAAQLPEELRGLLYDGWDPAAGPGE-RFDAEEFLRRVAEEL 83
Query: 207 ATTEEKTADQ 216
A++
Sbjct: 84 GGDPPVDAER 93
>gnl|CDD|215520 PLN02964, PLN02964, phosphatidylserine decarboxylase.
Length = 644
Score = 31.0 bits (70), Expect = 0.94
Identities = 10/43 (23%), Positives = 24/43 (55%)
Query: 144 NYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRID 186
+ G +S S+ +++ G ++ + E++ K D++GDG +
Sbjct: 191 DEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVT 233
Score = 28.7 bits (64), Expect = 5.8
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
Query: 185 IDFNGDGYFSFEEFVEIVYNMGATTEEKTADQEEKELRDAFREVEDIADEVSDCVRNTGE 244
+D++ DG SF EF +++ G A +++EL A AD D V E
Sbjct: 188 VDYDEDGQLSFSEFSDLIKAFG----NLVAANKKEELFKA-------ADLNGDGVVTIDE 236
Query: 245 LREFIVLRE 253
L + L++
Sbjct: 237 LAALLALQQ 245
>gnl|CDD|187833 cd09702, Csx1_III-U, CRISPR/Cas system-associated protein Csx1.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Protein of this family often fused to HTH domain; Some
proteins could have an additional fusion with
RecB-family nuclease domain; Core domain appears to have
a Rossmann-like fold; loosely associated with CRISPR/Cas
systems; also known as TIGR02710 family.
Length = 378
Score = 30.6 bits (69), Expect = 1.0
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 214 ADQEEKELRDAFREVEDIADE--VSDCVRNTGELREFIVLREIDSGGRL-VVVRFDR 267
D KEL DI D+ ++D T + +VL I G L V+ F R
Sbjct: 52 IDGVVKELFALREAQMDIYDQEILADLTGGTKPMTAGLVLAAILYGKELSVITGFRR 108
>gnl|CDD|180892 PRK07220, PRK07220, DNA topoisomerase I; Validated.
Length = 740
Score = 30.9 bits (70), Expect = 1.0
Identities = 15/71 (21%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 206 GATTEEKTADQEEKELRDAFREVEDIADEVSDCVRNTGELREFIVLREIDSGGRLVVVRF 265
G E+ ++ + L F E++ +++ + +R LRE ++ + G ++VR
Sbjct: 546 GKIKEDAVLEESREMLEQVFDELDKNREKIRESLREG--LREDKIIGKCPLCGSDLMVRR 603
Query: 266 DRFVFRFGRFV 276
+ R RF+
Sbjct: 604 SK---RGSRFI 611
>gnl|CDD|226571 COG4086, COG4086, Predicted secreted protein [Function unknown].
Length = 299
Score = 30.1 bits (68), Expect = 1.2
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 161 LGEDLSEEEIEDMIKEVDVDGD 182
LGEDLSE + + ++KE+ VD D
Sbjct: 41 LGEDLSETQKQQLLKEMGVDPD 62
>gnl|CDD|130673 TIGR01612, 235kDa-fam, reticulocyte binding/rhoptry protein. This
model represents a group of paralogous families in
plasmodium species alternately annotated as reticulocyte
binding protein, 235-kDa family protein and rhoptry
protein. Rhoptry protein is localized on the cell surface
and is extremely large (although apparently lacking in
repeat structure) and is important for the process of
invasion of the RBCs by the parasite. These proteins are
found in P. falciparum, P. vivax and P. yoelii.
Length = 2757
Score = 30.4 bits (68), Expect = 1.6
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Query: 160 CLGEDLSEEEIEDMIKEVDVDG-DGRIDFNGDGYFSFEEFVEIVYNMGATTEEKTADQEE 218
CL E E IE I +D D + NGD S +EF+E + + ++K + ++
Sbjct: 1622 CLKE---TESIEKKISSFSIDSQDTELKENGDNLNSLQEFLESLKD-----QKKNIEDKK 1673
Query: 219 KELRDAFREVEDIADEVSDCVRN 241
KEL + E+E I +V +N
Sbjct: 1674 KELDELDSEIEKIEIDVDQHKKN 1696
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 30.1 bits (67), Expect = 1.8
Identities = 26/151 (17%), Positives = 47/151 (31%), Gaps = 11/151 (7%)
Query: 161 LGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEEKTADQEEKE 220
L +D + ED+ E + + + G + E + EE +EE
Sbjct: 595 LIQDDEKGNFEDLEDEENSSDNEMEESRGSSVTAENEESADEVDYETEREENARKKEELR 654
Query: 221 LRDAFREVEDIADEVSDCVRNTGE--LREFIVLR----EIDSGGRLVVVRFDRFVFRFGR 274
E D + D + + R + R+V+ +R GR
Sbjct: 655 GNFELEERGDPEKKDVDWYTEEKRKIEEQLKINRSEFETMVPESRVVIEG-----YRAGR 709
Query: 275 FVVFRLGKFVVFMFEVFCDHYNEISAGVSPT 305
+V L + + F Y + G+ P
Sbjct: 710 YVRIVLSHVPLEFVDEFNSRYPIVLGGLLPA 740
>gnl|CDD|240157 cd05031, S-100A10_like, S-100A10_like: S-100A10 domain found in
proteins similar to S100A10. S100A10 is a member of the
S100 family of EF-hand superfamily of calcium-binding
proteins. Note that the S-100 hierarchy, to which this
S-100A1_like group belongs, contains only S-100 EF-hand
domains, other EF-hands have been modeled separately.
S100 proteins are expressed exclusively in vertebrates,
and are implicated in intracellular and extracellular
regulatory activities. A unique feature of S100A10 is
that it contains mutation in both of the calcium binding
sites, making it calcium insensitive. S100A10 has been
detected in brain, heart, gastrointestinal tract,
kidney, liver, lung, spleen, testes, epidermis, aorta,
and thymus. Structural data supports the homo- and
hetero-dimeric as well as hetero-tetrameric nature of
the protein. S100A10 has multiple binding partners in
its calcium free state and is therefore involved in many
diverse biological functions.
Length = 94
Score = 28.2 bits (63), Expect = 1.8
Identities = 17/72 (23%), Positives = 38/72 (52%), Gaps = 13/72 (18%)
Query: 136 FKSKSGHKNYRGYISASDLRAVLQC-LGEDLSEEE----IEDMIKEVDVDGDGRIDFNGD 190
F +G + +S +L+ +++ L E L ++ ++ ++K++D + DG++
Sbjct: 14 FHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKV----- 68
Query: 191 GYFSFEEFVEIV 202
+FEEFV +V
Sbjct: 69 ---NFEEFVSLV 77
>gnl|CDD|213007 cd12074, SH3_Tks5_1, First Src homology 3 domain of Tyrosine kinase
substrate with five SH3 domains. Tks5, also called SH3
and PX domain-containing protein 2A (SH3PXD2A) or Five
SH (FISH), is a scaffolding protein and Src substrate
that is localized in podosomes, which are electron-dense
structures found in Src-transformed fibroblasts,
osteoclasts, macrophages, and some invasive cancer
cells. It binds and regulates some members of the ADAMs
family of transmembrane metalloproteases, which function
as sheddases and mediators of cell and matrix
interactions. It is required for podosome formation,
degradation of the extracellular matrix, and cancer cell
invasion. Tks5 contains an N-terminal Phox homology (PX)
domain and five SH3 domains. This model characterizes
the first SH3 domain of Tks5. SH3 domains are protein
interaction domains that bind to proline-rich ligands
with moderate affinity and selectivity, preferentially
to PxxP motifs. They play versatile and diverse roles in
the cell including the regulation of enzymes, changing
the subcellular localization of signaling pathway
components, and mediating the formation of multiprotein
complex assemblies.
Length = 53
Score = 27.4 bits (60), Expect = 1.9
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 107 NGKKAGNYSIMNHCGAVVNALDFGSGGWWFKSKSGHKNYRGYISASDLRA 156
N +K N I G VV+ ++ GWWF S + + G++ A+ L +
Sbjct: 7 NYEKQENSEISLQAGEVVDVIEKNESGWWFVSTAEEQ---GWVPATYLES 53
>gnl|CDD|226655 COG4192, COG4192, Signal transduction histidine kinase regulating
phosphoglycerate transport system [Signal transduction
mechanisms].
Length = 673
Score = 29.9 bits (67), Expect = 2.3
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 79 EELGRVMRSLGQFAREEELQQMLEEVDIN 107
E +G+++ SL QFAR+ + L+ V +N
Sbjct: 500 ERMGKIVNSLRQFARKNSSDESLQPVRLN 528
>gnl|CDD|216794 pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain
has no known function. The domain contains three
conserved cysteines at its C terminus.
Length = 162
Score = 28.7 bits (65), Expect = 2.4
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 161 LGEDLSEEEIEDMIKEVDVDGDGRIDF 187
+G+ L EE E KEV++DG +IDF
Sbjct: 33 IGKLLHEESYEREKKEVEIDGSIKIDF 59
>gnl|CDD|218939 pfam06207, DUF1002, Protein of unknown function (DUF1002). This
protein family has no known function. Its members are
about 300 amino acids in length. It has so far been
detected in Firmicute bacteria and some archaebacteria.
Length = 222
Score = 29.1 bits (66), Expect = 2.8
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 161 LGEDLSEEEIEDMIKEVDVDGDG--RIDFNGDGY 192
LG DLSE + ++++K VD D I +
Sbjct: 1 LGADLSESQKQEVLKYFGVDPDNVTTITVTNEEE 34
>gnl|CDD|219540 pfam07730, HisKA_3, Histidine kinase. This is the dimerisation and
phosphoacceptor domain of a sub-family of histidine
kinases. It shares sequence similarity with pfam00512
and pfam07536.
Length = 64
Score = 26.8 bits (60), Expect = 3.0
Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 204 NMGATTEEKTADQEEKELRDAFREVEDIADEVSDCVRNT-GELR 246
+ + ++ +E R+ E+ ++A E +R G+LR
Sbjct: 21 KLQLELARRLLARDPEEAREQLDEIRELAREALAELRRLLGDLR 64
>gnl|CDD|212763 cd11829, SH3_GAS7, Src homology 3 domain of Growth Arrest Specific
protein 7. GAS7 is mainly expressed in the brain and is
required for neurite outgrowth. It may also play a role
in the protection and migration of embryonic stem cells.
Treatment-related acute myeloid leukemia (AML) has been
reported resulting from mixed-lineage leukemia
(MLL)-GAS7 translocations as a complication of primary
cancer treatment. GAS7 contains an N-terminal SH3
domain, followed by a WW domain, and a central F-BAR
domain. SH3 domains are protein interaction domains that
bind to proline-rich ligands with moderate affinity and
selectivity, preferentially to PxxP motifs. They play
versatile and diverse roles in the cell including the
regulation of enzymes, changing the subcellular
localization of signaling pathway components, and
mediating the formation of multiprotein complex
assemblies.
Length = 52
Score = 26.7 bits (59), Expect = 3.0
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 121 GAVVNALDFGSGGWWFKSKSGHKNYRGYISAS 152
G ++ L GGWW K G RG+ AS
Sbjct: 22 GELIRVLQAPDGGWWEGEKDGL---RGWFPAS 50
>gnl|CDD|222711 pfam14366, DUF4410, Domain of unknown function (DUF4410). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 187 and 238 amino
acids in length.
Length = 119
Score = 27.7 bits (62), Expect = 3.4
Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 2/70 (2%)
Query: 201 IVYNMGATTEEKTADQEE--KELRDAFREVEDIADEVSDCVRNTGELREFIVLREIDSGG 258
V + A E D EE K+ DA E +AD + +++ G +
Sbjct: 2 YVSDFDAEGAEVKLDSEEAAKQQEDAKSAPELLADALVKELKSKGLFAVRSDPPPLPKNA 61
Query: 259 RLVVVRFDRF 268
+V F +
Sbjct: 62 LIVEGDFTKI 71
>gnl|CDD|217775 pfam03874, RNA_pol_Rpb4, RNA polymerase Rpb4. This family includes
the Rpb4 protein. This family also includes C17 (aka
CGRP-RCP) is an essential subunit of RNA polymerase III.
C17 forms a subcomplex with C25 which is likely to be
the counterpart of subcomplex Rpb4/7 in Pol II.
Length = 110
Score = 27.5 bits (62), Expect = 3.6
Identities = 9/29 (31%), Positives = 20/29 (68%)
Query: 150 SASDLRAVLQCLGEDLSEEEIEDMIKEVD 178
+A +LRA+++ L SEE++E+++ +
Sbjct: 79 TADELRAIIESLESRFSEEQLEEILDILS 107
>gnl|CDD|147082 pfam04740, LXG, LXG domain of WXG superfamily. This domain is
present is the N-terminal region of a group of
polymorphic toxin proteins in bacteria. It is predicted
to use Type VII secretion pathway to mediate export of
bacterial toxins.
Length = 204
Score = 28.4 bits (64), Expect = 4.0
Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 12/80 (15%)
Query: 168 EEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEEKTADQEEKELRDAFRE 227
E+I+ + +V+ +G ID EEF+E G E+ ++ + +
Sbjct: 78 EKIKSFLSDVESSSNGYID---------EEFLEHELKNGLKKAEEKTEELKDAINSILAS 128
Query: 228 VEDIADEVSDCVRNTGELRE 247
+ DI V +T +E
Sbjct: 129 ISDI---VHLPKFSTSAFQE 145
>gnl|CDD|181626 PRK09052, PRK09052, acetyl-CoA acetyltransferase; Provisional.
Length = 399
Score = 28.8 bits (65), Expect = 4.2
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 21/87 (24%)
Query: 193 FSFEEFVEIVYNMGATTEEKTADQEE--KELRDAF-----------REVEDIADEVSDC- 238
F+ +E V I Y MG T EK A+Q + +E +DAF ++ + DE++
Sbjct: 142 FARDENVGIAYGMGLTA-EKVAEQWKVSREDQDAFALESHQKAIAAQQAGEFKDEITPYE 200
Query: 239 VR------NTGELREFIVLREIDSGGR 259
+ TGE+ ++D G R
Sbjct: 201 ITERFPDLATGEVDVKTRTVDLDEGPR 227
>gnl|CDD|225427 COG2872, COG2872, Predicted metal-dependent hydrolases related to
alanyl-tRNA synthetase HxxxH domain [General function
prediction only].
Length = 241
Score = 28.1 bits (63), Expect = 4.9
Identities = 30/118 (25%), Positives = 43/118 (36%), Gaps = 14/118 (11%)
Query: 164 DLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMG-ATTEEKTADQEEKELR 222
D E+ ED I+EV+ + + N F E G + K E ++R
Sbjct: 130 DFDGEDTEDEIEEVEALANELVKENLPVIIYFIPREEAEKLPGLVKLKNKVPPDVEGKIR 189
Query: 223 DAFREVEDIADEVSDC---VRNTGELREFIVLR-EIDSGGRLVVVRFDRFVFRFGRFV 276
E+ DI D V+NTGE+ E +L+ E G R F G
Sbjct: 190 --IVEIGDI-DVQPCGGTHVKNTGEIGEIKILKTEKKGKGNR------RVYFTLGERA 238
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase.
Length = 784
Score = 28.7 bits (64), Expect = 5.8
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 64 AFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDIN 107
A L G+G+ T+EE M+ L + R E L+ +L+E N
Sbjct: 690 AVSLHMIHGNGNSTEEEAIESMKGLIESQRRELLRLVLQEKGSN 733
>gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed.
Length = 556
Score = 28.3 bits (64), Expect = 6.2
Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 26/88 (29%)
Query: 187 FNGDGYFSFEEFVEIV--------------------YNMGATTEEKTADQEEKELRDAFR 226
N D F++EEFV V G E++EL
Sbjct: 367 ENSDTDFTWEEFVRRVNSELADKYGNLVNRVLSFIEKYFGGIVPPGELGDEDRELIA--- 423
Query: 227 EVEDIADEVSDCVRNTGELREFIVLREI 254
E E + EV + + GE ++ L EI
Sbjct: 424 EAEALFKEVGELLEA-GEFKK--ALEEI 448
>gnl|CDD|216621 pfam01640, Peptidase_C10, Peptidase C10 family. This family
represents just the active peptide part of these
proteins. Residues 1-120 are not part of the model as
they form the pro-peptide, which before cleavage blocks
the active site from the substrate. The catalytic
residues of histidine and cysteine are brought close
together at the active site by the folding of the active
peptide.
Length = 192
Score = 27.6 bits (62), Expect = 7.1
Identities = 30/132 (22%), Positives = 43/132 (32%), Gaps = 41/132 (31%)
Query: 98 QQMLEEVDINGKKAGNYSI---MNHCGAVVNAL--DFGSGGWWFKSKSGHKNYRGYISAS 152
M + D N + ++ M G VN GSG + + + +NY GY
Sbjct: 67 ANMPDTYDGNSTEEQADAVATLMRDVGVAVNMQYSPDGSGAYSQNAVNALRNYFGY---- 122
Query: 153 DLRAVLQCLG-EDLSEEEIEDMIK-EVD-------------------VDG---DGRIDFN 188
++ L D + E DMI+ E+ DG DG N
Sbjct: 123 --DKSVRYLDRSDYTAAEWLDMIRNELSAGRPVYYSGSSKGGGHAFVCDGYDEDGLFHVN 180
Query: 189 ------GDGYFS 194
DGYF
Sbjct: 181 WGWGGQSDGYFD 192
>gnl|CDD|223131 COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic
ion transport and metabolism].
Length = 304
Score = 28.0 bits (63), Expect = 7.2
Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 156 AVLQCLGEDLSEEEIEDMIKEV-DVDGDGRIDF---NGDGYFSFEEF-VEIVYNMGATTE 210
+V + + L E++E + + V G + G F + +E+ ++
Sbjct: 203 SVNELMDAALDPEDLEKIRAIILSVPGVKGVHDLRTRKSGSRIFIDVHIEVDPDLSLEEA 262
Query: 211 EKTADQEEKELRDAFREVEDI 231
+ AD+ EK ++ F +V D+
Sbjct: 263 HEIADEVEKRIKKEFPKVADV 283
>gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional.
Length = 627
Score = 28.1 bits (64), Expect = 7.3
Identities = 8/12 (66%), Positives = 11/12 (91%)
Query: 165 LSEEEIEDMIKE 176
LS+EEIE M+K+
Sbjct: 500 LSDEEIERMVKD 511
>gnl|CDD|236592 PRK09616, pheT, phenylalanyl-tRNA synthetase subunit beta;
Reviewed.
Length = 552
Score = 27.9 bits (63), Expect = 8.4
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 11/56 (19%)
Query: 149 ISASDLRAVLQCLGEDLSEEEIED---MIK-EVDVDGDGRID--FNGD--GYFSFE 196
++ DL ++ G DL ++E+ED M+K EV+ D I FN D S E
Sbjct: 6 VNKDDLERLI---GIDLEDDELEDLLPMLKCEVEEIEDDEIKIEFNPDRPDLLSVE 58
>gnl|CDD|206779 cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP),
signaling domain. Methyl-accepting chemotaxis proteins
(MCPs or chemotaxis receptors) are an integral part of
the transmembrane protein complex that controls
bacterial chemotaxis, together with the histidine kinase
CheA, the receptor-coupling protein CheW,
receptor-modification enzymes, and localized
phosphatases. MCPs contain a four helix trans membrane
region, an N-terminal periplasmic ligand binding domain,
and a C-terminal HAMP domain followed by a cytoplasmic
signaling domain. This C-terminal signaling domain
dimerizes into a four-helix bundle and interacts with
CheA through the adaptor protein CheW.
Length = 200
Score = 27.2 bits (61), Expect = 8.7
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 7/62 (11%)
Query: 200 EIVYNMGATTE-----EKTADQEEKELRDAFREVEDIADEVSDCVRNTGELREFIVLREI 254
E+ + E + A++ + DA ++ I + V + V EL E EI
Sbjct: 9 EVAASADQVAETSQQAAELAEKGREAAEDAINQMNQIDESVDEAVSAVEELEESS--AEI 66
Query: 255 DS 256
Sbjct: 67 GE 68
>gnl|CDD|176549 cd08607, GDPD_GDE5, Glycerophosphodiester phosphodiesterase domain
of putative mammalian glycerophosphodiester
phosphodiesterase GDE5 and similar proteins. This
subfamily corresponds to the glycerophosphodiester
phosphodiesterase domain (GDPD) present in putative
mammalian GDE5 and similar proteins. Mammalian GDE5 is
widely expressed in mammalian tissues, with highest
expression in the spinal chord. Although its biological
function remains unclear, mammalian GDE5 shows higher
sequence homology to fungal and plant
glycerophosphodiester phosphodiesterases (GP-GDEs, EC
3.1.4.46) than to other bacterial and mammalian GP-GDEs.
It may also hydrolyze glycerophosphodiesters to
sn-glycerol-3-phosphate (G3P) and the corresponding
alcohols. In addition to C-terminal GDPD domain, all
members in this subfamily have a starch binding domain
(CBM20) in the N-terminus, which suggests these proteins
may play a distinct role in glycerol metabolism.
Length = 290
Score = 27.6 bits (62), Expect = 9.0
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 151 ASDLRAVLQCLGEDLSEEEIEDMIKEVDVDG 181
A L V+ C G+DL++ E +KE+ VDG
Sbjct: 254 AKSLGLVVFCWGDDLNDPENRKKLKELGVDG 284
>gnl|CDD|193239 pfam12763, efhand_3, Cytoskeletal-regulatory complex EF hand. This
is an efhand family from the N-terminal of actin
cytoskeleton-regulatory complex END3 and similar
proteins from fungi and closely related species.
Length = 104
Score = 26.6 bits (59), Expect = 9.1
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 140 SGHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFV 199
SG K ++ + VL+ L ++++ + D+D DG++D FEEF
Sbjct: 17 SGLKPENNKLTGDQVSPVLK--NSRLPDDQLAKIWDLADIDSDGKLD--------FEEFC 66
>gnl|CDD|240152 cd05025, S-100A1, S-100A1: S-100A1 domain found in proteins similar
to S100A1. S100A1 is a calcium-binding protein belonging
to a large S100 vertebrate-specific protein family
within the EF-hand superfamily of calcium-binding
proteins. Note that the S-100 hierarchy, to which this
S-100A1 group belongs, contains only S-100 EF-hand
domains, other EF-hands have been modeled separately. As
is the case with many other members of S100 protein
family, S100A1 is implicated in intracellular and
extracellular regulatory activities, including
interaction with myosin-associated twitchin kinase,
actin-capping protein CapZ, sinapsin I, and tubulin.
Structural data suggests that S100A1 proteins exist
within cells as antiparallel homodimers, while
heterodimers with S100A4 and S100B also has been
reported. Upon binding calcium S100A1 changes
conformation to expose a hydrophobic cleft which is the
interaction site of S100A1 with its more that 20 known
target proteins.
Length = 92
Score = 26.4 bits (58), Expect = 9.1
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 13/72 (18%)
Query: 136 FKSKSGHKNYRGYISASDLRAVLQC-LGEDLSEEE----IEDMIKEVDVDGDGRIDFNGD 190
F + SG + + +S +L+ +LQ L + L ++ ++ ++KE+D +GDG +D
Sbjct: 15 FHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVD---- 70
Query: 191 GYFSFEEFVEIV 202
F+EFV +V
Sbjct: 71 ----FQEFVVLV 78
>gnl|CDD|215791 pfam00210, Ferritin, Ferritin-like domain. This family contains
ferritins and other ferritin-like proteins such as
members of the DPS family and bacterioferritins.
Length = 142
Score = 26.9 bits (60), Expect = 9.7
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 13/81 (16%)
Query: 163 EDLSEEEIE--DMIKEVDVDGDGRI-DFNGDGYFSFEEFVEIV-YNMGATTEE--KTADQ 216
++ +EEE E D + E RI G + E +EI + + E + A +
Sbjct: 38 DEQAEEEREHADKLAE-------RILALGGKPVLTPVELLEIEPPDEFGSVLEALEAALE 90
Query: 217 EEKELRDAFREVEDIADEVSD 237
EKE+ ++ RE+ ++A+E D
Sbjct: 91 HEKEVTESLRELIELAEEEGD 111
>gnl|CDD|216551 pfam01523, PmbA_TldD, Putative modulator of DNA gyrase. tldD and
pmbA were found to suppress mutations in letD and
inhibitor of DNA gyrase. Therefore it has been
hypothesised that the TldD and PmbA proteins modulate
the activity of DNA gyrase. It has also been suggested
that PmbA may be involved in secretion.
Length = 289
Score = 27.6 bits (62), Expect = 9.8
Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 8/112 (7%)
Query: 163 EDLSEEEIEDMIKE-VDVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEEKTADQEEKEL 221
DLSEE ++ ++ + + D G S V +Y + AD +E
Sbjct: 49 SDLSEEALKKAVERALALAKLSPEDPAGLPDPSPLPPVPDLY------DPDPADLSLEEK 102
Query: 222 RDAFREVEDIADEVSDCVRNTGELREFIVLREI-DSGGRLVVVRFDRFVFRF 272
+ +E+E+ A V + +G + + I +S G V R
Sbjct: 103 IELLKELEEAALAVDPRISASGSYSDSVSEVIIANSEGLEVEYESTRVSLSV 154
>gnl|CDD|237755 PRK14555, PRK14555, hypothetical protein; Provisional.
Length = 145
Score = 26.8 bits (60), Expect = 9.9
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 145 YRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVD--VDGDGRI 185
+ + R VL+ L E L E E+E ++ E+D VD +G++
Sbjct: 53 LSARLEKKEAREVLKHLLELLDETELEKLLSELDERVDDEGKL 95
>gnl|CDD|107373 cd06378, PBP1_iGluR_NMDA_NR2, N-terminal
leucine/isoleucine/valine-binding protein (LIVBP)-like
domain of the NR2 subunit of NMDA receptor family.
N-terminal leucine/isoleucine/valine-binding protein
(LIVBP)-like domain of the NR2 subunit of NMDA receptor
family. The ionotropic N-methyl-d-asparate (NMDA)
subtype of glutamate receptor serves critical functions
in neuronal development, functioning, and degeneration
in the mammalian central nervous system. The functional
NMDA receptor is a heterotetramer composed of two NR1
and two NR2 (A, B, C, and D) or of NR3 (A and B)
subunits. The receptor controls a cation channel that is
highly permeable to monovalent ions and calcium and
exhibits voltage-dependent inhibition by magnesium. Dual
agonists, glutamate and glycine, are required for
efficient activation of the NMDA receptor. Among NMDA
receptor subtypes, the NR2B subunit containing receptors
appear particularly important for pain perception; thus
NR2B-selective antagonists may be useful in the
treatment of chronic pain.
Length = 362
Score = 27.7 bits (62), Expect = 10.0
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 177 VDVDGDGR-IDFNGDGYFSFEEFVEIVYNMGATTEE 211
++V +GR + F DGY + V I N EE
Sbjct: 309 MNVTWEGRDLSFTEDGYLVNPKLVVISLNKERVWEE 344
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.141 0.411
Gapped
Lambda K H
0.267 0.0908 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,769,522
Number of extensions: 1839902
Number of successful extensions: 2953
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2917
Number of HSP's successfully gapped: 126
Length of query: 324
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 227
Effective length of database: 6,635,264
Effective search space: 1506204928
Effective search space used: 1506204928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.2 bits)